AlfalfaGEDB | Msa1077970

M. sativa cultivar zhongmu-4 / Msa1077970

KEGG: K13265
GO: -
PFAM: PF01370.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1077970	XP_003623704.1	91.418	268	0	2	1	245	59	326	2.37e-172	488

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1077970	sp\|Q40316\|VESTR_MEDSA	91.045	268	1	2	1	245	59	326	7.05e-175	486

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1077970	A2Q3W4	91.418	268	0	2	1	245	59	326	1.13e-172	488

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa1077970	0.818596	1.805253e-52	-8.615850e-47
Msa0004180	Msa1077970	-0.815444	9.214016e-52	-8.615850e-47
Msa0006480	Msa1077970	0.810865	9.317685e-51	-8.615850e-47
Msa0011410	Msa1077970	-0.828672	7.891452e-55	-8.615850e-47
Msa0011440	Msa1077970	-0.832461	9.330125e-56	-8.615850e-47
Msa0011450	Msa1077970	-0.801938	7.109790e-49	-8.615850e-47
Msa0013270	Msa1077970	0.814564	1.444481e-51	-8.615850e-47
Msa0014280	Msa1077970	0.842054	3.268180e-58	-8.615850e-47
Msa0025570	Msa1077970	0.812020	5.229925e-51	-8.615850e-47
Msa0026420	Msa1077970	0.815534	8.801946e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1077970	MtrunA17_Chr7g0245631	91.418	268	0	2	1	245	59	326	2.18e-176	488
Msa1077970	MtrunA17_Chr7g0245741	60.075	268	84	2	1	245	59	326	5.59e-113	327
Msa1077970	MtrunA17_Chr7g0245691	57.934	271	88	3	1	245	60	330	9.92e-111	321
Msa1077970	MtrunA17_Chr7g0245671	57.565	271	89	3	1	245	59	329	6.94e-109	317
Msa1077970	MtrunA17_Chr7g0245641	57.407	270	90	3	1	245	97	366	5.93e-108	315
Msa1077970	MtrunA17_Chr7g0245711	57.463	268	91	2	1	245	21	288	1.05e-106	310
Msa1077970	MtrunA17_Chr7g0245731	57.463	268	91	2	1	245	109	376	4.49e-105	308
Msa1077970	MtrunA17_Chr4g0010991	41.852	270	132	4	1	245	60	329	3.55e-63	200
Msa1077970	MtrunA17_Chr1g0155411	37.226	274	137	5	1	245	58	325	2.31e-57	186
Msa1077970	MtrunA17_Chr1g0155431	37.956	274	135	5	1	245	58	325	5.69e-57	184

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1077970	AT2G45400.3	40.876	274	132	5	1	245	35	307	7.36e-61	194
Msa1077970	AT2G45400.1	40.876	274	132	5	1	245	92	364	4.50e-60	194
Msa1077970	AT5G42800.1	37.956	274	135	6	1	245	58	325	3.93e-56	184
Msa1077970	AT1G61720.1	35.000	280	143	8	1	245	62	337	2.02e-47	160
Msa1077970	AT2G45400.2	40.351	228	107	5	1	199	92	319	4.02e-46	156
Msa1077970	AT4G35420.1	37.546	269	139	6	1	245	58	321	1.52e-42	147
Msa1077970	AT2G02400.1	31.835	267	158	5	1	245	54	318	3.28e-33	122
Msa1077970	AT4G27250.2	27.407	270	160	5	1	236	60	327	9.43e-30	114
Msa1077970	AT5G58490.1	32.090	268	156	6	1	245	59	323	1.78e-28	110
Msa1077970	AT4G27250.1	26.619	278	162	5	1	236	60	337	3.18e-28	110

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Find 44 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAAAACGACCAACGATAAA+AGG	0.269364	7_2:+76810042	None:intergenic
ACAGCATAATTCCAACCAAA+TGG	0.504930	7_2:+76810141	None:intergenic
ACGAAGAAACTCGTGGATGC+TGG	0.539479	7_2:-76809353	Msa1077970:CDS
ACTAACAGTAGATGAGTTGA+AGG	0.472358	7_2:-76809408	Msa1077970:CDS
ACTGTCAGGGTTGCTTAGAT+CGG	0.512980	7_2:+76810525	None:intergenic
ACTGTTAGTATTTGATATTC+TGG	0.207664	7_2:+76809422	None:intergenic
AGGGCTTTCTCAATAGAATC+AGG	0.454202	7_2:+76810006	None:intergenic
AGGTTTATATACACTTCAAG+TGG	0.594598	7_2:-76810249	Msa1077970:CDS
AGTCAATTGGTGAAGCGGTG+TGG	0.629454	7_2:+76810467	None:intergenic
AGTTGAGACATCTCTTCAAT+AGG	0.440279	7_2:+76809461	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGTTTATATACACTTCAAG+TGG	-	chr7_2:76809569-76809588	Msa1077970:CDS	30.0%
CATACCTAATACCAAAACAA+GGG	+	chr7_2:76809834-76809853	None:intergenic	30.0%
TCATACCTAATACCAAAACA+AGG	+	chr7_2:76809835-76809854	None:intergenic	30.0%
AAATTATGACCTATGAAGCA+CGG	-	chr7_2:76809905-76809924	Msa1077970:intron	30.0%
TTCAGTGTAATTACATGTGT+CGG	-	chr7_2:76809997-76810016	Msa1077970:CDS	30.0%
TCTTCAATAGGTACAATGAA+TGG	+	chr7_2:76810348-76810367	None:intergenic	30.0%
AGTTTCTTCGTGTTTAAATC+TGG	+	chr7_2:76810456-76810475	None:intergenic	30.0%
AGGTTTATATACACTTCAAG+TGG	-	chr7_2:76809569-76809588	Msa1077970:CDS	30.0%
CATACCTAATACCAAAACAA+GGG	+	chr7_2:76809834-76809853	None:intergenic	30.0%
TCATACCTAATACCAAAACA+AGG	+	chr7_2:76809835-76809854	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	76809277	76810563	76809277	ID=Msa1077970;Name=Msa1077970
chr7_2	mRNA	76809277	76810563	76809277	ID=Msa1077970-mRNA-1;Parent=Msa1077970;Name=Msa1077970-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|0\|0\|1\|0.33\|0.25\|4\|0\|245
chr7_2	exon	76810441	76810563	76810441	ID=Msa1077970-mRNA-1:exon:18709;Parent=Msa1077970-mRNA-1
chr7_2	exon	76810143	76810280	76810143	ID=Msa1077970-mRNA-1:exon:18708;Parent=Msa1077970-mRNA-1
chr7_2	exon	76809992	76810133	76809992	ID=Msa1077970-mRNA-1:exon:18707;Parent=Msa1077970-mRNA-1
chr7_2	exon	76809277	76809611	76809277	ID=Msa1077970-mRNA-1:exon:18706;Parent=Msa1077970-mRNA-1
chr7_2	CDS	76810441	76810563	76810441	ID=Msa1077970-mRNA-1:cds;Parent=Msa1077970-mRNA-1
chr7_2	CDS	76810143	76810280	76810143	ID=Msa1077970-mRNA-1:cds;Parent=Msa1077970-mRNA-1
chr7_2	CDS	76809992	76810133	76809992	ID=Msa1077970-mRNA-1:cds;Parent=Msa1077970-mRNA-1
chr7_2	CDS	76809277	76809611	76809277	ID=Msa1077970-mRNA-1:cds;Parent=Msa1077970-mRNA-1

Gene Sequence

>Msa1077970

CTACATTTTTTCAACGCCGATCTAAGCAACCCTGACAGTTTCGCTGCAGCAATCGAAGGCTGTGTCGGGATATTCCACACCGCTTCACCAATTGACTTCGCCGTGAGTGAACCAGAAGAAATAACAGTGAAGAGGTTTATATACACTTCAAGTGGTTCTGCTGTTTCATTCAATGGAAAAGACAAAGATGTGTTGGATGAGAGTGATTGGAGTGATGTTGATTTGCTTAGAAGTGTTAAGCCATTTGGTTGGAATTATGCTACTTTGGCTGAGAAAGCTGTTCTTGAATTTGGTGAACAAAATGGGATTGATGTTGTTACTTTGATTCTTCCTTTTATCGTTGGTCGTTTTGTTTGTCCTAAGCTTCCTGATTCTATTGAGAAAGCCCTTGTTTTGGTATTAGGCAAAAAAGAACAAATTGGTGTGACACGTTTCCACATGGTACATGTTGATGATGTGGCTAGAGCACATATATATCTACTTGAGAATTCTGTTCCAGGAGGTAGATACAATTGCTCACCATTCATTGTACCTATTGAAGAGATGTCTCAACTTCTTTCAGCCAAATATCCAGAATATCAAATACTAACAGTAGATGAGTTGAAGGAAATTAAAGGTGCAAGGTTACCAGATTTAAACACGAAGAAACTCGTGGATGCTGGTTTCGAATTTAAGTACACTATCGAAGATATGTTCGACGATGCAATTCAATGTTGCAAGGAGAAAGGCTATCTCTAA

Protein sequence

>Msa1077970

LHFFNADLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEITVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYATLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVDAGFEFKYTIEDMFDDAIQCCKEKGYL*