Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125810 | KEH42792.1 | 88.320 | 899 | 40 | 6 | 1 | 878 | 1 | 855 | 0.0 | 1586 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125810 | sp|Q940Y9|POLL2_ARATH | 63.515 | 751 | 237 | 9 | 148 | 878 | 84 | 817 | 0.0 | 946 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125810 | A0A072VLT4 | 88.320 | 899 | 40 | 6 | 1 | 878 | 1 | 855 | 0.0 | 1586 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000180 | Msa0125810 | 0.809452 | 1.878990e-50 | -8.615850e-47 |
| Msa0025060 | Msa0125810 | 0.801845 | 7.428691e-49 | -8.615850e-47 |
| Msa0025090 | Msa0125810 | 0.813924 | 2.000277e-51 | -8.615850e-47 |
| Msa0026120 | Msa0125810 | 0.818043 | 2.408047e-52 | -8.615850e-47 |
| Msa0030320 | Msa0125810 | 0.910556 | 1.641701e-82 | -8.615850e-47 |
| Msa0046670 | Msa0125810 | 0.807278 | 5.465510e-50 | -8.615850e-47 |
| Msa0055650 | Msa0125810 | 0.801921 | 7.165612e-49 | -8.615850e-47 |
| Msa0060740 | Msa0125810 | 0.831245 | 1.861697e-55 | -8.615850e-47 |
| Msa0077920 | Msa0125810 | 0.967124 | 7.564406e-127 | -8.615850e-47 |
| Msa0086380 | Msa0125810 | 0.815368 | 9.583734e-52 | -8.615850e-47 |
| Msa0106810 | Msa0125810 | 0.810209 | 1.291755e-50 | -8.615850e-47 |
| Msa0112800 | Msa0125810 | 0.821031 | 5.011963e-53 | -8.615850e-47 |
| Msa0125810 | Msa0133190 | 0.814432 | 1.545234e-51 | -8.615850e-47 |
| Msa0125810 | Msa0133250 | 0.804728 | 1.879491e-49 | -8.615850e-47 |
| Msa0125810 | Msa0136520 | 0.803704 | 3.070761e-49 | -8.615850e-47 |
| Msa0125810 | Msa0151810 | 0.842982 | 1.853559e-58 | -8.615850e-47 |
| Msa0125810 | Msa0153290 | 0.824667 | 7.128350e-54 | -8.615850e-47 |
| Msa0125810 | Msa0153890 | 0.804823 | 1.795688e-49 | -8.615850e-47 |
| Msa0125810 | Msa0166580 | 0.827379 | 1.616105e-54 | -8.615850e-47 |
| Msa0125810 | Msa0170450 | 0.929512 | 6.249336e-93 | -8.615850e-47 |
| Msa0125810 | Msa0208400 | 0.812973 | 3.237555e-51 | -8.615850e-47 |
| Msa0125810 | Msa0208560 | 0.809591 | 1.754030e-50 | -8.615850e-47 |
| Msa0125810 | Msa0241580 | 0.814473 | 1.513070e-51 | -8.615850e-47 |
| Msa0125810 | Msa0279490 | 0.817388 | 3.384516e-52 | -8.615850e-47 |
| Msa0125810 | Msa0319090 | 0.819098 | 1.388342e-52 | -8.615850e-47 |
| Msa0125810 | Msa0357090 | 0.826042 | 3.369871e-54 | -8.615850e-47 |
| Msa0125810 | Msa0359230 | 0.805599 | 1.234868e-49 | -8.615850e-47 |
| Msa0125810 | Msa0365360 | 0.812002 | 5.278594e-51 | -8.615850e-47 |
| Msa0125810 | Msa0384220 | -0.806936 | 6.455630e-50 | -8.615850e-47 |
| Msa0125810 | Msa0387180 | -0.811477 | 6.865930e-51 | -8.615850e-47 |
| Msa0125810 | Msa0403340 | 0.819872 | 9.243497e-53 | -8.615850e-47 |
| Msa0125810 | Msa0452010 | 0.809554 | 1.786839e-50 | -8.615850e-47 |
| Msa0125810 | Msa0452680 | 0.818056 | 2.392179e-52 | -8.615850e-47 |
| Msa0125810 | Msa0468050 | -0.814081 | 1.846927e-51 | -8.615850e-47 |
| Msa0125810 | Msa0482840 | 0.814034 | 1.892382e-51 | -8.615850e-47 |
| Msa0125810 | Msa0597300 | 0.807780 | 4.276980e-50 | -8.615850e-47 |
| Msa0125810 | Msa0599250 | 0.802010 | 6.869957e-49 | -8.615850e-47 |
| Msa0125810 | Msa0604130 | 0.828866 | 7.082986e-55 | -8.615850e-47 |
| Msa0125810 | Msa0619460 | 0.807017 | 6.206345e-50 | -8.615850e-47 |
| Msa0125810 | Msa0624890 | 0.804496 | 2.100838e-49 | -8.615850e-47 |
| Msa0125810 | Msa0636750 | 0.834051 | 3.747444e-56 | -8.615850e-47 |
| Msa0125810 | Msa0636760 | 0.843207 | 1.614771e-58 | -8.615850e-47 |
| Msa0125810 | Msa0639880 | 0.828311 | 9.649613e-55 | -8.615850e-47 |
| Msa0125810 | Msa0645460 | 0.828013 | 1.138395e-54 | -8.615850e-47 |
| Msa0125810 | Msa0659590 | 0.807738 | 4.365986e-50 | -8.615850e-47 |
| Msa0125810 | Msa0684910 | 0.828268 | 9.880852e-55 | -8.615850e-47 |
| Msa0125810 | Msa0684920 | 0.836832 | 7.427376e-57 | -8.615850e-47 |
| Msa0125810 | Msa0749900 | 0.805856 | 1.090705e-49 | -8.615850e-47 |
| Msa0125810 | Msa0752540 | 0.809186 | 2.142634e-50 | -8.615850e-47 |
| Msa0125810 | Msa0833080 | 0.802003 | 6.893789e-49 | -8.615850e-47 |
| Msa0125810 | Msa0882340 | 0.806955 | 6.396940e-50 | -8.615850e-47 |
| Msa0125810 | Msa0960270 | 0.803599 | 3.227948e-49 | -8.615850e-47 |
| Msa0125810 | Msa0994660 | 0.809761 | 1.612676e-50 | -8.615850e-47 |
| Msa0125810 | Msa1009020 | 0.807449 | 5.026769e-50 | -8.615850e-47 |
| Msa0125810 | Msa1018720 | 0.839643 | 1.401831e-57 | -8.615850e-47 |
| Msa0125810 | Msa1024120 | 0.804075 | 2.570501e-49 | -8.615850e-47 |
| Msa0125810 | Msa1039650 | -0.810449 | 1.146459e-50 | -8.615850e-47 |
| Msa0125810 | Msa1050320 | 0.801260 | 9.791760e-49 | -8.615850e-47 |
| Msa0125810 | Msa1068040 | -0.800251 | 1.572973e-48 | -8.615850e-47 |
| Msa0125810 | Msa1147190 | 0.827572 | 1.452811e-54 | -8.615850e-47 |
| Msa0125810 | Msa1177360 | 0.804998 | 1.650645e-49 | -8.615850e-47 |
| Msa0125810 | Msa1192790 | 0.832355 | 9.909221e-56 | -8.615850e-47 |
| Msa0125810 | Msa1213460 | 0.801727 | 7.853771e-49 | -8.615850e-47 |
| Msa0125810 | Msa1258600 | -0.812682 | 3.748997e-51 | -8.615850e-47 |
| Msa0125810 | Msa1260510 | 0.803564 | 3.282866e-49 | -8.615850e-47 |
| Msa0125810 | Msa1300360 | 0.800692 | 1.279103e-48 | -8.615850e-47 |
| Msa0125810 | Msa1327400 | 0.834055 | 3.738088e-56 | -8.615850e-47 |
| Msa0125810 | Msa1327420 | 0.834701 | 2.573758e-56 | -8.615850e-47 |
| Msa0125810 | Msa1331730 | 0.809769 | 1.606300e-50 | -8.615850e-47 |
| Msa0125810 | Msa1352550 | 0.822941 | 1.809690e-53 | -8.615850e-47 |
| Msa0125810 | Msa1391600 | 0.812155 | 4.887162e-51 | -8.615850e-47 |
| Msa0125810 | Msa1395700 | 0.804623 | 1.976570e-49 | -8.615850e-47 |
| Msa0125810 | Msa1397550 | 0.804603 | 1.995785e-49 | -8.615850e-47 |
| Msa0125810 | Msa1400940 | -0.815682 | 8.156482e-52 | -8.615850e-47 |
| Msa0125810 | Msa1437650 | 0.810505 | 1.114950e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125810 | MtrunA17_Chr1g0188021 | 88.320 | 899 | 40 | 6 | 1 | 878 | 1 | 855 | 0.0 | 1586 |
| Msa0125810 | MtrunA17_Chr7g0276651 | 25.074 | 674 | 415 | 17 | 242 | 871 | 197 | 824 | 4.46e-52 | 196 |
| Msa0125810 | MtrunA17_Chr2g0277131 | 23.885 | 695 | 433 | 16 | 224 | 871 | 237 | 882 | 1.69e-47 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0125810 | AT5G43745.1 | 63.515 | 751 | 237 | 9 | 148 | 878 | 84 | 817 | 0.0 | 946 |
| Msa0125810 | AT5G02940.1 | 60.875 | 754 | 251 | 10 | 148 | 878 | 81 | 813 | 0.0 | 892 |
| Msa0125810 | AT5G02940.2 | 59.202 | 777 | 250 | 11 | 148 | 878 | 81 | 836 | 0.0 | 880 |
| Msa0125810 | AT5G49960.1 | 23.379 | 663 | 413 | 17 | 252 | 868 | 208 | 821 | 7.32e-47 | 181 |
| Msa0125810 | AT5G49960.3 | 24.009 | 454 | 293 | 9 | 252 | 699 | 208 | 615 | 4.99e-36 | 145 |
| Msa0125810 | AT5G49960.2 | 24.009 | 454 | 293 | 9 | 252 | 699 | 208 | 615 | 6.40e-36 | 145 |
Find 190 sgRNAs with CRISPR-Local
Find 534 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATGCAATTACCAAATTT+TGG | 0.068081 | 1_3:+54457153 | None:intergenic |
| ATTCAAAATGGTTTCCTTTA+AGG | 0.073901 | 1_3:+54459424 | None:intergenic |
| TGTTCAAAATTCAAATATTT+TGG | 0.094861 | 1_3:-54464405 | Msa0125810:CDS |
| TTTCTGAGAGAGCATATTTA+AGG | 0.151867 | 1_3:-54457435 | Msa0125810:CDS |
| GTACCATGACTGAACAATTT+AGG | 0.174550 | 1_3:-54462833 | Msa0125810:CDS |
| AGAAATTGTCGATTCAAAAT+TGG | 0.174597 | 1_3:-54458776 | Msa0125810:CDS |
| GGATCCTCGTAATAAATAAT+TGG | 0.176021 | 1_3:-54465514 | Msa0125810:five_prime_UTR |
| CATTAAATGACAGGATTATT+AGG | 0.177184 | 1_3:-54459615 | Msa0125810:CDS |
| CTAATAATCCTGTCATTTAA+TGG | 0.182682 | 1_3:+54459616 | None:intergenic |
| TCTGACAAAGATTGGCTTCT+TGG | 0.213550 | 1_3:-54459350 | Msa0125810:CDS |
| AATTATGCTGAGAATAATTT+AGG | 0.217375 | 1_3:-54457189 | Msa0125810:three_prime_UTR |
| ACACGTATTGAGCGTGTTAT+TGG | 0.217615 | 1_3:-54462903 | Msa0125810:CDS |
| TTCCTCTGTCCAAATGAAAT+TGG | 0.236075 | 1_3:+54464558 | None:intergenic |
| AGAGCATTGAACAAATAATT+TGG | 0.238735 | 1_3:+54461041 | None:intergenic |
| TTGGCTTTGTTCTTGCAATA+TGG | 0.244797 | 1_3:-54462884 | Msa0125810:CDS |
| CCTTCAACCAATTCCAGATA+TGG | 0.255524 | 1_3:-54461257 | Msa0125810:CDS |
| CATGGACTACGGCACCTTAA+AGG | 0.272237 | 1_3:-54459438 | Msa0125810:CDS |
| TGCAGAATTTCATCATCATT+TGG | 0.285455 | 1_3:+54460433 | None:intergenic |
| TTCATTCAATTCACTATTCT+CGG | 0.286894 | 1_3:+54458471 | None:intergenic |
| GAAATTGTCGATTCAAAATT+GGG | 0.301885 | 1_3:-54458775 | Msa0125810:CDS |
| ATAGTGAATTGAATGAAGTT+TGG | 0.306785 | 1_3:-54458465 | Msa0125810:CDS |
| CTGTTGTATGTGGTCTTTAC+CGG | 0.310048 | 1_3:-54460477 | Msa0125810:CDS |
| TGAAGTCTGAATATTCAAAA+TGG | 0.312714 | 1_3:+54459412 | None:intergenic |
| TACCATGACTGAACAATTTA+GGG | 0.322572 | 1_3:-54462832 | Msa0125810:intron |
| CAAAATTTGGTAATTGCATT+GGG | 0.325134 | 1_3:-54457152 | Msa0125810:three_prime_UTR |
| CCTCGTTAGGTATTGTTCAT+TGG | 0.325696 | 1_3:-54460315 | Msa0125810:intron |
| TGGCTTTGTTCTTGCAATAT+GGG | 0.327052 | 1_3:-54462883 | Msa0125810:CDS |
| AGGGGTTCTGACTTTGGAAT+TGG | 0.327626 | 1_3:+54457280 | None:intergenic |
| CTTGCATATCTGACAAAGAT+TGG | 0.330744 | 1_3:-54459358 | Msa0125810:CDS |
| GATATGCAAGCAATTGAAAA+AGG | 0.332048 | 1_3:+54459371 | None:intergenic |
| CTTCAACAAGTCACATGTTT+GGG | 0.332614 | 1_3:+54461107 | None:intergenic |
| AGTAAAAGAATGCATTCTTT+TGG | 0.333418 | 1_3:+54460007 | None:intergenic |
| GCAGAATTTCATCATCATTT+GGG | 0.346170 | 1_3:+54460434 | None:intergenic |
| ATTAAATGACAGGATTATTA+GGG | 0.346750 | 1_3:-54459614 | Msa0125810:CDS |
| CGAAATGCCGCATGTGCTAC+AGG | 0.351873 | 1_3:-54464330 | Msa0125810:CDS |
| TGCAGCTTGCCTGATCTTGA+AGG | 0.354653 | 1_3:-54460627 | Msa0125810:CDS |
| ATGTTCACTATGTTCTGAAT+TGG | 0.356478 | 1_3:+54464600 | None:intergenic |
| TTAAATGTAAAATATGTAAA+TGG | 0.362555 | 1_3:-54457019 | Msa0125810:three_prime_UTR |
| CCACAAGTTATAACCACAAA+TGG | 0.365342 | 1_3:-54460270 | Msa0125810:CDS |
| GGGGTTCTGACTTTGGAATT+GGG | 0.367709 | 1_3:+54457281 | None:intergenic |
| TCTCGGTCCTGGAAGTGTTT+TGG | 0.368444 | 1_3:-54459936 | Msa0125810:intron |
| CCAAAATTTGGTAATTGCAT+TGG | 0.369364 | 1_3:-54457153 | Msa0125810:three_prime_UTR |
| ACTTCAACAAGTCACATGTT+TGG | 0.378442 | 1_3:+54461106 | None:intergenic |
| ATGTGAGCACCAATTTCATT+TGG | 0.382678 | 1_3:-54464567 | Msa0125810:CDS |
| AGAATGTTCGAGTTTCTCAT+AGG | 0.392413 | 1_3:-54459564 | Msa0125810:CDS |
| CTTTAAGGTGCCGTAGTCCA+TGG | 0.393693 | 1_3:+54459439 | None:intergenic |
| AGAGAGAGGGGTTCTGACTT+TGG | 0.394255 | 1_3:+54457274 | None:intergenic |
| GTGGAGACAGAACCCATATC+TGG | 0.395837 | 1_3:+54461244 | None:intergenic |
| CTGACACATACAAAGTTTGT+TGG | 0.400547 | 1_3:-54464254 | Msa0125810:CDS |
| AAACATACCAAAACACTTCC+AGG | 0.411264 | 1_3:+54459929 | None:intergenic |
| ATTGATATATGTAGGTTTCA+AGG | 0.414000 | 1_3:-54461131 | Msa0125810:intron |
| ATAATTATACTGCCAGCAAA+AGG | 0.414426 | 1_3:-54462064 | Msa0125810:CDS |
| TATGTGGTCTTTACCGGAAT+GGG | 0.416645 | 1_3:-54460471 | Msa0125810:CDS |
| ACCGATCATATCATTATTTG+TGG | 0.426209 | 1_3:-54462688 | Msa0125810:CDS |
| GATCCTCGTAATAAATAATT+GGG | 0.428939 | 1_3:-54465513 | Msa0125810:five_prime_UTR |
| CCATTTGTGGTTATAACTTG+TGG | 0.429550 | 1_3:+54460270 | None:intergenic |
| TTCCAAGAAAACAGATTGAT+AGG | 0.432088 | 1_3:-54462462 | Msa0125810:CDS |
| TTGGAAGATCAGACATAAGA+AGG | 0.434726 | 1_3:+54462479 | None:intergenic |
| TTGGATGCAACATCTTCTAC+TGG | 0.434987 | 1_3:+54461060 | None:intergenic |
| TTGAATCATTTCTACAACAT+CGG | 0.436367 | 1_3:+54459973 | None:intergenic |
| GTTCTTCTTCACATAACCTA+TGG | 0.436383 | 1_3:+54457402 | None:intergenic |
| TCTCTCCTTCTTTCATGTAA+AGG | 0.442404 | 1_3:+54457476 | None:intergenic |
| AAGTGGCTTAGGTGTATTCA+AGG | 0.445370 | 1_3:+54464142 | None:intergenic |
| ACAGAACCCATATCTGGAAT+TGG | 0.446217 | 1_3:+54461250 | None:intergenic |
| ACGTCTAATTTAAGTGGCTT+AGG | 0.446496 | 1_3:+54464131 | None:intergenic |
| TGAATCATTTCTACAACATC+GGG | 0.447283 | 1_3:+54459974 | None:intergenic |
| ACACCAACAACAAGAATTCC+AGG | 0.447705 | 1_3:-54465370 | Msa0125810:intron |
| CTTCAACCAATTCCAGATAT+GGG | 0.456773 | 1_3:-54461256 | Msa0125810:CDS |
| CGAATACCACGCCTGTGTAA+TGG | 0.458509 | 1_3:+54464850 | None:intergenic |
| GGAAAATAATAGTAGCTCTC+AGG | 0.460845 | 1_3:-54464539 | Msa0125810:intron |
| TATTCAGACTTCATTGAAGA+AGG | 0.463327 | 1_3:-54459402 | Msa0125810:CDS |
| TTTAAGGTGCCGTAGTCCAT+GGG | 0.463795 | 1_3:+54459440 | None:intergenic |
| TTGTGCCCTGTCATATCAGC+TGG | 0.468222 | 1_3:-54464891 | Msa0125810:CDS |
| AGAGTAATATGCAAAGGCTC+AGG | 0.468992 | 1_3:-54462738 | Msa0125810:CDS |
| GACTTGTTGAAGTCAATCTC+GGG | 0.469582 | 1_3:-54461096 | Msa0125810:CDS |
| CCATATCTGGAATTGGTTGA+AGG | 0.469691 | 1_3:+54461257 | None:intergenic |
| TATGTCATTCCTTCAAGATC+AGG | 0.471383 | 1_3:+54460618 | None:intergenic |
| TTCTGTCTCCACAATAGTTG+AGG | 0.475729 | 1_3:-54461233 | Msa0125810:intron |
| TTATTTCAGGCTGTTGTATG+TGG | 0.479952 | 1_3:-54460487 | Msa0125810:intron |
| GTACCTGGAATTCTTGTTGT+TGG | 0.483183 | 1_3:+54465367 | None:intergenic |
| TGCTCTCACTTTGCTCCTAG+TGG | 0.484536 | 1_3:+54465477 | None:intergenic |
| GGCTTTGTTCTTGCAATATG+GGG | 0.488366 | 1_3:-54462882 | Msa0125810:CDS |
| ATTAGCCTTTACATGAAAGA+AGG | 0.489800 | 1_3:-54457481 | Msa0125810:CDS |
| AATGACCTTGAGCAGTTACA+AGG | 0.490244 | 1_3:+54458593 | None:intergenic |
| TATGAGAACTATCTCGGTCC+TGG | 0.491562 | 1_3:-54459947 | Msa0125810:CDS |
| CAGGAACAATAAACAATCAC+TGG | 0.493123 | 1_3:-54463100 | Msa0125810:CDS |
| GACTCTTGACGGAACAAGCT+TGG | 0.493689 | 1_3:-54464186 | Msa0125810:CDS |
| TTTAGCTGCTTTAATATGAA+AGG | 0.497921 | 1_3:+54462649 | None:intergenic |
| GTGGCTTATTAGTATTCTGA+AGG | 0.498207 | 1_3:+54460289 | None:intergenic |
| CAGAGACGCCATTAAATGAC+AGG | 0.499203 | 1_3:-54459624 | Msa0125810:CDS |
| GACAAAGATTGGCTTCTTGG+AGG | 0.500058 | 1_3:-54459347 | Msa0125810:CDS |
| CCTGTCATATCAGCTGGCTC+AGG | 0.500403 | 1_3:-54464885 | Msa0125810:CDS |
| TATTTCCTCCGCCGCAACAT+AGG | 0.501247 | 1_3:+54458621 | None:intergenic |
| ATTGATAGTCATATCTGAGC+TGG | 0.501789 | 1_3:-54457236 | Msa0125810:CDS |
| TCTGAATTGGAATTAAAAGC+TGG | 0.502397 | 1_3:+54464613 | None:intergenic |
| ACATGCGCACCTGTCTTCCA+TGG | 0.503067 | 1_3:-54465427 | Msa0125810:CDS |
| TATGTGCCTCAGACTCTTGA+CGG | 0.505688 | 1_3:-54464197 | Msa0125810:CDS |
| TAATTATACTGCCAGCAAAA+GGG | 0.507131 | 1_3:-54462063 | Msa0125810:CDS |
| AAGGACTTATAAAGATCTAC+AGG | 0.509152 | 1_3:-54461011 | Msa0125810:CDS |
| GTTTCTTGTTCTTCAAGCTA+AGG | 0.510347 | 1_3:-54463868 | Msa0125810:intron |
| CCTGAGCCAGCTGATATGAC+AGG | 0.511177 | 1_3:+54464885 | None:intergenic |
| TGACTTGTTGAAGTCAATCT+CGG | 0.511323 | 1_3:-54461097 | Msa0125810:CDS |
| CATCTAATATCATGAAAAGA+AGG | 0.511608 | 1_3:+54464101 | None:intergenic |
| AATTATTTGTTCAATGCTCT+CGG | 0.514496 | 1_3:-54461038 | Msa0125810:CDS |
| ATAACCACAAATGGGAAAGA+AGG | 0.514985 | 1_3:-54460261 | Msa0125810:CDS |
| GTAACGCGTCCTAACAGATC+TGG | 0.516914 | 1_3:-54460156 | Msa0125810:CDS |
| AAGGAGACGTCTAATTTAAG+TGG | 0.517014 | 1_3:+54464125 | None:intergenic |
| AGTGACCTATGTTGCGGCGG+AGG | 0.517374 | 1_3:-54458626 | Msa0125810:CDS |
| CACAAGTTATAACCACAAAT+GGG | 0.517797 | 1_3:-54460269 | Msa0125810:CDS |
| GCATGTGCTACAGGGTCGAC+AGG | 0.519355 | 1_3:-54464321 | Msa0125810:CDS |
| GTTCAATGCTCTCGGCAGAA+AGG | 0.520032 | 1_3:-54461030 | Msa0125810:CDS |
| TCAGAAAGCTCGGAAAATGA+AGG | 0.520785 | 1_3:+54457451 | None:intergenic |
| ATCTTGAAGGAATGACATAT+AGG | 0.524524 | 1_3:-54460614 | Msa0125810:CDS |
| GCACATATCGAACTATTGCT+TGG | 0.525302 | 1_3:+54464213 | None:intergenic |
| GTCAGTCAATTCAAGAGAGA+GGG | 0.525834 | 1_3:+54457261 | None:intergenic |
| TCTTACTTTACTCAATTCGA+TGG | 0.529133 | 1_3:+54460191 | None:intergenic |
| CAGCATAATTACAAAATGAC+CGG | 0.533687 | 1_3:+54457202 | None:intergenic |
| AATGGGAAAGAAGGAAAAGA+TGG | 0.536238 | 1_3:-54460252 | Msa0125810:CDS |
| AATTATACTGCCAGCAAAAG+GGG | 0.536630 | 1_3:-54462062 | Msa0125810:CDS |
| CAAGAGTATGAGAACTATCT+CGG | 0.537222 | 1_3:-54459953 | Msa0125810:CDS |
| TACCCTAAATTGTTCAGTCA+TGG | 0.537267 | 1_3:+54462830 | None:intergenic |
| CACGAGTTTGCTGTTCGCCT+AGG | 0.538803 | 1_3:-54462619 | Msa0125810:CDS |
| TTGAGCCTTGTAACTGCTCA+AGG | 0.539272 | 1_3:-54458598 | Msa0125810:intron |
| ATATGCTCTCTCAGAAAGCT+CGG | 0.542579 | 1_3:+54457441 | None:intergenic |
| ATCACCATTTAGGCAGCAGA+CGG | 0.544517 | 1_3:-54460040 | Msa0125810:intron |
| CCGATCATATCATTATTTGT+GGG | 0.545928 | 1_3:-54462687 | Msa0125810:CDS |
| GTGGAAGTGAGTGAGATTCA+TGG | 0.547458 | 1_3:+54465448 | None:intergenic |
| ATTATTAGGGAAAACATCGT+TGG | 0.550733 | 1_3:-54459601 | Msa0125810:CDS |
| TACTGCCAGCAAAAGGGGAT+CGG | 0.554950 | 1_3:-54462057 | Msa0125810:intron |
| ACCTTGGAACCAGATCTGTT+AGG | 0.555505 | 1_3:+54460147 | None:intergenic |
| ATGTAAACCCTGTAGGGAGA+TGG | 0.559911 | 1_3:-54464654 | Msa0125810:intron |
| CATATCTGGAATTGGTTGAA+GGG | 0.560971 | 1_3:+54461258 | None:intergenic |
| GTAACAAACCTCAACTATTG+TGG | 0.563433 | 1_3:+54461225 | None:intergenic |
| GTATGTGGTCTTTACCGGAA+TGG | 0.565150 | 1_3:-54460472 | Msa0125810:CDS |
| ATGGAAGACAGGTGCGCATG+TGG | 0.565569 | 1_3:+54465429 | None:intergenic |
| TATGTGTGCCTTGGAATCCA+TGG | 0.565777 | 1_3:+54465410 | None:intergenic |
| TTAAGGAGAGAAGTAGCCAT+AGG | 0.566286 | 1_3:-54457418 | Msa0125810:CDS |
| ATTGGAAACCCCATGGACTA+CGG | 0.567157 | 1_3:-54459449 | Msa0125810:CDS |
| CCTTGGAATCCATGGAAGAC+AGG | 0.567252 | 1_3:+54465418 | None:intergenic |
| GAATGTTCGAGTTTCTCATA+GGG | 0.567985 | 1_3:-54459563 | Msa0125810:intron |
| CACCAATTTCATTTGGACAG+AGG | 0.569663 | 1_3:-54464560 | Msa0125810:CDS |
| GGGAGCACAAATGCAAGTCA+TGG | 0.570238 | 1_3:-54462713 | Msa0125810:CDS |
| TAGGCAGCAGACGGGAATGT+AGG | 0.574180 | 1_3:-54460031 | Msa0125810:CDS |
| CCTGTCTTCCATGGATTCCA+AGG | 0.574669 | 1_3:-54465418 | Msa0125810:CDS |
| GATGAGCAGTATGTGTGCCT+TGG | 0.581395 | 1_3:+54465401 | None:intergenic |
| TGAGCTGGAAGGGGAACAGC+CGG | 0.581514 | 1_3:-54457221 | Msa0125810:CDS |
| AGTCATATCTGAGCTGGAAG+GGG | 0.584506 | 1_3:-54457230 | Msa0125810:CDS |
| TCACCATTTAGGCAGCAGAC+GGG | 0.585510 | 1_3:-54460039 | Msa0125810:intron |
| CGCAACAGAGTAATATGCAA+AGG | 0.588880 | 1_3:-54462744 | Msa0125810:intron |
| GAATTTCATCATCATTTGGG+TGG | 0.590474 | 1_3:+54460437 | None:intergenic |
| AATATCATGAAAAGAAGGCA+AGG | 0.592571 | 1_3:+54464106 | None:intergenic |
| TAGTCATATCTGAGCTGGAA+GGG | 0.593083 | 1_3:-54457231 | Msa0125810:CDS |
| TGCAACTCACCTTCAGTGTG+TGG | 0.593529 | 1_3:+54464826 | None:intergenic |
| TCCTAACAGATCTGGTTCCA+AGG | 0.594226 | 1_3:-54460148 | Msa0125810:intron |
| GAGTAATATGCAAAGGCTCA+GGG | 0.597688 | 1_3:-54462737 | Msa0125810:CDS |
| CCCACAAATAATGATATGAT+CGG | 0.599046 | 1_3:+54462687 | None:intergenic |
| AGTCAGTCAATTCAAGAGAG+AGG | 0.599157 | 1_3:+54457260 | None:intergenic |
| ACCTAGCTGAAGCAGTGCCT+AGG | 0.600093 | 1_3:+54462602 | None:intergenic |
| AGCGTCGATACCTCTTGCTA+AGG | 0.600603 | 1_3:+54462398 | None:intergenic |
| GCCGCAACATAGGTCACTGA+TGG | 0.603508 | 1_3:+54458631 | None:intergenic |
| CCACGCCTGTGTAATGGAGA+AGG | 0.603866 | 1_3:+54464856 | None:intergenic |
| GGGTGATGAAATATATGTGA+AGG | 0.604673 | 1_3:-54458422 | Msa0125810:intron |
| GCCATCAGTGACCTATGTTG+CGG | 0.607641 | 1_3:-54458632 | Msa0125810:CDS |
| TGTCGACCCTGTAGCACATG+CGG | 0.609104 | 1_3:+54464323 | None:intergenic |
| TGGCTTATTAGTATTCTGAA+GGG | 0.612456 | 1_3:+54460290 | None:intergenic |
| AAAATTTGGTAATTGCATTG+GGG | 0.616593 | 1_3:-54457151 | Msa0125810:three_prime_UTR |
| CTTGTTCCGTCAAGAGTCTG+AGG | 0.618450 | 1_3:+54464191 | None:intergenic |
| GAAAGACATACTAGATGCAG+AGG | 0.618766 | 1_3:-54458443 | Msa0125810:CDS |
| ATATTGATCTCCTTAGCAAG+AGG | 0.619450 | 1_3:-54462408 | Msa0125810:intron |
| ATCAGTGACCTATGTTGCGG+CGG | 0.620787 | 1_3:-54458629 | Msa0125810:CDS |
| AAATTGTCGATTCAAAATTG+GGG | 0.621368 | 1_3:-54458774 | Msa0125810:CDS |
| AAACCCTGTAGGGAGATGGC+AGG | 0.622638 | 1_3:-54464650 | Msa0125810:intron |
| GAAATGCCGCATGTGCTACA+GGG | 0.622952 | 1_3:-54464329 | Msa0125810:CDS |
| ATAGTCATATCTGAGCTGGA+AGG | 0.628655 | 1_3:-54457232 | Msa0125810:CDS |
| ACTATAGATTGGAAACCCCA+TGG | 0.633543 | 1_3:-54459456 | Msa0125810:intron |
| CCTTCTCCATTACACAGGCG+TGG | 0.637605 | 1_3:-54464856 | Msa0125810:CDS |
| TCAGTCAATTCAAGAGAGAG+GGG | 0.638151 | 1_3:+54457262 | None:intergenic |
| AAGTGAGTGAGATTCATGGC+TGG | 0.639373 | 1_3:+54465452 | None:intergenic |
| GGTATTCGACCACACACTGA+AGG | 0.641674 | 1_3:-54464835 | Msa0125810:intron |
| CTTCACCTTCTCCATTACAC+AGG | 0.646584 | 1_3:-54464861 | Msa0125810:CDS |
| CTGAGCCAGCTGATATGACA+GGG | 0.647653 | 1_3:+54464886 | None:intergenic |
| ATAACACGCTCAATACGTGT+TGG | 0.648660 | 1_3:+54462906 | None:intergenic |
| TCTCCCAATTATTTATTACG+AGG | 0.650069 | 1_3:+54465510 | None:intergenic |
| GCCTAGGCACTGCTTCAGCT+AGG | 0.650589 | 1_3:-54462603 | Msa0125810:intron |
| ATATTAGATGGAGCTTAGCG+CGG | 0.663174 | 1_3:-54464088 | Msa0125810:CDS |
| AATATGCAAAGGCTCAGGGA+GGG | 0.673017 | 1_3:-54462733 | Msa0125810:CDS |
| TAATATGCAAAGGCTCAGGG+AGG | 0.678347 | 1_3:-54462734 | Msa0125810:CDS |
| TTAAGGTGCCGTAGTCCATG+GGG | 0.678704 | 1_3:+54459441 | None:intergenic |
| ACTTGTTGAAGTCAATCTCG+GGG | 0.695230 | 1_3:-54461095 | Msa0125810:CDS |
| AAAGACATACTAGATGCAGA+GGG | 0.713150 | 1_3:-54458442 | Msa0125810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGATATAAATAATTTCT+TGG | + | chr1_3:54459164-54459183 | None:intergenic | 10.0% |
| !! | CATATGATTAATTTAATTAA+TGG | + | chr1_3:54460253-54460272 | None:intergenic | 10.0% |
| !!! | ATAAATTATTCATTCAATTT+TGG | - | chr1_3:54461657-54461676 | Msa0125810:intron | 10.0% |
| !! | TAAAAAAAAATATTAAACAC+CGG | + | chr1_3:54461808-54461827 | None:intergenic | 10.0% |
| !! | CATTAATGTAAAATTATAAA+TGG | + | chr1_3:54461961-54461980 | None:intergenic | 10.0% |
| !!! | ATATTTTTATTATTGTTTTG+CGG | + | chr1_3:54462667-54462686 | None:intergenic | 10.0% |
| !!! | TAATATTTTTTTGTTATGAT+AGG | - | chr1_3:54463298-54463317 | Msa0125810:intron | 10.0% |
| !!! | TTTATTTTTTCTTATTATAC+AGG | - | chr1_3:54464979-54464998 | Msa0125810:intron | 10.0% |
| !! | TTAAATGTAAAATATGTAAA+TGG | - | chr1_3:54465466-54465485 | Msa0125810:exon | 10.0% |
| !!! | TTTTGAACATAAAACATTAA+AGG | + | chr1_3:54458069-54458088 | None:intergenic | 15.0% |
| !!! | TGTTCAAAATTCAAATATTT+TGG | - | chr1_3:54458080-54458099 | Msa0125810:intron | 15.0% |
| !! | ATTATTAAAATTGAATCTAG+TGG | - | chr1_3:54459188-54459207 | Msa0125810:intron | 15.0% |
| !!! | TTATATATGTTTGTTAATCT+GGG | - | chr1_3:54459346-54459365 | Msa0125810:CDS | 15.0% |
| !!! | TATATTTTTTTACTTTGCTT+AGG | - | chr1_3:54460161-54460180 | Msa0125810:CDS | 15.0% |
| !! | ATGTATATTTGAATAGAATA+AGG | - | chr1_3:54460202-54460221 | Msa0125810:CDS | 15.0% |
| !! | TGTATATTTGAATAGAATAA+GGG | - | chr1_3:54460203-54460222 | Msa0125810:CDS | 15.0% |
| !!! | AAATGATTTTGTTAAACTAA+GGG | + | chr1_3:54460371-54460390 | None:intergenic | 15.0% |
| !! | CAATTAAGAAAATTTCAAAT+AGG | + | chr1_3:54461338-54461357 | None:intergenic | 15.0% |
| !!! | TTTTCTTAATTGATATATGT+AGG | - | chr1_3:54461346-54461365 | Msa0125810:intron | 15.0% |
| !! | CTATATATTGATATTATTTC+AGG | - | chr1_3:54461985-54462004 | Msa0125810:intron | 15.0% |
| !! | AATCTCTTTGATAAATTATA+TGG | + | chr1_3:54464272-54464291 | None:intergenic | 15.0% |
| !! | CATTCCAAAAAATTTATATA+TGG | - | chr1_3:54464649-54464668 | Msa0125810:intron | 15.0% |
| !!! | CAAACCATATATAAATTTTT+TGG | + | chr1_3:54464656-54464675 | None:intergenic | 15.0% |
| !! | ATAAATCATGTTCAAATTTA+TGG | + | chr1_3:54464826-54464845 | None:intergenic | 15.0% |
| !!! | TTTTTTCTTTCAGAATAAAT+TGG | - | chr1_3:54465430-54465449 | Msa0125810:CDS | 15.0% |
| !!! | AAAGTTGTTAACATTTTATT+TGG | - | chr1_3:54465538-54465557 | Msa0125810:five_prime_UTR | 15.0% |
| !! | TCATCATCTGTTAAAAAATT+TGG | + | chr1_3:54457364-54457383 | None:intergenic | 20.0% |
| !!! | AAGTTTATTGTTGTTTTCAA+TGG | - | chr1_3:54457423-54457442 | Msa0125810:CDS | 20.0% |
| !!! | AAAATGTACAAAAGTATTGA+TGG | - | chr1_3:54457995-54458014 | Msa0125810:intron | 20.0% |
| !! | AGAAAATTCCATTTACAATA+AGG | + | chr1_3:54458699-54458718 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTCCTTTTTGTCA+AGG | + | chr1_3:54458736-54458755 | None:intergenic | 20.0% |
| !!! | ATTTTTTCAGACAAATATCT+TGG | + | chr1_3:54458845-54458864 | None:intergenic | 20.0% |
| !! | AAATAATTTCTTGGAAACAT+GGG | + | chr1_3:54459155-54459174 | None:intergenic | 20.0% |
| !! | TAAATAATTTCTTGGAAACA+TGG | + | chr1_3:54459156-54459175 | None:intergenic | 20.0% |
| !!! | CTTATATATGTTTGTTAATC+TGG | - | chr1_3:54459345-54459364 | Msa0125810:CDS | 20.0% |
| !!! | TACTCATTTAAAAGTATGTT+CGG | - | chr1_3:54459451-54459470 | Msa0125810:CDS | 20.0% |
| !!! | TTATTTTGGATTTCATAATC+TGG | - | chr1_3:54459475-54459494 | Msa0125810:intron | 20.0% |
| !! | AGAAATATATTGTTTAAGGA+AGG | + | chr1_3:54459698-54459717 | None:intergenic | 20.0% |
| !! | CTAGGTAAATATTTCATAAA+AGG | - | chr1_3:54459900-54459919 | Msa0125810:intron | 20.0% |
| !!! | AATAGTATTTTTACAAAAGC+CGG | + | chr1_3:54460137-54460156 | None:intergenic | 20.0% |
| !!! | CAAATGATTTTGTTAAACTA+AGG | + | chr1_3:54460372-54460391 | None:intergenic | 20.0% |
| !! | ATTAAATTAAATCGTACTCT+TGG | + | chr1_3:54460805-54460824 | None:intergenic | 20.0% |
| !! | TTTCATACCTAACAATATAA+AGG | + | chr1_3:54461177-54461196 | None:intergenic | 20.0% |
| !! | TAATAGAAAATCTAGGAAAT+AGG | + | chr1_3:54461565-54461584 | None:intergenic | 20.0% |
| !!! | ATTTCCTAGATTTTCTATTA+TGG | - | chr1_3:54461565-54461584 | Msa0125810:intron | 20.0% |
| !! | AATACCATAATAGAAAATCT+AGG | + | chr1_3:54461572-54461591 | None:intergenic | 20.0% |
| !!! | AAATCAATACAAGTTTTAAC+TGG | + | chr1_3:54461757-54461776 | None:intergenic | 20.0% |
| !! | TTTAGAAAATCCAAGATAAA+AGG | + | chr1_3:54462141-54462160 | None:intergenic | 20.0% |
| !! | TTGGAGATTATGTAATAATA+TGG | - | chr1_3:54462805-54462824 | Msa0125810:intron | 20.0% |
| !! | ATTAAATGACAGGATTATTA+GGG | - | chr1_3:54462871-54462890 | Msa0125810:CDS | 20.0% |
| !! | CAAAAAATTGTAACTGAAAA+TGG | - | chr1_3:54463171-54463190 | Msa0125810:intron | 20.0% |
| !! | AAGTTAGTAATATTTCCAAA+AGG | + | chr1_3:54463331-54463350 | None:intergenic | 20.0% |
| !! | TACTAACTTCTCTAAATATA+TGG | - | chr1_3:54463342-54463361 | Msa0125810:intron | 20.0% |
| !! | ATGTAGTTGAAATTTGAAAA+GGG | + | chr1_3:54463405-54463424 | None:intergenic | 20.0% |
| !! | AATGTAGTTGAAATTTGAAA+AGG | + | chr1_3:54463406-54463425 | None:intergenic | 20.0% |
| !! | GAAAAATATGTGACATAATT+AGG | + | chr1_3:54463452-54463471 | None:intergenic | 20.0% |
| !! | TCTATCATAGTATTTACTAT+AGG | + | chr1_3:54463480-54463499 | None:intergenic | 20.0% |
| !!! | AAATAAGTCTTGACTATTTT+GGG | + | chr1_3:54464299-54464318 | None:intergenic | 20.0% |
| !! | AATTATGCTGAGAATAATTT+AGG | - | chr1_3:54465296-54465315 | Msa0125810:intron | 20.0% |
| ! | GATCCTCGTAATAAATAATT+GGG | - | chr1_3:54456972-54456991 | Msa0125810:three_prime_UTR | 25.0% |
| ! | ATCATTTCCATAATTGAGTT+GGG | + | chr1_3:54457217-54457236 | None:intergenic | 25.0% |
| ! | TATCATTTCCATAATTGAGT+TGG | + | chr1_3:54457218-54457237 | None:intergenic | 25.0% |
| !! | AGACATGGTTCAAATTTTAT+CGG | - | chr1_3:54457282-54457301 | Msa0125810:CDS | 25.0% |
| ! | TTAATTAATGTAAACCCTGT+AGG | - | chr1_3:54457824-54457843 | Msa0125810:intron | 25.0% |
| ! | TAATTAATGTAAACCCTGTA+GGG | - | chr1_3:54457825-54457844 | Msa0125810:intron | 25.0% |
| !!! | ATTCAAATATTTTGGAGCAA+TGG | - | chr1_3:54458088-54458107 | Msa0125810:intron | 25.0% |
| ! | CATCTAATATCATGAAAAGA+AGG | + | chr1_3:54458387-54458406 | None:intergenic | 25.0% |
| !! | CTTCTTTTCATGATATTAGA+TGG | - | chr1_3:54458385-54458404 | Msa0125810:intron | 25.0% |
| ! | TAATCACTTCATTGCTTATT+TGG | - | chr1_3:54458470-54458489 | Msa0125810:CDS | 25.0% |
| ! | ATTAGAACTTATCTATCTAC+TGG | - | chr1_3:54458493-54458512 | Msa0125810:intron | 25.0% |
| !!! | GTTAACCTATTCTTATTTTG+TGG | - | chr1_3:54458670-54458689 | Msa0125810:intron | 25.0% |
| ! | TTGATATCATATACAACTTG+TGG | - | chr1_3:54459060-54459079 | Msa0125810:intron | 25.0% |
| ! | GTCTATATAAAACAACATCT+TGG | + | chr1_3:54459128-54459147 | None:intergenic | 25.0% |
| ! | CAGAAAAGAAAATAAAGAAG+GGG | + | chr1_3:54459221-54459240 | None:intergenic | 25.0% |
| ! | GCAGAAAAGAAAATAAAGAA+GGG | + | chr1_3:54459222-54459241 | None:intergenic | 25.0% |
| ! | AGCAGAAAAGAAAATAAAGA+AGG | + | chr1_3:54459223-54459242 | None:intergenic | 25.0% |
| !!! | CTTTATTTTCTTTTCTGCTT+TGG | - | chr1_3:54459224-54459243 | Msa0125810:intron | 25.0% |
| ! | GTTCCTGGATAATTTAATAA+TGG | + | chr1_3:54459372-54459391 | None:intergenic | 25.0% |
| !! | AAAGTATGTTCGGTTTATTT+TGG | - | chr1_3:54459461-54459480 | Msa0125810:intron | 25.0% |
| ! | GTGTTTATAAGCAATTTGAA+AGG | + | chr1_3:54459515-54459534 | None:intergenic | 25.0% |
| ! | GCACAGAAATATATTGTTTA+AGG | + | chr1_3:54459702-54459721 | None:intergenic | 25.0% |
| !! | TTTAGCTGCTTTAATATGAA+AGG | + | chr1_3:54459839-54459858 | None:intergenic | 25.0% |
| ! | AAGCAGAAATTTCAATTATG+AGG | + | chr1_3:54460338-54460357 | None:intergenic | 25.0% |
| ! | TGATCTACTTAAATTGCTAA+TGG | - | chr1_3:54460458-54460477 | Msa0125810:CDS | 25.0% |
| ! | ACTTAAATTGCTAATGGTAT+AGG | - | chr1_3:54460464-54460483 | Msa0125810:CDS | 25.0% |
| !! | TTTATTATTGAAAGTGTGTG+AGG | - | chr1_3:54460535-54460554 | Msa0125810:intron | 25.0% |
| !! | TTATTATTGAAAGTGTGTGA+GGG | - | chr1_3:54460536-54460555 | Msa0125810:intron | 25.0% |
| !!! | TGTTATGGAGATTTTAGAAT+TGG | - | chr1_3:54460660-54460679 | Msa0125810:intron | 25.0% |
| !!! | GTTATGGAGATTTTAGAATT+GGG | - | chr1_3:54460661-54460680 | Msa0125810:intron | 25.0% |
| !!! | TTATGGAGATTTTAGAATTG+GGG | - | chr1_3:54460662-54460681 | Msa0125810:intron | 25.0% |
| ! | GAATTACTAATCTGAATGAT+TGG | - | chr1_3:54460721-54460740 | Msa0125810:intron | 25.0% |
| ! | TACATATTAACTCATACTCA+TGG | + | chr1_3:54460750-54460769 | None:intergenic | 25.0% |
| ! | ATGAGTATGAGTTAATATGT+AGG | - | chr1_3:54460749-54460768 | Msa0125810:intron | 25.0% |
| ! | AGATCATTAGTCCTAATTAT+TGG | - | chr1_3:54460838-54460857 | Msa0125810:intron | 25.0% |
| ! | GATCATTAGTCCTAATTATT+GGG | - | chr1_3:54460839-54460858 | Msa0125810:intron | 25.0% |
| ! | CTAAAAAGTAATAGAAGCTA+AGG | + | chr1_3:54460906-54460925 | None:intergenic | 25.0% |
| ! | ATTCTGAATTCACTTTGATA+AGG | - | chr1_3:54461135-54461154 | Msa0125810:intron | 25.0% |
| ! | TTCAGATCCTTTATATTGTT+AGG | - | chr1_3:54461167-54461186 | Msa0125810:intron | 25.0% |
| ! | ATTGATATATGTAGGTTTCA+AGG | - | chr1_3:54461354-54461373 | Msa0125810:intron | 25.0% |
| !!! | AGAGCATTGAACAAATAATT+TGG | + | chr1_3:54461447-54461466 | None:intergenic | 25.0% |
| ! | AATTATTTGTTCAATGCTCT+CGG | - | chr1_3:54461447-54461466 | Msa0125810:intron | 25.0% |
| !!! | TATTCATTCAATTTTGGTAC+CGG | - | chr1_3:54461663-54461682 | Msa0125810:intron | 25.0% |
| !!! | TAAATTCATTTTTCCTCGTT+AGG | - | chr1_3:54462157-54462176 | Msa0125810:intron | 25.0% |
| ! | TAAATGGTGATAAGTGATAA+AGG | + | chr1_3:54462436-54462455 | None:intergenic | 25.0% |
| ! | TTTATCACTTATCACCATTT+AGG | - | chr1_3:54462435-54462454 | Msa0125810:CDS | 25.0% |
| !! | AGTAAAAGAATGCATTCTTT+TGG | + | chr1_3:54462481-54462500 | None:intergenic | 25.0% |
| !! | AAAGAATGCATTCTTTTACT+TGG | - | chr1_3:54462481-54462500 | Msa0125810:CDS | 25.0% |
| !! | AAGAATGCATTCTTTTACTT+GGG | - | chr1_3:54462482-54462501 | Msa0125810:CDS | 25.0% |
| ! | TTGAATCATTTCTACAACAT+CGG | + | chr1_3:54462515-54462534 | None:intergenic | 25.0% |
| !! | TTTGGTATGTTTATGTGTTT+TGG | - | chr1_3:54462567-54462586 | Msa0125810:intron | 25.0% |
| ! | AAACTTCCTGCATATTATTA+TGG | + | chr1_3:54462838-54462857 | None:intergenic | 25.0% |
| !! | CTAATAATCCTGTCATTTAA+TGG | + | chr1_3:54462872-54462891 | None:intergenic | 25.0% |
| ! | CATTAAATGACAGGATTATT+AGG | - | chr1_3:54462870-54462889 | Msa0125810:CDS | 25.0% |
| !! | TTCTTTTGGATACTATAGAT+TGG | - | chr1_3:54463018-54463037 | Msa0125810:intron | 25.0% |
| ! | ATTCAAAATGGTTTCCTTTA+AGG | + | chr1_3:54463064-54463083 | None:intergenic | 25.0% |
| ! | TGAAGTCTGAATATTCAAAA+TGG | + | chr1_3:54463076-54463095 | None:intergenic | 25.0% |
| !!! | ATGATAGGATTTTTTCCTTT+TGG | - | chr1_3:54463313-54463332 | Msa0125810:intron | 25.0% |
| !!! | AGAAATTGTCGATTCAAAAT+TGG | - | chr1_3:54463709-54463728 | Msa0125810:intron | 25.0% |
| !!! | GAAATTGTCGATTCAAAATT+GGG | - | chr1_3:54463710-54463729 | Msa0125810:intron | 25.0% |
| !!! | AAATTGTCGATTCAAAATTG+GGG | - | chr1_3:54463711-54463730 | Msa0125810:intron | 25.0% |
| !!! | AAGTAAGTCTTTTGTTGTTT+TGG | - | chr1_3:54463738-54463757 | Msa0125810:intron | 25.0% |
| !!! | AGTAAGTCTTTTGTTGTTTT+GGG | - | chr1_3:54463739-54463758 | Msa0125810:intron | 25.0% |
| !!! | ATTGTAGAATGTTTTGATGA+TGG | - | chr1_3:54463786-54463805 | Msa0125810:intron | 25.0% |
| ! | TTCATTCAATTCACTATTCT+CGG | + | chr1_3:54464017-54464036 | None:intergenic | 25.0% |
| ! | ATAGTGAATTGAATGAAGTT+TGG | - | chr1_3:54464020-54464039 | Msa0125810:intron | 25.0% |
| ! | CATGAATTTGATAAACCTTA+CGG | - | chr1_3:54464210-54464229 | Msa0125810:CDS | 25.0% |
| ! | TATCATTTATTCATTCCGTA+AGG | + | chr1_3:54464228-54464247 | None:intergenic | 25.0% |
| ! | TGATAAACAACAAATTAGTG+AGG | - | chr1_3:54464243-54464262 | Msa0125810:CDS | 25.0% |
| ! | GATAAACAACAAATTAGTGA+GGG | - | chr1_3:54464244-54464263 | Msa0125810:CDS | 25.0% |
| !! | AATAAGTCTTGACTATTTTG+GGG | + | chr1_3:54464298-54464317 | None:intergenic | 25.0% |
| !! | GAAATAAGTCTTGACTATTT+TGG | + | chr1_3:54464300-54464319 | None:intergenic | 25.0% |
| !! | AATGCAATTACCAAATTTTG+GGG | + | chr1_3:54465333-54465352 | None:intergenic | 25.0% |
| !! | CAATGCAATTACCAAATTTT+GGG | + | chr1_3:54465334-54465353 | None:intergenic | 25.0% |
| !! | CAAAATTTGGTAATTGCATT+GGG | - | chr1_3:54465333-54465352 | Msa0125810:intron | 25.0% |
| !! | AAAATTTGGTAATTGCATTG+GGG | - | chr1_3:54465334-54465353 | Msa0125810:intron | 25.0% |
| !!! | GTTGTTAACATTTTATTTGG+CGG | - | chr1_3:54465541-54465560 | Msa0125810:five_prime_UTR | 25.0% |
| GGATCCTCGTAATAAATAAT+TGG | - | chr1_3:54456971-54456990 | Msa0125810:three_prime_UTR | 30.0% | |
| TCTCCCAATTATTTATTACG+AGG | + | chr1_3:54456978-54456997 | None:intergenic | 30.0% | |
| ATATTCACCCAACTCAATTA+TGG | - | chr1_3:54457207-54457226 | Msa0125810:exon | 30.0% | |
| ! | GGTTCAAATTTTATCGGAAA+TGG | - | chr1_3:54457288-54457307 | Msa0125810:CDS | 30.0% |
| CTCAGCAATAGTTGAATAAT+GGG | + | chr1_3:54457489-54457508 | None:intergenic | 30.0% | |
| TGAATCAAGAGAAAAGACTA+CGG | - | chr1_3:54457682-54457701 | Msa0125810:intron | 30.0% | |
| ATATGTCATAGGAAACGATA+AGG | + | chr1_3:54457732-54457751 | None:intergenic | 30.0% | |
| GTACGAATGAACAATCAAAT+CGG | + | chr1_3:54457790-54457809 | None:intergenic | 30.0% | |
| TCTGAATTGGAATTAAAAGC+TGG | + | chr1_3:54457875-54457894 | None:intergenic | 30.0% | |
| ! | ATGTTCACTATGTTCTGAAT+TGG | + | chr1_3:54457888-54457907 | None:intergenic | 30.0% |
| GCACTGAATACAAAGAAAAT+AGG | + | chr1_3:54458034-54458053 | None:intergenic | 30.0% | |
| AATATCATGAAAAGAAGGCA+AGG | + | chr1_3:54458382-54458401 | None:intergenic | 30.0% | |
| AATGAAGTGATTAACTTACG+TGG | + | chr1_3:54458463-54458482 | None:intergenic | 30.0% | |
| ! | GAAATCTTCCAGATTCTTTT+TGG | - | chr1_3:54458555-54458574 | Msa0125810:intron | 30.0% |
| GGAAACCACAAAATAAGAAT+AGG | + | chr1_3:54458678-54458697 | None:intergenic | 30.0% | |
| TGTGGTTTCCTTATTGTAAA+TGG | - | chr1_3:54458688-54458707 | Msa0125810:intron | 30.0% | |
| !!! | TCTTGGATTTTTTGCTCAAT+GGG | + | chr1_3:54459111-54459130 | None:intergenic | 30.0% |
| !!! | ATCTTGGATTTTTTGCTCAA+TGG | + | chr1_3:54459112-54459131 | None:intergenic | 30.0% |
| ! | AATCACTGGAAGAATGTTTT+TGG | - | chr1_3:54459399-54459418 | Msa0125810:CDS | 30.0% |
| ! | ATCACTGGAAGAATGTTTTT+GGG | - | chr1_3:54459400-54459419 | Msa0125810:CDS | 30.0% |
| TACCATGACTGAACAATTTA+GGG | - | chr1_3:54459653-54459672 | Msa0125810:intron | 30.0% | |
| ACCGATCATATCATTATTTG+TGG | - | chr1_3:54459797-54459816 | Msa0125810:intron | 30.0% | |
| CCCACAAATAATGATATGAT+CGG | + | chr1_3:54459801-54459820 | None:intergenic | 30.0% | |
| CCGATCATATCATTATTTGT+GGG | - | chr1_3:54459798-54459817 | Msa0125810:intron | 30.0% | |
| AAACACAAGATGAAGGAAAT+TGG | + | chr1_3:54459932-54459951 | None:intergenic | 30.0% | |
| TTCCAAGAAAACAGATTGAT+AGG | - | chr1_3:54460023-54460042 | Msa0125810:CDS | 30.0% | |
| ! | ATCCTATCAATCTGTTTTCT+TGG | + | chr1_3:54460028-54460047 | None:intergenic | 30.0% |
| ! | ATTTCCTTCTTTTGTCAAAC+CGG | - | chr1_3:54460115-54460134 | Msa0125810:intron | 30.0% |
| ATAATTATACTGCCAGCAAA+AGG | - | chr1_3:54460421-54460440 | Msa0125810:CDS | 30.0% | |
| TAATTATACTGCCAGCAAAA+GGG | - | chr1_3:54460422-54460441 | Msa0125810:CDS | 30.0% | |
| TCAAGTGATTTCAGTTCAAA+CGG | + | chr1_3:54460501-54460520 | None:intergenic | 30.0% | |
| TCACTAACATCTAAGTCATA+GGG | - | chr1_3:54460597-54460616 | Msa0125810:CDS | 30.0% | |
| !!! | TATGGAGATTTTAGAATTGG+GGG | - | chr1_3:54460663-54460682 | Msa0125810:intron | 30.0% |
| AGTTAATATGTAGGAGAATC+TGG | - | chr1_3:54460758-54460777 | Msa0125810:intron | 30.0% | |
| TAAATCCTGTCCCAATAATT+AGG | + | chr1_3:54460852-54460871 | None:intergenic | 30.0% | |
| AAGGACTTATAAAGATCTAC+AGG | - | chr1_3:54461474-54461493 | Msa0125810:intron | 30.0% | |
| ! | CTGAAGTAGATTGAGATTTT+TGG | - | chr1_3:54461716-54461735 | Msa0125810:intron | 30.0% |
| ATCTTGAAGGAATGACATAT+AGG | - | chr1_3:54461871-54461890 | Msa0125810:intron | 30.0% | |
| GCAGAATTTCATCATCATTT+GGG | + | chr1_3:54462054-54462073 | None:intergenic | 30.0% | |
| TGCAGAATTTCATCATCATT+TGG | + | chr1_3:54462055-54462074 | None:intergenic | 30.0% | |
| TGGCTTATTAGTATTCTGAA+GGG | + | chr1_3:54462198-54462217 | None:intergenic | 30.0% | |
| CACAAGTTATAACCACAAAT+GGG | - | chr1_3:54462216-54462235 | Msa0125810:intron | 30.0% | |
| TCTTACTTTACTCAATTCGA+TGG | + | chr1_3:54462297-54462316 | None:intergenic | 30.0% | |
| TGAATCATTTCTACAACATC+GGG | + | chr1_3:54462514-54462533 | None:intergenic | 30.0% | |
| TATACACTCACAAAAATGTG+TGG | + | chr1_3:54462606-54462625 | None:intergenic | 30.0% | |
| ! | GAAGACTGATTAAGGTTTTA+TGG | + | chr1_3:54462636-54462655 | None:intergenic | 30.0% |
| AACATAAGTATCTAAGTGGT+AGG | + | chr1_3:54462737-54462756 | None:intergenic | 30.0% | |
| CAGTAACATAAGTATCTAAG+TGG | + | chr1_3:54462741-54462760 | None:intergenic | 30.0% | |
| CACTTAGATACTTATGTTAC+TGG | - | chr1_3:54462739-54462758 | Msa0125810:CDS | 30.0% | |
| GATACTTATGTTACTGGTAT+AGG | - | chr1_3:54462745-54462764 | Msa0125810:intron | 30.0% | |
| TTCTGACCATAATAATATGC+AGG | - | chr1_3:54462829-54462848 | Msa0125810:intron | 30.0% | |
| ATTATTAGGGAAAACATCGT+TGG | - | chr1_3:54462884-54462903 | Msa0125810:CDS | 30.0% | |
| ! | ATATGATCTTGTGCTTCTTT+TGG | - | chr1_3:54463004-54463023 | Msa0125810:intron | 30.0% |
| TATTCAGACTTCATTGAAGA+AGG | - | chr1_3:54463083-54463102 | Msa0125810:CDS | 30.0% | |
| GATATGCAAGCAATTGAAAA+AGG | + | chr1_3:54463117-54463136 | None:intergenic | 30.0% | |
| GACAAGAAAAAATCTCAAGA+GGG | + | chr1_3:54463368-54463387 | None:intergenic | 30.0% | |
| ! | GAAAAGGGTCTTATAAAAAG+AGG | + | chr1_3:54463390-54463409 | None:intergenic | 30.0% |
| ! | TGACATAATTAGGAGTATGT+TGG | + | chr1_3:54463442-54463461 | None:intergenic | 30.0% |
| TACTCTTCATGAGAGAAAAT+TGG | + | chr1_3:54463513-54463532 | None:intergenic | 30.0% | |
| TCAACATTGTCCTATACTTA+AGG | - | chr1_3:54463601-54463620 | Msa0125810:intron | 30.0% | |
| !!! | GTAGAAGTTTTTAGTATGAC+TGG | - | chr1_3:54463629-54463648 | Msa0125810:intron | 30.0% |
| ! | TTAATCTTTTGTCCTCTTCT+CGG | - | chr1_3:54463913-54463932 | Msa0125810:CDS | 30.0% |
| !!! | GCTTTAGCTTTTAATTGTTG+TGG | - | chr1_3:54463940-54463959 | Msa0125810:intron | 30.0% |
| !! | ATTAGCCTTTACATGAAAGA+AGG | - | chr1_3:54465004-54465023 | Msa0125810:intron | 30.0% |
| ! | TTTCTGAGAGAGCATATTTA+AGG | - | chr1_3:54465050-54465069 | Msa0125810:intron | 30.0% |
| ! | TAATAACCTTTCCCATTTTC+AGG | - | chr1_3:54465174-54465193 | Msa0125810:intron | 30.0% |
| CAGCATAATTACAAAATGAC+CGG | + | chr1_3:54465286-54465305 | None:intergenic | 30.0% | |
| ! | ATGCAATTACCAAATTTTGG+GGG | + | chr1_3:54465332-54465351 | None:intergenic | 30.0% |
| ! | CCAATGCAATTACCAAATTT+TGG | + | chr1_3:54465335-54465354 | None:intergenic | 30.0% |
| ! | CCAAAATTTGGTAATTGCAT+TGG | - | chr1_3:54465332-54465351 | Msa0125810:intron | 30.0% |
| !!! | TCTCTAGATTTTGACTGACT+CGG | - | chr1_3:54456950-54456969 | Msa0125810:three_prime_UTR | 35.0% |
| TGTTGTTCATCTTCAGTGTT+AGG | - | chr1_3:54457142-54457161 | Msa0125810:three_prime_UTR | 35.0% | |
| GATAGTACATAACATGTCAC+TGG | - | chr1_3:54457234-54457253 | Msa0125810:CDS | 35.0% | |
| CCTCAGCAATAGTTGAATAA+TGG | + | chr1_3:54457490-54457509 | None:intergenic | 35.0% | |
| CCATTATTCAACTATTGCTG+AGG | - | chr1_3:54457487-54457506 | Msa0125810:CDS | 35.0% | |
| ACTATTGCTGAGGATGAATT+AGG | - | chr1_3:54457497-54457516 | Msa0125810:intron | 35.0% | |
| CGATAAGGACAGCAAAAAAA+AGG | + | chr1_3:54457717-54457736 | None:intergenic | 35.0% | |
| ! | CAATGAAGAGCATATGTCAT+AGG | + | chr1_3:54457743-54457762 | None:intergenic | 35.0% |
| !! | AAATTGGTGCTCACATTTTC+TGG | + | chr1_3:54457914-54457933 | None:intergenic | 35.0% |
| ATGTGAGCACCAATTTCATT+TGG | - | chr1_3:54457918-54457937 | Msa0125810:intron | 35.0% | |
| TTCCTCTGTCCAAATGAAAT+TGG | + | chr1_3:54457930-54457949 | None:intergenic | 35.0% | |
| GGAAAATAATAGTAGCTCTC+AGG | - | chr1_3:54457946-54457965 | Msa0125810:intron | 35.0% | |
| AAGAAATGCGTGGAAAAGTT+TGG | - | chr1_3:54457970-54457989 | Msa0125810:intron | 35.0% | |
| CTGACACATACAAAGTTTGT+TGG | - | chr1_3:54458231-54458250 | Msa0125810:intron | 35.0% | |
| ACGTCTAATTTAAGTGGCTT+AGG | + | chr1_3:54458357-54458376 | None:intergenic | 35.0% | |
| AAGGAGACGTCTAATTTAAG+TGG | + | chr1_3:54458363-54458382 | None:intergenic | 35.0% | |
| !! | AAGAAGCACCAAAAAGAATC+TGG | + | chr1_3:54458566-54458585 | None:intergenic | 35.0% |
| !! | TGCATCTCGTTTGTTTTCAT+TGG | - | chr1_3:54458592-54458611 | Msa0125810:intron | 35.0% |
| !! | ATCTCGTTTGTTTTCATTGG+AGG | - | chr1_3:54458595-54458614 | Msa0125810:intron | 35.0% |
| GTTTCTTGTTCTTCAAGCTA+AGG | - | chr1_3:54458617-54458636 | Msa0125810:CDS | 35.0% | |
| AAAGTATGTGTGAATCTGTG+TGG | - | chr1_3:54458794-54458813 | Msa0125810:CDS | 35.0% | |
| ACCATACAACTAAATCGAGA+TGG | - | chr1_3:54458951-54458970 | Msa0125810:intron | 35.0% | |
| TCCATCTCGATTTAGTTGTA+TGG | + | chr1_3:54458955-54458974 | None:intergenic | 35.0% | |
| CAACTAAATCGAGATGGAAA+CGG | - | chr1_3:54458957-54458976 | Msa0125810:intron | 35.0% | |
| AATCTGCCAAAACATGTCTT+AGG | - | chr1_3:54459030-54459049 | Msa0125810:intron | 35.0% | |
| ! | CAATCTCCTAAGACATGTTT+TGG | + | chr1_3:54459039-54459058 | None:intergenic | 35.0% |
| !!! | AGTTTTCAGGACTAGTTTAC+CGG | + | chr1_3:54459088-54459107 | None:intergenic | 35.0% |
| ATTTCTTGGAAACATGGGTT+GGG | + | chr1_3:54459150-54459169 | None:intergenic | 35.0% | |
| AATTTCTTGGAAACATGGGT+TGG | + | chr1_3:54459151-54459170 | None:intergenic | 35.0% | |
| ! | AATCAAATTTTAAGCTGCCG+AGG | + | chr1_3:54459311-54459330 | None:intergenic | 35.0% |
| GGGCCATTATTAAATTATCC+AGG | - | chr1_3:54459366-54459385 | Msa0125810:CDS | 35.0% | |
| CAGTGATTGTTTATTGTTCC+TGG | + | chr1_3:54459387-54459406 | None:intergenic | 35.0% | |
| CAGGAACAATAAACAATCAC+TGG | - | chr1_3:54459385-54459404 | Msa0125810:CDS | 35.0% | |
| ! | CCAACAAAATGTGTGTCATT+TGG | + | chr1_3:54459549-54459568 | None:intergenic | 35.0% |
| ! | CCAAATGACACACATTTTGT+TGG | - | chr1_3:54459546-54459565 | Msa0125810:intron | 35.0% |
| !! | TTGGCTTTGTTCTTGCAATA+TGG | - | chr1_3:54459601-54459620 | Msa0125810:CDS | 35.0% |
| !! | TGGCTTTGTTCTTGCAATAT+GGG | - | chr1_3:54459602-54459621 | Msa0125810:CDS | 35.0% |
| GTACCATGACTGAACAATTT+AGG | - | chr1_3:54459652-54459671 | Msa0125810:intron | 35.0% | |
| TACCCTAAATTGTTCAGTCA+TGG | + | chr1_3:54459658-54459677 | None:intergenic | 35.0% | |
| GCAATCAAAACACAAGATGA+AGG | + | chr1_3:54459939-54459958 | None:intergenic | 35.0% | |
| !!! | TCATCTTGTGTTTTGATTGC+TGG | - | chr1_3:54459939-54459958 | Msa0125810:CDS | 35.0% |
| ! | ATGTCGTTTCATTTCTATGC+AGG | - | chr1_3:54459972-54459991 | Msa0125810:CDS | 35.0% |
| TTGGAAGATCAGACATAAGA+AGG | + | chr1_3:54460009-54460028 | None:intergenic | 35.0% | |
| ATATTGATCTCCTTAGCAAG+AGG | - | chr1_3:54460077-54460096 | Msa0125810:intron | 35.0% | |
| AATTATACTGCCAGCAAAAG+GGG | - | chr1_3:54460423-54460442 | Msa0125810:CDS | 35.0% | |
| GTCACTAACATCTAAGTCAT+AGG | - | chr1_3:54460596-54460615 | Msa0125810:CDS | 35.0% | |
| CACTAACATCTAAGTCATAG+GGG | - | chr1_3:54460598-54460617 | Msa0125810:CDS | 35.0% | |
| ! | AGTGTCTGCTTAAGTTGTTA+TGG | - | chr1_3:54460645-54460664 | Msa0125810:CDS | 35.0% |
| !!! | ATGGAGATTTTAGAATTGGG+GGG | - | chr1_3:54460664-54460683 | Msa0125810:intron | 35.0% |
| TTAGTCCTAATTATTGGGAC+AGG | - | chr1_3:54460844-54460863 | Msa0125810:intron | 35.0% | |
| AGTAATAGAAGCTAAGGTCT+AGG | + | chr1_3:54460900-54460919 | None:intergenic | 35.0% | |
| ATATTAGCAGTGAAGTCACT+AGG | + | chr1_3:54460984-54461003 | None:intergenic | 35.0% | |
| AAAACAACTCGAGCTATCTA+TGG | + | chr1_3:54461087-54461106 | None:intergenic | 35.0% | |
| ! | CATATCTGGAATTGGTTGAA+GGG | + | chr1_3:54461230-54461249 | None:intergenic | 35.0% |
| CTTCAACCAATTCCAGATAT+GGG | - | chr1_3:54461229-54461248 | Msa0125810:intron | 35.0% | |
| GTAACAAACCTCAACTATTG+TGG | + | chr1_3:54461263-54461282 | None:intergenic | 35.0% | |
| CTTCAACAAGTCACATGTTT+GGG | + | chr1_3:54461381-54461400 | None:intergenic | 35.0% | |
| ACTTCAACAAGTCACATGTT+TGG | + | chr1_3:54461382-54461401 | None:intergenic | 35.0% | |
| !! | TGACTTGTTGAAGTCAATCT+CGG | - | chr1_3:54461388-54461407 | Msa0125810:intron | 35.0% |
| ! | TGTGTCGTGTTTCTAAAGAT+TGG | - | chr1_3:54461532-54461551 | Msa0125810:intron | 35.0% |
| TATGTCATTCCTTCAAGATC+AGG | + | chr1_3:54461870-54461889 | None:intergenic | 35.0% | |
| TTATTTCAGGCTGTTGTATG+TGG | - | chr1_3:54461998-54462017 | Msa0125810:intron | 35.0% | |
| !! | GGAAGTATATTTTCCCATTC+CGG | + | chr1_3:54462030-54462049 | None:intergenic | 35.0% |
| GAATTTCATCATCATTTGGG+TGG | + | chr1_3:54462051-54462070 | None:intergenic | 35.0% | |
| GTGGCTTATTAGTATTCTGA+AGG | + | chr1_3:54462199-54462218 | None:intergenic | 35.0% | |
| CCATTTGTGGTTATAACTTG+TGG | + | chr1_3:54462218-54462237 | None:intergenic | 35.0% | |
| CCACAAGTTATAACCACAAA+TGG | - | chr1_3:54462215-54462234 | Msa0125810:intron | 35.0% | |
| ATAACCACAAATGGGAAAGA+AGG | - | chr1_3:54462224-54462243 | Msa0125810:intron | 35.0% | |
| ! | TTTTCCTTCTTTCCCATTTG+TGG | + | chr1_3:54462231-54462250 | None:intergenic | 35.0% |
| AATGGGAAAGAAGGAAAAGA+TGG | - | chr1_3:54462233-54462252 | Msa0125810:intron | 35.0% | |
| ! | AATGCATTCTTTTACTTGGG+TGG | - | chr1_3:54462485-54462504 | Msa0125810:CDS | 35.0% |
| ! | CAAGAGTATGAGAACTATCT+CGG | - | chr1_3:54462532-54462551 | Msa0125810:intron | 35.0% |
| AAACATACCAAAACACTTCC+AGG | + | chr1_3:54462559-54462578 | None:intergenic | 35.0% | |
| ! | GTGGTAGGATATTGCATTTT+CGG | + | chr1_3:54462722-54462741 | None:intergenic | 35.0% |
| CAATGTCATGTATCTTCTGA+TGG | + | chr1_3:54462788-54462807 | None:intergenic | 35.0% | |
| CATCAGAAGATACATGACAT+TGG | - | chr1_3:54462786-54462805 | Msa0125810:intron | 35.0% | |
| ! | AGAATGTTCGAGTTTCTCAT+AGG | - | chr1_3:54462921-54462940 | Msa0125810:intron | 35.0% |
| ! | GAATGTTCGAGTTTCTCATA+GGG | - | chr1_3:54462922-54462941 | Msa0125810:intron | 35.0% |
| CTTGCATATCTGACAAAGAT+TGG | - | chr1_3:54463127-54463146 | Msa0125810:intron | 35.0% | |
| TCTGCAAAAACAAAAGTCAG+TGG | + | chr1_3:54463201-54463220 | None:intergenic | 35.0% | |
| GAAAATATCTGCGACAAACT+TGG | - | chr1_3:54463267-54463286 | Msa0125810:intron | 35.0% | |
| GGACAAGAAAAAATCTCAAG+AGG | + | chr1_3:54463369-54463388 | None:intergenic | 35.0% | |
| ! | GACAATGTTGACTAAATCAG+AGG | + | chr1_3:54463592-54463611 | None:intergenic | 35.0% |
| CATTGTCCTATACTTAAGGA+CGG | - | chr1_3:54463605-54463624 | Msa0125810:intron | 35.0% | |
| !!! | AGTTTTTAGTATGACTGGAG+AGG | - | chr1_3:54463634-54463653 | Msa0125810:intron | 35.0% |
| TAATCATCGTTGGATTGCAT+TGG | - | chr1_3:54463658-54463677 | Msa0125810:intron | 35.0% | |
| AAAGACATACTAGATGCAGA+GGG | - | chr1_3:54464043-54464062 | Msa0125810:intron | 35.0% | |
| GGGTGATGAAATATATGTGA+AGG | - | chr1_3:54464063-54464082 | Msa0125810:CDS | 35.0% | |
| ATCTACTCATGTTGTCATTG+TGG | - | chr1_3:54464090-54464109 | Msa0125810:CDS | 35.0% | |
| GTATGTAATCATTACGACTG+TGG | - | chr1_3:54464127-54464146 | Msa0125810:CDS | 35.0% | |
| GCTAGGAAACATTCAAATAG+AGG | + | chr1_3:54464177-54464196 | None:intergenic | 35.0% | |
| TCAACTAGCAAGTGTATGTT+TGG | - | chr1_3:54464324-54464343 | Msa0125810:CDS | 35.0% | |
| ! | TGTATGTTTGGAACTTACTG+TGG | - | chr1_3:54464336-54464355 | Msa0125810:CDS | 35.0% |
| ! | TACTGTGGCGAACATAATTT+TGG | - | chr1_3:54464351-54464370 | Msa0125810:CDS | 35.0% |
| ! | ACTGTGGCGAACATAATTTT+GGG | - | chr1_3:54464352-54464371 | Msa0125810:CDS | 35.0% |
| ! | GTTTGAAGCAAAGCTGTAAA+AGG | + | chr1_3:54464421-54464440 | None:intergenic | 35.0% |
| TTGCTCGTGATACACTAATT+TGG | - | chr1_3:54464597-54464616 | Msa0125810:CDS | 35.0% | |
| ACTAGAACATGATTCAGTTG+AGG | - | chr1_3:54464696-54464715 | Msa0125810:intron | 35.0% | |
| ATCATAACAAACGACCAACT+GGG | - | chr1_3:54464909-54464928 | Msa0125810:intron | 35.0% | |
| TCTCTCCTTCTTTCATGTAA+AGG | + | chr1_3:54465012-54465031 | None:intergenic | 35.0% | |
| GTTCTTCTTCACATAACCTA+TGG | + | chr1_3:54465086-54465105 | None:intergenic | 35.0% | |
| TGATTACCTGAAAATGGGAA+AGG | + | chr1_3:54465183-54465202 | None:intergenic | 35.0% | |
| !! | TGGGTTGATTACCTGAAAAT+GGG | + | chr1_3:54465188-54465207 | None:intergenic | 35.0% |
| !! | TTGGGTTGATTACCTGAAAA+TGG | + | chr1_3:54465189-54465208 | None:intergenic | 35.0% |
| ! | ATTGATAGTCATATCTGAGC+TGG | - | chr1_3:54465249-54465268 | Msa0125810:intron | 35.0% |
| AAATTCTGACCCCCAAAATT+TGG | - | chr1_3:54465320-54465339 | Msa0125810:intron | 35.0% | |
| ACACCAACAACAAGAATTCC+AGG | - | chr1_3:54457115-54457134 | Msa0125810:three_prime_UTR | 40.0% | |
| ! | GTACCTGGAATTCTTGTTGT+TGG | + | chr1_3:54457121-54457140 | None:intergenic | 40.0% |
| GAAGATGAACAACAAGTACC+TGG | + | chr1_3:54457136-54457155 | None:intergenic | 40.0% | |
| CCATGTCTCGTGAAATTACA+AGG | + | chr1_3:54457270-54457289 | None:intergenic | 40.0% | |
| CCTTGTAATTTCACGAGACA+TGG | - | chr1_3:54457267-54457286 | Msa0125810:CDS | 40.0% | |
| !!! | GATGGCAGGTTGATTTTCAA+AGG | - | chr1_3:54457849-54457868 | Msa0125810:intron | 40.0% |
| CACCAATTTCATTTGGACAG+AGG | - | chr1_3:54457925-54457944 | Msa0125810:intron | 40.0% | |
| GCACATATCGAACTATTGCT+TGG | + | chr1_3:54458275-54458294 | None:intergenic | 40.0% | |
| AAGTGGCTTAGGTGTATTCA+AGG | + | chr1_3:54458346-54458365 | None:intergenic | 40.0% | |
| ATATTAGATGGAGCTTAGCG+CGG | - | chr1_3:54458397-54458416 | Msa0125810:intron | 40.0% | |
| ! | TCCTTTTTGTCAAGGCTTCT+GGG | + | chr1_3:54458728-54458747 | None:intergenic | 40.0% |
| ! | TTCCTTTTTGTCAAGGCTTC+TGG | + | chr1_3:54458729-54458748 | None:intergenic | 40.0% |
| GTAACAAGTAATGATCACCG+TGG | + | chr1_3:54458896-54458915 | None:intergenic | 40.0% | |
| AGTTGTATGGTGCGTTTACT+TGG | + | chr1_3:54458942-54458961 | None:intergenic | 40.0% | |
| AAATCGAGATGGAAACGGAA+TGG | - | chr1_3:54458962-54458981 | Msa0125810:intron | 40.0% | |
| CTCTGAGTCATACCAAATTG+CGG | - | chr1_3:54458994-54459013 | Msa0125810:intron | 40.0% | |
| AGCATTGTGATTCCGCAATT+TGG | + | chr1_3:54459009-54459028 | None:intergenic | 40.0% | |
| TCATATACAACTTGTGGAGC+CGG | - | chr1_3:54459066-54459085 | Msa0125810:intron | 40.0% | |
| ! | TTTGCTCAATGGGAGTTTTC+AGG | + | chr1_3:54459101-54459120 | None:intergenic | 40.0% |
| ! | GTTTGTTACCACAGAGTCAT+GGG | - | chr1_3:54459246-54459265 | Msa0125810:intron | 40.0% |
| AAAATGATCCCATGACTCTG+TGG | + | chr1_3:54459257-54459276 | None:intergenic | 40.0% | |
| !!! | ACTGGAAGAATGTTTTTGGG+AGG | - | chr1_3:54459403-54459422 | Msa0125810:CDS | 40.0% |
| !!! | AAGAATGTTTTTGGGAGGCA+TGG | - | chr1_3:54459408-54459427 | Msa0125810:CDS | 40.0% |
| !!! | AGAATGTTTTTGGGAGGCAT+GGG | - | chr1_3:54459409-54459428 | Msa0125810:CDS | 40.0% |
| ATAACACGCTCAATACGTGT+TGG | + | chr1_3:54459582-54459601 | None:intergenic | 40.0% | |
| ACACGTATTGAGCGTGTTAT+TGG | - | chr1_3:54459582-54459601 | Msa0125810:CDS | 40.0% | |
| !! | GGCTTTGTTCTTGCAATATG+GGG | - | chr1_3:54459603-54459622 | Msa0125810:CDS | 40.0% |
| CGCAACAGAGTAATATGCAA+AGG | - | chr1_3:54459741-54459760 | Msa0125810:intron | 40.0% | |
| AGAGTAATATGCAAAGGCTC+AGG | - | chr1_3:54459747-54459766 | Msa0125810:intron | 40.0% | |
| GAGTAATATGCAAAGGCTCA+GGG | - | chr1_3:54459748-54459767 | Msa0125810:intron | 40.0% | |
| !! | AAAGCCGGTTTGACAAAAGA+AGG | + | chr1_3:54460122-54460141 | None:intergenic | 40.0% |
| TTAGGATTGCTCAGTGCATT+GGG | - | chr1_3:54460179-54460198 | Msa0125810:CDS | 40.0% | |
| !!! | TGGAGATTTTAGAATTGGGG+GGG | - | chr1_3:54460665-54460684 | Msa0125810:intron | 40.0% |
| !! | AGCTCTAGGTTATTCGATCT+AGG | - | chr1_3:54460944-54460963 | Msa0125810:intron | 40.0% |
| ! | GCTCTAGGTTATTCGATCTA+GGG | - | chr1_3:54460945-54460964 | Msa0125810:intron | 40.0% |
| TTTACTTGCCTCGTAGTGTT+CGG | - | chr1_3:54461055-54461074 | Msa0125810:CDS | 40.0% | |
| ! | CCATATCTGGAATTGGTTGA+AGG | + | chr1_3:54461231-54461250 | None:intergenic | 40.0% |
| CCTTCAACCAATTCCAGATA+TGG | - | chr1_3:54461228-54461247 | Msa0125810:intron | 40.0% | |
| ! | ACAGAACCCATATCTGGAAT+TGG | + | chr1_3:54461238-54461257 | None:intergenic | 40.0% |
| TTCTGTCTCCACAATAGTTG+AGG | - | chr1_3:54461252-54461271 | Msa0125810:CDS | 40.0% | |
| !! | GACTTGTTGAAGTCAATCTC+GGG | - | chr1_3:54461389-54461408 | Msa0125810:intron | 40.0% |
| ! | ACTTGTTGAAGTCAATCTCG+GGG | - | chr1_3:54461390-54461409 | Msa0125810:intron | 40.0% |
| TTGGATGCAACATCTTCTAC+TGG | + | chr1_3:54461428-54461447 | None:intergenic | 40.0% | |
| TTTCGATTTCTCGGATGAGT+TGG | - | chr1_3:54461686-54461705 | Msa0125810:intron | 40.0% | |
| TGCCCTACACATATCTATTC+CGG | - | chr1_3:54461786-54461805 | Msa0125810:intron | 40.0% | |
| CACCGGAATAGATATGTGTA+GGG | + | chr1_3:54461791-54461810 | None:intergenic | 40.0% | |
| ACACCGGAATAGATATGTGT+AGG | + | chr1_3:54461792-54461811 | None:intergenic | 40.0% | |
| CTGTTGTATGTGGTCTTTAC+CGG | - | chr1_3:54462008-54462027 | Msa0125810:intron | 40.0% | |
| TATGTGGTCTTTACCGGAAT+GGG | - | chr1_3:54462014-54462033 | Msa0125810:intron | 40.0% | |
| ! | GTCGTGTCTACCTTTTATCT+TGG | - | chr1_3:54462128-54462147 | Msa0125810:intron | 40.0% |
| CCAATGAACAATACCTAACG+AGG | + | chr1_3:54462173-54462192 | None:intergenic | 40.0% | |
| ! | CCTCGTTAGGTATTGTTCAT+TGG | - | chr1_3:54462170-54462189 | Msa0125810:intron | 40.0% |
| ACCTTAATCAGTCTTCCTCT+TGG | - | chr1_3:54462640-54462659 | Msa0125810:CDS | 40.0% | |
| ACCAAGAGGAAGACTGATTA+AGG | + | chr1_3:54462644-54462663 | None:intergenic | 40.0% | |
| !! | TTATTGTTTTGCGGACCAAG+AGG | + | chr1_3:54462658-54462677 | None:intergenic | 40.0% |
| ACTATAGATTGGAAACCCCA+TGG | - | chr1_3:54463029-54463048 | Msa0125810:intron | 40.0% | |
| !! | TCTGACAAAGATTGGCTTCT+TGG | - | chr1_3:54463135-54463154 | Msa0125810:intron | 40.0% |
| AGCAGATAGCTTATCTGTCT+TGG | + | chr1_3:54463229-54463248 | None:intergenic | 40.0% | |
| ! | CGCAGATATTTTCTGCAAGT+AGG | + | chr1_3:54463260-54463279 | None:intergenic | 40.0% |
| TCTACTCCGTCCTTAAGTAT+AGG | + | chr1_3:54463614-54463633 | None:intergenic | 40.0% | |
| !! | GATTGCATTGGCTGTTATGT+AGG | - | chr1_3:54463670-54463689 | Msa0125810:intron | 40.0% |
| AATGACCTTGAGCAGTTACA+AGG | + | chr1_3:54463895-54463914 | None:intergenic | 40.0% | |
| GAAAGACATACTAGATGCAG+AGG | - | chr1_3:54464042-54464061 | Msa0125810:intron | 40.0% | |
| CATGCACGAAATTTCATGCT+AGG | + | chr1_3:54464194-54464213 | None:intergenic | 40.0% | |
| GGATCACCATTATTCCTTCT+AGG | + | chr1_3:54464400-54464419 | None:intergenic | 40.0% | |
| TTCACATGGTTTACCAAACG+TGG | - | chr1_3:54464455-54464474 | Msa0125810:intron | 40.0% | |
| TTCACATGGTTTACCAAACG+TGG | - | chr1_3:54464455-54464474 | Msa0125810:intron | 40.0% | |
| ATCACGAGCAAAGCTAACAA+TGG | + | chr1_3:54464588-54464607 | None:intergenic | 40.0% | |
| TCGTGATACACTAATTTGGC+AGG | - | chr1_3:54464601-54464620 | Msa0125810:CDS | 40.0% | |
| ATACACTAATTTGGCAGGCA+TGG | - | chr1_3:54464606-54464625 | Msa0125810:CDS | 40.0% | |
| TACACTAATTTGGCAGGCAT+GGG | - | chr1_3:54464607-54464626 | Msa0125810:CDS | 40.0% | |
| TTGTAACCCTCTGATTTCCA+GGG | + | chr1_3:54464803-54464822 | None:intergenic | 40.0% | |
| !! | CAGTTGGTCGTTTGTTATGA+TGG | + | chr1_3:54464910-54464929 | None:intergenic | 40.0% |
| CATCATAACAAACGACCAAC+TGG | - | chr1_3:54464908-54464927 | Msa0125810:intron | 40.0% | |
| TCATAACAAACGACCAACTG+GGG | - | chr1_3:54464910-54464929 | Msa0125810:intron | 40.0% | |
| ATGCATACTTAATCCCCAGT+TGG | + | chr1_3:54464926-54464945 | None:intergenic | 40.0% | |
| TCAGAAAGCTCGGAAAATGA+AGG | + | chr1_3:54465037-54465056 | None:intergenic | 40.0% | |
| ATATGCTCTCTCAGAAAGCT+CGG | + | chr1_3:54465047-54465066 | None:intergenic | 40.0% | |
| TTAAGGAGAGAAGTAGCCAT+AGG | - | chr1_3:54465067-54465086 | Msa0125810:intron | 40.0% | |
| TCAGTCAATTCAAGAGAGAG+GGG | + | chr1_3:54465226-54465245 | None:intergenic | 40.0% | |
| GTCAGTCAATTCAAGAGAGA+GGG | + | chr1_3:54465227-54465246 | None:intergenic | 40.0% | |
| AGTCAGTCAATTCAAGAGAG+AGG | + | chr1_3:54465228-54465247 | None:intergenic | 40.0% | |
| ATAGTCATATCTGAGCTGGA+AGG | - | chr1_3:54465253-54465272 | Msa0125810:intron | 40.0% | |
| TAGTCATATCTGAGCTGGAA+GGG | - | chr1_3:54465254-54465273 | Msa0125810:intron | 40.0% | |
| !! | GGAGACACTTTTTGTCCACT+AGG | - | chr1_3:54456993-54457012 | Msa0125810:three_prime_UTR | 45.0% |
| AAGTGAGTGAGATTCATGGC+TGG | + | chr1_3:54457036-54457055 | None:intergenic | 45.0% | |
| GTGGAAGTGAGTGAGATTCA+TGG | + | chr1_3:54457040-54457059 | None:intergenic | 45.0% | |
| TATGTGTGCCTTGGAATCCA+TGG | + | chr1_3:54457078-54457097 | None:intergenic | 45.0% | |
| GATTGCTTGTGATGCTTCAC+AGG | - | chr1_3:54457567-54457586 | Msa0125810:intron | 45.0% | |
| CTTCACCTTCTCCATTACAC+AGG | - | chr1_3:54457624-54457643 | Msa0125810:intron | 45.0% | |
| ATGTAAACCCTGTAGGGAGA+TGG | - | chr1_3:54457831-54457850 | Msa0125810:intron | 45.0% | |
| TATGTGCCTCAGACTCTTGA+CGG | - | chr1_3:54458288-54458307 | Msa0125810:intron | 45.0% | |
| ! | CCTTTTTGTCAAGGCTTCTG+GGG | + | chr1_3:54458727-54458746 | None:intergenic | 45.0% |
| !! | GGTTTGTTACCACAGAGTCA+TGG | - | chr1_3:54459245-54459264 | Msa0125810:intron | 45.0% |
| CTAACGACCCAATTAGACCT+CGG | - | chr1_3:54459291-54459310 | Msa0125810:intron | 45.0% | |
| TAAGCTGCCGAGGTCTAATT+GGG | + | chr1_3:54459301-54459320 | None:intergenic | 45.0% | |
| TTAAGCTGCCGAGGTCTAAT+TGG | + | chr1_3:54459302-54459321 | None:intergenic | 45.0% | |
| TAATATGCAAAGGCTCAGGG+AGG | - | chr1_3:54459751-54459770 | Msa0125810:intron | 45.0% | |
| AATATGCAAAGGCTCAGGGA+GGG | - | chr1_3:54459752-54459771 | Msa0125810:intron | 45.0% | |
| CTTAGGATTGCTCAGTGCAT+TGG | - | chr1_3:54460178-54460197 | Msa0125810:CDS | 45.0% | |
| !!! | GGAGATTTTAGAATTGGGGG+GGG | - | chr1_3:54460666-54460685 | Msa0125810:intron | 45.0% |
| !!! | GAGATTTTAGAATTGGGGGG+GGG | - | chr1_3:54460667-54460686 | Msa0125810:intron | 45.0% |
| !!! | AGATTTTAGAATTGGGGGGG+GGG | - | chr1_3:54460668-54460687 | Msa0125810:intron | 45.0% |
| TATATCGTGTCAGCAGCTCT+AGG | - | chr1_3:54460930-54460949 | Msa0125810:intron | 45.0% | |
| GCAAGTAAACAGTCGATGGA+TGG | + | chr1_3:54461044-54461063 | None:intergenic | 45.0% | |
| GGAATTAACCGAACACTACG+AGG | + | chr1_3:54461066-54461085 | None:intergenic | 45.0% | |
| !! | TGGTACCGGTTTCGATTTCT+CGG | - | chr1_3:54461677-54461696 | Msa0125810:intron | 45.0% |
| CTCATCCGAGAAATCGAAAC+CGG | + | chr1_3:54461685-54461704 | None:intergenic | 45.0% | |
| GTATGTGGTCTTTACCGGAA+TGG | - | chr1_3:54462013-54462032 | Msa0125810:intron | 45.0% | |
| ! | TCCTAACAGATCTGGTTCCA+AGG | - | chr1_3:54462337-54462356 | Msa0125810:intron | 45.0% |
| ACCTTGGAACCAGATCTGTT+AGG | + | chr1_3:54462341-54462360 | None:intergenic | 45.0% | |
| CAGAACAGCAAGTCATACCT+TGG | + | chr1_3:54462357-54462376 | None:intergenic | 45.0% | |
| ATCACCATTTAGGCAGCAGA+CGG | - | chr1_3:54462445-54462464 | Msa0125810:CDS | 45.0% | |
| TATGAGAACTATCTCGGTCC+TGG | - | chr1_3:54462538-54462557 | Msa0125810:intron | 45.0% | |
| CAGAGACGCCATTAAATGAC+AGG | - | chr1_3:54462861-54462880 | Msa0125810:CDS | 45.0% | |
| ! | ATTGGAAACCCCATGGACTA+CGG | - | chr1_3:54463036-54463055 | Msa0125810:intron | 45.0% |
| !! | TTTAAGGTGCCGTAGTCCAT+GGG | + | chr1_3:54463048-54463067 | None:intergenic | 45.0% |
| !! | GACAAAGATTGGCTTCTTGG+AGG | - | chr1_3:54463138-54463157 | Msa0125810:intron | 45.0% |
| CTGGAGAGGATAATCATCGT+TGG | - | chr1_3:54463648-54463667 | Msa0125810:intron | 45.0% | |
| ! | TTGAGCCTTGTAACTGCTCA+AGG | - | chr1_3:54463887-54463906 | Msa0125810:CDS | 45.0% |
| GAAAACACTTGCAAAGCTCC+AGG | - | chr1_3:54464374-54464393 | Msa0125810:CDS | 45.0% | |
| TCCAGGCCTAGAAGGAATAA+TGG | - | chr1_3:54464391-54464410 | Msa0125810:CDS | 45.0% | |
| ACCATTATTCCTTCTAGGCC+TGG | + | chr1_3:54464395-54464414 | None:intergenic | 45.0% | |
| AAACGTTCGCTTGCTTCACA+TGG | - | chr1_3:54464441-54464460 | Msa0125810:intron | 45.0% | |
| ! | GGTTTACCAAACGTGGACTA+AGG | - | chr1_3:54464462-54464481 | Msa0125810:intron | 45.0% |
| TTACGTTCGCTTGCTTCACA+TGG | - | chr1_3:54464507-54464526 | Msa0125810:intron | 45.0% | |
| ! | GGTTTACCAAACGTGGACTA+AGG | - | chr1_3:54464462-54464481 | Msa0125810:intron | 45.0% |
| TGGTAATCCGGAGTTCAACT+GGG | + | chr1_3:54464769-54464788 | None:intergenic | 45.0% | |
| ! | GGAAATGGACTCTGGTAATC+CGG | + | chr1_3:54464781-54464800 | None:intergenic | 45.0% |
| CATTTCCCCTGGAAATCAGA+GGG | - | chr1_3:54464794-54464813 | Msa0125810:intron | 45.0% | |
| TGTAACCCTCTGATTTCCAG+GGG | + | chr1_3:54464802-54464821 | None:intergenic | 45.0% | |
| GTTGTAACCCTCTGATTTCC+AGG | + | chr1_3:54464804-54464823 | None:intergenic | 45.0% | |
| !! | GGGGTTCTGACTTTGGAATT+GGG | + | chr1_3:54465207-54465226 | None:intergenic | 45.0% |
| !! | AGGGGTTCTGACTTTGGAAT+TGG | + | chr1_3:54465208-54465227 | None:intergenic | 45.0% |
| AGTCATATCTGAGCTGGAAG+GGG | - | chr1_3:54465255-54465274 | Msa0125810:intron | 45.0% | |
| !!! | TTTTATTTTGAATAATATAT+TGG | - | chr1_3:54465137-54465156 | Msa0125810:intron | 5.0% |
| TGCTCTCACTTTGCTCCTAG+TGG | + | chr1_3:54457011-54457030 | None:intergenic | 50.0% | |
| CCTTGGAATCCATGGAAGAC+AGG | + | chr1_3:54457070-54457089 | None:intergenic | 50.0% | |
| CCTGTCTTCCATGGATTCCA+AGG | - | chr1_3:54457067-54457086 | Msa0125810:three_prime_UTR | 50.0% | |
| GATGAGCAGTATGTGTGCCT+TGG | + | chr1_3:54457087-54457106 | None:intergenic | 50.0% | |
| TGCTTGTGATGCTTCACAGG+AGG | - | chr1_3:54457570-54457589 | Msa0125810:intron | 50.0% | |
| GCTTGTGATGCTTCACAGGA+GGG | - | chr1_3:54457571-54457590 | Msa0125810:intron | 50.0% | |
| TTGTGCCCTGTCATATCAGC+TGG | - | chr1_3:54457594-54457613 | Msa0125810:intron | 50.0% | |
| CTGAGCCAGCTGATATGACA+GGG | + | chr1_3:54457602-54457621 | None:intergenic | 50.0% | |
| CGAATACCACGCCTGTGTAA+TGG | + | chr1_3:54457638-54457657 | None:intergenic | 50.0% | |
| GGTATTCGACCACACACTGA+AGG | - | chr1_3:54457650-54457669 | Msa0125810:intron | 50.0% | |
| TGCAACTCACCTTCAGTGTG+TGG | + | chr1_3:54457662-54457681 | None:intergenic | 50.0% | |
| GCTCTCAGGTAAGAAATGCG+TGG | - | chr1_3:54457960-54457979 | Msa0125810:intron | 50.0% | |
| GAAATGCCGCATGTGCTACA+GGG | - | chr1_3:54458156-54458175 | Msa0125810:intron | 50.0% | |
| CTTGTTCCGTCAAGAGTCTG+AGG | + | chr1_3:54458297-54458316 | None:intergenic | 50.0% | |
| GACTCTTGACGGAACAAGCT+TGG | - | chr1_3:54458299-54458318 | Msa0125810:intron | 50.0% | |
| CCCCAGAAGCCTTGACAAAA+AGG | - | chr1_3:54458724-54458743 | Msa0125810:intron | 50.0% | |
| GCTTTACATGTGTGCTGCCA+CGG | - | chr1_3:54458876-54458895 | Msa0125810:intron | 50.0% | |
| !! | CAATACGTGTTGGTTGCTGC+AGG | + | chr1_3:54459572-54459591 | None:intergenic | 50.0% |
| ! | GGGAGCACAAATGCAAGTCA+TGG | - | chr1_3:54459772-54459791 | Msa0125810:intron | 50.0% |
| !! | AGCGTCGATACCTCTTGCTA+AGG | + | chr1_3:54460090-54460109 | None:intergenic | 50.0% |
| !! | TTAGCAAGAGGTATCGACGC+TGG | - | chr1_3:54460089-54460108 | Msa0125810:intron | 50.0% |
| !! | TAGCAAGAGGTATCGACGCT+GGG | - | chr1_3:54460090-54460109 | Msa0125810:intron | 50.0% |
| TACTGCCAGCAAAAGGGGAT+CGG | - | chr1_3:54460428-54460447 | Msa0125810:CDS | 50.0% | |
| ! | ACTTACCGATCCCCTTTTGC+TGG | + | chr1_3:54460436-54460455 | None:intergenic | 50.0% |
| !!! | GATTTTAGAATTGGGGGGGG+GGG | - | chr1_3:54460669-54460688 | Msa0125810:intron | 50.0% |
| !!! | ATTTTAGAATTGGGGGGGGG+GGG | - | chr1_3:54460670-54460689 | Msa0125810:intron | 50.0% |
| GGGGAGAGAGAGCTGAAAAT+TGG | - | chr1_3:54460699-54460718 | Msa0125810:intron | 50.0% | |
| GCAGTGAAGTCACTAGGAGA+GGG | + | chr1_3:54460978-54460997 | None:intergenic | 50.0% | |
| AGCAGTGAAGTCACTAGGAG+AGG | + | chr1_3:54460979-54460998 | None:intergenic | 50.0% | |
| CGAGGCAAGTAAACAGTCGA+TGG | + | chr1_3:54461048-54461067 | None:intergenic | 50.0% | |
| GTGGAGACAGAACCCATATC+TGG | + | chr1_3:54461244-54461263 | None:intergenic | 50.0% | |
| GTTCAATGCTCTCGGCAGAA+AGG | - | chr1_3:54461455-54461474 | Msa0125810:intron | 50.0% | |
| TGCAGCTTGCCTGATCTTGA+AGG | - | chr1_3:54461858-54461877 | Msa0125810:intron | 50.0% | |
| GTAACGCGTCCTAACAGATC+TGG | - | chr1_3:54462329-54462348 | Msa0125810:intron | 50.0% | |
| TCACCATTTAGGCAGCAGAC+GGG | - | chr1_3:54462446-54462465 | Msa0125810:CDS | 50.0% | |
| ATTCCCGTCTGCTGCCTAAA+TGG | + | chr1_3:54462452-54462471 | None:intergenic | 50.0% | |
| !!! | TCTCGGTCCTGGAAGTGTTT+TGG | - | chr1_3:54462549-54462568 | Msa0125810:intron | 50.0% |
| !! | TTAAGGTGCCGTAGTCCATG+GGG | + | chr1_3:54463047-54463066 | None:intergenic | 50.0% |
| !! | CTTTAAGGTGCCGTAGTCCA+TGG | + | chr1_3:54463049-54463068 | None:intergenic | 50.0% |
| ! | CATGGACTACGGCACCTTAA+AGG | - | chr1_3:54463047-54463066 | Msa0125810:CDS | 50.0% |
| CTGCGACAAACTTGGAGTCA+AGG | - | chr1_3:54463275-54463294 | Msa0125810:intron | 50.0% | |
| GCCATCAGTGACCTATGTTG+CGG | - | chr1_3:54463853-54463872 | Msa0125810:intron | 50.0% | |
| ATCAGTGACCTATGTTGCGG+CGG | - | chr1_3:54463856-54463875 | Msa0125810:intron | 50.0% | |
| TATTTCCTCCGCCGCAACAT+AGG | + | chr1_3:54463867-54463886 | None:intergenic | 50.0% | |
| GCTAAAGCTCAACCGAGAAG+AGG | + | chr1_3:54463928-54463947 | None:intergenic | 50.0% | |
| CACACTCCTTAGTCCACGTT+TGG | + | chr1_3:54464471-54464490 | None:intergenic | 50.0% | |
| CACACTCCTTAGTCCACGTT+TGG | + | chr1_3:54464471-54464490 | None:intergenic | 50.0% | |
| CTTACCTCCCAGTTGAACTC+CGG | - | chr1_3:54464759-54464778 | Msa0125810:intron | 50.0% | |
| TAATCCGGAGTTCAACTGGG+AGG | + | chr1_3:54464766-54464785 | None:intergenic | 50.0% | |
| CTGGTAATCCGGAGTTCAAC+TGG | + | chr1_3:54464770-54464789 | None:intergenic | 50.0% | |
| TTACCAGAGTCCATTTCCCC+TGG | - | chr1_3:54464783-54464802 | Msa0125810:intron | 50.0% | |
| ! | TTTCCAGGGGAAATGGACTC+TGG | + | chr1_3:54464789-54464808 | None:intergenic | 50.0% |
| CCTCTGATTTCCAGGGGAAA+TGG | + | chr1_3:54464796-54464815 | None:intergenic | 50.0% | |
| CCATTTCCCCTGGAAATCAG+AGG | - | chr1_3:54464793-54464812 | Msa0125810:intron | 50.0% | |
| GCAGCATTGCAGTTAACTCG+AGG | - | chr1_3:54464956-54464975 | Msa0125810:intron | 50.0% | |
| ! | AGAGAGAGGGGTTCTGACTT+TGG | + | chr1_3:54465214-54465233 | None:intergenic | 50.0% |
| ATGGAAGACAGGTGCGCATG+TGG | + | chr1_3:54457059-54457078 | None:intergenic | 55.0% | |
| ACATGCGCACCTGTCTTCCA+TGG | - | chr1_3:54457058-54457077 | Msa0125810:three_prime_UTR | 55.0% | |
| CCTGAGCCAGCTGATATGAC+AGG | + | chr1_3:54457603-54457622 | None:intergenic | 55.0% | |
| ! | CCTGTCATATCAGCTGGCTC+AGG | - | chr1_3:54457600-54457619 | Msa0125810:intron | 55.0% |
| ! | CCACGCCTGTGTAATGGAGA+AGG | + | chr1_3:54457632-54457651 | None:intergenic | 55.0% |
| CCTTCTCCATTACACAGGCG+TGG | - | chr1_3:54457629-54457648 | Msa0125810:intron | 55.0% | |
| AAACCCTGTAGGGAGATGGC+AGG | - | chr1_3:54457835-54457854 | Msa0125810:intron | 55.0% | |
| CAACCTGCCATCTCCCTACA+GGG | + | chr1_3:54457841-54457860 | None:intergenic | 55.0% | |
| TCAACCTGCCATCTCCCTAC+AGG | + | chr1_3:54457842-54457861 | None:intergenic | 55.0% | |
| CGAAATGCCGCATGTGCTAC+AGG | - | chr1_3:54458155-54458174 | Msa0125810:intron | 55.0% | |
| TGTCGACCCTGTAGCACATG+CGG | + | chr1_3:54458165-54458184 | None:intergenic | 55.0% | |
| !! | CACGAGTTTGCTGTTCGCCT+AGG | - | chr1_3:54459866-54459885 | Msa0125810:intron | 55.0% |
| ACCTAGCTGAAGCAGTGCCT+AGG | + | chr1_3:54459886-54459905 | None:intergenic | 55.0% | |
| !!! | TTTTAGAATTGGGGGGGGGG+GGG | - | chr1_3:54460671-54460690 | Msa0125810:intron | 55.0% |
| TAGGCAGCAGACGGGAATGT+AGG | - | chr1_3:54462454-54462473 | Msa0125810:CDS | 55.0% | |
| GCCGCAACATAGGTCACTGA+TGG | + | chr1_3:54463857-54463876 | None:intergenic | 55.0% | |
| TGCAAAGCTCCAGGCCTAGA+AGG | - | chr1_3:54464383-54464402 | Msa0125810:CDS | 55.0% | |
| GCATGTGCTACAGGGTCGAC+AGG | - | chr1_3:54458164-54458183 | Msa0125810:intron | 60.0% | |
| ! | GCCTAGGCACTGCTTCAGCT+AGG | - | chr1_3:54459882-54459901 | Msa0125810:intron | 60.0% |
| ! | TTTAGAATTGGGGGGGGGGG+GGG | - | chr1_3:54460672-54460691 | Msa0125810:intron | 60.0% |
| AGTGACCTATGTTGCGGCGG+AGG | - | chr1_3:54463859-54463878 | Msa0125810:intron | 60.0% | |
| TGAGCTGGAAGGGGAACAGC+CGG | - | chr1_3:54465264-54465283 | Msa0125810:intron | 60.0% | |
| TTAGAATTGGGGGGGGGGGG+GGG | - | chr1_3:54460673-54460692 | Msa0125810:intron | 65.0% | |
| TAGAATTGGGGGGGGGGGGG+GGG | - | chr1_3:54460674-54460693 | Msa0125810:intron | 70.0% | |
| AGAATTGGGGGGGGGGGGGG+GGG | - | chr1_3:54460675-54460694 | Msa0125810:intron | 75.0% | |
| ! | GAATTGGGGGGGGGGGGGGG+GGG | - | chr1_3:54460676-54460695 | Msa0125810:intron | 80.0% |
| ! | AATTGGGGGGGGGGGGGGGG+GGG | - | chr1_3:54460677-54460696 | Msa0125810:intron | 80.0% |
| ! | ATTGGGGGGGGGGGGGGGGG+GGG | - | chr1_3:54460678-54460697 | Msa0125810:intron | 85.0% |
| ! | TTGGGGGGGGGGGGGGGGGG+GGG | - | chr1_3:54460679-54460698 | Msa0125810:intron | 90.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_3:54460680-54460699 | Msa0125810:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 54456943 | 54465564 | 54456943 | ID=Msa0125810;Name=Msa0125810 |
| chr1_3 | mRNA | 54456943 | 54465564 | 54456943 | ID=Msa0125810-mRNA-1;Parent=Msa0125810;Name=Msa0125810-mRNA-1;_AED=0.13;_eAED=0.13;_QI=96|0.90|0.91|1|1|1|23|267|878 |
| chr1_3 | exon | 54456943 | 54457311 | 54456943 | ID=Msa0125810-mRNA-1:exon:16822;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54457396 | 54457506 | 54457396 | ID=Msa0125810-mRNA-1:exon:16821;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54458423 | 54458496 | 54458423 | ID=Msa0125810-mRNA-1:exon:16820;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54458599 | 54458668 | 54458599 | ID=Msa0125810-mRNA-1:exon:16819;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54458768 | 54458815 | 54458768 | ID=Msa0125810-mRNA-1:exon:16818;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54459328 | 54459471 | 54459328 | ID=Msa0125810-mRNA-1:exon:16817;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54459564 | 54459656 | 54459564 | ID=Msa0125810-mRNA-1:exon:16816;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54459937 | 54460050 | 54459937 | ID=Msa0125810-mRNA-1:exon:16815;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54460149 | 54460328 | 54460149 | ID=Msa0125810-mRNA-1:exon:16814;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54460420 | 54460500 | 54460420 | ID=Msa0125810-mRNA-1:exon:16813;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54460590 | 54460666 | 54460590 | ID=Msa0125810-mRNA-1:exon:16812;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54460992 | 54461139 | 54460992 | ID=Msa0125810-mRNA-1:exon:16811;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54461234 | 54461318 | 54461234 | ID=Msa0125810-mRNA-1:exon:16810;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54462058 | 54462144 | 54462058 | ID=Msa0125810-mRNA-1:exon:16809;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54462409 | 54462513 | 54462409 | ID=Msa0125810-mRNA-1:exon:16808;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54462604 | 54462758 | 54462604 | ID=Msa0125810-mRNA-1:exon:16807;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54462833 | 54462931 | 54462833 | ID=Msa0125810-mRNA-1:exon:16806;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54463044 | 54463119 | 54463044 | ID=Msa0125810-mRNA-1:exon:16805;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54463869 | 54463940 | 54463869 | ID=Msa0125810-mRNA-1:exon:16804;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54464044 | 54464456 | 54464044 | ID=Msa0125810-mRNA-1:exon:16803;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54464540 | 54464661 | 54464540 | ID=Msa0125810-mRNA-1:exon:16802;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54464836 | 54464918 | 54464836 | ID=Msa0125810-mRNA-1:exon:16801;Parent=Msa0125810-mRNA-1 |
| chr1_3 | exon | 54465371 | 54465564 | 54465371 | ID=Msa0125810-mRNA-1:exon:16800;Parent=Msa0125810-mRNA-1 |
| chr1_3 | five_prime_UTR | 54465469 | 54465564 | 54465469 | ID=Msa0125810-mRNA-1:five_prime_utr;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54465371 | 54465468 | 54465371 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54464836 | 54464918 | 54464836 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54464540 | 54464661 | 54464540 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54464044 | 54464456 | 54464044 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54463869 | 54463940 | 54463869 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54463044 | 54463119 | 54463044 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54462833 | 54462931 | 54462833 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54462604 | 54462758 | 54462604 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54462409 | 54462513 | 54462409 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54462058 | 54462144 | 54462058 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54461234 | 54461318 | 54461234 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54460992 | 54461139 | 54460992 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54460590 | 54460666 | 54460590 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54460420 | 54460500 | 54460420 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54460149 | 54460328 | 54460149 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54459937 | 54460050 | 54459937 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54459564 | 54459656 | 54459564 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54459328 | 54459471 | 54459328 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54458768 | 54458815 | 54458768 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54458599 | 54458668 | 54458599 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54458423 | 54458496 | 54458423 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54457396 | 54457506 | 54457396 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | CDS | 54457210 | 54457311 | 54457210 | ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1 |
| chr1_3 | three_prime_UTR | 54456943 | 54457209 | 54456943 | ID=Msa0125810-mRNA-1:three_prime_utr;Parent=Msa0125810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
