Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077920 | KEH42792.1 | 92.765 | 857 | 39 | 5 | 1 | 836 | 1 | 855 | 0.0 | 1590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077920 | sp|Q940Y9|POLL2_ARATH | 64.706 | 731 | 227 | 8 | 129 | 836 | 95 | 817 | 0.0 | 948 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077920 | A0A072VLT4 | 92.765 | 857 | 39 | 5 | 1 | 836 | 1 | 855 | 0.0 | 1590 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000180 | Msa0077920 | 0.810765 | 9.797943e-51 | -8.615850e-47 |
| Msa0025060 | Msa0077920 | 0.818069 | 2.375422e-52 | -8.615850e-47 |
| Msa0025090 | Msa0077920 | 0.826250 | 3.007805e-54 | -8.615850e-47 |
| Msa0026120 | Msa0077920 | 0.827612 | 1.420706e-54 | -8.615850e-47 |
| Msa0030320 | Msa0077920 | 0.926208 | 6.424310e-91 | -8.615850e-47 |
| Msa0038910 | Msa0077920 | 0.810960 | 8.890410e-51 | -8.615850e-47 |
| Msa0046670 | Msa0077920 | 0.800497 | 1.401874e-48 | -8.615850e-47 |
| Msa0060740 | Msa0077920 | 0.845864 | 3.112661e-59 | -8.615850e-47 |
| Msa0077920 | Msa0086380 | 0.820058 | 8.379717e-53 | -8.615850e-47 |
| Msa0077920 | Msa0106810 | 0.807762 | 4.315164e-50 | -8.615850e-47 |
| Msa0077920 | Msa0112800 | 0.830034 | 3.685466e-55 | -8.615850e-47 |
| Msa0077920 | Msa0125810 | 0.967124 | 7.564406e-127 | -8.615850e-47 |
| Msa0077920 | Msa0133190 | 0.821612 | 3.681310e-53 | -8.615850e-47 |
| Msa0077920 | Msa0133250 | 0.812876 | 3.400418e-51 | -8.615850e-47 |
| Msa0077920 | Msa0136520 | 0.811184 | 7.947839e-51 | -8.615850e-47 |
| Msa0077920 | Msa0151810 | 0.852054 | 5.936309e-61 | -8.615850e-47 |
| Msa0077920 | Msa0153290 | 0.830778 | 2.424383e-55 | -8.615850e-47 |
| Msa0077920 | Msa0153890 | 0.811253 | 7.679989e-51 | -8.615850e-47 |
| Msa0077920 | Msa0153920 | 0.804094 | 2.547836e-49 | -8.615850e-47 |
| Msa0077920 | Msa0166580 | 0.836348 | 9.866784e-57 | -8.615850e-47 |
| Msa0077920 | Msa0170450 | 0.937429 | 3.515875e-98 | -8.615850e-47 |
| Msa0077920 | Msa0208400 | 0.803633 | 3.175974e-49 | -8.615850e-47 |
| Msa0077920 | Msa0208560 | 0.801315 | 9.543866e-49 | -8.615850e-47 |
| Msa0077920 | Msa0241580 | 0.813239 | 2.830394e-51 | -8.615850e-47 |
| Msa0077920 | Msa0258960 | 0.800221 | 1.595217e-48 | -8.615850e-47 |
| Msa0077920 | Msa0279490 | 0.816968 | 4.205346e-52 | -8.615850e-47 |
| Msa0077920 | Msa0319060 | 0.806829 | 6.803180e-50 | -8.615850e-47 |
| Msa0077920 | Msa0319090 | 0.813944 | 1.980530e-51 | -8.615850e-47 |
| Msa0077920 | Msa0357090 | 0.839630 | 1.412684e-57 | -8.615850e-47 |
| Msa0077920 | Msa0384220 | -0.801514 | 8.685256e-49 | -8.615850e-47 |
| Msa0077920 | Msa0387180 | -0.820146 | 8.002910e-53 | -8.615850e-47 |
| Msa0077920 | Msa0437850 | 0.821724 | 3.467858e-53 | -8.615850e-47 |
| Msa0077920 | Msa0452010 | 0.800818 | 1.205402e-48 | -8.615850e-47 |
| Msa0077920 | Msa0452680 | 0.811110 | 8.246236e-51 | -8.615850e-47 |
| Msa0077920 | Msa0468050 | -0.806461 | 8.136405e-50 | -8.615850e-47 |
| Msa0077920 | Msa0482840 | 0.815755 | 7.856390e-52 | -8.615850e-47 |
| Msa0077920 | Msa0522830 | 0.803298 | 3.726696e-49 | -8.615850e-47 |
| Msa0077920 | Msa0563230 | 0.808681 | 2.748409e-50 | -8.615850e-47 |
| Msa0077920 | Msa0597300 | 0.813016 | 3.168722e-51 | -8.615850e-47 |
| Msa0077920 | Msa0604130 | 0.840642 | 7.691438e-58 | -8.615850e-47 |
| Msa0077920 | Msa0607620 | 0.803390 | 3.566815e-49 | -8.615850e-47 |
| Msa0077920 | Msa0619460 | 0.818196 | 2.223590e-52 | -8.615850e-47 |
| Msa0077920 | Msa0619520 | 0.807832 | 4.168748e-50 | -8.615850e-47 |
| Msa0077920 | Msa0636750 | 0.844699 | 6.432406e-59 | -8.615850e-47 |
| Msa0077920 | Msa0636760 | 0.849617 | 2.881856e-60 | -8.615850e-47 |
| Msa0077920 | Msa0639880 | 0.820542 | 6.490649e-53 | -8.615850e-47 |
| Msa0077920 | Msa0645460 | 0.825457 | 4.639310e-54 | -8.615850e-47 |
| Msa0077920 | Msa0659590 | 0.821593 | 3.718283e-53 | -8.615850e-47 |
| Msa0077920 | Msa0684910 | 0.837863 | 4.043425e-57 | -8.615850e-47 |
| Msa0077920 | Msa0684920 | 0.839398 | 1.623023e-57 | -8.615850e-47 |
| Msa0077920 | Msa0712100 | 0.805079 | 1.587275e-49 | -8.615850e-47 |
| Msa0077920 | Msa0752540 | 0.821703 | 3.505776e-53 | -8.615850e-47 |
| Msa0077920 | Msa0882340 | 0.816220 | 6.185905e-52 | -8.615850e-47 |
| Msa0077920 | Msa1018720 | 0.821523 | 3.859688e-53 | -8.615850e-47 |
| Msa0077920 | Msa1024120 | 0.802681 | 4.998826e-49 | -8.615850e-47 |
| Msa0077920 | Msa1038890 | 0.800507 | 1.395262e-48 | -8.615850e-47 |
| Msa0077920 | Msa1039650 | -0.809327 | 1.998539e-50 | -8.615850e-47 |
| Msa0077920 | Msa1050320 | 0.800433 | 1.444281e-48 | -8.615850e-47 |
| Msa0077920 | Msa1081650 | 0.805426 | 1.342904e-49 | -8.615850e-47 |
| Msa0077920 | Msa1128780 | 0.810661 | 1.031725e-50 | -8.615850e-47 |
| Msa0077920 | Msa1147190 | 0.821029 | 5.016700e-53 | -8.615850e-47 |
| Msa0077920 | Msa1151970 | 0.800653 | 1.303160e-48 | -8.615850e-47 |
| Msa0077920 | Msa1177360 | 0.810428 | 1.158516e-50 | -8.615850e-47 |
| Msa0077920 | Msa1192790 | 0.838971 | 2.094252e-57 | -8.615850e-47 |
| Msa0077920 | Msa1213460 | 0.808765 | 2.636616e-50 | -8.615850e-47 |
| Msa0077920 | Msa1258600 | -0.810210 | 1.290948e-50 | -8.615850e-47 |
| Msa0077920 | Msa1260510 | 0.810529 | 1.101899e-50 | -8.615850e-47 |
| Msa0077920 | Msa1300360 | 0.808615 | 2.838390e-50 | -8.615850e-47 |
| Msa0077920 | Msa1304980 | -0.800123 | 1.670528e-48 | -8.615850e-47 |
| Msa0077920 | Msa1327400 | 0.839612 | 1.427550e-57 | -8.615850e-47 |
| Msa0077920 | Msa1327420 | 0.839438 | 1.584075e-57 | -8.615850e-47 |
| Msa0077920 | Msa1331730 | 0.811068 | 8.423879e-51 | -8.615850e-47 |
| Msa0077920 | Msa1352550 | 0.828898 | 6.960302e-55 | -8.615850e-47 |
| Msa0077920 | Msa1391600 | 0.819694 | 1.015289e-52 | -8.615850e-47 |
| Msa0077920 | Msa1395700 | 0.810571 | 1.078675e-50 | -8.615850e-47 |
| Msa0077920 | Msa1397550 | 0.811727 | 6.058156e-51 | -8.615850e-47 |
| Msa0077920 | Msa1400940 | -0.813340 | 2.690146e-51 | -8.615850e-47 |
| Msa0077920 | Msa1412830 | 0.816830 | 4.518125e-52 | -8.615850e-47 |
| Msa0077920 | Msa1437650 | 0.801653 | 8.135824e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077920 | MtrunA17_Chr1g0188021 | 92.765 | 857 | 39 | 5 | 1 | 836 | 1 | 855 | 0.0 | 1590 |
| Msa0077920 | MtrunA17_Chr7g0276651 | 25.074 | 674 | 415 | 17 | 200 | 829 | 197 | 824 | 4.38e-52 | 195 |
| Msa0077920 | MtrunA17_Chr2g0277131 | 23.242 | 697 | 435 | 17 | 182 | 829 | 237 | 882 | 2.03e-47 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077920 | AT5G43745.1 | 64.706 | 731 | 227 | 8 | 129 | 836 | 95 | 817 | 0.0 | 948 |
| Msa0077920 | AT5G02940.1 | 61.008 | 754 | 250 | 10 | 106 | 836 | 81 | 813 | 0.0 | 895 |
| Msa0077920 | AT5G02940.2 | 59.331 | 777 | 249 | 11 | 106 | 836 | 81 | 836 | 0.0 | 883 |
| Msa0077920 | AT5G49960.1 | 23.946 | 664 | 408 | 16 | 210 | 826 | 208 | 821 | 1.06e-46 | 180 |
| Msa0077920 | AT5G49960.3 | 24.009 | 454 | 293 | 9 | 210 | 657 | 208 | 615 | 9.28e-36 | 144 |
| Msa0077920 | AT5G49960.2 | 24.009 | 454 | 293 | 9 | 210 | 657 | 208 | 615 | 1.50e-35 | 144 |
Find 185 sgRNAs with CRISPR-Local
Find 509 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATTCAATTACCAAATTT+TGG | 0.067343 | 1_2:+54985950 | None:intergenic |
| ATTCAAAATGGTTTCCTTTA+AGG | 0.073901 | 1_2:+54988156 | None:intergenic |
| TTTCTGAGAGAGCATATTTA+AGG | 0.151867 | 1_2:-54986232 | Msa0077920:CDS |
| GTACCATGACTGAACAATTT+AGG | 0.174550 | 1_2:-54991556 | Msa0077920:CDS |
| AGAAATTGTCGATTCAAAAT+TGG | 0.174597 | 1_2:-54987508 | Msa0077920:CDS |
| CATTAAATGACAGGATTATT+AGG | 0.177184 | 1_2:-54988341 | Msa0077920:CDS |
| CTAATAATCCTGTCATTTAA+TGG | 0.182682 | 1_2:+54988342 | None:intergenic |
| CCAAAATTTGGTAATTGAAT+TGG | 0.199621 | 1_2:-54985950 | Msa0077920:three_prime_UTR |
| TCTGACAAAGATTGGCTTCT+TGG | 0.213550 | 1_2:-54988082 | Msa0077920:CDS |
| AATTATGCTGAGAATAATTT+AGG | 0.217375 | 1_2:-54985986 | Msa0077920:three_prime_UTR |
| ACACGTATTGAGCGTGTTAT+TGG | 0.217615 | 1_2:-54991626 | Msa0077920:CDS |
| TTCCTCTGTCCAAATGAAAT+TGG | 0.236075 | 1_2:+54993281 | None:intergenic |
| AGAGCATTGAACAAATAATT+TGG | 0.238735 | 1_2:+54989766 | None:intergenic |
| TTGGCTTTGTTCTTGCAATA+TGG | 0.244797 | 1_2:-54991607 | Msa0077920:CDS |
| TCTCTCCTTCTTTCATATAA+AGG | 0.245635 | 1_2:+54986273 | None:intergenic |
| CCTTCAACCAATTCCAGATA+TGG | 0.255524 | 1_2:-54989982 | Msa0077920:CDS |
| CATGGACTACGGCACCTTAA+AGG | 0.272237 | 1_2:-54988170 | Msa0077920:CDS |
| CAAAATTTGGTAATTGAATT+GGG | 0.280283 | 1_2:-54985949 | Msa0077920:three_prime_UTR |
| TGCAGAATTTCATCATCATT+TGG | 0.285455 | 1_2:+54989159 | None:intergenic |
| TTCATTCAATTCACTATTCT+CGG | 0.286894 | 1_2:+54987203 | None:intergenic |
| GAAATTGTCGATTCAAAATT+GGG | 0.301885 | 1_2:-54987507 | Msa0077920:CDS |
| ATAGTGAATTGAATGAAGTT+TGG | 0.306785 | 1_2:-54987197 | Msa0077920:CDS |
| CTGTTGTATGTGGTCTTTAC+CGG | 0.310048 | 1_2:-54989203 | Msa0077920:CDS |
| TGAAGTCTGAATATTCAAAA+TGG | 0.312714 | 1_2:+54988144 | None:intergenic |
| TACCATGACTGAACAATTTA+GGG | 0.322572 | 1_2:-54991555 | Msa0077920:intron |
| CCTCGTTAGGTATTGTTCAT+TGG | 0.325696 | 1_2:-54989041 | Msa0077920:intron |
| TGGCTTTGTTCTTGCAATAT+GGG | 0.327052 | 1_2:-54991606 | Msa0077920:CDS |
| AGGGGTTCTGACTTTGGAAT+TGG | 0.327626 | 1_2:+54986077 | None:intergenic |
| CTTGCATATCTGACAAAGAT+TGG | 0.330744 | 1_2:-54988090 | Msa0077920:CDS |
| GATATGCAAGCAATTGAAAA+AGG | 0.332048 | 1_2:+54988103 | None:intergenic |
| CTTCAACAAGTCACATGTTT+GGG | 0.332614 | 1_2:+54989832 | None:intergenic |
| AGTAAAAGAATGCATTCTTT+TGG | 0.333418 | 1_2:+54988733 | None:intergenic |
| GCAGAATTTCATCATCATTT+GGG | 0.346170 | 1_2:+54989160 | None:intergenic |
| ATTAAATGACAGGATTATTA+GGG | 0.346750 | 1_2:-54988340 | Msa0077920:CDS |
| TGCAGCTTGCCTGATCTTGA+AGG | 0.354653 | 1_2:-54989353 | Msa0077920:CDS |
| ATGTTCACTATGTTCTGAAT+TGG | 0.356478 | 1_2:+54993323 | None:intergenic |
| CCACAAGTTATAACCACAAA+TGG | 0.365342 | 1_2:-54988996 | Msa0077920:CDS |
| GGGGTTCTGACTTTGGAATT+GGG | 0.367709 | 1_2:+54986078 | None:intergenic |
| TCTCGGTCCTGGAAGTGTTT+TGG | 0.368444 | 1_2:-54988662 | Msa0077920:intron |
| TTAAATGTAAAATGTGTAAA+TGG | 0.377387 | 1_2:-54985822 | Msa0077920:three_prime_UTR |
| ACTTCAACAAGTCACATGTT+TGG | 0.378442 | 1_2:+54989831 | None:intergenic |
| ATGTGAGCACCAATTTCATT+TGG | 0.382678 | 1_2:-54993290 | Msa0077920:CDS |
| AGAATGTTCGAGTTTCTCAT+AGG | 0.392413 | 1_2:-54988290 | Msa0077920:CDS |
| CTTTAAGGTGCCGTAGTCCA+TGG | 0.393693 | 1_2:+54988171 | None:intergenic |
| AGAGAGAGGGGTTCTGACTT+TGG | 0.394255 | 1_2:+54986071 | None:intergenic |
| CTGACACATACAAAGTTTGT+TGG | 0.400547 | 1_2:-54992977 | Msa0077920:CDS |
| AAACATACCAAAACACTTCC+AGG | 0.411264 | 1_2:+54988655 | None:intergenic |
| ATTGATATATGTAGGTTTCA+AGG | 0.414000 | 1_2:-54989856 | Msa0077920:intron |
| ATAATTATACTGCCAGCAAA+AGG | 0.414426 | 1_2:-54990787 | Msa0077920:CDS |
| TATGTGGTCTTTACCGGAAT+GGG | 0.416645 | 1_2:-54989197 | Msa0077920:CDS |
| GTGGGGACAGAACCCATATC+TGG | 0.420607 | 1_2:+54989969 | None:intergenic |
| ACCGATCATATCATTATTTG+TGG | 0.426209 | 1_2:-54991411 | Msa0077920:CDS |
| CCATTTGTGGTTATAACTTG+TGG | 0.429550 | 1_2:+54988996 | None:intergenic |
| AGTGTCTCACAATTATTATA+AGG | 0.430018 | 1_2:+54994236 | None:intergenic |
| TTCCAAGAAAACAGATTGAT+AGG | 0.432088 | 1_2:-54991185 | Msa0077920:CDS |
| TTGGAAGATCAGACATAAGA+AGG | 0.434726 | 1_2:+54991202 | None:intergenic |
| TTGGATGCAACATCTTCTAC+TGG | 0.434987 | 1_2:+54989785 | None:intergenic |
| TTGAATCATTTCTACAACAT+CGG | 0.436367 | 1_2:+54988699 | None:intergenic |
| GTTCTTCTTCACATAACCTA+TGG | 0.436383 | 1_2:+54986199 | None:intergenic |
| ACAGAACCCATATCTGGAAT+TGG | 0.442566 | 1_2:+54989975 | None:intergenic |
| AAGTGGCTTAGGTGTATTCA+AGG | 0.445370 | 1_2:+54992865 | None:intergenic |
| ACGTCTAATTTAAGTGGCTT+AGG | 0.446496 | 1_2:+54992854 | None:intergenic |
| TGAATCATTTCTACAACATC+GGG | 0.447283 | 1_2:+54988700 | None:intergenic |
| ACACCAACAACAAGAATTCC+AGG | 0.447705 | 1_2:-54994091 | Msa0077920:intron |
| CTTCAACCAATTCCAGATAT+GGG | 0.456773 | 1_2:-54989981 | Msa0077920:CDS |
| CGAATACCACGCCTGTGTAA+TGG | 0.458509 | 1_2:+54993573 | None:intergenic |
| ACATGCACTCCTGTCTTCCA+TGG | 0.460579 | 1_2:-54994148 | Msa0077920:CDS |
| GGAAAATAATAGTAGCTCTC+AGG | 0.460845 | 1_2:-54993262 | Msa0077920:intron |
| TATTCAGACTTCATTGAAGA+AGG | 0.463327 | 1_2:-54988134 | Msa0077920:CDS |
| TTTAAGGTGCCGTAGTCCAT+GGG | 0.463795 | 1_2:+54988172 | None:intergenic |
| TTGTGCCCTGTCATATCAGC+TGG | 0.468222 | 1_2:-54993614 | Msa0077920:CDS |
| AGAGTAATATGCAAAGGCTC+AGG | 0.468992 | 1_2:-54991461 | Msa0077920:CDS |
| GACTTGTTGAAGTCAATCTC+GGG | 0.469582 | 1_2:-54989821 | Msa0077920:CDS |
| CCATATCTGGAATTGGTTGA+AGG | 0.469691 | 1_2:+54989982 | None:intergenic |
| TATGTCATTCCTTCAAGATC+AGG | 0.471383 | 1_2:+54989344 | None:intergenic |
| TTATTTCAGGCTGTTGTATG+TGG | 0.479952 | 1_2:-54989213 | Msa0077920:intron |
| TTCTGTCCCCACAATAGTTG+AGG | 0.480508 | 1_2:-54989958 | Msa0077920:intron |
| GTACCTGGAATTCTTGTTGT+TGG | 0.483183 | 1_2:+54994088 | None:intergenic |
| TCAGAAAGCTCGGAAAATGA+TGG | 0.485822 | 1_2:+54986248 | None:intergenic |
| ATTAGCCTTTATATGAAAGA+AGG | 0.487807 | 1_2:-54986278 | Msa0077920:CDS |
| GGCTTTGTTCTTGCAATATG+GGG | 0.488366 | 1_2:-54991605 | Msa0077920:CDS |
| AATGACCTTGAGCAGTTACA+AGG | 0.490244 | 1_2:+54987325 | None:intergenic |
| TATGAGAACTATCTCGGTCC+TGG | 0.491562 | 1_2:-54988673 | Msa0077920:CDS |
| CAGGAACAATAAACAATCAC+TGG | 0.493123 | 1_2:-54991823 | Msa0077920:CDS |
| GACTCTTGACGGAACAAGCT+TGG | 0.493689 | 1_2:-54992909 | Msa0077920:CDS |
| TTTAGCTGCTTTAATATGAA+AGG | 0.497921 | 1_2:+54991372 | None:intergenic |
| GTGGCTTATTAGTATTCTGA+AGG | 0.498207 | 1_2:+54989015 | None:intergenic |
| CAGAGACGCCATTAAATGAC+AGG | 0.499203 | 1_2:-54988350 | Msa0077920:CDS |
| GACAAAGATTGGCTTCTTGG+AGG | 0.500058 | 1_2:-54988079 | Msa0077920:CDS |
| CCTGTCATATCAGCTGGCTC+AGG | 0.500403 | 1_2:-54993608 | Msa0077920:CDS |
| TATTTCCTCCGCCGCAACAT+AGG | 0.501247 | 1_2:+54987353 | None:intergenic |
| ATTGATAGTCATATCTGAGC+TGG | 0.501789 | 1_2:-54986033 | Msa0077920:CDS |
| TCTGAATTGGAATTAAAAGC+TGG | 0.502397 | 1_2:+54993336 | None:intergenic |
| TATGTGCCTCAGACTCTTGA+CGG | 0.505688 | 1_2:-54992920 | Msa0077920:CDS |
| TAATTATACTGCCAGCAAAA+GGG | 0.507131 | 1_2:-54990786 | Msa0077920:CDS |
| TAACAAACCTCAACTATTGT+GGG | 0.508090 | 1_2:+54989951 | None:intergenic |
| AAGGACTTATAAAGATCTAC+AGG | 0.509152 | 1_2:-54989736 | Msa0077920:CDS |
| GTTTCTTGTTCTTCAAGCTA+AGG | 0.510347 | 1_2:-54992591 | Msa0077920:intron |
| CCTGAGCCAGCTGATATGAC+AGG | 0.511177 | 1_2:+54993608 | None:intergenic |
| TGACTTGTTGAAGTCAATCT+CGG | 0.511323 | 1_2:-54989822 | Msa0077920:CDS |
| CATCTAATATCATGAAAAGA+AGG | 0.511608 | 1_2:+54992824 | None:intergenic |
| CCTTGGAATCCATGGAAGAC+AGG | 0.513471 | 1_2:+54994139 | None:intergenic |
| AATTATTTGTTCAATGCTCT+CGG | 0.514496 | 1_2:-54989763 | Msa0077920:CDS |
| ATAACCACAAATGGGAAAGA+AGG | 0.514985 | 1_2:-54988987 | Msa0077920:CDS |
| GTAACGCGTCCTAACAGATC+TGG | 0.516914 | 1_2:-54988882 | Msa0077920:CDS |
| AAGGAGACGTCTAATTTAAG+TGG | 0.517014 | 1_2:+54992848 | None:intergenic |
| AGTGACCTATGTTGCGGCGG+AGG | 0.517374 | 1_2:-54987358 | Msa0077920:CDS |
| CACAAGTTATAACCACAAAT+GGG | 0.517797 | 1_2:-54988995 | Msa0077920:CDS |
| GCATGTGCTACAGGGTCGAC+AGG | 0.519355 | 1_2:-54993044 | Msa0077920:intron |
| GTTCAATGCTCTCGGCAGAA+AGG | 0.520032 | 1_2:-54989755 | Msa0077920:CDS |
| ATCTTGAAGGAATGACATAT+AGG | 0.524524 | 1_2:-54989340 | Msa0077920:CDS |
| GCACATATCGAACTATTGCT+TGG | 0.525302 | 1_2:+54992936 | None:intergenic |
| GTCAGTCAATTCAAGAGAGA+GGG | 0.525834 | 1_2:+54986058 | None:intergenic |
| TCTTACTTTACTCAATTCGA+TGG | 0.529133 | 1_2:+54988917 | None:intergenic |
| CAGCATAATTACAAAATGAC+CGG | 0.533687 | 1_2:+54985999 | None:intergenic |
| AATGGGAAAGAAGGAAAAGA+TGG | 0.536238 | 1_2:-54988978 | Msa0077920:CDS |
| AATTATACTGCCAGCAAAAG+GGG | 0.536630 | 1_2:-54990785 | Msa0077920:CDS |
| CAAGAGTATGAGAACTATCT+CGG | 0.537222 | 1_2:-54988679 | Msa0077920:CDS |
| TACCCTAAATTGTTCAGTCA+TGG | 0.537267 | 1_2:+54991553 | None:intergenic |
| CACGAGTTTGCTGTTCGCCT+AGG | 0.538803 | 1_2:-54991342 | Msa0077920:CDS |
| AAAATTTGGTAATTGAATTG+GGG | 0.539062 | 1_2:-54985948 | Msa0077920:three_prime_UTR |
| TTGAGCCTTGTAACTGCTCA+AGG | 0.539272 | 1_2:-54987330 | Msa0077920:intron |
| GTAACAAACCTCAACTATTG+TGG | 0.540000 | 1_2:+54989950 | None:intergenic |
| ATATGCTCTCTCAGAAAGCT+CGG | 0.542579 | 1_2:+54986238 | None:intergenic |
| ATCACCATTTAGGCAGCAGA+CGG | 0.544517 | 1_2:-54988766 | Msa0077920:intron |
| CCGATCATATCATTATTTGT+GGG | 0.545928 | 1_2:-54991410 | Msa0077920:CDS |
| GTGGAAGTGAGTGAGATTCA+TGG | 0.547458 | 1_2:+54994169 | None:intergenic |
| ATTATTAGGGAAAACATCGT+TGG | 0.550733 | 1_2:-54988327 | Msa0077920:CDS |
| CCTGTCTTCCATGGATTCCA+AGG | 0.554780 | 1_2:-54994139 | Msa0077920:CDS |
| TACTGCCAGCAAAAGGGGAT+CGG | 0.554950 | 1_2:-54990780 | Msa0077920:intron |
| ACCTTGGAACCAGATCTGTT+AGG | 0.555505 | 1_2:+54988873 | None:intergenic |
| ATGTAAACCCTGTAGGGAGA+TGG | 0.559911 | 1_2:-54993377 | Msa0077920:intron |
| CATATCTGGAATTGGTTGAA+GGG | 0.560971 | 1_2:+54989983 | None:intergenic |
| GTATGTGGTCTTTACCGGAA+TGG | 0.565150 | 1_2:-54989198 | Msa0077920:CDS |
| CACGAAATATTTGACTGACT+CGG | 0.565620 | 1_2:-54994261 | Msa0077920:five_prime_UTR |
| TATGTGTGCCTTGGAATCCA+TGG | 0.565777 | 1_2:+54994131 | None:intergenic |
| TTAAGGAGAGAAGTAGCCAT+AGG | 0.566286 | 1_2:-54986215 | Msa0077920:CDS |
| ATTGGAAACCCCATGGACTA+CGG | 0.567157 | 1_2:-54988181 | Msa0077920:CDS |
| GAATGTTCGAGTTTCTCATA+GGG | 0.567985 | 1_2:-54988289 | Msa0077920:intron |
| CACCAATTTCATTTGGACAG+AGG | 0.569663 | 1_2:-54993283 | Msa0077920:CDS |
| GGGAGCACAAATGCAAGTCA+TGG | 0.570238 | 1_2:-54991436 | Msa0077920:CDS |
| TAGGCAGCAGACGGGAATGT+AGG | 0.574180 | 1_2:-54988757 | Msa0077920:CDS |
| GATGAGCAGTATGTGTGCCT+TGG | 0.581395 | 1_2:+54994122 | None:intergenic |
| TCACCATTTAGGCAGCAGAC+GGG | 0.585510 | 1_2:-54988765 | Msa0077920:intron |
| TGAGCTGGAAGGTGAACAGC+CGG | 0.586773 | 1_2:-54986018 | Msa0077920:CDS |
| CGCAACAGAGTAATATGCAA+AGG | 0.588880 | 1_2:-54991467 | Msa0077920:intron |
| GAATTTCATCATCATTTGGG+TGG | 0.590474 | 1_2:+54989163 | None:intergenic |
| AATATCATGAAAAGAAGGCA+AGG | 0.592571 | 1_2:+54992829 | None:intergenic |
| TGCAACTCACCTTCAGTGTG+TGG | 0.593529 | 1_2:+54993549 | None:intergenic |
| TCCTAACAGATCTGGTTCCA+AGG | 0.594226 | 1_2:-54988874 | Msa0077920:intron |
| GAGTAATATGCAAAGGCTCA+GGG | 0.597688 | 1_2:-54991460 | Msa0077920:CDS |
| CCCACAAATAATGATATGAT+CGG | 0.599046 | 1_2:+54991410 | None:intergenic |
| AGTCAGTCAATTCAAGAGAG+AGG | 0.599157 | 1_2:+54986057 | None:intergenic |
| ACCTAGCTGAAGCAGTGCCT+AGG | 0.600093 | 1_2:+54991325 | None:intergenic |
| AGCGTCGATACCTCTTGCTA+AGG | 0.600603 | 1_2:+54991121 | None:intergenic |
| ATGGAAGACAGGAGTGCATG+TGG | 0.603280 | 1_2:+54994150 | None:intergenic |
| GCCGCAACATAGGTCACTGA+TGG | 0.603508 | 1_2:+54987363 | None:intergenic |
| CCACGCCTGTGTAATGGAGA+AGG | 0.603866 | 1_2:+54993579 | None:intergenic |
| GGGTGATGAAATATATGTGA+AGG | 0.604673 | 1_2:-54987154 | Msa0077920:intron |
| GCCATCAGTGACCTATGTTG+CGG | 0.607641 | 1_2:-54987364 | Msa0077920:CDS |
| TGGCTTATTAGTATTCTGAA+GGG | 0.612456 | 1_2:+54989016 | None:intergenic |
| TCTCACTCTGCTCCTAGTAG+TGG | 0.618226 | 1_2:+54994201 | None:intergenic |
| CTTGTTCCGTCAAGAGTCTG+AGG | 0.618450 | 1_2:+54992914 | None:intergenic |
| GAAAGACATACTAGATGCAG+AGG | 0.618766 | 1_2:-54987175 | Msa0077920:CDS |
| ATATTGATCTCCTTAGCAAG+AGG | 0.619450 | 1_2:-54991131 | Msa0077920:intron |
| ATCAGTGACCTATGTTGCGG+CGG | 0.620787 | 1_2:-54987361 | Msa0077920:CDS |
| AAATTGTCGATTCAAAATTG+GGG | 0.621368 | 1_2:-54987506 | Msa0077920:CDS |
| AAACCCTGTAGGGAGATGGC+AGG | 0.622638 | 1_2:-54993373 | Msa0077920:intron |
| CCTTCTCCATTACACAGGCG+TGG | 0.637605 | 1_2:-54993579 | Msa0077920:CDS |
| TCAGTCAATTCAAGAGAGAG+GGG | 0.638151 | 1_2:+54986059 | None:intergenic |
| AAGTGAGTGAGATTCATGGC+TGG | 0.639373 | 1_2:+54994173 | None:intergenic |
| GGTATTCGACCACACACTGA+AGG | 0.641674 | 1_2:-54993558 | Msa0077920:intron |
| CTTCACCTTCTCCATTACAC+AGG | 0.646584 | 1_2:-54993584 | Msa0077920:CDS |
| CTGAGCCAGCTGATATGACA+GGG | 0.647653 | 1_2:+54993609 | None:intergenic |
| ATAGTCATATCTGAGCTGGA+AGG | 0.647720 | 1_2:-54986029 | Msa0077920:CDS |
| ATAACACGCTCAATACGTGT+TGG | 0.648660 | 1_2:+54991629 | None:intergenic |
| GCCTAGGCACTGCTTCAGCT+AGG | 0.650589 | 1_2:-54991326 | Msa0077920:intron |
| ACTATAGATTGGAAACCCCA+TGG | 0.653465 | 1_2:-54988188 | Msa0077920:intron |
| AACAAACCTCAACTATTGTG+GGG | 0.656942 | 1_2:+54989952 | None:intergenic |
| ATATTAGATGGAGCTTAGCG+CGG | 0.663174 | 1_2:-54992811 | Msa0077920:CDS |
| AATATGCAAAGGCTCAGGGA+GGG | 0.673017 | 1_2:-54991456 | Msa0077920:CDS |
| TAATATGCAAAGGCTCAGGG+AGG | 0.678347 | 1_2:-54991457 | Msa0077920:CDS |
| TTAAGGTGCCGTAGTCCATG+GGG | 0.678704 | 1_2:+54988173 | None:intergenic |
| ACTTGTTGAAGTCAATCTCG+GGG | 0.695230 | 1_2:-54989820 | Msa0077920:CDS |
| AAAGACATACTAGATGCAGA+GGG | 0.713150 | 1_2:-54987174 | Msa0077920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGATATAAATAATTTCT+TGG | + | chr1_2:54987975-54987994 | None:intergenic | 10.0% |
| !! | CATATGATTAATTTAATTAA+TGG | + | chr1_2:54989064-54989083 | None:intergenic | 10.0% |
| !!! | ATAAATTATTCATTCAATTT+TGG | - | chr1_2:54990466-54990485 | Msa0077920:intron | 10.0% |
| !! | CATTAATGTAAAATTATAAA+TGG | + | chr1_2:54990769-54990788 | None:intergenic | 10.0% |
| !!! | ATATTTTTATTATTGTTTTG+CGG | + | chr1_2:54991475-54991494 | None:intergenic | 10.0% |
| !!! | TAATATTTTTTTGTTATGAT+AGG | - | chr1_2:54992100-54992119 | Msa0077920:intron | 10.0% |
| !!! | TTTATTTTTTCTTATTATAC+AGG | - | chr1_2:54993716-54993735 | Msa0077920:intron | 10.0% |
| !!! | GTTTTATTTTGAATAATAAT+TGG | - | chr1_2:54993873-54993892 | Msa0077920:intron | 10.0% |
| !!! | TTTTTTTTTTCAGAATAAAT+TGG | - | chr1_2:54994161-54994180 | Msa0077920:CDS | 10.0% |
| !! | TCATTATCTGTTAAAAAATT+TGG | + | chr1_2:54986175-54986194 | None:intergenic | 15.0% |
| !!! | TTTTGAACATAAAACATTAA+AGG | + | chr1_2:54986880-54986899 | None:intergenic | 15.0% |
| !!! | TGTTCAAAATTCAAATATTT+TGG | - | chr1_2:54986891-54986910 | Msa0077920:intron | 15.0% |
| !! | ATTATTAAAATTGAATCTAG+TGG | - | chr1_2:54987999-54988018 | Msa0077920:intron | 15.0% |
| !!! | TTATATATGTTTGTTAATCT+GGG | - | chr1_2:54988157-54988176 | Msa0077920:CDS | 15.0% |
| !!! | TATATTTTTTTACATTGCTT+AGG | - | chr1_2:54988972-54988991 | Msa0077920:CDS | 15.0% |
| !!! | AAATGATTTTGTTAAACTAA+GGG | + | chr1_2:54989182-54989201 | None:intergenic | 15.0% |
| !! | CAATTAAGAAAATTTCAAAT+AGG | + | chr1_2:54990147-54990166 | None:intergenic | 15.0% |
| !!! | TTTTCTTAATTGATATATGT+AGG | - | chr1_2:54990155-54990174 | Msa0077920:intron | 15.0% |
| !! | GTAAAAAAAATATTAAACAC+CGG | + | chr1_2:54990617-54990636 | None:intergenic | 15.0% |
| !! | CTATATATTGATATTATTTC+AGG | - | chr1_2:54990793-54990812 | Msa0077920:CDS | 15.0% |
| !! | AAATTAGAAATATTTCCAAA+AGG | + | chr1_2:54992133-54992152 | None:intergenic | 15.0% |
| !! | TTCTAATTTCTCTAAATATA+TGG | - | chr1_2:54992144-54992163 | Msa0077920:intron | 15.0% |
| !! | AATCTCTTTGATAAATTATA+TGG | + | chr1_2:54993074-54993093 | None:intergenic | 15.0% |
| !! | CATTCCAAAAAATTTATATA+TGG | - | chr1_2:54993385-54993404 | Msa0077920:intron | 15.0% |
| !!! | CAAACCATATATAAATTTTT+TGG | + | chr1_2:54993392-54993411 | None:intergenic | 15.0% |
| !! | ATAAATCATGTTCAAATTTA+TGG | + | chr1_2:54993562-54993581 | None:intergenic | 15.0% |
| !! | TTAAATGTAAAATGTGTAAA+TGG | - | chr1_2:54994197-54994216 | Msa0077920:five_prime_UTR | 15.0% |
| !!! | AAGTTTATTGTTGTTTTCAA+TGG | - | chr1_2:54986234-54986253 | Msa0077920:CDS | 20.0% |
| !!! | AAAATGTACAAAAGTATTGA+TGG | - | chr1_2:54986806-54986825 | Msa0077920:intron | 20.0% |
| !! | AGAAAATTCCATTTACAATA+AGG | + | chr1_2:54987510-54987529 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTCCTTTTTGTCA+AGG | + | chr1_2:54987547-54987566 | None:intergenic | 20.0% |
| !!! | ATTTTTTCAGACAAATATCT+TGG | + | chr1_2:54987656-54987675 | None:intergenic | 20.0% |
| !! | AAATAATTTCTTGGAAACAT+GGG | + | chr1_2:54987966-54987985 | None:intergenic | 20.0% |
| !! | TAAATAATTTCTTGGAAACA+TGG | + | chr1_2:54987967-54987986 | None:intergenic | 20.0% |
| !!! | CTTATATATGTTTGTTAATC+TGG | - | chr1_2:54988156-54988175 | Msa0077920:CDS | 20.0% |
| !!! | TACTCATTTAAAAGTATGTT+CGG | - | chr1_2:54988262-54988281 | Msa0077920:intron | 20.0% |
| !!! | TTATTTTGGATTTCATAATC+TGG | - | chr1_2:54988286-54988305 | Msa0077920:intron | 20.0% |
| !! | AGAAATATATTGTTTAAGGA+AGG | + | chr1_2:54988509-54988528 | None:intergenic | 20.0% |
| !! | CTAGGTAAATATTTCATAAA+AGG | - | chr1_2:54988711-54988730 | Msa0077920:CDS | 20.0% |
| !!! | AATAGTATTTTTACAAAAGC+CGG | + | chr1_2:54988948-54988967 | None:intergenic | 20.0% |
| !!! | CAAATGATTTTGTTAAACTA+AGG | + | chr1_2:54989183-54989202 | None:intergenic | 20.0% |
| !! | ATTAAATTAAATCGTACTCT+TGG | + | chr1_2:54989614-54989633 | None:intergenic | 20.0% |
| !! | AGATCATTATTCCTAATTAT+TGG | - | chr1_2:54989647-54989666 | Msa0077920:intron | 20.0% |
| !! | GATCATTATTCCTAATTATT+GGG | - | chr1_2:54989648-54989667 | Msa0077920:intron | 20.0% |
| !! | TTTCATACCTAACAATATAA+AGG | + | chr1_2:54989986-54990005 | None:intergenic | 20.0% |
| !! | TAATAGAAAATCTAGGAAAT+AGG | + | chr1_2:54990374-54990393 | None:intergenic | 20.0% |
| !!! | ATTTCCTAGATTTTCTATTA+TGG | - | chr1_2:54990374-54990393 | Msa0077920:intron | 20.0% |
| !! | AATACCATAATAGAAAATCT+AGG | + | chr1_2:54990381-54990400 | None:intergenic | 20.0% |
| !!! | AAATCAATACAAGTTTTAAC+TGG | + | chr1_2:54990566-54990585 | None:intergenic | 20.0% |
| !! | TTTAGAAAATCCAAGATAAA+AGG | + | chr1_2:54990949-54990968 | None:intergenic | 20.0% |
| !! | TTGGAGATTATGTAATAATA+TGG | - | chr1_2:54991613-54991632 | Msa0077920:CDS | 20.0% |
| !! | ATTAAATGACAGGATTATTA+GGG | - | chr1_2:54991679-54991698 | Msa0077920:intron | 20.0% |
| !! | CAAAAAATTGTAACTGAAAA+TGG | - | chr1_2:54991973-54991992 | Msa0077920:intron | 20.0% |
| !! | ATGTAGTTGAAATTTGAAAA+GGG | + | chr1_2:54992207-54992226 | None:intergenic | 20.0% |
| !! | AATGTAGTTGAAATTTGAAA+AGG | + | chr1_2:54992208-54992227 | None:intergenic | 20.0% |
| !! | GAAAAATATGTGACATAATT+AGG | + | chr1_2:54992254-54992273 | None:intergenic | 20.0% |
| !! | TCTATCATAGTATTTACTAT+AGG | + | chr1_2:54992282-54992301 | None:intergenic | 20.0% |
| !!! | AAATAAGTCTTGACTATTTT+GGG | + | chr1_2:54993101-54993120 | None:intergenic | 20.0% |
| !! | AATTATGCTGAGAATAATTT+AGG | - | chr1_2:54994033-54994052 | Msa0077920:intron | 20.0% |
| !!! | AATTCAATTACCAAATTTTG+GGG | + | chr1_2:54994070-54994089 | None:intergenic | 20.0% |
| !!! | CAATTCAATTACCAAATTTT+GGG | + | chr1_2:54994071-54994090 | None:intergenic | 20.0% |
| !!! | CAAAATTTGGTAATTGAATT+GGG | - | chr1_2:54994070-54994089 | Msa0077920:intron | 20.0% |
| !!! | AAAATTTGGTAATTGAATTG+GGG | - | chr1_2:54994071-54994090 | Msa0077920:intron | 20.0% |
| ! | AGTGTCTCACAATTATTATA+AGG | + | chr1_2:54985786-54985805 | None:intergenic | 25.0% |
| ! | ATCATTTCCATAATTGAGTT+GGG | + | chr1_2:54986028-54986047 | None:intergenic | 25.0% |
| ! | TATCATTTCCATAATTGAGT+TGG | + | chr1_2:54986029-54986048 | None:intergenic | 25.0% |
| !! | AGTCATGGTTCAAATTTTAT+AGG | - | chr1_2:54986093-54986112 | Msa0077920:intron | 25.0% |
| !! | GGTTCAAATTTTATAGGAAA+TGG | - | chr1_2:54986099-54986118 | Msa0077920:intron | 25.0% |
| ! | TTAATTAATGTAAACCCTGT+AGG | - | chr1_2:54986635-54986654 | Msa0077920:intron | 25.0% |
| ! | TAATTAATGTAAACCCTGTA+GGG | - | chr1_2:54986636-54986655 | Msa0077920:intron | 25.0% |
| !!! | ATTCAAATATTTTGGAGCAA+TGG | - | chr1_2:54986899-54986918 | Msa0077920:intron | 25.0% |
| ! | CATCTAATATCATGAAAAGA+AGG | + | chr1_2:54987198-54987217 | None:intergenic | 25.0% |
| !! | CTTCTTTTCATGATATTAGA+TGG | - | chr1_2:54987196-54987215 | Msa0077920:CDS | 25.0% |
| ! | TAATCACTTCATTGCTTATT+TGG | - | chr1_2:54987281-54987300 | Msa0077920:intron | 25.0% |
| ! | ATTAGAACTTATCTATCTAC+TGG | - | chr1_2:54987304-54987323 | Msa0077920:intron | 25.0% |
| !!! | GTTAACCTATTCTTATTTTG+TGG | - | chr1_2:54987481-54987500 | Msa0077920:intron | 25.0% |
| ! | TTGATATCATATACAACTTG+TGG | - | chr1_2:54987871-54987890 | Msa0077920:intron | 25.0% |
| ! | GTCTATATAAAACAACATCT+TGG | + | chr1_2:54987939-54987958 | None:intergenic | 25.0% |
| ! | CAGAAAAGAAAATAAAGAAG+GGG | + | chr1_2:54988032-54988051 | None:intergenic | 25.0% |
| ! | GCAGAAAAGAAAATAAAGAA+GGG | + | chr1_2:54988033-54988052 | None:intergenic | 25.0% |
| ! | AGCAGAAAAGAAAATAAAGA+AGG | + | chr1_2:54988034-54988053 | None:intergenic | 25.0% |
| !!! | CTTTATTTTCTTTTCTGCTT+TGG | - | chr1_2:54988035-54988054 | Msa0077920:intron | 25.0% |
| ! | GTTCCTGGATAATTTAATAA+TGG | + | chr1_2:54988183-54988202 | None:intergenic | 25.0% |
| !! | AAAGTATGTTCGGTTTATTT+TGG | - | chr1_2:54988272-54988291 | Msa0077920:intron | 25.0% |
| ! | GTGTTTATAAGCAATTTGAA+AGG | + | chr1_2:54988326-54988345 | None:intergenic | 25.0% |
| ! | GCACAGAAATATATTGTTTA+AGG | + | chr1_2:54988513-54988532 | None:intergenic | 25.0% |
| !! | TTTAGCTGCTTTAATATGAA+AGG | + | chr1_2:54988650-54988669 | None:intergenic | 25.0% |
| ! | AAGCAGAAATTTCAATTATG+AGG | + | chr1_2:54989149-54989168 | None:intergenic | 25.0% |
| ! | TGATCTACTTAAATTGCTAA+TGG | - | chr1_2:54989269-54989288 | Msa0077920:intron | 25.0% |
| ! | ACTTAAATTGCTAATGGTAT+AGG | - | chr1_2:54989275-54989294 | Msa0077920:intron | 25.0% |
| !! | TTTATTATTGAAAGTGTGTG+AGG | - | chr1_2:54989346-54989365 | Msa0077920:CDS | 25.0% |
| !! | TTATTATTGAAAGTGTGTGA+GGG | - | chr1_2:54989347-54989366 | Msa0077920:CDS | 25.0% |
| !! | ATAGCAATTTTCTCTAACAT+CGG | + | chr1_2:54989379-54989398 | None:intergenic | 25.0% |
| !!! | TTGTTATGGAGATTTTAGAA+TGG | - | chr1_2:54989470-54989489 | Msa0077920:intron | 25.0% |
| !!! | TGTTATGGAGATTTTAGAAT+GGG | - | chr1_2:54989471-54989490 | Msa0077920:intron | 25.0% |
| ! | GAATTACTAATCTGAATGAT+TGG | - | chr1_2:54989530-54989549 | Msa0077920:intron | 25.0% |
| ! | TACATATTAACTCATACTCA+TGG | + | chr1_2:54989559-54989578 | None:intergenic | 25.0% |
| ! | ATGAGTATGAGTTAATATGT+AGG | - | chr1_2:54989558-54989577 | Msa0077920:intron | 25.0% |
| ! | CTAAAAAGTAATAGAAGCTA+CGG | + | chr1_2:54989715-54989734 | None:intergenic | 25.0% |
| ! | ATTCTGAATTCACTTTGATA+AGG | - | chr1_2:54989944-54989963 | Msa0077920:intron | 25.0% |
| ! | TTCAGATCCTTTATATTGTT+AGG | - | chr1_2:54989976-54989995 | Msa0077920:CDS | 25.0% |
| ! | ATTGATATATGTAGGTTTCA+AGG | - | chr1_2:54990163-54990182 | Msa0077920:intron | 25.0% |
| !!! | AGAGCATTGAACAAATAATT+TGG | + | chr1_2:54990256-54990275 | None:intergenic | 25.0% |
| ! | AATTATTTGTTCAATGCTCT+CGG | - | chr1_2:54990256-54990275 | Msa0077920:intron | 25.0% |
| !!! | TATTCATTCAATTTTGGTAC+CGG | - | chr1_2:54990472-54990491 | Msa0077920:intron | 25.0% |
| !!! | TAAATTCATTTTTCCTCGTT+AGG | - | chr1_2:54990965-54990984 | Msa0077920:intron | 25.0% |
| ! | TAAATGGTGATAAGTGATAA+AGG | + | chr1_2:54991244-54991263 | None:intergenic | 25.0% |
| ! | TTTATCACTTATCACCATTT+AGG | - | chr1_2:54991243-54991262 | Msa0077920:intron | 25.0% |
| !! | AGTAAAAGAATGCATTCTTT+TGG | + | chr1_2:54991289-54991308 | None:intergenic | 25.0% |
| !! | AAAGAATGCATTCTTTTACT+TGG | - | chr1_2:54991289-54991308 | Msa0077920:intron | 25.0% |
| !! | AAGAATGCATTCTTTTACTT+GGG | - | chr1_2:54991290-54991309 | Msa0077920:intron | 25.0% |
| ! | TTGAATCATTTCTACAACAT+CGG | + | chr1_2:54991323-54991342 | None:intergenic | 25.0% |
| !! | TTTGGTATGTTTATGTGTTT+TGG | - | chr1_2:54991375-54991394 | Msa0077920:CDS | 25.0% |
| ! | AAACTTCCTGCATATTATTA+TGG | + | chr1_2:54991646-54991665 | None:intergenic | 25.0% |
| !! | CTAATAATCCTGTCATTTAA+TGG | + | chr1_2:54991680-54991699 | None:intergenic | 25.0% |
| ! | CATTAAATGACAGGATTATT+AGG | - | chr1_2:54991678-54991697 | Msa0077920:intron | 25.0% |
| ! | ATTCAAAATGGTTTCCTTTA+AGG | + | chr1_2:54991866-54991885 | None:intergenic | 25.0% |
| ! | TGAAGTCTGAATATTCAAAA+TGG | + | chr1_2:54991878-54991897 | None:intergenic | 25.0% |
| !!! | ATGATAGGATTTTTTCCTTT+TGG | - | chr1_2:54992115-54992134 | Msa0077920:intron | 25.0% |
| !!! | AGAAATTGTCGATTCAAAAT+TGG | - | chr1_2:54992511-54992530 | Msa0077920:intron | 25.0% |
| !!! | GAAATTGTCGATTCAAAATT+GGG | - | chr1_2:54992512-54992531 | Msa0077920:intron | 25.0% |
| !!! | AAATTGTCGATTCAAAATTG+GGG | - | chr1_2:54992513-54992532 | Msa0077920:intron | 25.0% |
| !!! | AAGTAAGTCTTTTGTTGTTT+TGG | - | chr1_2:54992540-54992559 | Msa0077920:intron | 25.0% |
| !!! | AGTAAGTCTTTTGTTGTTTT+GGG | - | chr1_2:54992541-54992560 | Msa0077920:intron | 25.0% |
| !!! | ATTGTAGAATGTTTTGATGA+TGG | - | chr1_2:54992588-54992607 | Msa0077920:intron | 25.0% |
| ! | TTCATTCAATTCACTATTCT+CGG | + | chr1_2:54992819-54992838 | None:intergenic | 25.0% |
| ! | ATAGTGAATTGAATGAAGTT+TGG | - | chr1_2:54992822-54992841 | Msa0077920:CDS | 25.0% |
| ! | CATGAATTTGATAAACCTTA+CGG | - | chr1_2:54993012-54993031 | Msa0077920:CDS | 25.0% |
| ! | TATCATTTATTCATTCCGTA+AGG | + | chr1_2:54993030-54993049 | None:intergenic | 25.0% |
| !! | AATAAGTCTTGACTATTTTG+GGG | + | chr1_2:54993100-54993119 | None:intergenic | 25.0% |
| !! | GAAATAAGTCTTGACTATTT+TGG | + | chr1_2:54993102-54993121 | None:intergenic | 25.0% |
| !!! | ATTAGCCTTTATATGAAAGA+AGG | - | chr1_2:54993741-54993760 | Msa0077920:intron | 25.0% |
| !! | ATTCAATTACCAAATTTTGG+GGG | + | chr1_2:54994069-54994088 | None:intergenic | 25.0% |
| !! | CCAATTCAATTACCAAATTT+TGG | + | chr1_2:54994072-54994091 | None:intergenic | 25.0% |
| !! | CCAAAATTTGGTAATTGAAT+TGG | - | chr1_2:54994069-54994088 | Msa0077920:intron | 25.0% |
| !!! | GTTGTTAACGTTTTATTTTG+CGG | - | chr1_2:54994272-54994291 | Msa0077920:five_prime_UTR | 25.0% |
| !!! | TTTTGTTTTTGTCCACTACT+AGG | - | chr1_2:54985806-54985825 | Msa0077920:three_prime_UTR | 30.0% |
| ATATTCACCCAACTCAATTA+TGG | - | chr1_2:54986018-54986037 | Msa0077920:CDS | 30.0% | |
| CTCAGCAATAGTTGAATAAT+GGG | + | chr1_2:54986300-54986319 | None:intergenic | 30.0% | |
| TGAATCAAGAGAAAAGACTA+CGG | - | chr1_2:54986493-54986512 | Msa0077920:intron | 30.0% | |
| ATATGTCATAGGAAACGATA+AGG | + | chr1_2:54986543-54986562 | None:intergenic | 30.0% | |
| GTACGAATGAACAATCAAAT+CGG | + | chr1_2:54986601-54986620 | None:intergenic | 30.0% | |
| TCTGAATTGGAATTAAAAGC+TGG | + | chr1_2:54986686-54986705 | None:intergenic | 30.0% | |
| ! | ATGTTCACTATGTTCTGAAT+TGG | + | chr1_2:54986699-54986718 | None:intergenic | 30.0% |
| GCACTGAATACAAAGAAAAT+AGG | + | chr1_2:54986845-54986864 | None:intergenic | 30.0% | |
| AATATCATGAAAAGAAGGCA+AGG | + | chr1_2:54987193-54987212 | None:intergenic | 30.0% | |
| AATGAAGTGATTAACTTACG+TGG | + | chr1_2:54987274-54987293 | None:intergenic | 30.0% | |
| ! | GAAATCTTCCAGATTCTTTT+TGG | - | chr1_2:54987366-54987385 | Msa0077920:CDS | 30.0% |
| GGAAACCACAAAATAAGAAT+AGG | + | chr1_2:54987489-54987508 | None:intergenic | 30.0% | |
| TGTGGTTTCCTTATTGTAAA+TGG | - | chr1_2:54987499-54987518 | Msa0077920:intron | 30.0% | |
| !!! | TCTTGGATTTTTTGCTCAAT+GGG | + | chr1_2:54987922-54987941 | None:intergenic | 30.0% |
| !!! | ATCTTGGATTTTTTGCTCAA+TGG | + | chr1_2:54987923-54987942 | None:intergenic | 30.0% |
| ! | AATCACTGGAAGAATGTTTT+TGG | - | chr1_2:54988210-54988229 | Msa0077920:intron | 30.0% |
| ! | ATCACTGGAAGAATGTTTTT+GGG | - | chr1_2:54988211-54988230 | Msa0077920:intron | 30.0% |
| TACCATGACTGAACAATTTA+GGG | - | chr1_2:54988464-54988483 | Msa0077920:intron | 30.0% | |
| ACCGATCATATCATTATTTG+TGG | - | chr1_2:54988608-54988627 | Msa0077920:intron | 30.0% | |
| CCCACAAATAATGATATGAT+CGG | + | chr1_2:54988612-54988631 | None:intergenic | 30.0% | |
| CCGATCATATCATTATTTGT+GGG | - | chr1_2:54988609-54988628 | Msa0077920:intron | 30.0% | |
| AAACACAAGATGAAGGAAAT+TGG | + | chr1_2:54988743-54988762 | None:intergenic | 30.0% | |
| TTCCAAGAAAACAGATTGAT+AGG | - | chr1_2:54988834-54988853 | Msa0077920:intron | 30.0% | |
| ! | ATCCTATCAATCTGTTTTCT+TGG | + | chr1_2:54988839-54988858 | None:intergenic | 30.0% |
| ! | ATTTCCTTCTTTTGTCAAAC+CGG | - | chr1_2:54988926-54988945 | Msa0077920:CDS | 30.0% |
| ATAATTATACTGCCAGCAAA+AGG | - | chr1_2:54989232-54989251 | Msa0077920:intron | 30.0% | |
| TAATTATACTGCCAGCAAAA+GGG | - | chr1_2:54989233-54989252 | Msa0077920:intron | 30.0% | |
| TCAAGTGATTTCAGTTCAAA+CGG | + | chr1_2:54989312-54989331 | None:intergenic | 30.0% | |
| TCACTAACATCTAAGTCATA+GGG | - | chr1_2:54989408-54989427 | Msa0077920:intron | 30.0% | |
| AGTTAATATGTAGGAGAATC+TGG | - | chr1_2:54989567-54989586 | Msa0077920:intron | 30.0% | |
| TTATTCCTAATTATTGGGAC+AGG | - | chr1_2:54989653-54989672 | Msa0077920:intron | 30.0% | |
| TAAATCCTGTCCCAATAATT+AGG | + | chr1_2:54989661-54989680 | None:intergenic | 30.0% | |
| TAACAAACCTCAACTATTGT+GGG | + | chr1_2:54990071-54990090 | None:intergenic | 30.0% | |
| AAGGACTTATAAAGATCTAC+AGG | - | chr1_2:54990283-54990302 | Msa0077920:intron | 30.0% | |
| ! | CTGAAGTAGATTGAGATTTT+TGG | - | chr1_2:54990525-54990544 | Msa0077920:intron | 30.0% |
| ATCTTGAAGGAATGACATAT+AGG | - | chr1_2:54990679-54990698 | Msa0077920:intron | 30.0% | |
| GCAGAATTTCATCATCATTT+GGG | + | chr1_2:54990862-54990881 | None:intergenic | 30.0% | |
| TGCAGAATTTCATCATCATT+TGG | + | chr1_2:54990863-54990882 | None:intergenic | 30.0% | |
| TGGCTTATTAGTATTCTGAA+GGG | + | chr1_2:54991006-54991025 | None:intergenic | 30.0% | |
| CACAAGTTATAACCACAAAT+GGG | - | chr1_2:54991024-54991043 | Msa0077920:intron | 30.0% | |
| TCTTACTTTACTCAATTCGA+TGG | + | chr1_2:54991105-54991124 | None:intergenic | 30.0% | |
| TGAATCATTTCTACAACATC+GGG | + | chr1_2:54991322-54991341 | None:intergenic | 30.0% | |
| TATACACTCACAAAAATGTG+TGG | + | chr1_2:54991414-54991433 | None:intergenic | 30.0% | |
| ! | GAAGACTGATTAAGGTTTTA+TGG | + | chr1_2:54991444-54991463 | None:intergenic | 30.0% |
| AACATAAGTATCTAAGTGGT+AGG | + | chr1_2:54991545-54991564 | None:intergenic | 30.0% | |
| CAGTAACATAAGTATCTAAG+TGG | + | chr1_2:54991549-54991568 | None:intergenic | 30.0% | |
| CACTTAGATACTTATGTTAC+TGG | - | chr1_2:54991547-54991566 | Msa0077920:intron | 30.0% | |
| GATACTTATGTTACTGGTAT+AGG | - | chr1_2:54991553-54991572 | Msa0077920:intron | 30.0% | |
| TTCTGACCATAATAATATGC+AGG | - | chr1_2:54991637-54991656 | Msa0077920:intron | 30.0% | |
| ATTATTAGGGAAAACATCGT+TGG | - | chr1_2:54991692-54991711 | Msa0077920:intron | 30.0% | |
| TTGTGCTTCTTACTATAGAT+TGG | - | chr1_2:54991820-54991839 | Msa0077920:CDS | 30.0% | |
| TATTCAGACTTCATTGAAGA+AGG | - | chr1_2:54991885-54991904 | Msa0077920:intron | 30.0% | |
| GATATGCAAGCAATTGAAAA+AGG | + | chr1_2:54991919-54991938 | None:intergenic | 30.0% | |
| GACAAGAAAAAATCTCAAGA+GGG | + | chr1_2:54992170-54992189 | None:intergenic | 30.0% | |
| ! | GAAAAGGGTCTTATAAAAAG+AGG | + | chr1_2:54992192-54992211 | None:intergenic | 30.0% |
| ! | TGACATAATTAGGAGTATGT+TGG | + | chr1_2:54992244-54992263 | None:intergenic | 30.0% |
| TACTCTTCATGAGAGAAAAT+TGG | + | chr1_2:54992315-54992334 | None:intergenic | 30.0% | |
| TCAACATTGTCCTATACTTA+AGG | - | chr1_2:54992403-54992422 | Msa0077920:intron | 30.0% | |
| !!! | GTAGAAGTTTTTAGTATGAC+TGG | - | chr1_2:54992431-54992450 | Msa0077920:intron | 30.0% |
| ! | TTAATCTTTTGTCCTCTTCT+CGG | - | chr1_2:54992715-54992734 | Msa0077920:intron | 30.0% |
| !!! | GCTTTAGCTTTTAATTGTTG+TGG | - | chr1_2:54992742-54992761 | Msa0077920:intron | 30.0% |
| TGATAAACGACAAATTAGTG+AGG | - | chr1_2:54993045-54993064 | Msa0077920:intron | 30.0% | |
| GATAAACGACAAATTAGTGA+GGG | - | chr1_2:54993046-54993065 | Msa0077920:intron | 30.0% | |
| TCTCTCCTTCTTTCATATAA+AGG | + | chr1_2:54993749-54993768 | None:intergenic | 30.0% | |
| ! | TTTCTGAGAGAGCATATTTA+AGG | - | chr1_2:54993787-54993806 | Msa0077920:intron | 30.0% |
| ! | TAATAACCTTTCCCATTTTC+AGG | - | chr1_2:54993911-54993930 | Msa0077920:intron | 30.0% |
| CAGCATAATTACAAAATGAC+CGG | + | chr1_2:54994023-54994042 | None:intergenic | 30.0% | |
| CACGAAATATTTGACTGACT+CGG | - | chr1_2:54985758-54985777 | Msa0077920:three_prime_UTR | 35.0% | |
| ACTTGTTCATCTTCAGTGTT+AGG | - | chr1_2:54985952-54985971 | Msa0077920:three_prime_UTR | 35.0% | |
| GATAGTACATAACATGTCAC+TGG | - | chr1_2:54986045-54986064 | Msa0077920:CDS | 35.0% | |
| CCTCAGCAATAGTTGAATAA+TGG | + | chr1_2:54986301-54986320 | None:intergenic | 35.0% | |
| CCATTATTCAACTATTGCTG+AGG | - | chr1_2:54986298-54986317 | Msa0077920:intron | 35.0% | |
| ACTATTGCTGAGGATGAATT+AGG | - | chr1_2:54986308-54986327 | Msa0077920:intron | 35.0% | |
| CGATAAGGACAGCAAAAAAA+AGG | + | chr1_2:54986528-54986547 | None:intergenic | 35.0% | |
| ! | CAATGAAGAGCATATGTCAT+AGG | + | chr1_2:54986554-54986573 | None:intergenic | 35.0% |
| !! | AAATTGGTGCTCACATTTTC+TGG | + | chr1_2:54986725-54986744 | None:intergenic | 35.0% |
| ATGTGAGCACCAATTTCATT+TGG | - | chr1_2:54986729-54986748 | Msa0077920:intron | 35.0% | |
| TTCCTCTGTCCAAATGAAAT+TGG | + | chr1_2:54986741-54986760 | None:intergenic | 35.0% | |
| GGAAAATAATAGTAGCTCTC+AGG | - | chr1_2:54986757-54986776 | Msa0077920:intron | 35.0% | |
| AAGAAATGCGTGGAAAAGTT+TGG | - | chr1_2:54986781-54986800 | Msa0077920:intron | 35.0% | |
| CTGACACATACAAAGTTTGT+TGG | - | chr1_2:54987042-54987061 | Msa0077920:intron | 35.0% | |
| ACGTCTAATTTAAGTGGCTT+AGG | + | chr1_2:54987168-54987187 | None:intergenic | 35.0% | |
| AAGGAGACGTCTAATTTAAG+TGG | + | chr1_2:54987174-54987193 | None:intergenic | 35.0% | |
| !! | AAGAAGCACCAAAAAGAATC+TGG | + | chr1_2:54987377-54987396 | None:intergenic | 35.0% |
| !! | TGCATCTCGTTTGTTTTCAT+TGG | - | chr1_2:54987403-54987422 | Msa0077920:intron | 35.0% |
| !! | ATCTCGTTTGTTTTCATTGG+AGG | - | chr1_2:54987406-54987425 | Msa0077920:intron | 35.0% |
| GTTTCTTGTTCTTCAAGCTA+AGG | - | chr1_2:54987428-54987447 | Msa0077920:intron | 35.0% | |
| AAAGTATGTGTGAATCTGTG+TGG | - | chr1_2:54987605-54987624 | Msa0077920:intron | 35.0% | |
| ACCATACAACTAAATCGAGA+TGG | - | chr1_2:54987762-54987781 | Msa0077920:intron | 35.0% | |
| TCCATCTCGATTTAGTTGTA+TGG | + | chr1_2:54987766-54987785 | None:intergenic | 35.0% | |
| CAACTAAATCGAGATGGAAA+CGG | - | chr1_2:54987768-54987787 | Msa0077920:intron | 35.0% | |
| AATCTGCCAAAACATGTCTT+AGG | - | chr1_2:54987841-54987860 | Msa0077920:intron | 35.0% | |
| ! | CAATCTCCTAAGACATGTTT+TGG | + | chr1_2:54987850-54987869 | None:intergenic | 35.0% |
| !!! | AGTTTTCAGGACTAGTTTAC+CGG | + | chr1_2:54987899-54987918 | None:intergenic | 35.0% |
| ATTTCTTGGAAACATGGGTT+GGG | + | chr1_2:54987961-54987980 | None:intergenic | 35.0% | |
| AATTTCTTGGAAACATGGGT+TGG | + | chr1_2:54987962-54987981 | None:intergenic | 35.0% | |
| ! | AATCAAATTTTAAGCTGCCG+AGG | + | chr1_2:54988122-54988141 | None:intergenic | 35.0% |
| GGGCCATTATTAAATTATCC+AGG | - | chr1_2:54988177-54988196 | Msa0077920:CDS | 35.0% | |
| CAGTGATTGTTTATTGTTCC+TGG | + | chr1_2:54988198-54988217 | None:intergenic | 35.0% | |
| CAGGAACAATAAACAATCAC+TGG | - | chr1_2:54988196-54988215 | Msa0077920:intron | 35.0% | |
| ! | CCAACAAAATGTGTGTCATT+TGG | + | chr1_2:54988360-54988379 | None:intergenic | 35.0% |
| ! | CCAAATGACACACATTTTGT+TGG | - | chr1_2:54988357-54988376 | Msa0077920:CDS | 35.0% |
| !! | TTGGCTTTGTTCTTGCAATA+TGG | - | chr1_2:54988412-54988431 | Msa0077920:intron | 35.0% |
| !! | TGGCTTTGTTCTTGCAATAT+GGG | - | chr1_2:54988413-54988432 | Msa0077920:intron | 35.0% |
| GTACCATGACTGAACAATTT+AGG | - | chr1_2:54988463-54988482 | Msa0077920:intron | 35.0% | |
| TACCCTAAATTGTTCAGTCA+TGG | + | chr1_2:54988469-54988488 | None:intergenic | 35.0% | |
| GCAATCAAAACACAAGATGA+AGG | + | chr1_2:54988750-54988769 | None:intergenic | 35.0% | |
| !!! | TCATCTTGTGTTTTGATTGC+TGG | - | chr1_2:54988750-54988769 | Msa0077920:CDS | 35.0% |
| ! | ATGTCGTTTCATTTCTATGC+AGG | - | chr1_2:54988783-54988802 | Msa0077920:intron | 35.0% |
| TTGGAAGATCAGACATAAGA+AGG | + | chr1_2:54988820-54988839 | None:intergenic | 35.0% | |
| ATATTGATCTCCTTAGCAAG+AGG | - | chr1_2:54988888-54988907 | Msa0077920:CDS | 35.0% | |
| AATTATACTGCCAGCAAAAG+GGG | - | chr1_2:54989234-54989253 | Msa0077920:intron | 35.0% | |
| GTCACTAACATCTAAGTCAT+AGG | - | chr1_2:54989407-54989426 | Msa0077920:intron | 35.0% | |
| CACTAACATCTAAGTCATAG+GGG | - | chr1_2:54989409-54989428 | Msa0077920:intron | 35.0% | |
| ! | AGTGTCTGCTTAAGTTGTTA+TGG | - | chr1_2:54989456-54989475 | Msa0077920:intron | 35.0% |
| !!! | TATGGAGATTTTAGAATGGG+TGG | - | chr1_2:54989474-54989493 | Msa0077920:intron | 35.0% |
| !!! | ATGGAGATTTTAGAATGGGT+GGG | - | chr1_2:54989475-54989494 | Msa0077920:intron | 35.0% |
| ATATTAGCAGTGAAGTCACT+AGG | + | chr1_2:54989793-54989812 | None:intergenic | 35.0% | |
| AAAACAACTCGAGCTATCTA+TGG | + | chr1_2:54989896-54989915 | None:intergenic | 35.0% | |
| ! | CATATCTGGAATTGGTTGAA+GGG | + | chr1_2:54990039-54990058 | None:intergenic | 35.0% |
| CTTCAACCAATTCCAGATAT+GGG | - | chr1_2:54990038-54990057 | Msa0077920:intron | 35.0% | |
| AACAAACCTCAACTATTGTG+GGG | + | chr1_2:54990070-54990089 | None:intergenic | 35.0% | |
| GTAACAAACCTCAACTATTG+TGG | + | chr1_2:54990072-54990091 | None:intergenic | 35.0% | |
| CTTCAACAAGTCACATGTTT+GGG | + | chr1_2:54990190-54990209 | None:intergenic | 35.0% | |
| ACTTCAACAAGTCACATGTT+TGG | + | chr1_2:54990191-54990210 | None:intergenic | 35.0% | |
| !! | TGACTTGTTGAAGTCAATCT+CGG | - | chr1_2:54990197-54990216 | Msa0077920:intron | 35.0% |
| TATGTCATTCCTTCAAGATC+AGG | + | chr1_2:54990678-54990697 | None:intergenic | 35.0% | |
| TTATTTCAGGCTGTTGTATG+TGG | - | chr1_2:54990806-54990825 | Msa0077920:CDS | 35.0% | |
| !! | GGAAGTATATTTTCCCATTC+CGG | + | chr1_2:54990838-54990857 | None:intergenic | 35.0% |
| GAATTTCATCATCATTTGGG+TGG | + | chr1_2:54990859-54990878 | None:intergenic | 35.0% | |
| GTGGCTTATTAGTATTCTGA+AGG | + | chr1_2:54991007-54991026 | None:intergenic | 35.0% | |
| CCATTTGTGGTTATAACTTG+TGG | + | chr1_2:54991026-54991045 | None:intergenic | 35.0% | |
| CCACAAGTTATAACCACAAA+TGG | - | chr1_2:54991023-54991042 | Msa0077920:intron | 35.0% | |
| ATAACCACAAATGGGAAAGA+AGG | - | chr1_2:54991032-54991051 | Msa0077920:intron | 35.0% | |
| ! | TTTTCCTTCTTTCCCATTTG+TGG | + | chr1_2:54991039-54991058 | None:intergenic | 35.0% |
| AATGGGAAAGAAGGAAAAGA+TGG | - | chr1_2:54991041-54991060 | Msa0077920:intron | 35.0% | |
| ! | AATGCATTCTTTTACTTGGG+TGG | - | chr1_2:54991293-54991312 | Msa0077920:intron | 35.0% |
| ! | CAAGAGTATGAGAACTATCT+CGG | - | chr1_2:54991340-54991359 | Msa0077920:CDS | 35.0% |
| AAACATACCAAAACACTTCC+AGG | + | chr1_2:54991367-54991386 | None:intergenic | 35.0% | |
| ! | GTGGTAGGATATTGCATTTT+CGG | + | chr1_2:54991530-54991549 | None:intergenic | 35.0% |
| CAATGTCATGTATCTTCTGA+TGG | + | chr1_2:54991596-54991615 | None:intergenic | 35.0% | |
| CATCAGAAGATACATGACAT+TGG | - | chr1_2:54991594-54991613 | Msa0077920:CDS | 35.0% | |
| ! | AGAATGTTCGAGTTTCTCAT+AGG | - | chr1_2:54991729-54991748 | Msa0077920:intron | 35.0% |
| ! | GAATGTTCGAGTTTCTCATA+GGG | - | chr1_2:54991730-54991749 | Msa0077920:intron | 35.0% |
| CTTGCATATCTGACAAAGAT+TGG | - | chr1_2:54991929-54991948 | Msa0077920:intron | 35.0% | |
| TCTGCAAAAACAAAAGTCAG+TGG | + | chr1_2:54992003-54992022 | None:intergenic | 35.0% | |
| GAAAATATCTGCGACAAACT+TGG | - | chr1_2:54992069-54992088 | Msa0077920:intron | 35.0% | |
| GGACAAGAAAAAATCTCAAG+AGG | + | chr1_2:54992171-54992190 | None:intergenic | 35.0% | |
| ! | GACAATGTTGACTAAATCAG+AGG | + | chr1_2:54992394-54992413 | None:intergenic | 35.0% |
| CATTGTCCTATACTTAAGGA+CGG | - | chr1_2:54992407-54992426 | Msa0077920:intron | 35.0% | |
| !!! | AGTTTTTAGTATGACTGGAG+AGG | - | chr1_2:54992436-54992455 | Msa0077920:intron | 35.0% |
| TACTCATCGTTGGATTGAAT+TGG | - | chr1_2:54992460-54992479 | Msa0077920:intron | 35.0% | |
| GATTGAATTGGCTGTTATGT+AGG | - | chr1_2:54992472-54992491 | Msa0077920:intron | 35.0% | |
| AAAGACATACTAGATGCAGA+GGG | - | chr1_2:54992845-54992864 | Msa0077920:CDS | 35.0% | |
| GGGTGATGAAATATATGTGA+AGG | - | chr1_2:54992865-54992884 | Msa0077920:CDS | 35.0% | |
| ATCTACTCATGTTGTGATTG+TGG | - | chr1_2:54992892-54992911 | Msa0077920:CDS | 35.0% | |
| GTATGTAATCATTACGACTG+TGG | - | chr1_2:54992929-54992948 | Msa0077920:CDS | 35.0% | |
| GCTAGGAAACATTCAAATAG+AGG | + | chr1_2:54992979-54992998 | None:intergenic | 35.0% | |
| TCAACTAGCAAGTGTATGTT+TGG | - | chr1_2:54993126-54993145 | Msa0077920:intron | 35.0% | |
| ! | TGTATGTTTGGAACTTACTG+TGG | - | chr1_2:54993138-54993157 | Msa0077920:intron | 35.0% |
| ! | TACTGTGGCGAACATAATTT+TGG | - | chr1_2:54993153-54993172 | Msa0077920:intron | 35.0% |
| ! | ACTGTGGCGAACATAATTTT+GGG | - | chr1_2:54993154-54993173 | Msa0077920:intron | 35.0% |
| GGATCATCATTATTCCTTCT+AGG | + | chr1_2:54993202-54993221 | None:intergenic | 35.0% | |
| ! | GTTTGAAGCAAAGCTGTAAA+AGG | + | chr1_2:54993223-54993242 | None:intergenic | 35.0% |
| TTGCTCGTGATACACTAATT+TGG | - | chr1_2:54993333-54993352 | Msa0077920:CDS | 35.0% | |
| ACTAGAACATGATTCAGTTG+AGG | - | chr1_2:54993432-54993451 | Msa0077920:intron | 35.0% | |
| ATCATAACAAACGACCAACT+GGG | - | chr1_2:54993645-54993664 | Msa0077920:intron | 35.0% | |
| GTTCTTCTTCACATAACCTA+TGG | + | chr1_2:54993823-54993842 | None:intergenic | 35.0% | |
| TGATTACCTGAAAATGGGAA+AGG | + | chr1_2:54993920-54993939 | None:intergenic | 35.0% | |
| !! | TGGGTTGATTACCTGAAAAT+GGG | + | chr1_2:54993925-54993944 | None:intergenic | 35.0% |
| !! | TTGGGTTGATTACCTGAAAA+TGG | + | chr1_2:54993926-54993945 | None:intergenic | 35.0% |
| ! | ATTGATAGTCATATCTGAGC+TGG | - | chr1_2:54993986-54994005 | Msa0077920:intron | 35.0% |
| AAATTCTGACCCCCAAAATT+TGG | - | chr1_2:54994057-54994076 | Msa0077920:intron | 35.0% | |
| ACACCAACAACAAGAATTCC+AGG | - | chr1_2:54985928-54985947 | Msa0077920:three_prime_UTR | 40.0% | |
| ! | GTACCTGGAATTCTTGTTGT+TGG | + | chr1_2:54985934-54985953 | None:intergenic | 40.0% |
| ACTGAAGATGAACAAGTACC+TGG | + | chr1_2:54985949-54985968 | None:intergenic | 40.0% | |
| CCATGACTCGTGAAATTACA+AGG | + | chr1_2:54986081-54986100 | None:intergenic | 40.0% | |
| CCTTGTAATTTCACGAGTCA+TGG | - | chr1_2:54986078-54986097 | Msa0077920:CDS | 40.0% | |
| !!! | GATGGCAGGTTGATTTTCAA+AGG | - | chr1_2:54986660-54986679 | Msa0077920:intron | 40.0% |
| CACCAATTTCATTTGGACAG+AGG | - | chr1_2:54986736-54986755 | Msa0077920:intron | 40.0% | |
| GCACATATCGAACTATTGCT+TGG | + | chr1_2:54987086-54987105 | None:intergenic | 40.0% | |
| AAGTGGCTTAGGTGTATTCA+AGG | + | chr1_2:54987157-54987176 | None:intergenic | 40.0% | |
| ATATTAGATGGAGCTTAGCG+CGG | - | chr1_2:54987208-54987227 | Msa0077920:CDS | 40.0% | |
| ! | TCCTTTTTGTCAAGGCTTCT+GGG | + | chr1_2:54987539-54987558 | None:intergenic | 40.0% |
| ! | TTCCTTTTTGTCAAGGCTTC+TGG | + | chr1_2:54987540-54987559 | None:intergenic | 40.0% |
| GTAACAAGTAATGATCACCG+TGG | + | chr1_2:54987707-54987726 | None:intergenic | 40.0% | |
| AGTTGTATGGTGCGTTTACT+TGG | + | chr1_2:54987753-54987772 | None:intergenic | 40.0% | |
| AAATCGAGATGGAAACGGAA+TGG | - | chr1_2:54987773-54987792 | Msa0077920:intron | 40.0% | |
| CTCTGAGTCATACCAAATTG+CGG | - | chr1_2:54987805-54987824 | Msa0077920:intron | 40.0% | |
| AGCATTGTGATTCCGCAATT+TGG | + | chr1_2:54987820-54987839 | None:intergenic | 40.0% | |
| TCATATACAACTTGTGGAGC+CGG | - | chr1_2:54987877-54987896 | Msa0077920:intron | 40.0% | |
| ! | TTTGCTCAATGGGAGTTTTC+AGG | + | chr1_2:54987912-54987931 | None:intergenic | 40.0% |
| ! | GTTTGTTACCACAGAGTCAT+GGG | - | chr1_2:54988057-54988076 | Msa0077920:intron | 40.0% |
| AAAATGATCCCATGACTCTG+TGG | + | chr1_2:54988068-54988087 | None:intergenic | 40.0% | |
| !!! | ACTGGAAGAATGTTTTTGGG+AGG | - | chr1_2:54988214-54988233 | Msa0077920:intron | 40.0% |
| !!! | AAGAATGTTTTTGGGAGGCA+TGG | - | chr1_2:54988219-54988238 | Msa0077920:intron | 40.0% |
| !!! | AGAATGTTTTTGGGAGGCAT+GGG | - | chr1_2:54988220-54988239 | Msa0077920:intron | 40.0% |
| ATAACACGCTCAATACGTGT+TGG | + | chr1_2:54988393-54988412 | None:intergenic | 40.0% | |
| ACACGTATTGAGCGTGTTAT+TGG | - | chr1_2:54988393-54988412 | Msa0077920:intron | 40.0% | |
| !! | GGCTTTGTTCTTGCAATATG+GGG | - | chr1_2:54988414-54988433 | Msa0077920:intron | 40.0% |
| CGCAACAGAGTAATATGCAA+AGG | - | chr1_2:54988552-54988571 | Msa0077920:intron | 40.0% | |
| AGAGTAATATGCAAAGGCTC+AGG | - | chr1_2:54988558-54988577 | Msa0077920:intron | 40.0% | |
| GAGTAATATGCAAAGGCTCA+GGG | - | chr1_2:54988559-54988578 | Msa0077920:intron | 40.0% | |
| !! | AAAGCCGGTTTGACAAAAGA+AGG | + | chr1_2:54988933-54988952 | None:intergenic | 40.0% |
| TTAGGATTGCTCAGTGCATT+GGG | - | chr1_2:54988990-54989009 | Msa0077920:CDS | 40.0% | |
| AGAGAGAGAGAGCTGAAAAT+TGG | - | chr1_2:54989508-54989527 | Msa0077920:intron | 40.0% | |
| AGTAATAGAAGCTACGGTCT+AGG | + | chr1_2:54989709-54989728 | None:intergenic | 40.0% | |
| !! | AGCTCTAGGTTATTCGATCT+AGG | - | chr1_2:54989753-54989772 | Msa0077920:CDS | 40.0% |
| ! | GCTCTAGGTTATTCGATCTA+GGG | - | chr1_2:54989754-54989773 | Msa0077920:CDS | 40.0% |
| TTTACTTGCCTCGTAGTGTT+CGG | - | chr1_2:54989864-54989883 | Msa0077920:intron | 40.0% | |
| ! | CCATATCTGGAATTGGTTGA+AGG | + | chr1_2:54990040-54990059 | None:intergenic | 40.0% |
| CCTTCAACCAATTCCAGATA+TGG | - | chr1_2:54990037-54990056 | Msa0077920:intron | 40.0% | |
| ! | ACAGAACCCATATCTGGAAT+TGG | + | chr1_2:54990047-54990066 | None:intergenic | 40.0% |
| !! | GACTTGTTGAAGTCAATCTC+GGG | - | chr1_2:54990198-54990217 | Msa0077920:intron | 40.0% |
| ! | ACTTGTTGAAGTCAATCTCG+GGG | - | chr1_2:54990199-54990218 | Msa0077920:intron | 40.0% |
| TTGGATGCAACATCTTCTAC+TGG | + | chr1_2:54990237-54990256 | None:intergenic | 40.0% | |
| TTTCGATTTCTCGGATGAGT+TGG | - | chr1_2:54990495-54990514 | Msa0077920:intron | 40.0% | |
| TGCCCTACACATATCTATTC+CGG | - | chr1_2:54990595-54990614 | Msa0077920:intron | 40.0% | |
| CACCGGAATAGATATGTGTA+GGG | + | chr1_2:54990600-54990619 | None:intergenic | 40.0% | |
| ACACCGGAATAGATATGTGT+AGG | + | chr1_2:54990601-54990620 | None:intergenic | 40.0% | |
| CTGTTGTATGTGGTCTTTAC+CGG | - | chr1_2:54990816-54990835 | Msa0077920:CDS | 40.0% | |
| TATGTGGTCTTTACCGGAAT+GGG | - | chr1_2:54990822-54990841 | Msa0077920:CDS | 40.0% | |
| ! | GTCGTGTCTACCTTTTATCT+TGG | - | chr1_2:54990936-54990955 | Msa0077920:intron | 40.0% |
| CCAATGAACAATACCTAACG+AGG | + | chr1_2:54990981-54991000 | None:intergenic | 40.0% | |
| ! | CCTCGTTAGGTATTGTTCAT+TGG | - | chr1_2:54990978-54990997 | Msa0077920:intron | 40.0% |
| ACCTTAATCAGTCTTCCTCT+TGG | - | chr1_2:54991448-54991467 | Msa0077920:CDS | 40.0% | |
| ACCAAGAGGAAGACTGATTA+AGG | + | chr1_2:54991452-54991471 | None:intergenic | 40.0% | |
| !! | TTATTGTTTTGCGGACCAAG+AGG | + | chr1_2:54991466-54991485 | None:intergenic | 40.0% |
| ACTATAGATTGGAAACCCCA+TGG | - | chr1_2:54991831-54991850 | Msa0077920:intron | 40.0% | |
| !! | TCTGACAAAGATTGGCTTCT+TGG | - | chr1_2:54991937-54991956 | Msa0077920:intron | 40.0% |
| AGCAGATAGCTTATCTGTCT+TGG | + | chr1_2:54992031-54992050 | None:intergenic | 40.0% | |
| ! | CGCAGATATTTTCTGCAAGT+AGG | + | chr1_2:54992062-54992081 | None:intergenic | 40.0% |
| TCTACTCCGTCCTTAAGTAT+AGG | + | chr1_2:54992416-54992435 | None:intergenic | 40.0% | |
| AATGACCTTGAGCAGTTACA+AGG | + | chr1_2:54992697-54992716 | None:intergenic | 40.0% | |
| GAAAGACATACTAGATGCAG+AGG | - | chr1_2:54992844-54992863 | Msa0077920:CDS | 40.0% | |
| CATGCACGAAATTTCATGCT+AGG | + | chr1_2:54992996-54993015 | None:intergenic | 40.0% | |
| ATCATTATTCCTTCTAGGCC+TGG | + | chr1_2:54993197-54993216 | None:intergenic | 40.0% | |
| TTCACATGGTTTACCAAACG+TGG | - | chr1_2:54993257-54993276 | Msa0077920:intron | 40.0% | |
| ATCACGAGCAAAGCTAACAA+TGG | + | chr1_2:54993324-54993343 | None:intergenic | 40.0% | |
| TCGTGATACACTAATTTGGC+AGG | - | chr1_2:54993337-54993356 | Msa0077920:CDS | 40.0% | |
| ATACACTAATTTGGCAGGCA+TGG | - | chr1_2:54993342-54993361 | Msa0077920:CDS | 40.0% | |
| TACACTAATTTGGCAGGCAT+GGG | - | chr1_2:54993343-54993362 | Msa0077920:CDS | 40.0% | |
| TTGTAACCCTCTGATTTCCA+GGG | + | chr1_2:54993539-54993558 | None:intergenic | 40.0% | |
| !! | CAGTTGGTCGTTTGTTATGA+TGG | + | chr1_2:54993646-54993665 | None:intergenic | 40.0% |
| CATCATAACAAACGACCAAC+TGG | - | chr1_2:54993644-54993663 | Msa0077920:intron | 40.0% | |
| TCATAACAAACGACCAACTG+GGG | - | chr1_2:54993646-54993665 | Msa0077920:intron | 40.0% | |
| ATGCATACTTAATCCCCAGT+TGG | + | chr1_2:54993662-54993681 | None:intergenic | 40.0% | |
| TCAGAAAGCTCGGAAAATGA+TGG | + | chr1_2:54993774-54993793 | None:intergenic | 40.0% | |
| ATATGCTCTCTCAGAAAGCT+CGG | + | chr1_2:54993784-54993803 | None:intergenic | 40.0% | |
| TTAAGGAGAGAAGTAGCCAT+AGG | - | chr1_2:54993804-54993823 | Msa0077920:intron | 40.0% | |
| TCAGTCAATTCAAGAGAGAG+GGG | + | chr1_2:54993963-54993982 | None:intergenic | 40.0% | |
| GTCAGTCAATTCAAGAGAGA+GGG | + | chr1_2:54993964-54993983 | None:intergenic | 40.0% | |
| AGTCAGTCAATTCAAGAGAG+AGG | + | chr1_2:54993965-54993984 | None:intergenic | 40.0% | |
| ATAGTCATATCTGAGCTGGA+AGG | - | chr1_2:54993990-54994009 | Msa0077920:intron | 40.0% | |
| AAGTGAGTGAGATTCATGGC+TGG | + | chr1_2:54985849-54985868 | None:intergenic | 45.0% | |
| GTGGAAGTGAGTGAGATTCA+TGG | + | chr1_2:54985853-54985872 | None:intergenic | 45.0% | |
| TATGTGTGCCTTGGAATCCA+TGG | + | chr1_2:54985891-54985910 | None:intergenic | 45.0% | |
| GATTGCTTGTGATGCTTCAC+AGG | - | chr1_2:54986378-54986397 | Msa0077920:intron | 45.0% | |
| CTTCACCTTCTCCATTACAC+AGG | - | chr1_2:54986435-54986454 | Msa0077920:intron | 45.0% | |
| ATGTAAACCCTGTAGGGAGA+TGG | - | chr1_2:54986642-54986661 | Msa0077920:intron | 45.0% | |
| TATGTGCCTCAGACTCTTGA+CGG | - | chr1_2:54987099-54987118 | Msa0077920:intron | 45.0% | |
| ! | CCTTTTTGTCAAGGCTTCTG+GGG | + | chr1_2:54987538-54987557 | None:intergenic | 45.0% |
| !! | GGTTTGTTACCACAGAGTCA+TGG | - | chr1_2:54988056-54988075 | Msa0077920:intron | 45.0% |
| CTAACGACCCAATTAGACCT+CGG | - | chr1_2:54988102-54988121 | Msa0077920:CDS | 45.0% | |
| TAAGCTGCCGAGGTCTAATT+GGG | + | chr1_2:54988112-54988131 | None:intergenic | 45.0% | |
| TTAAGCTGCCGAGGTCTAAT+TGG | + | chr1_2:54988113-54988132 | None:intergenic | 45.0% | |
| TAATATGCAAAGGCTCAGGG+AGG | - | chr1_2:54988562-54988581 | Msa0077920:intron | 45.0% | |
| AATATGCAAAGGCTCAGGGA+GGG | - | chr1_2:54988563-54988582 | Msa0077920:intron | 45.0% | |
| CTTAGGATTGCTCAGTGCAT+TGG | - | chr1_2:54988989-54989008 | Msa0077920:CDS | 45.0% | |
| TATATCGTGTCAGCAGCTCT+AGG | - | chr1_2:54989739-54989758 | Msa0077920:CDS | 45.0% | |
| GCAAGTAAACAGTCGATGGA+TGG | + | chr1_2:54989853-54989872 | None:intergenic | 45.0% | |
| GGAATTAACCGAACACTACG+AGG | + | chr1_2:54989875-54989894 | None:intergenic | 45.0% | |
| TTCTGTCCCCACAATAGTTG+AGG | - | chr1_2:54990061-54990080 | Msa0077920:intron | 45.0% | |
| !! | TGGTACCGGTTTCGATTTCT+CGG | - | chr1_2:54990486-54990505 | Msa0077920:intron | 45.0% |
| CTCATCCGAGAAATCGAAAC+CGG | + | chr1_2:54990494-54990513 | None:intergenic | 45.0% | |
| GTATGTGGTCTTTACCGGAA+TGG | - | chr1_2:54990821-54990840 | Msa0077920:CDS | 45.0% | |
| ! | TCCTAACAGATCTGGTTCCA+AGG | - | chr1_2:54991145-54991164 | Msa0077920:CDS | 45.0% |
| ACCTTGGAACCAGATCTGTT+AGG | + | chr1_2:54991149-54991168 | None:intergenic | 45.0% | |
| CAGAACAGCAAGTCATACCT+TGG | + | chr1_2:54991165-54991184 | None:intergenic | 45.0% | |
| ! | TTTCGACGAGTGCTATTCTG+CGG | - | chr1_2:54991199-54991218 | Msa0077920:CDS | 45.0% |
| ATCACCATTTAGGCAGCAGA+CGG | - | chr1_2:54991253-54991272 | Msa0077920:intron | 45.0% | |
| TATGAGAACTATCTCGGTCC+TGG | - | chr1_2:54991346-54991365 | Msa0077920:CDS | 45.0% | |
| CAGAGACGCCATTAAATGAC+AGG | - | chr1_2:54991669-54991688 | Msa0077920:intron | 45.0% | |
| ! | ATTGGAAACCCCATGGACTA+CGG | - | chr1_2:54991838-54991857 | Msa0077920:intron | 45.0% |
| !! | TTTAAGGTGCCGTAGTCCAT+GGG | + | chr1_2:54991850-54991869 | None:intergenic | 45.0% |
| !! | GACAAAGATTGGCTTCTTGG+AGG | - | chr1_2:54991940-54991959 | Msa0077920:intron | 45.0% |
| ! | TTGAGCCTTGTAACTGCTCA+AGG | - | chr1_2:54992689-54992708 | Msa0077920:intron | 45.0% |
| GAAAACACTTGCAAAGCTCC+AGG | - | chr1_2:54993176-54993195 | Msa0077920:intron | 45.0% | |
| AAACGTTCGCTTGCTTCACA+TGG | - | chr1_2:54993243-54993262 | Msa0077920:intron | 45.0% | |
| ! | GGTTTACCAAACGTGGACTA+AGG | - | chr1_2:54993264-54993283 | Msa0077920:CDS | 45.0% |
| TGAGGATGAATCGTTCTGAC+TGG | - | chr1_2:54993450-54993469 | Msa0077920:intron | 45.0% | |
| TGGTAATCCGGAGTTCAACT+GGG | + | chr1_2:54993505-54993524 | None:intergenic | 45.0% | |
| ! | GGAAATGGACTCTGGTAATC+CGG | + | chr1_2:54993517-54993536 | None:intergenic | 45.0% |
| CATTTCCCCTGGAAATCAGA+GGG | - | chr1_2:54993530-54993549 | Msa0077920:intron | 45.0% | |
| TGTAACCCTCTGATTTCCAG+GGG | + | chr1_2:54993538-54993557 | None:intergenic | 45.0% | |
| GTTGTAACCCTCTGATTTCC+AGG | + | chr1_2:54993540-54993559 | None:intergenic | 45.0% | |
| CAGCATTGCAGTTAACTCGA+AGG | - | chr1_2:54993693-54993712 | Msa0077920:intron | 45.0% | |
| !! | GGGGTTCTGACTTTGGAATT+GGG | + | chr1_2:54993944-54993963 | None:intergenic | 45.0% |
| !! | AGGGGTTCTGACTTTGGAAT+TGG | + | chr1_2:54993945-54993964 | None:intergenic | 45.0% |
| TCTCACTCTGCTCCTAGTAG+TGG | + | chr1_2:54985821-54985840 | None:intergenic | 50.0% | |
| ! | ATGGAAGACAGGAGTGCATG+TGG | + | chr1_2:54985872-54985891 | None:intergenic | 50.0% |
| ACATGCACTCCTGTCTTCCA+TGG | - | chr1_2:54985871-54985890 | Msa0077920:three_prime_UTR | 50.0% | |
| CCTTGGAATCCATGGAAGAC+AGG | + | chr1_2:54985883-54985902 | None:intergenic | 50.0% | |
| CCTGTCTTCCATGGATTCCA+AGG | - | chr1_2:54985880-54985899 | Msa0077920:three_prime_UTR | 50.0% | |
| GATGAGCAGTATGTGTGCCT+TGG | + | chr1_2:54985900-54985919 | None:intergenic | 50.0% | |
| TGCTTGTGATGCTTCACAGG+AGG | - | chr1_2:54986381-54986400 | Msa0077920:intron | 50.0% | |
| GCTTGTGATGCTTCACAGGA+GGG | - | chr1_2:54986382-54986401 | Msa0077920:intron | 50.0% | |
| TTGTGCCCTGTCATATCAGC+TGG | - | chr1_2:54986405-54986424 | Msa0077920:intron | 50.0% | |
| CTGAGCCAGCTGATATGACA+GGG | + | chr1_2:54986413-54986432 | None:intergenic | 50.0% | |
| CGAATACCACGCCTGTGTAA+TGG | + | chr1_2:54986449-54986468 | None:intergenic | 50.0% | |
| GGTATTCGACCACACACTGA+AGG | - | chr1_2:54986461-54986480 | Msa0077920:intron | 50.0% | |
| TGCAACTCACCTTCAGTGTG+TGG | + | chr1_2:54986473-54986492 | None:intergenic | 50.0% | |
| GCTCTCAGGTAAGAAATGCG+TGG | - | chr1_2:54986771-54986790 | Msa0077920:intron | 50.0% | |
| GAAATGCCGCATGTGCTACA+GGG | - | chr1_2:54986967-54986986 | Msa0077920:intron | 50.0% | |
| CTTGTTCCGTCAAGAGTCTG+AGG | + | chr1_2:54987108-54987127 | None:intergenic | 50.0% | |
| GACTCTTGACGGAACAAGCT+TGG | - | chr1_2:54987110-54987129 | Msa0077920:intron | 50.0% | |
| CCCCAGAAGCCTTGACAAAA+AGG | - | chr1_2:54987535-54987554 | Msa0077920:intron | 50.0% | |
| GCTTTACATGTGTGCTGCCA+CGG | - | chr1_2:54987687-54987706 | Msa0077920:intron | 50.0% | |
| !! | CAATACGTGTTGGTTGCTGC+AGG | + | chr1_2:54988383-54988402 | None:intergenic | 50.0% |
| ! | GGGAGCACAAATGCAAGTCA+TGG | - | chr1_2:54988583-54988602 | Msa0077920:intron | 50.0% |
| !! | AGCGTCGATACCTCTTGCTA+AGG | + | chr1_2:54988901-54988920 | None:intergenic | 50.0% |
| !! | TTAGCAAGAGGTATCGACGC+TGG | - | chr1_2:54988900-54988919 | Msa0077920:CDS | 50.0% |
| !! | TAGCAAGAGGTATCGACGCT+GGG | - | chr1_2:54988901-54988920 | Msa0077920:CDS | 50.0% |
| TACTGCCAGCAAAAGGGGAT+CGG | - | chr1_2:54989239-54989258 | Msa0077920:intron | 50.0% | |
| ! | ACTTACCGATCCCCTTTTGC+TGG | + | chr1_2:54989247-54989266 | None:intergenic | 50.0% |
| GCAGTGAAGTCACTAGGAGA+GGG | + | chr1_2:54989787-54989806 | None:intergenic | 50.0% | |
| AGCAGTGAAGTCACTAGGAG+AGG | + | chr1_2:54989788-54989807 | None:intergenic | 50.0% | |
| CGAGGCAAGTAAACAGTCGA+TGG | + | chr1_2:54989857-54989876 | None:intergenic | 50.0% | |
| GTTCAATGCTCTCGGCAGAA+AGG | - | chr1_2:54990264-54990283 | Msa0077920:intron | 50.0% | |
| TGCAGCTTGCCTGATCTTGA+AGG | - | chr1_2:54990666-54990685 | Msa0077920:intron | 50.0% | |
| GTAACGCGTCCTAACAGATC+TGG | - | chr1_2:54991137-54991156 | Msa0077920:CDS | 50.0% | |
| ! | TTCGACGAGTGCTATTCTGC+GGG | - | chr1_2:54991200-54991219 | Msa0077920:CDS | 50.0% |
| TCACCATTTAGGCAGCAGAC+GGG | - | chr1_2:54991254-54991273 | Msa0077920:intron | 50.0% | |
| ATTCCCGTCTGCTGCCTAAA+TGG | + | chr1_2:54991260-54991279 | None:intergenic | 50.0% | |
| !!! | TCTCGGTCCTGGAAGTGTTT+TGG | - | chr1_2:54991357-54991376 | Msa0077920:CDS | 50.0% |
| !! | TTAAGGTGCCGTAGTCCATG+GGG | + | chr1_2:54991849-54991868 | None:intergenic | 50.0% |
| !! | CTTTAAGGTGCCGTAGTCCA+TGG | + | chr1_2:54991851-54991870 | None:intergenic | 50.0% |
| ! | CATGGACTACGGCACCTTAA+AGG | - | chr1_2:54991849-54991868 | Msa0077920:intron | 50.0% |
| CTGCGACAAACTTGGAGTCA+AGG | - | chr1_2:54992077-54992096 | Msa0077920:intron | 50.0% | |
| CTGGAGAGGATACTCATCGT+TGG | - | chr1_2:54992450-54992469 | Msa0077920:intron | 50.0% | |
| GCCATCAGTGACCTATGTTG+CGG | - | chr1_2:54992655-54992674 | Msa0077920:intron | 50.0% | |
| ATCAGTGACCTATGTTGCGG+CGG | - | chr1_2:54992658-54992677 | Msa0077920:intron | 50.0% | |
| TATTTCCTCCGCCGCAACAT+AGG | + | chr1_2:54992669-54992688 | None:intergenic | 50.0% | |
| GCTAAAGCTCAACCGAGAAG+AGG | + | chr1_2:54992730-54992749 | None:intergenic | 50.0% | |
| CACACTCCTTAGTCCACGTT+TGG | + | chr1_2:54993273-54993292 | None:intergenic | 50.0% | |
| CTTACCTCCCAGTTGAACTC+CGG | - | chr1_2:54993495-54993514 | Msa0077920:intron | 50.0% | |
| TAATCCGGAGTTCAACTGGG+AGG | + | chr1_2:54993502-54993521 | None:intergenic | 50.0% | |
| CTGGTAATCCGGAGTTCAAC+TGG | + | chr1_2:54993506-54993525 | None:intergenic | 50.0% | |
| TTACCAGAGTCCATTTCCCC+TGG | - | chr1_2:54993519-54993538 | Msa0077920:intron | 50.0% | |
| ! | TTTCCAGGGGAAATGGACTC+TGG | + | chr1_2:54993525-54993544 | None:intergenic | 50.0% |
| CCTCTGATTTCCAGGGGAAA+TGG | + | chr1_2:54993532-54993551 | None:intergenic | 50.0% | |
| CCATTTCCCCTGGAAATCAG+AGG | - | chr1_2:54993529-54993548 | Msa0077920:intron | 50.0% | |
| ! | AGAGAGAGGGGTTCTGACTT+TGG | + | chr1_2:54993951-54993970 | None:intergenic | 50.0% |
| CCTGAGCCAGCTGATATGAC+AGG | + | chr1_2:54986414-54986433 | None:intergenic | 55.0% | |
| ! | CCTGTCATATCAGCTGGCTC+AGG | - | chr1_2:54986411-54986430 | Msa0077920:intron | 55.0% |
| ! | CCACGCCTGTGTAATGGAGA+AGG | + | chr1_2:54986443-54986462 | None:intergenic | 55.0% |
| CCTTCTCCATTACACAGGCG+TGG | - | chr1_2:54986440-54986459 | Msa0077920:intron | 55.0% | |
| AAACCCTGTAGGGAGATGGC+AGG | - | chr1_2:54986646-54986665 | Msa0077920:intron | 55.0% | |
| CAACCTGCCATCTCCCTACA+GGG | + | chr1_2:54986652-54986671 | None:intergenic | 55.0% | |
| TCAACCTGCCATCTCCCTAC+AGG | + | chr1_2:54986653-54986672 | None:intergenic | 55.0% | |
| CGAAATGCCGCATGTGCTAC+AGG | - | chr1_2:54986966-54986985 | Msa0077920:intron | 55.0% | |
| TGTCGACCCTGTAGCACATG+CGG | + | chr1_2:54986976-54986995 | None:intergenic | 55.0% | |
| !! | CACGAGTTTGCTGTTCGCCT+AGG | - | chr1_2:54988677-54988696 | Msa0077920:CDS | 55.0% |
| ACCTAGCTGAAGCAGTGCCT+AGG | + | chr1_2:54988697-54988716 | None:intergenic | 55.0% | |
| GTGGGGACAGAACCCATATC+TGG | + | chr1_2:54990053-54990072 | None:intergenic | 55.0% | |
| TAGGCAGCAGACGGGAATGT+AGG | - | chr1_2:54991262-54991281 | Msa0077920:intron | 55.0% | |
| GCCGCAACATAGGTCACTGA+TGG | + | chr1_2:54992659-54992678 | None:intergenic | 55.0% | |
| TGCAAAGCTCCAGGCCTAGA+AGG | - | chr1_2:54993185-54993204 | Msa0077920:intron | 55.0% | |
| TGAGCTGGAAGGTGAACAGC+CGG | - | chr1_2:54994001-54994020 | Msa0077920:intron | 55.0% | |
| GCATGTGCTACAGGGTCGAC+AGG | - | chr1_2:54986975-54986994 | Msa0077920:intron | 60.0% | |
| ! | GCCTAGGCACTGCTTCAGCT+AGG | - | chr1_2:54988693-54988712 | Msa0077920:CDS | 60.0% |
| AGTGACCTATGTTGCGGCGG+AGG | - | chr1_2:54992661-54992680 | Msa0077920:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 54985746 | 54994295 | 54985746 | ID=Msa0077920;Name=Msa0077920 |
| chr1_2 | mRNA | 54985746 | 54994295 | 54985746 | ID=Msa0077920-mRNA-1;Parent=Msa0077920;Name=Msa0077920-mRNA-1;_AED=0.11;_eAED=0.11;_QI=106|0.95|0.95|1|1|1|23|261|836 |
| chr1_2 | exon | 54985746 | 54986108 | 54985746 | ID=Msa0077920-mRNA-1:exon:17170;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54986193 | 54986303 | 54986193 | ID=Msa0077920-mRNA-1:exon:17169;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54987155 | 54987228 | 54987155 | ID=Msa0077920-mRNA-1:exon:17168;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54987331 | 54987400 | 54987331 | ID=Msa0077920-mRNA-1:exon:17167;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54987500 | 54987547 | 54987500 | ID=Msa0077920-mRNA-1:exon:17166;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54988060 | 54988203 | 54988060 | ID=Msa0077920-mRNA-1:exon:17165;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54988290 | 54988382 | 54988290 | ID=Msa0077920-mRNA-1:exon:17164;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54988663 | 54988776 | 54988663 | ID=Msa0077920-mRNA-1:exon:17163;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54988875 | 54989054 | 54988875 | ID=Msa0077920-mRNA-1:exon:17162;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54989146 | 54989226 | 54989146 | ID=Msa0077920-mRNA-1:exon:17161;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54989316 | 54989392 | 54989316 | ID=Msa0077920-mRNA-1:exon:17160;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54989717 | 54989864 | 54989717 | ID=Msa0077920-mRNA-1:exon:17159;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54989959 | 54990043 | 54989959 | ID=Msa0077920-mRNA-1:exon:17158;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54990781 | 54990867 | 54990781 | ID=Msa0077920-mRNA-1:exon:17157;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54991132 | 54991236 | 54991132 | ID=Msa0077920-mRNA-1:exon:17156;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54991327 | 54991481 | 54991327 | ID=Msa0077920-mRNA-1:exon:17155;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54991556 | 54991654 | 54991556 | ID=Msa0077920-mRNA-1:exon:17154;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54991767 | 54991842 | 54991767 | ID=Msa0077920-mRNA-1:exon:17153;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54992592 | 54992663 | 54992592 | ID=Msa0077920-mRNA-1:exon:17152;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54992767 | 54993053 | 54992767 | ID=Msa0077920-mRNA-1:exon:17151;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54993263 | 54993384 | 54993263 | ID=Msa0077920-mRNA-1:exon:17150;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54993559 | 54993641 | 54993559 | ID=Msa0077920-mRNA-1:exon:17149;Parent=Msa0077920-mRNA-1 |
| chr1_2 | exon | 54994092 | 54994295 | 54994092 | ID=Msa0077920-mRNA-1:exon:17148;Parent=Msa0077920-mRNA-1 |
| chr1_2 | five_prime_UTR | 54994190 | 54994295 | 54994190 | ID=Msa0077920-mRNA-1:five_prime_utr;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54994092 | 54994189 | 54994092 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54993559 | 54993641 | 54993559 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54993263 | 54993384 | 54993263 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54992767 | 54993053 | 54992767 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54992592 | 54992663 | 54992592 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54991767 | 54991842 | 54991767 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54991556 | 54991654 | 54991556 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54991327 | 54991481 | 54991327 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54991132 | 54991236 | 54991132 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54990781 | 54990867 | 54990781 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54989959 | 54990043 | 54989959 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54989717 | 54989864 | 54989717 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54989316 | 54989392 | 54989316 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54989146 | 54989226 | 54989146 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54988875 | 54989054 | 54988875 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54988663 | 54988776 | 54988663 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54988290 | 54988382 | 54988290 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54988060 | 54988203 | 54988060 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54987500 | 54987547 | 54987500 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54987331 | 54987400 | 54987331 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54987155 | 54987228 | 54987155 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54986193 | 54986303 | 54986193 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | CDS | 54986007 | 54986108 | 54986007 | ID=Msa0077920-mRNA-1:cds;Parent=Msa0077920-mRNA-1 |
| chr1_2 | three_prime_UTR | 54985746 | 54986006 | 54985746 | ID=Msa0077920-mRNA-1:three_prime_utr;Parent=Msa0077920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
