AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1077970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1077970 MtrunA17_Chr7g0245631 91.418 268 0 2 1 245 59 326 2.18e-176 488
Msa1077970 MtrunA17_Chr7g0245741 60.075 268 84 2 1 245 59 326 5.59e-113 327
Msa1077970 MtrunA17_Chr7g0245691 57.934 271 88 3 1 245 60 330 9.92e-111 321
Msa1077970 MtrunA17_Chr7g0245671 57.565 271 89 3 1 245 59 329 6.94e-109 317
Msa1077970 MtrunA17_Chr7g0245641 57.407 270 90 3 1 245 97 366 5.93e-108 315
Msa1077970 MtrunA17_Chr7g0245711 57.463 268 91 2 1 245 21 288 1.05e-106 310
Msa1077970 MtrunA17_Chr7g0245731 57.463 268 91 2 1 245 109 376 4.49e-105 308
Msa1077970 MtrunA17_Chr4g0010991 41.852 270 132 4 1 245 60 329 3.55e-63 200
Msa1077970 MtrunA17_Chr1g0155411 37.226 274 137 5 1 245 58 325 2.31e-57 186
Msa1077970 MtrunA17_Chr1g0155431 37.956 274 135 5 1 245 58 325 5.69e-57 184
Msa1077970 MtrunA17_Chr4g0048961 31.884 276 153 5 1 243 63 336 1.40e-43 150
Msa1077970 MtrunA17_Chr4g0042101 31.010 287 152 6 1 245 71 353 1.82e-42 147
Msa1077970 MtrunA17_Chr2g0331211 34.686 271 145 8 1 245 55 319 7.15e-35 127
Msa1077970 MtrunA17_Chr5g0423551 30.337 267 163 4 1 245 54 319 8.67e-32 119
Msa1077970 MtrunA17_Chr8g0364051 31.250 272 152 6 1 245 58 321 5.32e-30 114
Msa1077970 MtrunA17_Chr5g0431311 31.835 267 158 5 1 245 55 319 9.62e-30 113
Msa1077970 MtrunA17_Chr8g0363831 31.835 267 151 6 1 242 59 319 5.52e-29 111
Msa1077970 MtrunA17_Chr3g0106111 30.712 267 161 5 1 245 55 319 1.36e-27 107
Msa1077970 MtrunA17_Chr4g0039321 33.028 218 122 3 1 195 59 275 1.61e-27 107
Msa1077970 MtrunA17_Chr2g0281991 30.903 288 151 11 1 245 58 340 7.13e-26 103
Msa1077970 MtrunA17_Chr3g0077231 30.734 218 127 3 1 195 56 272 9.56e-24 97.4
Msa1077970 MtrunA17_Chr3g0077221 30.734 218 127 3 1 195 60 276 1.01e-23 97.4
Msa1077970 MtrunA17_Chr4g0039311 30.275 218 128 3 1 195 61 277 5.29e-23 95.5
Msa1077970 MtrunA17_Chr4g0002661 28.625 269 161 9 1 245 62 323 1.11e-21 91.7
Msa1077970 MtrunA17_Chr2g0333781 29.213 267 161 8 1 245 69 329 1.25e-21 92.0
Msa1077970 MtrunA17_Chr7g0275521 29.268 287 158 11 1 245 57 340 1.59e-21 91.7
Msa1077970 MtrunA17_Chr4g0001321 28.302 265 166 7 1 245 66 326 7.91e-21 89.7
Msa1077970 MtrunA17_Chr2g0291541 28.090 267 165 7 3 245 63 326 7.24e-20 87.0
Msa1077970 MtrunA17_Chr2g0282011 29.021 286 155 10 1 243 58 338 5.92e-18 81.6
Msa1077970 MtrunA17_Chr4g0002961 28.938 273 155 9 1 245 62 323 6.49e-17 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1077970 AT2G45400.3 40.876 274 132 5 1 245 35 307 7.36e-61 194
Msa1077970 AT2G45400.1 40.876 274 132 5 1 245 92 364 4.50e-60 194
Msa1077970 AT5G42800.1 37.956 274 135 6 1 245 58 325 3.93e-56 184
Msa1077970 AT1G61720.1 35.000 280 143 8 1 245 62 337 2.02e-47 160
Msa1077970 AT2G45400.2 40.351 228 107 5 1 199 92 319 4.02e-46 156
Msa1077970 AT4G35420.1 37.546 269 139 6 1 245 58 321 1.52e-42 147
Msa1077970 AT2G02400.1 31.835 267 158 5 1 245 54 318 3.28e-33 122
Msa1077970 AT4G27250.2 27.407 270 160 5 1 236 60 327 9.43e-30 114
Msa1077970 AT5G58490.1 32.090 268 156 6 1 245 59 323 1.78e-28 110
Msa1077970 AT4G27250.1 26.619 278 162 5 1 236 60 337 3.18e-28 110
Msa1077970 AT1G09480.2 33.582 268 152 5 1 245 58 322 4.57e-28 109
Msa1077970 AT1G68540.1 29.259 270 164 5 1 245 54 321 8.64e-28 108
Msa1077970 AT1G09480.1 33.582 268 152 5 1 245 105 369 1.05e-27 109
Msa1077970 AT1G25460.1 29.368 269 164 4 1 245 53 319 6.98e-27 106
Msa1077970 AT5G19440.1 32.342 269 152 6 1 244 60 323 1.81e-26 105
Msa1077970 AT1G51410.1 30.000 270 159 6 1 245 59 323 2.47e-26 104
Msa1077970 AT2G45400.4 39.264 163 71 4 1 135 92 254 2.51e-26 103
Msa1077970 AT1G09510.1 32.453 265 153 6 1 242 58 319 1.04e-25 103
Msa1077970 AT1G66800.1 29.811 265 162 5 1 245 58 318 6.39e-25 100
Msa1077970 AT1G09490.2 30.970 268 159 5 1 245 27 291 1.79e-24 99.0
Msa1077970 AT1G09490.1 30.970 268 159 5 1 245 58 322 2.81e-24 99.4
Msa1077970 AT1G15950.3 29.771 262 166 3 1 245 62 322 6.30e-24 98.6
Msa1077970 AT1G15950.1 29.771 262 166 3 1 245 62 322 6.30e-24 98.6
Msa1077970 AT1G68540.2 29.952 207 140 3 42 245 10 214 5.70e-23 93.6
Msa1077970 AT1G15950.2 29.600 250 159 2 1 233 62 311 3.48e-22 93.6
Msa1077970 AT1G80820.1 29.213 267 161 7 1 245 57 317 4.29e-22 93.6
Msa1077970 AT1G76470.1 29.389 262 155 8 1 236 56 313 1.07e-20 89.4
Msa1077970 AT1G15950.6 30.841 214 131 2 1 197 62 275 9.52e-19 83.2
Msa1077970 AT1G09500.2 30.357 224 131 3 1 200 24 246 9.64e-19 83.6
Msa1077970 AT1G09500.3 30.594 219 127 3 1 195 58 275 1.29e-18 83.2
Msa1077970 AT1G15950.4 30.841 214 131 2 1 197 62 275 1.37e-18 83.2
Msa1077970 AT1G09500.1 30.357 224 131 3 1 200 58 280 1.52e-18 83.6
Msa1077970 AT1G15950.5 30.841 214 131 2 1 197 62 275 1.62e-18 82.8
Msa1077970 AT2G33590.1 30.000 260 147 7 1 233 58 309 6.01e-18 81.6
Msa1077970 AT1G80820.2 30.137 219 126 6 1 197 57 270 3.51e-17 79.0
Msa1077970 AT1G15950.7 28.837 215 150 2 33 245 11 224 5.70e-16 75.1
Msa1077970 AT2G33600.1 31.336 217 126 4 1 194 58 274 1.83e-15 74.7

Find 44 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTGATATTCTGGATATT+TGG 0.178162 7_2:+76809430 None:intergenic
GAGAAAGCTGTTCTTGAATT+TGG 0.206019 7_2:-76810102 Msa1077970:CDS
ACTGTTAGTATTTGATATTC+TGG 0.207664 7_2:+76809422 None:intergenic
CTTGAATTTGGTGAACAAAA+TGG 0.220583 7_2:-76810090 Msa1077970:CDS
ACAAAACGACCAACGATAAA+AGG 0.269364 7_2:+76810042 None:intergenic
GATGAGTTGAAGGAAATTAA+AGG 0.307837 7_2:-76809398 Msa1077970:CDS
GGTTCTGCTGTTTCATTCAA+TGG 0.327787 7_2:-76810228 Msa1077970:CDS
AGTTTCTTCGTGTTTAAATC+TGG 0.331608 7_2:+76809365 None:intergenic
CTTAGAAGTGTTAAGCCATT+TGG 0.344973 7_2:-76810156 Msa1077970:CDS
TATTGAGAAAGCCCTTGTTT+TGG 0.381480 7_2:-76809998 Msa1077970:CDS
TTGAATTTGGTGAACAAAAT+GGG 0.381597 7_2:-76810089 Msa1077970:CDS
CTACTTGAGAATTCTGTTCC+AGG 0.387686 7_2:-76809515 Msa1077970:CDS
ATTGCTGCAGCGAAACTGTC+AGG 0.415334 7_2:+76810511 None:intergenic
TCACTCACGGCGAAGTCAAT+TGG 0.434477 7_2:+76810454 None:intergenic
AGTTGAGACATCTCTTCAAT+AGG 0.440279 7_2:+76809461 None:intergenic
TCAATAGAATCAGGAAGCTT+AGG 0.441975 7_2:+76810015 None:intergenic
AGGGCTTTCTCAATAGAATC+AGG 0.454202 7_2:+76810006 None:intergenic
ACTAACAGTAGATGAGTTGA+AGG 0.472358 7_2:-76809408 Msa1077970:CDS
ATGTGTTGGATGAGAGTGAT+TGG 0.475115 7_2:-76810194 Msa1077970:CDS
CAGCAATCGAAGGCTGTGTC+GGG 0.486420 7_2:-76810495 Msa1077970:CDS
ACAGCATAATTCCAACCAAA+TGG 0.504930 7_2:+76810141 None:intergenic
ACTGTCAGGGTTGCTTAGAT+CGG 0.512980 7_2:+76810525 None:intergenic
TCTTCAATAGGTACAATGAA+TGG 0.521628 7_2:+76809473 None:intergenic
GAGCAATTGTATCTACCTCC+TGG 0.524842 7_2:+76809497 None:intergenic
GCAGCAATCGAAGGCTGTGT+CGG 0.527220 7_2:-76810496 Msa1077970:CDS
ATTCAATGTTGCAAGGAGAA+AGG 0.530160 7_2:-76809287 Msa1077970:CDS
TGGAAAAGACAAAGATGTGT+TGG 0.538009 7_2:-76810208 Msa1077970:CDS
ACGAAGAAACTCGTGGATGC+TGG 0.539479 7_2:-76809353 Msa1077970:CDS
GAAGTGTTAAGCCATTTGGT+TGG 0.545559 7_2:-76810152 Msa1077970:CDS
TGAAGGAAATTAAAGGTGCA+AGG 0.554380 7_2:-76809391 Msa1077970:CDS
AGGTTTATATACACTTCAAG+TGG 0.594598 7_2:-76810249 Msa1077970:CDS
TCATACCTAATACCAAAACA+AGG 0.596808 7_2:+76809986 None:intergenic
GGCGAAGTCAATTGGTGAAG+CGG 0.597111 7_2:+76810462 None:intergenic
TGGTGTGACACGTTTCCACA+TGG 0.600639 7_2:-76809573 Msa1077970:CDS
TGAATTCAAAGACAGTGAAG+AGG 0.602314 7_2:-76810269 Msa1077970:intron
CGATGCAATTCAATGTTGCA+AGG 0.602642 7_2:-76809294 Msa1077970:CDS
AGTTTCGCTGCAGCAATCGA+AGG 0.607453 7_2:-76810505 Msa1077970:CDS
TTGCTGCAGCGAAACTGTCA+GGG 0.625959 7_2:+76810512 None:intergenic
AGTCAATTGGTGAAGCGGTG+TGG 0.629454 7_2:+76810467 None:intergenic
CATGGTACATGTTGATGATG+TGG 0.642320 7_2:-76809555 Msa1077970:CDS
TTTAAACACGAAGAAACTCG+TGG 0.659776 7_2:-76809360 Msa1077970:CDS
CATACCTAATACCAAAACAA+GGG 0.680642 7_2:+76809987 None:intergenic
CTTGAGAATTCTGTTCCAGG+AGG 0.684561 7_2:-76809512 Msa1077970:CDS
CATCATCAACATGTACCATG+TGG 0.710484 7_2:+76809558 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! NNNNNNNNNACTATTTCTTC+TGG + chr7_2:76809391-76809410 None:intergenic 15.0%
!!! NNNNNNNNNACTATTTCTTC+TGG + chr7_2:76809391-76809410 None:intergenic 15.0%
!! AAATAAACATGAGTAGAATA+AGG + chr7_2:76809866-76809885 None:intergenic 20.0%
!! TATTTGATATTCTGGATATT+TGG + chr7_2:76810391-76810410 None:intergenic 20.0%
!! AAATAAACATGAGTAGAATA+AGG + chr7_2:76809866-76809885 None:intergenic 20.0%
!! TATTTGATATTCTGGATATT+TGG + chr7_2:76810391-76810410 None:intergenic 20.0%
!! TTGAATTTGGTGAACAAAAT+GGG - chr7_2:76809729-76809748 Msa1077970:intron 25.0%
! TCTCAAATTATTAACAGTGT+CGG + chr7_2:76809966-76809985 None:intergenic 25.0%
!! GTCAATTTAAAACCTAAACT+CGG - chr7_2:76810164-76810183 Msa1077970:CDS 25.0%
! ACTGTTAGTATTTGATATTC+TGG + chr7_2:76810399-76810418 None:intergenic 25.0%
!! TTGAATTTGGTGAACAAAAT+GGG - chr7_2:76809729-76809748 Msa1077970:intron 25.0%
! TCTCAAATTATTAACAGTGT+CGG + chr7_2:76809966-76809985 None:intergenic 25.0%
!! GTCAATTTAAAACCTAAACT+CGG - chr7_2:76810164-76810183 Msa1077970:CDS 25.0%
! ACTGTTAGTATTTGATATTC+TGG + chr7_2:76810399-76810418 None:intergenic 25.0%
AGGTTTATATACACTTCAAG+TGG - chr7_2:76809569-76809588 Msa1077970:CDS 30.0%
!! TTATGCTGTTTCTAAGACTT+TGG - chr7_2:76809691-76809710 Msa1077970:intron 30.0%
! CTTGAATTTGGTGAACAAAA+TGG - chr7_2:76809728-76809747 Msa1077970:intron 30.0%
! TTGATTCTTCCTTTTATCGT+TGG - chr7_2:76809767-76809786 Msa1077970:intron 30.0%
CATACCTAATACCAAAACAA+GGG + chr7_2:76809834-76809853 None:intergenic 30.0%
TCATACCTAATACCAAAACA+AGG + chr7_2:76809835-76809854 None:intergenic 30.0%
AAATTATGACCTATGAAGCA+CGG - chr7_2:76809905-76809924 Msa1077970:intron 30.0%
TTCAGTGTAATTACATGTGT+CGG - chr7_2:76809997-76810016 Msa1077970:CDS 30.0%
! ATGAGATCGTTGATAAAGAT+CGG - chr7_2:76810116-76810135 Msa1077970:intron 30.0%
TCTTCAATAGGTACAATGAA+TGG + chr7_2:76810348-76810367 None:intergenic 30.0%
! GATGAGTTGAAGGAAATTAA+AGG - chr7_2:76810420-76810439 Msa1077970:intron 30.0%
AGTTTCTTCGTGTTTAAATC+TGG + chr7_2:76810456-76810475 None:intergenic 30.0%
AGGTTTATATACACTTCAAG+TGG - chr7_2:76809569-76809588 Msa1077970:CDS 30.0%
!! TTATGCTGTTTCTAAGACTT+TGG - chr7_2:76809691-76809710 Msa1077970:intron 30.0%
! CTTGAATTTGGTGAACAAAA+TGG - chr7_2:76809728-76809747 Msa1077970:intron 30.0%
! TTGATTCTTCCTTTTATCGT+TGG - chr7_2:76809767-76809786 Msa1077970:intron 30.0%
CATACCTAATACCAAAACAA+GGG + chr7_2:76809834-76809853 None:intergenic 30.0%
TCATACCTAATACCAAAACA+AGG + chr7_2:76809835-76809854 None:intergenic 30.0%
AAATTATGACCTATGAAGCA+CGG - chr7_2:76809905-76809924 Msa1077970:intron 30.0%
TTCAGTGTAATTACATGTGT+CGG - chr7_2:76809997-76810016 Msa1077970:CDS 30.0%
! ATGAGATCGTTGATAAAGAT+CGG - chr7_2:76810116-76810135 Msa1077970:intron 30.0%
TCTTCAATAGGTACAATGAA+TGG + chr7_2:76810348-76810367 None:intergenic 30.0%
! GATGAGTTGAAGGAAATTAA+AGG - chr7_2:76810420-76810439 Msa1077970:intron 30.0%
AGTTTCTTCGTGTTTAAATC+TGG + chr7_2:76810456-76810475 None:intergenic 30.0%
!! TATTTCTTCTGGTTCACTCA+CGG + chr7_2:76809380-76809399 None:intergenic 35.0%
TGAATTCAAAGACAGTGAAG+AGG - chr7_2:76809549-76809568 Msa1077970:CDS 35.0%
TGGAAAAGACAAAGATGTGT+TGG - chr7_2:76809610-76809629 Msa1077970:intron 35.0%
!! CTTAGAAGTGTTAAGCCATT+TGG - chr7_2:76809662-76809681 Msa1077970:intron 35.0%
ACAGCATAATTCCAACCAAA+TGG + chr7_2:76809680-76809699 None:intergenic 35.0%
GAGAAAGCTGTTCTTGAATT+TGG - chr7_2:76809716-76809735 Msa1077970:intron 35.0%
ACAAAACGACCAACGATAAA+AGG + chr7_2:76809779-76809798 None:intergenic 35.0%
TCAATAGAATCAGGAAGCTT+AGG + chr7_2:76809806-76809825 None:intergenic 35.0%
!! TATTGAGAAAGCCCTTGTTT+TGG - chr7_2:76809820-76809839 Msa1077970:intron 35.0%
!!! AAAGCCCTTGTTTTGGTATT+AGG - chr7_2:76809827-76809846 Msa1077970:intron 35.0%
CAGTCATAATCTATGAAGCA+CGG + chr7_2:76810052-76810071 None:intergenic 35.0%
CAACGATCTCATGATTGAAA+TGG + chr7_2:76810108-76810127 None:intergenic 35.0%
GCAGGCAAAAAAGAACAAAT+TGG - chr7_2:76810225-76810244 Msa1077970:CDS 35.0%
AGTTGAGACATCTCTTCAAT+AGG + chr7_2:76810360-76810379 None:intergenic 35.0%
! ACTAACAGTAGATGAGTTGA+AGG - chr7_2:76810410-76810429 Msa1077970:intron 35.0%
! TGAAGGAAATTAAAGGTGCA+AGG - chr7_2:76810427-76810446 Msa1077970:intron 35.0%
TTTAAACACGAAGAAACTCG+TGG - chr7_2:76810458-76810477 Msa1077970:CDS 35.0%
ATTCAATGTTGCAAGGAGAA+AGG - chr7_2:76810531-76810550 Msa1077970:CDS 35.0%
!! TATTTCTTCTGGTTCACTCA+CGG + chr7_2:76809380-76809399 None:intergenic 35.0%
TGAATTCAAAGACAGTGAAG+AGG - chr7_2:76809549-76809568 Msa1077970:CDS 35.0%
TGGAAAAGACAAAGATGTGT+TGG - chr7_2:76809610-76809629 Msa1077970:intron 35.0%
!! CTTAGAAGTGTTAAGCCATT+TGG - chr7_2:76809662-76809681 Msa1077970:intron 35.0%
ACAGCATAATTCCAACCAAA+TGG + chr7_2:76809680-76809699 None:intergenic 35.0%
GAGAAAGCTGTTCTTGAATT+TGG - chr7_2:76809716-76809735 Msa1077970:intron 35.0%
ACAAAACGACCAACGATAAA+AGG + chr7_2:76809779-76809798 None:intergenic 35.0%
TCAATAGAATCAGGAAGCTT+AGG + chr7_2:76809806-76809825 None:intergenic 35.0%
!! TATTGAGAAAGCCCTTGTTT+TGG - chr7_2:76809820-76809839 Msa1077970:intron 35.0%
!!! AAAGCCCTTGTTTTGGTATT+AGG - chr7_2:76809827-76809846 Msa1077970:intron 35.0%
CAGTCATAATCTATGAAGCA+CGG + chr7_2:76810052-76810071 None:intergenic 35.0%
CAACGATCTCATGATTGAAA+TGG + chr7_2:76810108-76810127 None:intergenic 35.0%
GCAGGCAAAAAAGAACAAAT+TGG - chr7_2:76810225-76810244 Msa1077970:CDS 35.0%
AGTTGAGACATCTCTTCAAT+AGG + chr7_2:76810360-76810379 None:intergenic 35.0%
! ACTAACAGTAGATGAGTTGA+AGG - chr7_2:76810410-76810429 Msa1077970:intron 35.0%
! TGAAGGAAATTAAAGGTGCA+AGG - chr7_2:76810427-76810446 Msa1077970:intron 35.0%
TTTAAACACGAAGAAACTCG+TGG - chr7_2:76810458-76810477 Msa1077970:CDS 35.0%
ATTCAATGTTGCAAGGAGAA+AGG - chr7_2:76810531-76810550 Msa1077970:CDS 35.0%
!! GGTTCTGCTGTTTCATTCAA+TGG - chr7_2:76809590-76809609 Msa1077970:CDS 40.0%
ATGTGTTGGATGAGAGTGAT+TGG - chr7_2:76809624-76809643 Msa1077970:intron 40.0%
! GAAGTGTTAAGCCATTTGGT+TGG - chr7_2:76809666-76809685 Msa1077970:intron 40.0%
AGGGCTTTCTCAATAGAATC+AGG + chr7_2:76809815-76809834 None:intergenic 40.0%
GCGGTATCATATTCTGACTT+GGG + chr7_2:76810086-76810105 None:intergenic 40.0%
CGATCTCATGATTGAAATGG+CGG + chr7_2:76810105-76810124 None:intergenic 40.0%
AACGGTCATATACCGAGTTT+AGG + chr7_2:76810179-76810198 None:intergenic 40.0%
GTCAATGGGTAAAGATCGAA+CGG + chr7_2:76810197-76810216 None:intergenic 40.0%
CATCATCAACATGTACCATG+TGG + chr7_2:76810263-76810282 None:intergenic 40.0%
!! CATGGTACATGTTGATGATG+TGG - chr7_2:76810263-76810282 Msa1077970:intron 40.0%
CTACTTGAGAATTCTGTTCC+AGG - chr7_2:76810303-76810322 Msa1077970:intron 40.0%
CGATGCAATTCAATGTTGCA+AGG - chr7_2:76810524-76810543 Msa1077970:CDS 40.0%
!! GGTTCTGCTGTTTCATTCAA+TGG - chr7_2:76809590-76809609 Msa1077970:CDS 40.0%
ATGTGTTGGATGAGAGTGAT+TGG - chr7_2:76809624-76809643 Msa1077970:intron 40.0%
! GAAGTGTTAAGCCATTTGGT+TGG - chr7_2:76809666-76809685 Msa1077970:intron 40.0%
AGGGCTTTCTCAATAGAATC+AGG + chr7_2:76809815-76809834 None:intergenic 40.0%
GCGGTATCATATTCTGACTT+GGG + chr7_2:76810086-76810105 None:intergenic 40.0%
CGATCTCATGATTGAAATGG+CGG + chr7_2:76810105-76810124 None:intergenic 40.0%
AACGGTCATATACCGAGTTT+AGG + chr7_2:76810179-76810198 None:intergenic 40.0%
GTCAATGGGTAAAGATCGAA+CGG + chr7_2:76810197-76810216 None:intergenic 40.0%
CATCATCAACATGTACCATG+TGG + chr7_2:76810263-76810282 None:intergenic 40.0%
!! CATGGTACATGTTGATGATG+TGG - chr7_2:76810263-76810282 Msa1077970:intron 40.0%
CTACTTGAGAATTCTGTTCC+AGG - chr7_2:76810303-76810322 Msa1077970:intron 40.0%
CGATGCAATTCAATGTTGCA+AGG - chr7_2:76810524-76810543 Msa1077970:CDS 40.0%
ACTGTCAGGGTTGCTTAGAT+CGG + chr7_2:76809296-76809315 None:intergenic 45.0%
TGACCTATGAAGCACGGATA+CGG - chr7_2:76809911-76809930 Msa1077970:intron 45.0%
GGCGGTATCATATTCTGACT+TGG + chr7_2:76810087-76810106 None:intergenic 45.0%
!! ACCCATTGACTTTGATGTGC+AGG - chr7_2:76810207-76810226 Msa1077970:CDS 45.0%
GCCTGCACATCAAAGTCAAT+GGG + chr7_2:76810211-76810230 None:intergenic 45.0%
TGCCTGCACATCAAAGTCAA+TGG + chr7_2:76810212-76810231 None:intergenic 45.0%
CTTGAGAATTCTGTTCCAGG+AGG - chr7_2:76810306-76810325 Msa1077970:intron 45.0%
GAGCAATTGTATCTACCTCC+TGG + chr7_2:76810324-76810343 None:intergenic 45.0%
ACTGTCAGGGTTGCTTAGAT+CGG + chr7_2:76809296-76809315 None:intergenic 45.0%
TGACCTATGAAGCACGGATA+CGG - chr7_2:76809911-76809930 Msa1077970:intron 45.0%
GGCGGTATCATATTCTGACT+TGG + chr7_2:76810087-76810106 None:intergenic 45.0%
!! ACCCATTGACTTTGATGTGC+AGG - chr7_2:76810207-76810226 Msa1077970:CDS 45.0%
GCCTGCACATCAAAGTCAAT+GGG + chr7_2:76810211-76810230 None:intergenic 45.0%
TGCCTGCACATCAAAGTCAA+TGG + chr7_2:76810212-76810231 None:intergenic 45.0%
CTTGAGAATTCTGTTCCAGG+AGG - chr7_2:76810306-76810325 Msa1077970:intron 45.0%
GAGCAATTGTATCTACCTCC+TGG + chr7_2:76810324-76810343 None:intergenic 45.0%
TTGCTGCAGCGAAACTGTCA+GGG + chr7_2:76809309-76809328 None:intergenic 50.0%
ATTGCTGCAGCGAAACTGTC+AGG + chr7_2:76809310-76809329 None:intergenic 50.0%
AGTTTCGCTGCAGCAATCGA+AGG - chr7_2:76809313-76809332 Msa1077970:CDS 50.0%
AGTCAATTGGTGAAGCGGTG+TGG + chr7_2:76809354-76809373 None:intergenic 50.0%
GGCGAAGTCAATTGGTGAAG+CGG + chr7_2:76809359-76809378 None:intergenic 50.0%
TCACTCACGGCGAAGTCAAT+TGG + chr7_2:76809367-76809386 None:intergenic 50.0%
AATGCCTAATGCGCCATCGA+CGG + chr7_2:76809516-76809535 None:intergenic 50.0%
TGTCCGTATCCGTGCTTCAT+AGG + chr7_2:76809917-76809936 None:intergenic 50.0%
TACGGACACTGGACATGACA+CGG - chr7_2:76809929-76809948 Msa1077970:intron 50.0%
TATGAAGCACGGACACTCCT+CGG + chr7_2:76810041-76810060 None:intergenic 50.0%
TGGTGTGACACGTTTCCACA+TGG - chr7_2:76810245-76810264 Msa1077970:CDS 50.0%
ACGAAGAAACTCGTGGATGC+TGG - chr7_2:76810465-76810484 Msa1077970:CDS 50.0%
TTGCTGCAGCGAAACTGTCA+GGG + chr7_2:76809309-76809328 None:intergenic 50.0%
ATTGCTGCAGCGAAACTGTC+AGG + chr7_2:76809310-76809329 None:intergenic 50.0%
AGTTTCGCTGCAGCAATCGA+AGG - chr7_2:76809313-76809332 Msa1077970:CDS 50.0%
AGTCAATTGGTGAAGCGGTG+TGG + chr7_2:76809354-76809373 None:intergenic 50.0%
GGCGAAGTCAATTGGTGAAG+CGG + chr7_2:76809359-76809378 None:intergenic 50.0%
TCACTCACGGCGAAGTCAAT+TGG + chr7_2:76809367-76809386 None:intergenic 50.0%
AATGCCTAATGCGCCATCGA+CGG + chr7_2:76809516-76809535 None:intergenic 50.0%
TGTCCGTATCCGTGCTTCAT+AGG + chr7_2:76809917-76809936 None:intergenic 50.0%
TACGGACACTGGACATGACA+CGG - chr7_2:76809929-76809948 Msa1077970:intron 50.0%
TATGAAGCACGGACACTCCT+CGG + chr7_2:76810041-76810060 None:intergenic 50.0%
TGGTGTGACACGTTTCCACA+TGG - chr7_2:76810245-76810264 Msa1077970:CDS 50.0%
ACGAAGAAACTCGTGGATGC+TGG - chr7_2:76810465-76810484 Msa1077970:CDS 50.0%
GCAGCAATCGAAGGCTGTGT+CGG - chr7_2:76809322-76809341 Msa1077970:CDS 55.0%
CAGCAATCGAAGGCTGTGTC+GGG - chr7_2:76809323-76809342 Msa1077970:CDS 55.0%
AGAACCGTCGATGGCGCATT+AGG - chr7_2:76809509-76809528 Msa1077970:CDS 55.0%
TGAAGCACGGATACGGACAC+TGG - chr7_2:76809918-76809937 Msa1077970:intron 55.0%
ATGAAGCACGGACACTCCTC+GGG + chr7_2:76810040-76810059 None:intergenic 55.0%
GCAGCAATCGAAGGCTGTGT+CGG - chr7_2:76809322-76809341 Msa1077970:CDS 55.0%
CAGCAATCGAAGGCTGTGTC+GGG - chr7_2:76809323-76809342 Msa1077970:CDS 55.0%
AGAACCGTCGATGGCGCATT+AGG - chr7_2:76809509-76809528 Msa1077970:CDS 55.0%
TGAAGCACGGATACGGACAC+TGG - chr7_2:76809918-76809937 Msa1077970:intron 55.0%
ATGAAGCACGGACACTCCTC+GGG + chr7_2:76810040-76810059 None:intergenic 55.0%
GTCGTGTCACGCCTAACCCG+AGG - chr7_2:76810021-76810040 Msa1077970:CDS 65.0%
GCACGGACACTCCTCGGGTT+AGG + chr7_2:76810035-76810054 None:intergenic 65.0%
GTCGTGTCACGCCTAACCCG+AGG - chr7_2:76810021-76810040 Msa1077970:CDS 65.0%
GCACGGACACTCCTCGGGTT+AGG + chr7_2:76810035-76810054 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 76809277 76810563 76809277 ID=Msa1077970;Name=Msa1077970
chr7_2 mRNA 76809277 76810563 76809277 ID=Msa1077970-mRNA-1;Parent=Msa1077970;Name=Msa1077970-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|0.33|0.25|4|0|245
chr7_2 exon 76810441 76810563 76810441 ID=Msa1077970-mRNA-1:exon:18709;Parent=Msa1077970-mRNA-1
chr7_2 exon 76810143 76810280 76810143 ID=Msa1077970-mRNA-1:exon:18708;Parent=Msa1077970-mRNA-1
chr7_2 exon 76809992 76810133 76809992 ID=Msa1077970-mRNA-1:exon:18707;Parent=Msa1077970-mRNA-1
chr7_2 exon 76809277 76809611 76809277 ID=Msa1077970-mRNA-1:exon:18706;Parent=Msa1077970-mRNA-1
chr7_2 CDS 76810441 76810563 76810441 ID=Msa1077970-mRNA-1:cds;Parent=Msa1077970-mRNA-1
chr7_2 CDS 76810143 76810280 76810143 ID=Msa1077970-mRNA-1:cds;Parent=Msa1077970-mRNA-1
chr7_2 CDS 76809992 76810133 76809992 ID=Msa1077970-mRNA-1:cds;Parent=Msa1077970-mRNA-1
chr7_2 CDS 76809277 76809611 76809277 ID=Msa1077970-mRNA-1:cds;Parent=Msa1077970-mRNA-1
Gene Sequence

>Msa1077970

CTACATTTTTTCAACGCCGATCTAAGCAACCCTGACAGTTTCGCTGCAGCAATCGAAGGCTGTGTCGGGATATTCCACACCGCTTCACCAATTGACTTCGCCGTGAGTGAACCAGAAGAAATAACAGTGAAGAGGTTTATATACACTTCAAGTGGTTCTGCTGTTTCATTCAATGGAAAAGACAAAGATGTGTTGGATGAGAGTGATTGGAGTGATGTTGATTTGCTTAGAAGTGTTAAGCCATTTGGTTGGAATTATGCTACTTTGGCTGAGAAAGCTGTTCTTGAATTTGGTGAACAAAATGGGATTGATGTTGTTACTTTGATTCTTCCTTTTATCGTTGGTCGTTTTGTTTGTCCTAAGCTTCCTGATTCTATTGAGAAAGCCCTTGTTTTGGTATTAGGCAAAAAAGAACAAATTGGTGTGACACGTTTCCACATGGTACATGTTGATGATGTGGCTAGAGCACATATATATCTACTTGAGAATTCTGTTCCAGGAGGTAGATACAATTGCTCACCATTCATTGTACCTATTGAAGAGATGTCTCAACTTCTTTCAGCCAAATATCCAGAATATCAAATACTAACAGTAGATGAGTTGAAGGAAATTAAAGGTGCAAGGTTACCAGATTTAAACACGAAGAAACTCGTGGATGCTGGTTTCGAATTTAAGTACACTATCGAAGATATGTTCGACGATGCAATTCAATGTTGCAAGGAGAAAGGCTATCTCTAA

Protein sequence

>Msa1077970

LHFFNADLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEITVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYATLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVDAGFEFKYTIEDMFDDAIQCCKEKGYL*