Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0431020 | XP_013461781.1 | 96.444 | 450 | 9 | 1 | 1 | 450 | 1 | 443 | 0.0 | 889 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0431020 | sp|Q5S1U6|IFRD1_PIG | 24.661 | 442 | 266 | 14 | 16 | 432 | 41 | 440 | 1.65e-25 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0431020 | A0A072V2D3 | 96.444 | 450 | 9 | 1 | 1 | 450 | 1 | 443 | 0.0 | 889 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000570 | Msa0431020 | -0.825784 | 3.880093e-54 | -8.615850e-47 |
| Msa0012260 | Msa0431020 | 0.822242 | 2.631171e-53 | -8.615850e-47 |
| Msa0038020 | Msa0431020 | 0.806899 | 6.574719e-50 | -8.615850e-47 |
| Msa0060970 | Msa0431020 | 0.832451 | 9.384845e-56 | -8.615850e-47 |
| Msa0085720 | Msa0431020 | 0.815485 | 9.025625e-52 | -8.615850e-47 |
| Msa0132240 | Msa0431020 | 0.812875 | 3.401499e-51 | -8.615850e-47 |
| Msa0140170 | Msa0431020 | 0.853000 | 3.190439e-61 | -8.615850e-47 |
| Msa0204780 | Msa0431020 | 0.822020 | 2.961734e-53 | -8.615850e-47 |
| Msa0208070 | Msa0431020 | 0.803636 | 3.172209e-49 | -8.615850e-47 |
| Msa0370310 | Msa0431020 | 0.804422 | 2.176466e-49 | -8.615850e-47 |
| Msa0370870 | Msa0431020 | 0.854222 | 1.421452e-61 | -8.615850e-47 |
| Msa0381220 | Msa0431020 | 0.947759 | 3.595836e-106 | -8.615850e-47 |
| Msa0419050 | Msa0431020 | 0.813310 | 2.731236e-51 | -8.615850e-47 |
| Msa0431020 | Msa0442650 | 0.816427 | 5.562594e-52 | -8.615850e-47 |
| Msa0431020 | Msa0475050 | 0.812903 | 3.354718e-51 | -8.615850e-47 |
| Msa0431020 | Msa0510560 | 0.823782 | 1.150836e-53 | -8.615850e-47 |
| Msa0431020 | Msa0519390 | 0.857072 | 2.093909e-62 | -8.615850e-47 |
| Msa0431020 | Msa0598560 | 0.840945 | 6.402579e-58 | -8.615850e-47 |
| Msa0431020 | Msa0724950 | 0.824425 | 8.126800e-54 | -8.615850e-47 |
| Msa0431020 | Msa0763080 | 0.818253 | 2.158880e-52 | -8.615850e-47 |
| Msa0431020 | Msa0845070 | 0.808791 | 2.604124e-50 | -8.615850e-47 |
| Msa0431020 | Msa0866800 | 0.819425 | 1.169455e-52 | -8.615850e-47 |
| Msa0431020 | Msa0896700 | 0.832607 | 8.584372e-56 | -8.615850e-47 |
| Msa0431020 | Msa0944730 | 0.849758 | 2.632435e-60 | -8.615850e-47 |
| Msa0431020 | Msa0962210 | 0.854892 | 9.094853e-62 | -8.615850e-47 |
| Msa0431020 | Msa0996810 | 0.825478 | 4.585579e-54 | -8.615850e-47 |
| Msa0431020 | Msa1032640 | 0.801152 | 1.030387e-48 | -8.615850e-47 |
| Msa0431020 | Msa1072530 | -0.816171 | 6.345393e-52 | -8.615850e-47 |
| Msa0431020 | Msa1130290 | -0.819079 | 1.401983e-52 | -8.615850e-47 |
| Msa0431020 | Msa1350690 | 0.801526 | 8.636749e-49 | -8.615850e-47 |
| Msa0431020 | Msa1360280 | 0.811812 | 5.804116e-51 | -8.615850e-47 |
| Msa0431020 | Msa1368180 | 0.848714 | 5.139736e-60 | -8.615850e-47 |
| Msa0431020 | Msa1385580 | 0.833962 | 3.944968e-56 | -8.615850e-47 |
| Msa0431020 | Msa1415820 | 0.823556 | 1.299556e-53 | -8.615850e-47 |
| Msa0431020 | Msa1422840 | 0.808953 | 2.404139e-50 | -8.615850e-47 |
| Msa0287670 | Msa0431020 | 0.802115 | 6.539792e-49 | -8.615850e-47 |
| Msa0312310 | Msa0431020 | 0.806012 | 1.011279e-49 | -8.615850e-47 |
| Msa0328380 | Msa0431020 | 0.857149 | 1.987411e-62 | -8.615850e-47 |
| Msa0362060 | Msa0431020 | 0.808959 | 2.396406e-50 | -8.615850e-47 |
| Msa0363100 | Msa0431020 | 0.802291 | 6.013846e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0431020 | MtrunA17_Chr3g0134791 | 96.444 | 450 | 9 | 1 | 1 | 450 | 1 | 443 | 0.0 | 889 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0431020 | AT1G27760.3 | 56.923 | 455 | 175 | 6 | 1 | 449 | 1 | 440 | 1.32e-178 | 507 |
| Msa0431020 | AT1G27760.1 | 56.484 | 455 | 173 | 7 | 1 | 449 | 1 | 436 | 1.65e-174 | 496 |
| Msa0431020 | AT1G27760.2 | 57.143 | 427 | 158 | 7 | 29 | 449 | 18 | 425 | 4.36e-173 | 492 |
Find 94 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATACATTGGAACCTAATT+TGG | 0.073567 | 3_2:-82892789 | None:intergenic |
| ATATGATGCAGTGCTTTATT+TGG | 0.158188 | 3_2:+82895204 | Msa0431020:three_prime_UTR |
| CCAATCTTCATTGAAATTTC+AGG | 0.167869 | 3_2:-82894344 | None:intergenic |
| GCCTTGTTCAAAACTGAATT+TGG | 0.179293 | 3_2:-82894884 | None:intergenic |
| CCCATTGTAACAGTTGTTTC+TGG | 0.235321 | 3_2:-82891434 | None:intergenic |
| GTTTCTGGTGGTTTGTTGTT+AGG | 0.258699 | 3_2:-82891419 | None:intergenic |
| ATCCACAAGTAAATCAATTT+AGG | 0.266902 | 3_2:-82895454 | None:intergenic |
| CTGACTATTAAGATCTTTCT+TGG | 0.273029 | 3_2:-82894152 | None:intergenic |
| TCTTGAATAAGCTGTGTATT+AGG | 0.276385 | 3_2:-82891178 | None:intergenic |
| ATGAAAGATGAAGAATAATT+AGG | 0.279534 | 3_2:-82891358 | None:intergenic |
| ATATTCTTACAAGGATTAAA+AGG | 0.280325 | 3_2:+82894073 | Msa0431020:CDS |
| ACTCTTGAAAGCATCAATTA+TGG | 0.282875 | 3_2:-82891868 | None:intergenic |
| ACCGCTGCTTATTGAGTAAC+TGG | 0.290403 | 3_2:-82894913 | None:intergenic |
| TATGATGCAGTGCTTTATTT+GGG | 0.309736 | 3_2:+82895205 | Msa0431020:three_prime_UTR |
| TCATTCCATTGCAGGTTGTT+TGG | 0.310885 | 3_2:+82892471 | Msa0431020:intron |
| TGGGGATTCAATTATTCATT+TGG | 0.317931 | 3_2:+82895224 | Msa0431020:three_prime_UTR |
| CGGCCATTATTCAGTCAATA+TGG | 0.334875 | 3_2:+82895153 | Msa0431020:CDS |
| ATCTAGAAGACCGGATAAAT+AGG | 0.347265 | 3_2:-82893909 | None:intergenic |
| CCGCTGATTGCTGTGTTGTC+TGG | 0.353005 | 3_2:+82895264 | Msa0431020:three_prime_UTR |
| TTTCTGGTGGTTTGTTGTTA+GGG | 0.357800 | 3_2:-82891418 | None:intergenic |
| TGAAGAATCTGTTACCCCTT+TGG | 0.370160 | 3_2:+82892534 | Msa0431020:CDS |
| CAGCTTATTCAAGATTGTTT+CGG | 0.373983 | 3_2:+82891187 | Msa0431020:five_prime_UTR |
| GAACCTGTTCAGAGATATCT+TGG | 0.374329 | 3_2:+82894177 | Msa0431020:CDS |
| CATACATTGGAACCTAATTT+GGG | 0.377504 | 3_2:-82892788 | None:intergenic |
| AATTTCATCAAGCACTTCCT+TGG | 0.377807 | 3_2:+82894520 | Msa0431020:CDS |
| AGCATCAATTATGGCTGAAA+AGG | 0.383011 | 3_2:-82891859 | None:intergenic |
| CGAGTGATCCATCCCAAATT+AGG | 0.396381 | 3_2:+82892776 | Msa0431020:CDS |
| ATCAAGCACTTCCTTGGAGG+GGG | 0.412529 | 3_2:+82894526 | Msa0431020:CDS |
| AGATGCAAGAGTTATCTCTT+TGG | 0.428662 | 3_2:-82892351 | None:intergenic |
| CCTGAAATTTCAATGAAGAT+TGG | 0.428816 | 3_2:+82894344 | Msa0431020:CDS |
| CATCCATATTGACTGAATAA+TGG | 0.431054 | 3_2:-82895156 | None:intergenic |
| AATCCAAGATATCTCTGAAC+AGG | 0.433115 | 3_2:-82894180 | None:intergenic |
| TCTGTGGAGGCTGGTGGAAA+AGG | 0.441263 | 3_2:+82894124 | Msa0431020:CDS |
| AGTTCAATAGCCTATTTATC+CGG | 0.449992 | 3_2:+82893899 | Msa0431020:intron |
| TGTATAGTTGCTGGACTGCT+TGG | 0.454319 | 3_2:+82892688 | Msa0431020:intron |
| CGAAGTAGATTCGCGTACTA+CGG | 0.466555 | 3_2:+82895309 | Msa0431020:three_prime_UTR |
| ACCAGAAACAACTGTTACAA+TGG | 0.475750 | 3_2:+82891433 | Msa0431020:exon |
| AATGGCGAACATAGAATGTC+TGG | 0.477792 | 3_2:+82894734 | Msa0431020:CDS |
| GGATGAGACATGAGTTTAAG+TGG | 0.479097 | 3_2:+82895174 | Msa0431020:exon |
| GCAGTTATTAATTGAGCAGA+AGG | 0.482620 | 3_2:-82892962 | None:intergenic |
| TCTGATCTCATGAATGTGTC+TGG | 0.484091 | 3_2:+82891652 | Msa0431020:CDS |
| AACCTAAATTGATTTACTTG+TGG | 0.491543 | 3_2:+82895452 | Msa0431020:three_prime_UTR |
| TTCATCAAGCACTTCCTTGG+AGG | 0.494607 | 3_2:+82894523 | Msa0431020:CDS |
| CTTATTGAGTAACTGGGTCC+TGG | 0.494718 | 3_2:-82894906 | None:intergenic |
| TAGCAAGAGATTCATCCAAA+GGG | 0.495141 | 3_2:-82892549 | None:intergenic |
| TTTACAAGAACGAAAACAAA+GGG | 0.500771 | 3_2:-82891335 | None:intergenic |
| ATCACTTGCATTCTTAGCCT+CGG | 0.503479 | 3_2:-82894014 | None:intergenic |
| GGGGTTCATTAAACATATGC+AGG | 0.506623 | 3_2:+82894546 | Msa0431020:CDS |
| AGAAACTAAAGACATCTTGT+AGG | 0.508490 | 3_2:-82894688 | None:intergenic |
| GGTTGTTTGGCCTTGACAGT+TGG | 0.510973 | 3_2:+82892484 | Msa0431020:intron |
| GTCGTGGTCTCAAATGATAC+AGG | 0.513312 | 3_2:+82894388 | Msa0431020:CDS |
| TCATCAAGCACTTCCTTGGA+GGG | 0.513702 | 3_2:+82894524 | Msa0431020:CDS |
| AGAAGAAACAGAGCGATCAA+TGG | 0.515869 | 3_2:+82892742 | Msa0431020:CDS |
| GTCTTCTTTATCTAGAAGAC+CGG | 0.516274 | 3_2:-82893918 | None:intergenic |
| CCAGAAACAACTGTTACAAT+GGG | 0.518714 | 3_2:+82891434 | Msa0431020:exon |
| AATTGCTGCTGGTGAAGCAC+TGG | 0.528366 | 3_2:+82893952 | Msa0431020:CDS |
| AATCAACAGGGCAGGAACTT+CGG | 0.529037 | 3_2:+82895133 | Msa0431020:intron |
| TAGAATGTCTGGTGGTGAAA+AGG | 0.530016 | 3_2:+82894745 | Msa0431020:CDS |
| CATCAAGCACTTCCTTGGAG+GGG | 0.533991 | 3_2:+82894525 | Msa0431020:CDS |
| AATCTTTCTGTGGAGGCTGG+TGG | 0.542256 | 3_2:+82894118 | Msa0431020:CDS |
| TGAAGCTGAATTCAAAACAT+TGG | 0.544268 | 3_2:+82893029 | Msa0431020:CDS |
| GAAAGTTACATATTCTTACA+AGG | 0.545343 | 3_2:+82894064 | Msa0431020:CDS |
| TCAAGCACTTCCTTGGAGGG+GGG | 0.547072 | 3_2:+82894527 | Msa0431020:CDS |
| ACTCTTGCATCTCAAGCCAT+TGG | 0.553154 | 3_2:+82892362 | Msa0431020:CDS |
| CATTGGAACCTAATTTGGGA+TGG | 0.553532 | 3_2:-82892784 | None:intergenic |
| GACACATTCATGAGATCAGA+TGG | 0.557531 | 3_2:-82891649 | None:intergenic |
| ATTGTAACAGTTGTTTCTGG+TGG | 0.561054 | 3_2:-82891431 | None:intergenic |
| CTAGCAAGAGATTCATCCAA+AGG | 0.563507 | 3_2:-82892550 | None:intergenic |
| TAACTGCTGTGGTGTCTGCA+TGG | 0.566660 | 3_2:+82892978 | Msa0431020:CDS |
| GTCTTCTAGATAAAGAAGAC+AGG | 0.574234 | 3_2:+82893921 | Msa0431020:CDS |
| TGAATTCAAAACATTGGCAA+AGG | 0.585766 | 3_2:+82893035 | Msa0431020:CDS |
| GAAATTTCAATGAAGATTGG+TGG | 0.588523 | 3_2:+82894347 | Msa0431020:CDS |
| AAGAATATGTAACTTTCCTG+TGG | 0.588647 | 3_2:-82894058 | None:intergenic |
| TAAGCAGCGGTTACAATCTG+AGG | 0.591489 | 3_2:+82894925 | Msa0431020:CDS |
| TCAGATTGCCTACGGTAGAG+AGG | 0.593998 | 3_2:-82893009 | None:intergenic |
| AGAAAGATCTTAATAGTCAG+AGG | 0.594407 | 3_2:+82894155 | Msa0431020:CDS |
| ATTCAGCTTCAGATTGCCTA+CGG | 0.596364 | 3_2:-82893017 | None:intergenic |
| ATGATGCAGTGCTTTATTTG+GGG | 0.609299 | 3_2:+82895206 | Msa0431020:three_prime_UTR |
| CGAAAACAAAGGGAATTGAA+AGG | 0.618578 | 3_2:-82891325 | None:intergenic |
| AGGTCAGTAAGAATTGCTGC+TGG | 0.620402 | 3_2:+82893941 | Msa0431020:CDS |
| ATCACTACATCCAACTGTCA+AGG | 0.621289 | 3_2:-82892494 | None:intergenic |
| AGCGATCAATGGACATAATG+TGG | 0.622561 | 3_2:+82892753 | Msa0431020:CDS |
| TCAAGAAGAGAGTAAACCAC+AGG | 0.630235 | 3_2:+82894042 | Msa0431020:CDS |
| TGCTCAATTAATAACTGCTG+TGG | 0.636366 | 3_2:+82892967 | Msa0431020:CDS |
| GATGAGACATGAGTTTAAGT+GGG | 0.636453 | 3_2:+82895175 | Msa0431020:exon |
| GTTTACAAGAACGAAAACAA+AGG | 0.637113 | 3_2:-82891336 | None:intergenic |
| TTTATTTAAGGGGCACCACG+AGG | 0.637987 | 3_2:+82891829 | Msa0431020:intron |
| CCCAGTTACTCAATAAGCAG+CGG | 0.664075 | 3_2:+82894912 | Msa0431020:CDS |
| CCGCTGCTTATTGAGTAACT+GGG | 0.664335 | 3_2:-82894912 | None:intergenic |
| TTATTTAAGGGGCACCACGA+GGG | 0.671059 | 3_2:+82891830 | Msa0431020:intron |
| AGCAAGAGATTCATCCAAAG+GGG | 0.679651 | 3_2:-82892548 | None:intergenic |
| CCAGACAACACAGCAATCAG+CGG | 0.682498 | 3_2:-82895264 | None:intergenic |
| ATTCTCTACAGACATCGTCG+TGG | 0.723009 | 3_2:+82894372 | Msa0431020:CDS |
| GGCGAACATAGAATGTCTGG+TGG | 0.743950 | 3_2:+82894737 | Msa0431020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTGTTAAAAAAATGAAT+CGG | - | chr3_2:82891395-82891414 | None:intergenic | 10.0% |
| !!! | ATATAACTTGATTATTTTTT+AGG | + | chr3_2:82891945-82891964 | Msa0431020:intron | 10.0% |
| !!! | ATCAATATTTAACTTAATGA+TGG | - | chr3_2:82891767-82891786 | None:intergenic | 15.0% |
| !!! | TAAATATTGATGATTATTGA+AGG | + | chr3_2:82891776-82891795 | Msa0431020:intron | 15.0% |
| !!! | TATTTTTTAGGTTTTTGTTT+TGG | + | chr3_2:82891957-82891976 | Msa0431020:intron | 15.0% |
| !! | ACATACATTATATATGAAAA+AGG | - | chr3_2:82892409-82892428 | None:intergenic | 15.0% |
| !! | TATAACATCAAAAACATAAA+AGG | - | chr3_2:82892643-82892662 | None:intergenic | 15.0% |
| !!! | CAAAATAAGTTGAAAAATAT+CGG | - | chr3_2:82893540-82893559 | None:intergenic | 15.0% |
| !!! | CAACTTATTTTGATAATTTA+AGG | + | chr3_2:82893548-82893567 | Msa0431020:intron | 15.0% |
| !! | ACTAAATTATTAGGAAAAAA+AGG | + | chr3_2:82893639-82893658 | Msa0431020:intron | 15.0% |
| !! | CTAAATTATTAGGAAAAAAA+GGG | + | chr3_2:82893640-82893659 | Msa0431020:intron | 15.0% |
| !!! | TTTGCTTATATTTAAGATTT+AGG | - | chr3_2:82893666-82893685 | None:intergenic | 15.0% |
| !! | TCAAATAATAGTAACAATAA+GGG | - | chr3_2:82894243-82894262 | None:intergenic | 15.0% |
| !! | ATGAAAGATGAAGAATAATT+AGG | - | chr3_2:82891361-82891380 | None:intergenic | 20.0% |
| !! | TTTCCTGTTGAATTTATTTA+AGG | + | chr3_2:82891817-82891836 | Msa0431020:intron | 20.0% |
| !! | TTCCTGTTGAATTTATTTAA+GGG | + | chr3_2:82891818-82891837 | Msa0431020:intron | 20.0% |
| !!! | TTTAGTCAAAATTTTACCAA+TGG | - | chr3_2:82892381-82892400 | None:intergenic | 20.0% |
| !!! | ACTTTTTAAAAATGAAAGCA+TGG | - | chr3_2:82893264-82893283 | None:intergenic | 20.0% |
| !!! | TAAGGTTTAAATTAGAGTTT+TGG | + | chr3_2:82893566-82893585 | Msa0431020:intron | 20.0% |
| !!! | TTTTTCCTAATAATTTAGTC+TGG | - | chr3_2:82893638-82893657 | None:intergenic | 20.0% |
| !! | ACATAATTTCACACTTATTA+AGG | - | chr3_2:82893725-82893744 | None:intergenic | 20.0% |
| !!! | TGTATTTTTACTTATAGTAG+AGG | + | chr3_2:82893742-82893761 | Msa0431020:intron | 20.0% |
| !! | ATATTCTTACAAGGATTAAA+AGG | + | chr3_2:82894073-82894092 | Msa0431020:CDS | 20.0% |
| !! | CTCAAATAATAGTAACAATA+AGG | - | chr3_2:82894244-82894263 | None:intergenic | 20.0% |
| !! | TAAATAAATGAAAGAAAGCA+AGG | - | chr3_2:82894418-82894437 | None:intergenic | 20.0% |
| !!! | TTGTTTAGATACTTTTTCTT+GGG | - | chr3_2:82894716-82894735 | None:intergenic | 20.0% |
| !!! | ATTGTTTAGATACTTTTTCT+TGG | - | chr3_2:82894717-82894736 | None:intergenic | 20.0% |
| !!! | AAGAAAAAGTATCTAAACAA+TGG | + | chr3_2:82894716-82894735 | Msa0431020:CDS | 20.0% |
| !!! | CATTCTTACTATATTTTGTT+AGG | + | chr3_2:82894952-82894971 | Msa0431020:intron | 20.0% |
| !!! | TAACACTGATTTTGATGATT+CGG | - | chr3_2:82891287-82891306 | None:intergenic | 25.0% |
| ! | TTTACAAGAACGAAAACAAA+GGG | - | chr3_2:82891338-82891357 | None:intergenic | 25.0% |
| ! | AAAAAATGAATCGGAATTTG+AGG | - | chr3_2:82891386-82891405 | None:intergenic | 25.0% |
| ! | TTGATGCATTAGATGAAAAA+AGG | + | chr3_2:82891722-82891741 | Msa0431020:CDS | 25.0% |
| !! | ATATTGATGATTATTGAAGG+TGG | + | chr3_2:82891779-82891798 | Msa0431020:intron | 25.0% |
| ! | TCCTGTTGAATTTATTTAAG+GGG | + | chr3_2:82891819-82891838 | Msa0431020:intron | 25.0% |
| ! | TCAAATATGTCAATTCAAAC+AGG | + | chr3_2:82892190-82892209 | Msa0431020:intron | 25.0% |
| ! | TTAAAGACATACATTACACA+AGG | - | chr3_2:82892216-82892235 | None:intergenic | 25.0% |
| ! | AAAACAAATAAATCACAGCA+TGG | - | chr3_2:82892263-82892282 | None:intergenic | 25.0% |
| ! | TGTCTTGCTTCAATAAAAAA+GGG | + | chr3_2:82892311-82892330 | Msa0431020:CDS | 25.0% |
| ! | AATAAAAAAGGGATCAAAGA+AGG | + | chr3_2:82892322-82892341 | Msa0431020:CDS | 25.0% |
| ! | ATTAAATTTCATTCCATTGC+AGG | + | chr3_2:82892463-82892482 | Msa0431020:intron | 25.0% |
| ! | TGCTAGAAGTAAAAATGTTT+CGG | + | chr3_2:82892567-82892586 | Msa0431020:CDS | 25.0% |
| ! | AAAAACATAAAAGGAGAACA+GGG | - | chr3_2:82892634-82892653 | None:intergenic | 25.0% |
| !!! | ATTTTAACAGATGCATACAT+TGG | - | chr3_2:82892804-82892823 | None:intergenic | 25.0% |
| ! | TAAATAAAGGGAAGACAAAT+GGG | - | chr3_2:82892902-82892921 | None:intergenic | 25.0% |
| ! | TAATTAAGTGATTTAAGCAG+TGG | - | chr3_2:82893196-82893215 | None:intergenic | 25.0% |
| !! | TTGATCAATTTGAAACTGTT+TGG | + | chr3_2:82893283-82893302 | Msa0431020:intron | 25.0% |
| ! | AGCAACAACAAAATATAAGT+GGG | - | chr3_2:82893506-82893525 | None:intergenic | 25.0% |
| ! | AATTTCACACTTATTAAGGA+TGG | - | chr3_2:82893721-82893740 | None:intergenic | 25.0% |
| ! | TACAAATCTATATGTAGGAT+AGG | - | chr3_2:82893821-82893840 | None:intergenic | 25.0% |
| ! | AGGAATACAAATCTATATGT+AGG | - | chr3_2:82893826-82893845 | None:intergenic | 25.0% |
| ! | GGAAAATAAAATCAATAAGC+TGG | - | chr3_2:82893875-82893894 | None:intergenic | 25.0% |
| ! | GAAAGTTACATATTCTTACA+AGG | + | chr3_2:82894064-82894083 | Msa0431020:CDS | 25.0% |
| !!! | AGATATCTTGGATTTTTTTG+AGG | + | chr3_2:82894189-82894208 | Msa0431020:CDS | 25.0% |
| !!! | TTTGTTCCTTTTAATTTGAC+TGG | + | chr3_2:82895096-82895115 | Msa0431020:intron | 25.0% |
| ! | AGCTGTCAAAAAATAAAGTA+GGG | - | chr3_2:82895349-82895368 | None:intergenic | 25.0% |
| ! | TAGCTGTCAAAAAATAAAGT+AGG | - | chr3_2:82895350-82895369 | None:intergenic | 25.0% |
| !! | AACCTAAATTGATTTACTTG+TGG | + | chr3_2:82895452-82895471 | Msa0431020:three_prime_UTR | 25.0% |
| ! | ATCCACAAGTAAATCAATTT+AGG | - | chr3_2:82895457-82895476 | None:intergenic | 25.0% |
| TCTTGAATAAGCTGTGTATT+AGG | - | chr3_2:82891181-82891200 | None:intergenic | 30.0% | |
| CAGCTTATTCAAGATTGTTT+CGG | + | chr3_2:82891187-82891206 | Msa0431020:five_prime_UTR | 30.0% | |
| ! | AGTAGTGTTCGAATTTTGAA+TGG | + | chr3_2:82891249-82891268 | Msa0431020:five_prime_UTR | 30.0% |
| GTTTACAAGAACGAAAACAA+AGG | - | chr3_2:82891339-82891358 | None:intergenic | 30.0% | |
| !! | GTGTTTGTTATGTTGTGTTT+AGG | + | chr3_2:82891553-82891572 | Msa0431020:intron | 30.0% |
| !! | ACTCTTGAAAGCATCAATTA+TGG | - | chr3_2:82891871-82891890 | None:intergenic | 30.0% |
| !!! | TTTTAGGTTTTTGTTTTGGC+TGG | + | chr3_2:82891961-82891980 | Msa0431020:intron | 30.0% |
| !!! | GGTACAATTTTTAGAGTAAC+AGG | + | chr3_2:82891982-82892001 | Msa0431020:intron | 30.0% |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr3_2:82892074-82892093 | Msa0431020:intron | 30.0% |
| CTGTCTTGCTTCAATAAAAA+AGG | + | chr3_2:82892310-82892329 | Msa0431020:CDS | 30.0% | |
| CAAAAACATAAAAGGAGAAC+AGG | - | chr3_2:82892635-82892654 | None:intergenic | 30.0% | |
| !! | TCATTTTTGTGTATAGTTGC+TGG | + | chr3_2:82892679-82892698 | Msa0431020:intron | 30.0% |
| !! | TTGGCTATAATCACTTTTGT+TGG | + | chr3_2:82892707-82892726 | Msa0431020:CDS | 30.0% |
| !! | CTATAATCACTTTTGTTGGA+GGG | + | chr3_2:82892711-82892730 | Msa0431020:CDS | 30.0% |
| CATACATTGGAACCTAATTT+GGG | - | chr3_2:82892791-82892810 | None:intergenic | 30.0% | |
| AAATAAAGGGAAGACAAATG+GGG | - | chr3_2:82892901-82892920 | None:intergenic | 30.0% | |
| GTAAATAAAGGGAAGACAAA+TGG | - | chr3_2:82892903-82892922 | None:intergenic | 30.0% | |
| TGAAGCTGAATTCAAAACAT+TGG | + | chr3_2:82893029-82893048 | Msa0431020:CDS | 30.0% | |
| TGAATTCAAAACATTGGCAA+AGG | + | chr3_2:82893035-82893054 | Msa0431020:CDS | 30.0% | |
| TATATGAGTTACATCGTCTA+TGG | - | chr3_2:82893228-82893247 | None:intergenic | 30.0% | |
| ! | TTTTTCATCCCTCTTTCTAT+GGG | - | chr3_2:82893397-82893416 | None:intergenic | 30.0% |
| !!! | TTTTTTCATCCCTCTTTCTA+TGG | - | chr3_2:82893398-82893417 | None:intergenic | 30.0% |
| TGGGATTACATTTCTCTTAA+GGG | - | chr3_2:82893487-82893506 | None:intergenic | 30.0% | |
| CAGCAACAACAAAATATAAG+TGG | - | chr3_2:82893507-82893526 | None:intergenic | 30.0% | |
| TCCTAATAATTTAGTCTGGA+GGG | - | chr3_2:82893634-82893653 | None:intergenic | 30.0% | |
| TTCCTAATAATTTAGTCTGG+AGG | - | chr3_2:82893635-82893654 | None:intergenic | 30.0% | |
| ATCTATATGTAGGATAGGTA+GGG | - | chr3_2:82893816-82893835 | None:intergenic | 30.0% | |
| AATCTATATGTAGGATAGGT+AGG | - | chr3_2:82893817-82893836 | None:intergenic | 30.0% | |
| AAATAGGCTATTGAACTGAA+TGG | - | chr3_2:82893896-82893915 | None:intergenic | 30.0% | |
| AGTTCAATAGCCTATTTATC+CGG | + | chr3_2:82893899-82893918 | Msa0431020:intron | 30.0% | |
| AAGAATATGTAACTTTCCTG+TGG | - | chr3_2:82894061-82894080 | None:intergenic | 30.0% | |
| TCAATGCAAAAATCTTTCTG+TGG | + | chr3_2:82894108-82894127 | Msa0431020:CDS | 30.0% | |
| CTGACTATTAAGATCTTTCT+TGG | - | chr3_2:82894155-82894174 | None:intergenic | 30.0% | |
| AGAAAGATCTTAATAGTCAG+AGG | + | chr3_2:82894155-82894174 | Msa0431020:CDS | 30.0% | |
| !!! | TGGATTTTTTTGAGGTATGT+TGG | + | chr3_2:82894197-82894216 | Msa0431020:intron | 30.0% |
| !!! | ATTTTTTTGAGGTATGTTGG+TGG | + | chr3_2:82894200-82894219 | Msa0431020:intron | 30.0% |
| ACTTATGAATAAGAGTCAGA+AGG | + | chr3_2:82894278-82894297 | Msa0431020:intron | 30.0% | |
| ! | TGATCTTTTATTGTCATGCT+AGG | + | chr3_2:82894310-82894329 | Msa0431020:intron | 30.0% |
| CCAATCTTCATTGAAATTTC+AGG | - | chr3_2:82894347-82894366 | None:intergenic | 30.0% | |
| CCTGAAATTTCAATGAAGAT+TGG | + | chr3_2:82894344-82894363 | Msa0431020:CDS | 30.0% | |
| GAAATTTCAATGAAGATTGG+TGG | + | chr3_2:82894347-82894366 | Msa0431020:CDS | 30.0% | |
| TTCATTAAACATATGCAGGT+TGG | + | chr3_2:82894550-82894569 | Msa0431020:intron | 30.0% | |
| ACAACTAGGTGCTAAAAAAA+AGG | - | chr3_2:82894586-82894605 | None:intergenic | 30.0% | |
| AGAAACTAAAGACATCTTGT+AGG | - | chr3_2:82894691-82894710 | None:intergenic | 30.0% | |
| !!! | ACCAAATTCAGTTTTGAACA+AGG | + | chr3_2:82894883-82894902 | Msa0431020:CDS | 30.0% |
| AAATGCTACTGTACATCATA+CGG | - | chr3_2:82895013-82895032 | None:intergenic | 30.0% | |
| AGGAATCCAGTCAAATTAAA+AGG | - | chr3_2:82895105-82895124 | None:intergenic | 30.0% | |
| TTCCTTATTGTTGAATCAAC+AGG | + | chr3_2:82895120-82895139 | Msa0431020:intron | 30.0% | |
| TCCTTATTGTTGAATCAACA+GGG | + | chr3_2:82895121-82895140 | Msa0431020:intron | 30.0% | |
| ! | CATCCATATTGACTGAATAA+TGG | - | chr3_2:82895159-82895178 | None:intergenic | 30.0% |
| ! | ATATGATGCAGTGCTTTATT+TGG | + | chr3_2:82895204-82895223 | Msa0431020:three_prime_UTR | 30.0% |
| !! | TATGATGCAGTGCTTTATTT+GGG | + | chr3_2:82895205-82895224 | Msa0431020:three_prime_UTR | 30.0% |
| TGGGGATTCAATTATTCATT+TGG | + | chr3_2:82895224-82895243 | Msa0431020:three_prime_UTR | 30.0% | |
| CGAAAACAAAGGGAATTGAA+AGG | - | chr3_2:82891328-82891347 | None:intergenic | 35.0% | |
| !! | TTTCTGGTGGTTTGTTGTTA+GGG | - | chr3_2:82891421-82891440 | None:intergenic | 35.0% |
| !! | ATTGTAACAGTTGTTTCTGG+TGG | - | chr3_2:82891434-82891453 | None:intergenic | 35.0% |
| ACCAGAAACAACTGTTACAA+TGG | + | chr3_2:82891433-82891452 | Msa0431020:exon | 35.0% | |
| CCAGAAACAACTGTTACAAT+GGG | + | chr3_2:82891434-82891453 | Msa0431020:exon | 35.0% | |
| ATGGGTAAACGTAAGTTTCT+AGG | + | chr3_2:82891452-82891471 | Msa0431020:intron | 35.0% | |
| TGGGTAAACGTAAGTTTCTA+GGG | + | chr3_2:82891453-82891472 | Msa0431020:intron | 35.0% | |
| GCCCCTTAAATAAATTCAAC+AGG | - | chr3_2:82891823-82891842 | None:intergenic | 35.0% | |
| AGCATCAATTATGGCTGAAA+AGG | - | chr3_2:82891862-82891881 | None:intergenic | 35.0% | |
| AGATGCAAGAGTTATCTCTT+TGG | - | chr3_2:82892354-82892373 | None:intergenic | 35.0% | |
| TAGCAAGAGATTCATCCAAA+GGG | - | chr3_2:82892552-82892571 | None:intergenic | 35.0% | |
| GAAGTAAAAATGTTTCGGTG+AGG | + | chr3_2:82892572-82892591 | Msa0431020:intron | 35.0% | |
| !! | GCTATAATCACTTTTGTTGG+AGG | + | chr3_2:82892710-82892729 | Msa0431020:CDS | 35.0% |
| GCATACATTGGAACCTAATT+TGG | - | chr3_2:82892792-82892811 | None:intergenic | 35.0% | |
| AAGCTGAAGCGGTAAATAAA+GGG | - | chr3_2:82892914-82892933 | None:intergenic | 35.0% | |
| TAAGCTGAAGCGGTAAATAA+AGG | - | chr3_2:82892915-82892934 | None:intergenic | 35.0% | |
| AAAGAGTGAATAAGCTGAAG+CGG | - | chr3_2:82892925-82892944 | None:intergenic | 35.0% | |
| CTTCAGCTTATTCACTCTTT+AGG | + | chr3_2:82892925-82892944 | Msa0431020:intron | 35.0% | |
| GCAGTTATTAATTGAGCAGA+AGG | - | chr3_2:82892965-82892984 | None:intergenic | 35.0% | |
| TGCTCAATTAATAACTGCTG+TGG | + | chr3_2:82892967-82892986 | Msa0431020:CDS | 35.0% | |
| GTCGATATTATACCTCTTAC+AGG | - | chr3_2:82893135-82893154 | None:intergenic | 35.0% | |
| ! | TGTTTGGAGTTTCACACAAT+AGG | + | chr3_2:82893299-82893318 | Msa0431020:intron | 35.0% |
| ! | GTTTGGAGTTTCACACAATA+GGG | + | chr3_2:82893300-82893319 | Msa0431020:intron | 35.0% |
| ! | GAATAACACTTCACGCATTT+TGG | + | chr3_2:82893366-82893385 | Msa0431020:intron | 35.0% |
| GTGGGATTACATTTCTCTTA+AGG | - | chr3_2:82893488-82893507 | None:intergenic | 35.0% | |
| GGCAATCTATTCTATAGACT+AGG | + | chr3_2:82893587-82893606 | Msa0431020:intron | 35.0% | |
| TCCCTCCAGACTAAATTATT+AGG | + | chr3_2:82893630-82893649 | Msa0431020:intron | 35.0% | |
| TAGATAAAATGTACTCCCTC+TGG | - | chr3_2:82893768-82893787 | None:intergenic | 35.0% | |
| TCTATATGTAGGATAGGTAG+GGG | - | chr3_2:82893815-82893834 | None:intergenic | 35.0% | |
| AAATCAATAAGCTGGAACCA+AGG | - | chr3_2:82893867-82893886 | None:intergenic | 35.0% | |
| ATCTAGAAGACCGGATAAAT+AGG | - | chr3_2:82893912-82893931 | None:intergenic | 35.0% | |
| GTCTTCTTTATCTAGAAGAC+CGG | - | chr3_2:82893921-82893940 | None:intergenic | 35.0% | |
| GTCTTCTAGATAAAGAAGAC+AGG | + | chr3_2:82893921-82893940 | Msa0431020:CDS | 35.0% | |
| !!! | CTGGCTCTAATTTTTGAGAT+TGG | + | chr3_2:82893971-82893990 | Msa0431020:CDS | 35.0% |
| ! | TATCGATAAATTTTCGACCG+AGG | + | chr3_2:82893997-82894016 | Msa0431020:CDS | 35.0% |
| ATGCAAAAATCTTTCTGTGG+AGG | + | chr3_2:82894111-82894130 | Msa0431020:CDS | 35.0% | |
| AATCCAAGATATCTCTGAAC+AGG | - | chr3_2:82894183-82894202 | None:intergenic | 35.0% | |
| ! | CTTTTATTGTCATGCTAGGA+TGG | + | chr3_2:82894314-82894333 | Msa0431020:intron | 35.0% |
| AATTTCATCAAGCACTTCCT+TGG | + | chr3_2:82894520-82894539 | Msa0431020:CDS | 35.0% | |
| ! | ACAAGCTTTTGACAACAACT+AGG | - | chr3_2:82894600-82894619 | None:intergenic | 35.0% |
| AAGAGGGTCAGAAAAACAAA+AGG | - | chr3_2:82894642-82894661 | None:intergenic | 35.0% | |
| ATCAGCAGATAACAAGTGAA+AGG | - | chr3_2:82894827-82894846 | None:intergenic | 35.0% | |
| ! | GCCTTGTTCAAAACTGAATT+TGG | - | chr3_2:82894887-82894906 | None:intergenic | 35.0% |
| GATGAGACATGAGTTTAAGT+GGG | + | chr3_2:82895175-82895194 | Msa0431020:exon | 35.0% | |
| !! | ATGATGCAGTGCTTTATTTG+GGG | + | chr3_2:82895206-82895225 | Msa0431020:three_prime_UTR | 35.0% |
| !! | GTTTCTGGTGGTTTGTTGTT+AGG | - | chr3_2:82891422-82891441 | None:intergenic | 40.0% |
| ! | CCCATTGTAACAGTTGTTTC+TGG | - | chr3_2:82891437-82891456 | None:intergenic | 40.0% |
| GACACATTCATGAGATCAGA+TGG | - | chr3_2:82891652-82891671 | None:intergenic | 40.0% | |
| TCTGATCTCATGAATGTGTC+TGG | + | chr3_2:82891652-82891671 | Msa0431020:CDS | 40.0% | |
| ACAGGCAATTTCAACTCACT+AGG | + | chr3_2:82892000-82892019 | Msa0431020:intron | 40.0% | |
| CAGGCAATTTCAACTCACTA+GGG | + | chr3_2:82892001-82892020 | Msa0431020:intron | 40.0% | |
| TCTACACTTGTGAGACTGTT+CGG | - | chr3_2:82892165-82892184 | None:intergenic | 40.0% | |
| TCATTCCATTGCAGGTTGTT+TGG | + | chr3_2:82892471-82892490 | Msa0431020:intron | 40.0% | |
| ATCACTACATCCAACTGTCA+AGG | - | chr3_2:82892497-82892516 | None:intergenic | 40.0% | |
| TGAAGAATCTGTTACCCCTT+TGG | + | chr3_2:82892534-82892553 | Msa0431020:CDS | 40.0% | |
| AGCAAGAGATTCATCCAAAG+GGG | - | chr3_2:82892551-82892570 | None:intergenic | 40.0% | |
| CTAGCAAGAGATTCATCCAA+AGG | - | chr3_2:82892553-82892572 | None:intergenic | 40.0% | |
| AGAAGAAACAGAGCGATCAA+TGG | + | chr3_2:82892742-82892761 | Msa0431020:CDS | 40.0% | |
| AGCGATCAATGGACATAATG+TGG | + | chr3_2:82892753-82892772 | Msa0431020:CDS | 40.0% | |
| CATTGGAACCTAATTTGGGA+TGG | - | chr3_2:82892787-82892806 | None:intergenic | 40.0% | |
| ATTCAGCTTCAGATTGCCTA+CGG | - | chr3_2:82893020-82893039 | None:intergenic | 40.0% | |
| CTCAATGCCATAGATGATGT+AGG | + | chr3_2:82893169-82893188 | Msa0431020:intron | 40.0% | |
| ! | TGCGTGAAGTGTTATTCTAG+TGG | - | chr3_2:82893363-82893382 | None:intergenic | 40.0% |
| TTGGACTAACCCATAGAAAG+AGG | + | chr3_2:82893385-82893404 | Msa0431020:intron | 40.0% | |
| TGGACTAACCCATAGAAAGA+GGG | + | chr3_2:82893386-82893405 | Msa0431020:intron | 40.0% | |
| TTACTTATAGTAGAGGCCAG+AGG | + | chr3_2:82893749-82893768 | Msa0431020:intron | 40.0% | |
| TACTTATAGTAGAGGCCAGA+GGG | + | chr3_2:82893750-82893769 | Msa0431020:intron | 40.0% | |
| !! | TTCCTTGTGTAGCTGTTTCT+TGG | + | chr3_2:82893841-82893860 | Msa0431020:intron | 40.0% |
| ATCACTTGCATTCTTAGCCT+CGG | - | chr3_2:82894017-82894036 | None:intergenic | 40.0% | |
| TCAAGAAGAGAGTAAACCAC+AGG | + | chr3_2:82894042-82894061 | Msa0431020:CDS | 40.0% | |
| AAAAATCTTTCTGTGGAGGC+TGG | + | chr3_2:82894115-82894134 | Msa0431020:CDS | 40.0% | |
| GAACCTGTTCAGAGATATCT+TGG | + | chr3_2:82894177-82894196 | Msa0431020:CDS | 40.0% | |
| GGGGTTCATTAAACATATGC+AGG | + | chr3_2:82894546-82894565 | Msa0431020:CDS | 40.0% | |
| AAGTCGTTGTCCTAATACCA+CGG | - | chr3_2:82894668-82894687 | None:intergenic | 40.0% | |
| AATGGCGAACATAGAATGTC+TGG | + | chr3_2:82894734-82894753 | Msa0431020:CDS | 40.0% | |
| ! | TAGAATGTCTGGTGGTGAAA+AGG | + | chr3_2:82894745-82894764 | Msa0431020:CDS | 40.0% |
| ! | TAAGTCTTGTGATGTCTGTG+AGG | + | chr3_2:82894783-82894802 | Msa0431020:intron | 40.0% |
| ! | ACCTATTCTTTTACGTGCAG+AGG | + | chr3_2:82894849-82894868 | Msa0431020:intron | 40.0% |
| TCCTCTGCACGTAAAAGAAT+AGG | - | chr3_2:82894853-82894872 | None:intergenic | 40.0% | |
| !!! | ATTCAGTTTTGAACAAGGCC+AGG | + | chr3_2:82894888-82894907 | Msa0431020:CDS | 40.0% |
| !! | GCCCTGTTGATTCAACAATA+AGG | - | chr3_2:82895125-82895144 | None:intergenic | 40.0% |
| TATTGTTGAATCAACAGGGC+AGG | + | chr3_2:82895125-82895144 | Msa0431020:intron | 40.0% | |
| CGGCCATTATTCAGTCAATA+TGG | + | chr3_2:82895153-82895172 | Msa0431020:CDS | 40.0% | |
| GGATGAGACATGAGTTTAAG+TGG | + | chr3_2:82895174-82895193 | Msa0431020:exon | 40.0% | |
| !! | TTTATTTAAGGGGCACCACG+AGG | + | chr3_2:82891829-82891848 | Msa0431020:intron | 45.0% |
| !! | TTATTTAAGGGGCACCACGA+GGG | + | chr3_2:82891830-82891849 | Msa0431020:intron | 45.0% |
| !!! | TGAAAAGGCATTTTCCCTCG+TGG | - | chr3_2:82891847-82891866 | None:intergenic | 45.0% |
| !! | CAACTCACTAGGGCATTGTT+TGG | + | chr3_2:82892011-82892030 | Msa0431020:intron | 45.0% |
| CTACACTTGTGAGACTGTTC+GGG | - | chr3_2:82892164-82892183 | None:intergenic | 45.0% | |
| ACTCTTGCATCTCAAGCCAT+TGG | + | chr3_2:82892362-82892381 | Msa0431020:CDS | 45.0% | |
| TGTATAGTTGCTGGACTGCT+TGG | + | chr3_2:82892688-82892707 | Msa0431020:intron | 45.0% | |
| CGAGTGATCCATCCCAAATT+AGG | + | chr3_2:82892776-82892795 | Msa0431020:CDS | 45.0% | |
| ! | TCTTTTCTCCTCTCTACCGT+AGG | + | chr3_2:82893001-82893020 | Msa0431020:CDS | 45.0% |
| ! | CCTCTTACAGGAAGCATGAA+TGG | - | chr3_2:82893123-82893142 | None:intergenic | 45.0% |
| CCATTCATGCTTCCTGTAAG+AGG | + | chr3_2:82893120-82893139 | Msa0431020:intron | 45.0% | |
| CAGTGGTCCTACATCATCTA+TGG | - | chr3_2:82893179-82893198 | None:intergenic | 45.0% | |
| GAGTTACATCGTCTATGGAC+TGG | - | chr3_2:82893223-82893242 | None:intergenic | 45.0% | |
| AGGTCAGTAAGAATTGCTGC+TGG | + | chr3_2:82893941-82893960 | Msa0431020:CDS | 45.0% | |
| ATTCTCTACAGACATCGTCG+TGG | + | chr3_2:82894372-82894391 | Msa0431020:CDS | 45.0% | |
| GTCGTGGTCTCAAATGATAC+AGG | + | chr3_2:82894388-82894407 | Msa0431020:CDS | 45.0% | |
| TTCATCAAGCACTTCCTTGG+AGG | + | chr3_2:82894523-82894542 | Msa0431020:CDS | 45.0% | |
| TCATCAAGCACTTCCTTGGA+GGG | + | chr3_2:82894524-82894543 | Msa0431020:CDS | 45.0% | |
| ATGTCTGTGAGGACTTTCAC+TGG | + | chr3_2:82894794-82894813 | Msa0431020:intron | 45.0% | |
| CTTATTGAGTAACTGGGTCC+TGG | - | chr3_2:82894909-82894928 | None:intergenic | 45.0% | |
| CCGCTGCTTATTGAGTAACT+GGG | - | chr3_2:82894915-82894934 | None:intergenic | 45.0% | |
| CCCAGTTACTCAATAAGCAG+CGG | + | chr3_2:82894912-82894931 | Msa0431020:CDS | 45.0% | |
| ACCGCTGCTTATTGAGTAAC+TGG | - | chr3_2:82894916-82894935 | None:intergenic | 45.0% | |
| TAAGCAGCGGTTACAATCTG+AGG | + | chr3_2:82894925-82894944 | Msa0431020:CDS | 45.0% | |
| GCATAAATGACAGCGAAGCA+AGG | - | chr3_2:82895039-82895058 | None:intergenic | 45.0% | |
| AATCAACAGGGCAGGAACTT+CGG | + | chr3_2:82895133-82895152 | Msa0431020:intron | 45.0% | |
| CGAAGTAGATTCGCGTACTA+CGG | + | chr3_2:82895309-82895328 | Msa0431020:three_prime_UTR | 45.0% | |
| CAAGGCCAAACAACCTGCAA+TGG | - | chr3_2:82892479-82892498 | None:intergenic | 50.0% | |
| !! | GGTTGTTTGGCCTTGACAGT+TGG | + | chr3_2:82892484-82892503 | Msa0431020:intron | 50.0% |
| TAACTGCTGTGGTGTCTGCA+TGG | + | chr3_2:82892978-82892997 | Msa0431020:CDS | 50.0% | |
| TCAGATTGCCTACGGTAGAG+AGG | - | chr3_2:82893012-82893031 | None:intergenic | 50.0% | |
| GGCCAAGAAACAGCTACACA+AGG | - | chr3_2:82893846-82893865 | None:intergenic | 50.0% | |
| !! | GTGTAGCTGTTTCTTGGCCT+TGG | + | chr3_2:82893847-82893866 | Msa0431020:intron | 50.0% |
| AATTGCTGCTGGTGAAGCAC+TGG | + | chr3_2:82893952-82893971 | Msa0431020:CDS | 50.0% | |
| AATCTTTCTGTGGAGGCTGG+TGG | + | chr3_2:82894118-82894137 | Msa0431020:CDS | 50.0% | |
| CATCAAGCACTTCCTTGGAG+GGG | + | chr3_2:82894525-82894544 | Msa0431020:CDS | 50.0% | |
| ATCAAGCACTTCCTTGGAGG+GGG | + | chr3_2:82894526-82894545 | Msa0431020:CDS | 50.0% | |
| GTTTAATGAACCCCCCTCCA+AGG | - | chr3_2:82894540-82894559 | None:intergenic | 50.0% | |
| CCTAATACCACGGAGGAAGA+GGG | - | chr3_2:82894658-82894677 | None:intergenic | 50.0% | |
| TCCTAATACCACGGAGGAAG+AGG | - | chr3_2:82894659-82894678 | None:intergenic | 50.0% | |
| TCGTTGTCCTAATACCACGG+AGG | - | chr3_2:82894665-82894684 | None:intergenic | 50.0% | |
| GGCGAACATAGAATGTCTGG+TGG | + | chr3_2:82894737-82894756 | Msa0431020:CDS | 50.0% | |
| CCAGACAACACAGCAATCAG+CGG | - | chr3_2:82895267-82895286 | None:intergenic | 50.0% | |
| TCTGTGGAGGCTGGTGGAAA+AGG | + | chr3_2:82894124-82894143 | Msa0431020:CDS | 55.0% | |
| TCAAGCACTTCCTTGGAGGG+GGG | + | chr3_2:82894527-82894546 | Msa0431020:CDS | 55.0% | |
| TTTCTGACCCTCTTCCTCCG+TGG | + | chr3_2:82894648-82894667 | Msa0431020:intron | 55.0% | |
| CCCTCTTCCTCCGTGGTATT+AGG | + | chr3_2:82894655-82894674 | Msa0431020:intron | 55.0% | |
| ! | CCGCTGATTGCTGTGTTGTC+TGG | + | chr3_2:82895264-82895283 | Msa0431020:three_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 82891149 | 82895506 | 82891149 | ID=Msa0431020;Name=Msa0431020 |
| chr3_2 | mRNA | 82891149 | 82895506 | 82891149 | ID=Msa0431020-mRNA-1;Parent=Msa0431020;Name=Msa0431020-mRNA-1;_AED=0.15;_eAED=0.15;_QI=303|0.91|0.92|1|1|1|13|320|450 |
| chr3_2 | exon | 82891149 | 82891461 | 82891149 | ID=Msa0431020-mRNA-1:exon:23106;Parent=Msa0431020-mRNA-1 |
| chr3_2 | exon | 82891575 | 82891743 | 82891575 | ID=Msa0431020-mRNA-1:exon:23107;Parent=Msa0431020-mRNA-1 |
| chr3_2 | exon | 82891839 | 82891919 | 82891839 | ID=Msa0431020-mRNA-1:exon:23108;Parent=Msa0431020-mRNA-1 |
| chr3_2 | exon | 82892289 | 82892383 | 82892289 | ID=Msa0431020-mRNA-1:exon:23109;Parent=Msa0431020-mRNA-1 |
| chr3_2 | exon | 82892485 | 82892588 | 82892485 | ID=Msa0431020-mRNA-1:exon:23110;Parent=Msa0431020-mRNA-1 |
| chr3_2 | exon | 82892695 | 82892805 | 82892695 | ID=Msa0431020-mRNA-1:exon:23111;Parent=Msa0431020-mRNA-1 |
| chr3_2 | exon | 82892947 | 82893077 | 82892947 | ID=Msa0431020-mRNA-1:exon:23112;Parent=Msa0431020-mRNA-1 |
| chr3_2 | exon | 82893901 | 82894210 | 82893901 | ID=Msa0431020-mRNA-1:exon:23113;Parent=Msa0431020-mRNA-1 |
| chr3_2 | exon | 82894332 | 82894409 | 82894332 | ID=Msa0431020-mRNA-1:exon:23114;Parent=Msa0431020-mRNA-1 |
| chr3_2 | exon | 82894517 | 82894567 | 82894517 | ID=Msa0431020-mRNA-1:exon:23115;Parent=Msa0431020-mRNA-1 |
| chr3_2 | exon | 82894677 | 82894766 | 82894677 | ID=Msa0431020-mRNA-1:exon:23116;Parent=Msa0431020-mRNA-1 |
| chr3_2 | exon | 82894869 | 82894946 | 82894869 | ID=Msa0431020-mRNA-1:exon:23117;Parent=Msa0431020-mRNA-1 |
| chr3_2 | exon | 82895142 | 82895506 | 82895142 | ID=Msa0431020-mRNA-1:exon:23118;Parent=Msa0431020-mRNA-1 |
| chr3_2 | five_prime_UTR | 82891149 | 82891451 | 82891149 | ID=Msa0431020-mRNA-1:five_prime_utr;Parent=Msa0431020-mRNA-1 |
| chr3_2 | CDS | 82891452 | 82891461 | 82891452 | ID=Msa0431020-mRNA-1:cds;Parent=Msa0431020-mRNA-1 |
| chr3_2 | CDS | 82891575 | 82891743 | 82891575 | ID=Msa0431020-mRNA-1:cds;Parent=Msa0431020-mRNA-1 |
| chr3_2 | CDS | 82891839 | 82891919 | 82891839 | ID=Msa0431020-mRNA-1:cds;Parent=Msa0431020-mRNA-1 |
| chr3_2 | CDS | 82892289 | 82892383 | 82892289 | ID=Msa0431020-mRNA-1:cds;Parent=Msa0431020-mRNA-1 |
| chr3_2 | CDS | 82892485 | 82892588 | 82892485 | ID=Msa0431020-mRNA-1:cds;Parent=Msa0431020-mRNA-1 |
| chr3_2 | CDS | 82892695 | 82892805 | 82892695 | ID=Msa0431020-mRNA-1:cds;Parent=Msa0431020-mRNA-1 |
| chr3_2 | CDS | 82892947 | 82893077 | 82892947 | ID=Msa0431020-mRNA-1:cds;Parent=Msa0431020-mRNA-1 |
| chr3_2 | CDS | 82893901 | 82894210 | 82893901 | ID=Msa0431020-mRNA-1:cds;Parent=Msa0431020-mRNA-1 |
| chr3_2 | CDS | 82894332 | 82894409 | 82894332 | ID=Msa0431020-mRNA-1:cds;Parent=Msa0431020-mRNA-1 |
| chr3_2 | CDS | 82894517 | 82894567 | 82894517 | ID=Msa0431020-mRNA-1:cds;Parent=Msa0431020-mRNA-1 |
| chr3_2 | CDS | 82894677 | 82894766 | 82894677 | ID=Msa0431020-mRNA-1:cds;Parent=Msa0431020-mRNA-1 |
| chr3_2 | CDS | 82894869 | 82894946 | 82894869 | ID=Msa0431020-mRNA-1:cds;Parent=Msa0431020-mRNA-1 |
| chr3_2 | CDS | 82895142 | 82895186 | 82895142 | ID=Msa0431020-mRNA-1:cds;Parent=Msa0431020-mRNA-1 |
| chr3_2 | three_prime_UTR | 82895187 | 82895506 | 82895187 | ID=Msa0431020-mRNA-1:three_prime_utr;Parent=Msa0431020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
