AlfalfaGEDB | Msa0125810

M. sativa cultivar zhongmu-4 / Msa0125810

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
PFAM: PF06241.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0125810	KEH42792.1	88.320	899	40	6	1	878	1	855	0.0	1586

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0125810	sp\|Q940Y9\|POLL2_ARATH	63.515	751	237	9	148	878	84	817	0.0	946

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0125810	A0A072VLT4	88.320	899	40	6	1	878	1	855	0.0	1586

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0125810	0.809452	1.878990e-50	-8.615850e-47
Msa0025060	Msa0125810	0.801845	7.428691e-49	-8.615850e-47
Msa0025090	Msa0125810	0.813924	2.000277e-51	-8.615850e-47
Msa0026120	Msa0125810	0.818043	2.408047e-52	-8.615850e-47
Msa0030320	Msa0125810	0.910556	1.641701e-82	-8.615850e-47
Msa0046670	Msa0125810	0.807278	5.465510e-50	-8.615850e-47
Msa0055650	Msa0125810	0.801921	7.165612e-49	-8.615850e-47
Msa0060740	Msa0125810	0.831245	1.861697e-55	-8.615850e-47
Msa0077920	Msa0125810	0.967124	7.564406e-127	-8.615850e-47
Msa0086380	Msa0125810	0.815368	9.583734e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0125810	MtrunA17_Chr1g0188021	88.320	899	40	6	1	878	1	855	0.0	1586
Msa0125810	MtrunA17_Chr7g0276651	25.074	674	415	17	242	871	197	824	4.46e-52	196
Msa0125810	MtrunA17_Chr2g0277131	23.885	695	433	16	224	871	237	882	1.69e-47	182

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0125810	AT5G43745.1	63.515	751	237	9	148	878	84	817	0.0	946
Msa0125810	AT5G02940.1	60.875	754	251	10	148	878	81	813	0.0	892
Msa0125810	AT5G02940.2	59.202	777	250	11	148	878	81	836	0.0	880
Msa0125810	AT5G49960.1	23.379	663	413	17	252	868	208	821	7.32e-47	181
Msa0125810	AT5G49960.3	24.009	454	293	9	252	699	208	615	4.99e-36	145
Msa0125810	AT5G49960.2	24.009	454	293	9	252	699	208	615	6.40e-36	145

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Find 190 sgRNAs with CRISPR-Local

Find 534 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTGGTAATTGCATTG+GGG	0.616593	1_3:-54457151	Msa0125810:three_prime_UTR
AAACATACCAAAACACTTCC+AGG	0.411264	1_3:+54459929	None:intergenic
AAACCCTGTAGGGAGATGGC+AGG	0.622638	1_3:-54464650	Msa0125810:intron
AAAGACATACTAGATGCAGA+GGG	0.713150	1_3:-54458442	Msa0125810:CDS
AAATTGTCGATTCAAAATTG+GGG	0.621368	1_3:-54458774	Msa0125810:CDS
AAGGACTTATAAAGATCTAC+AGG	0.509152	1_3:-54461011	Msa0125810:CDS
AAGGAGACGTCTAATTTAAG+TGG	0.517014	1_3:+54464125	None:intergenic
AAGTGAGTGAGATTCATGGC+TGG	0.639373	1_3:+54465452	None:intergenic
AAGTGGCTTAGGTGTATTCA+AGG	0.445370	1_3:+54464142	None:intergenic
AATATCATGAAAAGAAGGCA+AGG	0.592571	1_3:+54464106	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGATCCTCGTAATAAATAAT+TGG	-	chr1_3:54456971-54456990	Msa0125810:three_prime_UTR	30.0%
TCTCCCAATTATTTATTACG+AGG	+	chr1_3:54456978-54456997	None:intergenic	30.0%
ATATTCACCCAACTCAATTA+TGG	-	chr1_3:54457207-54457226	Msa0125810:exon	30.0%
CTCAGCAATAGTTGAATAAT+GGG	+	chr1_3:54457489-54457508	None:intergenic	30.0%
TGAATCAAGAGAAAAGACTA+CGG	-	chr1_3:54457682-54457701	Msa0125810:intron	30.0%
ATATGTCATAGGAAACGATA+AGG	+	chr1_3:54457732-54457751	None:intergenic	30.0%
GTACGAATGAACAATCAAAT+CGG	+	chr1_3:54457790-54457809	None:intergenic	30.0%
TCTGAATTGGAATTAAAAGC+TGG	+	chr1_3:54457875-54457894	None:intergenic	30.0%
GCACTGAATACAAAGAAAAT+AGG	+	chr1_3:54458034-54458053	None:intergenic	30.0%
AATATCATGAAAAGAAGGCA+AGG	+	chr1_3:54458382-54458401	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	54456943	54465564	54456943	ID=Msa0125810;Name=Msa0125810
chr1_3	mRNA	54456943	54465564	54456943	ID=Msa0125810-mRNA-1;Parent=Msa0125810;Name=Msa0125810-mRNA-1;_AED=0.13;_eAED=0.13;_QI=96\|0.90\|0.91\|1\|1\|1\|23\|267\|878
chr1_3	exon	54456943	54457311	54456943	ID=Msa0125810-mRNA-1:exon:16822;Parent=Msa0125810-mRNA-1
chr1_3	exon	54457396	54457506	54457396	ID=Msa0125810-mRNA-1:exon:16821;Parent=Msa0125810-mRNA-1
chr1_3	exon	54458423	54458496	54458423	ID=Msa0125810-mRNA-1:exon:16820;Parent=Msa0125810-mRNA-1
chr1_3	exon	54458599	54458668	54458599	ID=Msa0125810-mRNA-1:exon:16819;Parent=Msa0125810-mRNA-1
chr1_3	exon	54458768	54458815	54458768	ID=Msa0125810-mRNA-1:exon:16818;Parent=Msa0125810-mRNA-1
chr1_3	exon	54459328	54459471	54459328	ID=Msa0125810-mRNA-1:exon:16817;Parent=Msa0125810-mRNA-1
chr1_3	exon	54459564	54459656	54459564	ID=Msa0125810-mRNA-1:exon:16816;Parent=Msa0125810-mRNA-1
chr1_3	exon	54459937	54460050	54459937	ID=Msa0125810-mRNA-1:exon:16815;Parent=Msa0125810-mRNA-1
chr1_3	exon	54460149	54460328	54460149	ID=Msa0125810-mRNA-1:exon:16814;Parent=Msa0125810-mRNA-1
chr1_3	exon	54460420	54460500	54460420	ID=Msa0125810-mRNA-1:exon:16813;Parent=Msa0125810-mRNA-1
chr1_3	exon	54460590	54460666	54460590	ID=Msa0125810-mRNA-1:exon:16812;Parent=Msa0125810-mRNA-1
chr1_3	exon	54460992	54461139	54460992	ID=Msa0125810-mRNA-1:exon:16811;Parent=Msa0125810-mRNA-1
chr1_3	exon	54461234	54461318	54461234	ID=Msa0125810-mRNA-1:exon:16810;Parent=Msa0125810-mRNA-1
chr1_3	exon	54462058	54462144	54462058	ID=Msa0125810-mRNA-1:exon:16809;Parent=Msa0125810-mRNA-1
chr1_3	exon	54462409	54462513	54462409	ID=Msa0125810-mRNA-1:exon:16808;Parent=Msa0125810-mRNA-1
chr1_3	exon	54462604	54462758	54462604	ID=Msa0125810-mRNA-1:exon:16807;Parent=Msa0125810-mRNA-1
chr1_3	exon	54462833	54462931	54462833	ID=Msa0125810-mRNA-1:exon:16806;Parent=Msa0125810-mRNA-1
chr1_3	exon	54463044	54463119	54463044	ID=Msa0125810-mRNA-1:exon:16805;Parent=Msa0125810-mRNA-1
chr1_3	exon	54463869	54463940	54463869	ID=Msa0125810-mRNA-1:exon:16804;Parent=Msa0125810-mRNA-1
chr1_3	exon	54464044	54464456	54464044	ID=Msa0125810-mRNA-1:exon:16803;Parent=Msa0125810-mRNA-1
chr1_3	exon	54464540	54464661	54464540	ID=Msa0125810-mRNA-1:exon:16802;Parent=Msa0125810-mRNA-1
chr1_3	exon	54464836	54464918	54464836	ID=Msa0125810-mRNA-1:exon:16801;Parent=Msa0125810-mRNA-1
chr1_3	exon	54465371	54465564	54465371	ID=Msa0125810-mRNA-1:exon:16800;Parent=Msa0125810-mRNA-1
chr1_3	five_prime_UTR	54465469	54465564	54465469	ID=Msa0125810-mRNA-1:five_prime_utr;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54465371	54465468	54465371	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54464836	54464918	54464836	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54464540	54464661	54464540	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54464044	54464456	54464044	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54463869	54463940	54463869	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54463044	54463119	54463044	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54462833	54462931	54462833	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54462604	54462758	54462604	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54462409	54462513	54462409	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54462058	54462144	54462058	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54461234	54461318	54461234	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54460992	54461139	54460992	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54460590	54460666	54460590	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54460420	54460500	54460420	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54460149	54460328	54460149	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54459937	54460050	54459937	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54459564	54459656	54459564	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54459328	54459471	54459328	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54458768	54458815	54458768	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54458599	54458668	54458599	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54458423	54458496	54458423	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54457396	54457506	54457396	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	CDS	54457210	54457311	54457210	ID=Msa0125810-mRNA-1:cds;Parent=Msa0125810-mRNA-1
chr1_3	three_prime_UTR	54456943	54457209	54456943	ID=Msa0125810-mRNA-1:three_prime_utr;Parent=Msa0125810-mRNA-1

Gene Sequence

>Msa0125810

ATGAATCTCACTCACTTCCACATGCGCACCTGTCTTCCATGGATTCCAAGGCACACATACTGCTCATCATCATCATACACCAACAACAAGAATTCCAGGAGGGTTGTGCCCTGTCATATCAGCTGGCTCAGGTCTTCACCTTCTCCATTACACAGGCGTGGTATTCGACCACACACTGAAGGGAGATGGCAGGTTGATTTTCAAAGGCCAGCTTTTAATTCCAATTCAGAACATAGTGAACATGTTCCAGAAAATGTGAGCACCAATTTCATTTGGACAGAGGAAAATAATAGTAGCTCTCAGTGCACATTGTTTCTTCCTTTAATGTTTTATGTTCAAAATTCAAATATTTTGGAGCAATGGATGCATTATAAGACTTTGCAGTGTTTATTGTTTGCTAAATCTCTCGAAATGCCGCATGTGCTACAGGGTCGACAGGCTAAAAACATGATAGAGTACTTATCGTTGTACTTTGTACTGAAACTGACACATACAAAGTTTGTTGGTCTGATGATAAATGTTGTCCAAGCAATAGTTCGATATGTGCCTCAGACTCTTGACGGAACAAGCTTGGCACTTGCTTGTGTTTCTAATGCCTTGAATACACCTAAGCCACTTAAATTAGACGTCTCCTTGCCTTCTTTTCATGATATTAGATGGAGCTTAGCGCGGTTGTTGTACTTATTTAACATACAACTCGAGAGAAATGTTGCCACATTCTTTTTGGTGCTTCTTATAGCATGCATCTCGTTTGTTTTCATTGGAGGTTTCTTGTTCTTCAAGCTAAGGAACAATAAACAATCACTGGAAGAATGTTTTTGGGAGGCATGGGCATGTCTTTGTTCATCATCTACTCATTTAAAACAACCAACACGTATTGAGCGTGTTATTGGCTTTGTTCTTGCAATATGGGGTATATTGTTTTACTCTCGTCTTCTAAGTACCATGACTGAACAATTTAGGAGTAATATGCAAAGGCTCAGGGAGGGAGCACAAATGCAAGTCATGGAGACCGATCATATCATTATTTGTGGGATGAATAGTCATCTTCCTTTCATATTAAAGCAGCTAAATAAGTATCACGAGTTTGCTGTTCGCCTAGGCACTGCTTCAGCTAGGAAACAAAGAATCCTTCTTATGTCTGATCTTCCAAGAAAACAGATTGATAGGATAGCTGACAGTATTGCTAAAGATTTGTATCATATTGATCTCCTTAGCAAGAGTTGCACCCTTAGTTTAACAAAATCATTTGAAAGAGCAGCAGCAAACAAAGCACGAGCAATAATTATACTGCCAGCAAAAGGGGATCGGTATGAAATTGACACAGATGCATTTCTTACTGTTTTAGCCCTTCAACCAATTCCAGATATGGGTTCTGTCTCCACAATAGTTGAGGTTTCAAGGTCCCAAACATGTGACTTGTTGAAGTCAATCTCGGGGTTGAAAGTATCTCCAGTAGAAGATGTTGCATCCAAATTATTTGTTCAATGCTCTCGGCAGAAAGGACTTATAAAGATCTACAGGCACTTGCTAAATTATCGAAAAAATGTGTTCAATCTTTGCAGCTTGCCTGATCTTGAAGGAATGACATATAGGCAAATAAGACATATATTTAAAGACGCTGTTGTATGTGGTCTTTACCGGAATGGGAAAATATACTTCCACCCAAATGATGATGAAATTCTGCAGATAACTGATAAAGTATTGTTCATTGGATCCCTTCAGAATACTAATAAGCCACAAGTTATAACCACAAATGGGAAAGAAGGAAAAGATGGTCATAACAATGAATTACTTGAAAAAGATTTTGATTATGCCATCGAATTGAGTAAAGTAAGACTTGCAAATATTGTAACGCGTCCTAACAGATCTGGTTCCAAGGCAGCAGACGGGAATGTAGGACCAAAAGAATGCATTCTTTTACTTGGGTGGCGACCCGATGTTGTAGAAATGATTCAAGAGTATGAGAACTATCTCGGTCCTGGAAGTGTTTTGGAAGTTTTATCAGAGACGCCATTAAATGACAGGATTATTAGGGAAAACATCGTTGGTCATAGCAAACTCAAGAATGTTCGAGTTTCTCATAGGATTGGAAACCCCATGGACTACGGCACCTTAAAGGAAACCATTTTGAATATTCAGACTTCATTGAAGAAGGAAGATATTCCTTTTTCAATTGCTTGCATATCTGACAAAGATTGGCTTCTTGGAGGTACTTACACACAAAAAATTGTACAAAATCTAGTTGCAGAAATTGTCGATTCAAAATTGGGGAAACAAATTAATAGAATAAAGCCATCAGTGACCTATGTTGCGGCGGAGGAAATATTGAGCCTTGTAACTGCTCAAGTTGCCGAGAATAGTGAATTGAATGAAGTTTGGAAAGACATACTAGATGCAGAGGGTGATGAAATATATGTGAAGGATATTAGCCTTTACATGAAAGAAGGAGAGAATCCTTCATTTTCCGAGCTTTCTGAGAGAGCATATTTAAGGAGAGAAGTAGCCATAGGTTATGTGAAGAAGAACAAGAATGTAATCAACCCAATTCCAAAGTCAGAACCCCTCTCTCTTGAATTGACTGACTCATTGATAGTCATATCTGAGCTGGAAGGGGAACAGCCGGTCATTTTGTAA

Protein sequence

>Msa0125810

MNLTHFHMRTCLPWIPRHTYCSSSSYTNNKNSRRVVPCHISWLRSSPSPLHRRGIRPHTEGRWQVDFQRPAFNSNSEHSEHVPENVSTNFIWTEENNSSSQCTLFLPLMFYVQNSNILEQWMHYKTLQCLLFAKSLEMPHVLQGRQAKNMIEYLSLYFVLKLTHTKFVGLMINVVQAIVRYVPQTLDGTSLALACVSNALNTPKPLKLDVSLPSFHDIRWSLARLLYLFNIQLERNVATFFLVLLIACISFVFIGGFLFFKLRNNKQSLEECFWEAWACLCSSSTHLKQPTRIERVIGFVLAIWGILFYSRLLSTMTEQFRSNMQRLREGAQMQVMETDHIIICGMNSHLPFILKQLNKYHEFAVRLGTASARKQRILLMSDLPRKQIDRIADSIAKDLYHIDLLSKSCTLSLTKSFERAAANKARAIIILPAKGDRYEIDTDAFLTVLALQPIPDMGSVSTIVEVSRSQTCDLLKSISGLKVSPVEDVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLCSLPDLEGMTYRQIRHIFKDAVVCGLYRNGKIYFHPNDDEILQITDKVLFIGSLQNTNKPQVITTNGKEGKDGHNNELLEKDFDYAIELSKVRLANIVTRPNRSGSKAADGNVGPKECILLLGWRPDVVEMIQEYENYLGPGSVLEVLSETPLNDRIIRENIVGHSKLKNVRVSHRIGNPMDYGTLKETILNIQTSLKKEDIPFSIACISDKDWLLGGTYTQKIVQNLVAEIVDSKLGKQINRIKPSVTYVAAEEILSLVTAQVAENSELNEVWKDILDAEGDEIYVKDISLYMKEGENPSFSELSERAYLRREVAIGYVKKNKNVINPIPKSEPLSLELTDSLIVISELEGEQPVIL*