Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0494190 | XP_003599103.1 | 97.778 | 90 | 2 | 0 | 44 | 133 | 78 | 167 | 7.62e-59 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0494190 | sp|Q9MA96|SPC3A_ARATH | 80.000 | 90 | 18 | 0 | 44 | 133 | 78 | 167 | 2.73e-51 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0494190 | G7IWJ5 | 97.778 | 90 | 2 | 0 | 44 | 133 | 78 | 167 | 3.64e-59 | 189 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021610 | Msa0494190 | 0.816954 | 4.236648e-52 | -8.615850e-47 |
| Msa0125650 | Msa0494190 | 0.801566 | 8.474563e-49 | -8.615850e-47 |
| Msa0217700 | Msa0494190 | 0.826916 | 2.086558e-54 | -8.615850e-47 |
| Msa0267790 | Msa0494190 | 0.826380 | 2.800296e-54 | -8.615850e-47 |
| Msa0296820 | Msa0494190 | 0.807459 | 5.002387e-50 | -8.615850e-47 |
| Msa0317970 | Msa0494190 | 0.812104 | 5.014056e-51 | -8.615850e-47 |
| Msa0494190 | Msa0526730 | 0.802230 | 6.190849e-49 | -8.615850e-47 |
| Msa0494190 | Msa0707250 | 0.803074 | 4.146331e-49 | -8.615850e-47 |
| Msa0494190 | Msa0742210 | 0.823584 | 1.280301e-53 | -8.615850e-47 |
| Msa0494190 | Msa0823370 | 0.821735 | 3.446987e-53 | -8.615850e-47 |
| Msa0494190 | Msa0830230 | 0.807996 | 3.846694e-50 | -8.615850e-47 |
| Msa0494190 | Msa1048220 | 0.842038 | 3.300764e-58 | -8.615850e-47 |
| Msa0494190 | Msa1089450 | 0.805326 | 1.409191e-49 | -8.615850e-47 |
| Msa0494190 | Msa1191440 | 0.813752 | 2.183473e-51 | -8.615850e-47 |
| Msa0494190 | Msa1380220 | 0.811087 | 8.342549e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0494190 | MtrunA17_Chr3g0087791 | 97.778 | 90 | 2 | 0 | 44 | 133 | 78 | 167 | 7.00e-63 | 189 |
| Msa0494190 | MtrunA17_Chr7g0273011 | 82.222 | 90 | 16 | 0 | 44 | 133 | 78 | 167 | 4.94e-54 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0494190 | AT3G05230.1 | 80.000 | 90 | 18 | 0 | 44 | 133 | 78 | 167 | 2.77e-52 | 163 |
| Msa0494190 | AT5G27430.1 | 78.889 | 90 | 19 | 0 | 44 | 133 | 78 | 167 | 2.73e-50 | 158 |
| Msa0494190 | AT3G05230.2 | 75.510 | 49 | 12 | 0 | 44 | 92 | 78 | 126 | 1.81e-22 | 86.3 |
Find 50 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTGCAGTTACGATTCT+TGG | 0.203937 | 3_4:+21811905 | Msa0494190:five_prime_UTR |
| TTCTCCTTCTGTTCAAGTTC+AGG | 0.268766 | 3_4:+21811973 | Msa0494190:five_prime_UTR |
| CTATCCAACTAACCTGATTC+AGG | 0.277503 | 3_4:-21815036 | None:intergenic |
| ATCTCACACTACTTGATAGA+TGG | 0.316862 | 3_4:+21813335 | Msa0494190:CDS |
| GAATCAGAGGAAAGAAATTC+TGG | 0.325850 | 3_4:+21815993 | Msa0494190:three_prime_UTR |
| TTTCTATAACAAAGTATAGA+AGG | 0.334992 | 3_4:+21815954 | Msa0494190:three_prime_UTR |
| ACCTGATTCAGGGGATGCTT+TGG | 0.345805 | 3_4:-21815025 | None:intergenic |
| AATACATTAACATGACAAAA+AGG | 0.346807 | 3_4:-21815911 | None:intergenic |
| GAGGAAAGAAATTCTGGTCT+TGG | 0.355990 | 3_4:+21815999 | Msa0494190:three_prime_UTR |
| AATTAGTCTTGCCAGGTTAC+CGG | 0.380111 | 3_4:+21815865 | Msa0494190:CDS |
| ATCTGTATTGTGCAGGCAAC+CGG | 0.381330 | 3_4:-21815884 | None:intergenic |
| TGTAGGTGTTGAATGTTAAC+TGG | 0.390796 | 3_4:+21812234 | Msa0494190:intron |
| TCTCAAGTTTATAGTTCATC+TGG | 0.395304 | 3_4:+21816091 | Msa0494190:three_prime_UTR |
| TAAATACCGTTTCGTTGATC+AGG | 0.395637 | 3_4:+21815676 | Msa0494190:CDS |
| GAGAAAGGAAATTGAGAGAG+AGG | 0.397022 | 3_4:-21811822 | None:intergenic |
| TCCAAAGCATCCCCTGAATC+AGG | 0.406151 | 3_4:+21815024 | Msa0494190:CDS |
| TCTATACTTTGTTATAGAAA+AGG | 0.440925 | 3_4:-21815951 | None:intergenic |
| TAAATCAAAATGCATTCATT+CGG | 0.444264 | 3_4:+21811860 | Msa0494190:five_prime_UTR |
| TTTACCTCGTCATTGCCGTT+GGG | 0.444925 | 3_4:-21812269 | None:intergenic |
| ATTTACCTCGTCATTGCCGT+TGG | 0.451824 | 3_4:-21812270 | None:intergenic |
| TGAAAGAATTCAAAGGAGAA+AGG | 0.457934 | 3_4:+21813365 | Msa0494190:CDS |
| GCTGATAAATTAGTCTTGCC+AGG | 0.458634 | 3_4:+21815858 | Msa0494190:CDS |
| TGGCATGTCATGCCGAAGAC+TGG | 0.460828 | 3_4:+21815825 | Msa0494190:CDS |
| GAAATTCTGGTCTTGGATTG+TGG | 0.467768 | 3_4:+21816006 | Msa0494190:three_prime_UTR |
| ATTGATGAGAATGAAGAGAA+AGG | 0.483108 | 3_4:-21811837 | None:intergenic |
| TGTGCAGGCAACCGGTAACC+TGG | 0.489918 | 3_4:-21815876 | None:intergenic |
| AGATTGCACGGAGAAGAATT+CGG | 0.503265 | 3_4:+21813301 | Msa0494190:CDS |
| GAAAGGAAATTGAGAGAGAG+GGG | 0.511613 | 3_4:-21811820 | None:intergenic |
| TATCCAACTAACCTGATTCA+GGG | 0.520520 | 3_4:-21815035 | None:intergenic |
| AGAAAGGAAATTGAGAGAGA+GGG | 0.528775 | 3_4:-21811821 | None:intergenic |
| GTGCTCTTTAGTCGGAATGA+TGG | 0.531330 | 3_4:-21815627 | None:intergenic |
| AACTTTGCGTGCTCTTTAGT+CGG | 0.532662 | 3_4:-21815635 | None:intergenic |
| AGGCATCATCTGTATTGTGC+AGG | 0.541458 | 3_4:-21815891 | None:intergenic |
| AGGGGTTTAAGAAGAAACGA+AGG | 0.553338 | 3_4:-21811802 | None:intergenic |
| CTTCAAAGAACTAGAATCAG+AGG | 0.553766 | 3_4:+21815980 | Msa0494190:three_prime_UTR |
| AATTTAACTTGACTCTGCAC+TGG | 0.555626 | 3_4:+21815805 | Msa0494190:CDS |
| TAAATACCTGATCAACGAAA+CGG | 0.560395 | 3_4:-21815682 | None:intergenic |
| TCTCACACTACTTGATAGAT+GGG | 0.566992 | 3_4:+21813336 | Msa0494190:CDS |
| GGTACCTGAACTTGAACAGA+AGG | 0.583896 | 3_4:-21811977 | None:intergenic |
| CGGAATGATGGCATCCCAGA+GGG | 0.592693 | 3_4:-21815615 | None:intergenic |
| ACCAAGAATCGTAACTGCAA+AGG | 0.610908 | 3_4:-21811906 | None:intergenic |
| TAAGGAAGAGACAGATTGCA+CGG | 0.626652 | 3_4:+21813289 | Msa0494190:intron |
| GTGTTTGTGAAAGAATTCAA+AGG | 0.627971 | 3_4:+21813358 | Msa0494190:CDS |
| TGAACTTGAACAGAAGGAGA+AGG | 0.629057 | 3_4:-21811971 | None:intergenic |
| AGTATCAGTGAAAGAAGCGA+TGG | 0.639149 | 3_4:-21811939 | None:intergenic |
| ATCCAACTAACCTGATTCAG+GGG | 0.645132 | 3_4:-21815034 | None:intergenic |
| GTCCAGGGAAGCAATTTGCG+CGG | 0.687286 | 3_4:+21815777 | Msa0494190:intron |
| ACAGCCCAACGGCAATGACG+AGG | 0.690378 | 3_4:+21812265 | Msa0494190:CDS |
| TGGTTTCAGAAACAGCCCAA+CGG | 0.694132 | 3_4:+21812254 | Msa0494190:CDS |
| TCGGAATGATGGCATCCCAG+AGG | 0.716922 | 3_4:-21815616 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAAAAAAATGATATAAT+TGG | - | chr3_4:21812386-21812405 | None:intergenic | 10.0% |
| !!! | ATTGAATATATTTTTTGTTA+AGG | + | chr3_4:21812624-21812643 | Msa0494190:intron | 10.0% |
| !! | ATAGTTATGTGAATATATAT+AGG | - | chr3_4:21814644-21814663 | None:intergenic | 15.0% |
| !!! | GAATATTTGAAATTTTATTG+TGG | + | chr3_4:21816052-21816071 | Msa0494190:three_prime_UTR | 15.0% |
| !! | TAAATCAAAATGCATTCATT+CGG | + | chr3_4:21811860-21811879 | Msa0494190:five_prime_UTR | 20.0% |
| !! | ACACATATAAATTTAAGAAC+GGG | - | chr3_4:21812201-21812220 | None:intergenic | 20.0% |
| !! | CACACATATAAATTTAAGAA+CGG | - | chr3_4:21812202-21812221 | None:intergenic | 20.0% |
| !!! | ATTCATCTTTCAATCTTTTT+TGG | + | chr3_4:21812298-21812317 | Msa0494190:intron | 20.0% |
| !!! | ATGTTATAAGATGTTTTCAT+AGG | + | chr3_4:21812833-21812852 | Msa0494190:intron | 20.0% |
| !! | TGCTAGAATTATATTGAAAA+GGG | + | chr3_4:21813217-21813236 | Msa0494190:intron | 20.0% |
| !! | GAATTTGGATATAATGAATA+GGG | + | chr3_4:21813410-21813429 | Msa0494190:intron | 20.0% |
| !! | AATTTGGATATAATGAATAG+GGG | + | chr3_4:21813411-21813430 | Msa0494190:intron | 20.0% |
| !!! | TTTTGTGTTAAATTGCAAAT+AGG | + | chr3_4:21813907-21813926 | Msa0494190:intron | 20.0% |
| !! | TTTGTGTTAAATTGCAAATA+GGG | + | chr3_4:21813908-21813927 | Msa0494190:intron | 20.0% |
| !! | AATAAGTTAGTTATCAGTTA+TGG | + | chr3_4:21814846-21814865 | Msa0494190:intron | 20.0% |
| !! | CAATTATGATAGGAAAAATA+TGG | - | chr3_4:21815271-21815290 | None:intergenic | 20.0% |
| !!! | TATCTATTCTCTTTAGAAAA+AGG | - | chr3_4:21815401-21815420 | None:intergenic | 20.0% |
| !! | AATACATTAACATGACAAAA+AGG | - | chr3_4:21815914-21815933 | None:intergenic | 20.0% |
| !!! | TCTATACTTTGTTATAGAAA+AGG | - | chr3_4:21815954-21815973 | None:intergenic | 20.0% |
| !! | TTTCTATAACAAAGTATAGA+AGG | + | chr3_4:21815954-21815973 | Msa0494190:three_prime_UTR | 20.0% |
| !! | TTACGACAAAAAATTAGTCT+CGG | + | chr3_4:21812061-21812080 | Msa0494190:intron | 25.0% |
| !! | TCTCAGACATTTTTATATCA+AGG | - | chr3_4:21812147-21812166 | None:intergenic | 25.0% |
| ! | GTAAACAATTACTTTGATCA+TGG | + | chr3_4:21812323-21812342 | Msa0494190:intron | 25.0% |
| ! | AATTACAGAATTAGCTAGTT+TGG | + | chr3_4:21812599-21812618 | Msa0494190:intron | 25.0% |
| !!! | TTTTTTGTTAAGGCTTTGTT+TGG | + | chr3_4:21812634-21812653 | Msa0494190:intron | 25.0% |
| !! | TCTTATTTACGTTTATCTAC+TGG | - | chr3_4:21812889-21812908 | None:intergenic | 25.0% |
| ! | TCTAATAAAAGACATATTCG+AGG | + | chr3_4:21813034-21813053 | Msa0494190:intron | 25.0% |
| ! | GTGCTAGAATTATATTGAAA+AGG | + | chr3_4:21813216-21813235 | Msa0494190:intron | 25.0% |
| ! | GGAATTTGGATATAATGAAT+AGG | + | chr3_4:21813409-21813428 | Msa0494190:intron | 25.0% |
| ! | ATTTGGATATAATGAATAGG+GGG | + | chr3_4:21813412-21813431 | Msa0494190:intron | 25.0% |
| !! | TCTGAAATTTATCTGATCAT+AGG | + | chr3_4:21813535-21813554 | Msa0494190:intron | 25.0% |
| ! | ATTTATCTGATCATAGGTTA+TGG | + | chr3_4:21813541-21813560 | Msa0494190:intron | 25.0% |
| !!! | ATGGTTGATTTTATGATTTC+TGG | + | chr3_4:21813664-21813683 | Msa0494190:intron | 25.0% |
| ! | TAATGAAATTAAGGACAAGT+AGG | - | chr3_4:21813712-21813731 | None:intergenic | 25.0% |
| ! | TGGAAGGTTTAATGAAATTA+AGG | - | chr3_4:21813721-21813740 | None:intergenic | 25.0% |
| ! | TGATCTTAATATATCTAGAC+AGG | + | chr3_4:21813786-21813805 | Msa0494190:intron | 25.0% |
| ! | GATCTTAATATATCTAGACA+GGG | + | chr3_4:21813787-21813806 | Msa0494190:intron | 25.0% |
| ! | TTGTGTTAAATTGCAAATAG+GGG | + | chr3_4:21813909-21813928 | Msa0494190:intron | 25.0% |
| !!! | AAGCTTTAAAAGTCAAGATT+TGG | + | chr3_4:21814024-21814043 | Msa0494190:intron | 25.0% |
| ! | CAACTTAGAAATAGAAATTC+AGG | + | chr3_4:21814378-21814397 | Msa0494190:intron | 25.0% |
| ! | ACATAATGATTTGAAGGTTA+GGG | - | chr3_4:21814449-21814468 | None:intergenic | 25.0% |
| ! | ATTCAGACATAATGATTTGA+AGG | - | chr3_4:21814455-21814474 | None:intergenic | 25.0% |
| !! | CTTTCATATACTTTTCAGAA+AGG | - | chr3_4:21814825-21814844 | None:intergenic | 25.0% |
| ! | AAACTTGAAATACACACATA+AGG | + | chr3_4:21815072-21815091 | Msa0494190:intron | 25.0% |
| ! | AACTTGAAATACACACATAA+GGG | + | chr3_4:21815073-21815092 | Msa0494190:intron | 25.0% |
| !! | AAACAATAAAGACAGTGTTT+TGG | - | chr3_4:21815219-21815238 | None:intergenic | 25.0% |
| ! | ATGAAGTGAACAATTATGAT+AGG | - | chr3_4:21815281-21815300 | None:intergenic | 25.0% |
| ! | TTGAATTTAAATTGCTACCA+AGG | - | chr3_4:21815306-21815325 | None:intergenic | 25.0% |
| ! | AGAAAGTCATAGTAATAGAT+TGG | + | chr3_4:21815423-21815442 | Msa0494190:intron | 25.0% |
| !!! | TTTGAAATTTTATTGTGGTG+TGG | + | chr3_4:21816057-21816076 | Msa0494190:three_prime_UTR | 25.0% |
| ATTGATGAGAATGAAGAGAA+AGG | - | chr3_4:21811840-21811859 | None:intergenic | 30.0% | |
| ATGTCTGAGAAAAAATTGTG+AGG | + | chr3_4:21812157-21812176 | Msa0494190:intron | 30.0% | |
| TGTCTGAGAAAAAATTGTGA+GGG | + | chr3_4:21812158-21812177 | Msa0494190:intron | 30.0% | |
| TTTATATGTGTGTTTGTGTG+TGG | + | chr3_4:21812210-21812229 | Msa0494190:intron | 30.0% | |
| !!! | GAACAGACATTTTGGTTTTT+TGG | + | chr3_4:21812482-21812501 | Msa0494190:intron | 30.0% |
| ATTTAGTAACGACACATTCT+AGG | - | chr3_4:21812569-21812588 | None:intergenic | 30.0% | |
| !!! | GCTGTTTTTAAAAGCTATCT+TGG | + | chr3_4:21812775-21812794 | Msa0494190:intron | 30.0% |
| AAACACTAGTGATACTGTTT+GGG | - | chr3_4:21812863-21812882 | None:intergenic | 30.0% | |
| TAAACACTAGTGATACTGTT+TGG | - | chr3_4:21812864-21812883 | None:intergenic | 30.0% | |
| TATAAGCTAAAATACCCCTA+AGG | + | chr3_4:21812911-21812930 | Msa0494190:intron | 30.0% | |
| ACTAACAACATACAACCTTA+GGG | - | chr3_4:21812929-21812948 | None:intergenic | 30.0% | |
| TACTAACAACATACAACCTT+AGG | - | chr3_4:21812930-21812949 | None:intergenic | 30.0% | |
| ACTAACCGAAGACAAATTTA+AGG | + | chr3_4:21812968-21812987 | Msa0494190:intron | 30.0% | |
| TCTGACCTTAAATTTGTCTT+CGG | - | chr3_4:21812976-21812995 | None:intergenic | 30.0% | |
| TACATAATGAAGAGAGTGAT+AGG | + | chr3_4:21813169-21813188 | Msa0494190:intron | 30.0% | |
| TTGAAAAGGGAATTTAGTGA+AGG | + | chr3_4:21813230-21813249 | Msa0494190:intron | 30.0% | |
| TTAATGATGAGAGAATCCTA+AGG | + | chr3_4:21813271-21813290 | Msa0494190:intron | 30.0% | |
| GTGTTTGTGAAAGAATTCAA+AGG | + | chr3_4:21813358-21813377 | Msa0494190:CDS | 30.0% | |
| TGAAAGAATTCAAAGGAGAA+AGG | + | chr3_4:21813365-21813384 | Msa0494190:CDS | 30.0% | |
| AATGTATGTGTATGAGAGAA+TGG | + | chr3_4:21813388-21813407 | Msa0494190:intron | 30.0% | |
| TTCTATTCTAACAGTAGAGA+AGG | - | chr3_4:21813453-21813472 | None:intergenic | 30.0% | |
| AGATCAGAACATATGTGAAT+TGG | - | chr3_4:21813483-21813502 | None:intergenic | 30.0% | |
| !! | GTTGATTTTATGATTTCTGG+AGG | + | chr3_4:21813667-21813686 | Msa0494190:intron | 30.0% |
| !! | CTTTGAAATCTCATCTCATA+TGG | - | chr3_4:21813760-21813779 | None:intergenic | 30.0% |
| ACACAAAAAAGCAAGTCAAT+CGG | - | chr3_4:21813895-21813914 | None:intergenic | 30.0% | |
| CAATAGAACAAGTATAACTC+AGG | - | chr3_4:21813939-21813958 | None:intergenic | 30.0% | |
| TGTTCTATTGACCAAAATTC+TGG | + | chr3_4:21813949-21813968 | Msa0494190:intron | 30.0% | |
| AGACATACTGATACTGTATT+AGG | + | chr3_4:21814097-21814116 | Msa0494190:intron | 30.0% | |
| GACATACTGATACTGTATTA+GGG | + | chr3_4:21814098-21814117 | Msa0494190:intron | 30.0% | |
| TTTCATCTCAAAAGCTTATC+TGG | + | chr3_4:21814243-21814262 | Msa0494190:intron | 30.0% | |
| !! | TTTGACTTGGTGATTACTTA+TGG | + | chr3_4:21814332-21814351 | Msa0494190:intron | 30.0% |
| TAGAAATAGAAATTCAGGTC+TGG | + | chr3_4:21814383-21814402 | Msa0494190:intron | 30.0% | |
| GACATAATGATTTGAAGGTT+AGG | - | chr3_4:21814450-21814469 | None:intergenic | 30.0% | |
| AGAAATTCTGTTAACTACAG+GGG | - | chr3_4:21814488-21814507 | None:intergenic | 30.0% | |
| CAGAAATTCTGTTAACTACA+GGG | - | chr3_4:21814489-21814508 | None:intergenic | 30.0% | |
| ATCAAAGCAAAGGACTATTT+GGG | + | chr3_4:21814560-21814579 | Msa0494190:intron | 30.0% | |
| CGACAAAGAAGTGAATAAAT+GGG | - | chr3_4:21814613-21814632 | None:intergenic | 30.0% | |
| !!! | TAGGGAAGCATTATGAATTT+TGG | - | chr3_4:21814671-21814690 | None:intergenic | 30.0% |
| ! | TTTTGTGTTCCATGTGAAAA+GGG | - | chr3_4:21814761-21814780 | None:intergenic | 30.0% |
| AGTTAGTTATCAGTTATGGA+TGG | + | chr3_4:21814850-21814869 | Msa0494190:intron | 30.0% | |
| GTTAGTTATCAGTTATGGAT+GGG | + | chr3_4:21814851-21814870 | Msa0494190:intron | 30.0% | |
| CGTGAATTTAATACACACTT+TGG | + | chr3_4:21814904-21814923 | Msa0494190:intron | 30.0% | |
| ! | CTTCACATTCTTAGTGTTTT+GGG | + | chr3_4:21814927-21814946 | Msa0494190:intron | 30.0% |
| ! | TTCACATTCTTAGTGTTTTG+GGG | + | chr3_4:21814928-21814947 | Msa0494190:intron | 30.0% |
| TTCTGTTGAAATACACACAT+AGG | + | chr3_4:21815116-21815135 | Msa0494190:intron | 30.0% | |
| TCTGTTGAAATACACACATA+GGG | + | chr3_4:21815117-21815136 | Msa0494190:intron | 30.0% | |
| AAAAATATGGAAGACAAGCT+AGG | - | chr3_4:21815258-21815277 | None:intergenic | 30.0% | |
| ! | AGCTGGCAAGTTTAAAATTA+CGG | - | chr3_4:21815378-21815397 | None:intergenic | 30.0% |
| AGTCATAGTAATAGATTGGT+TGG | + | chr3_4:21815427-21815446 | Msa0494190:intron | 30.0% | |
| ATCTCAAATTTCCATTGTTG+AGG | + | chr3_4:21815453-21815472 | Msa0494190:intron | 30.0% | |
| ! | AATTTTACAGATATCCCTCT+GGG | + | chr3_4:21815601-21815620 | Msa0494190:intron | 30.0% |
| TAAATACCTGATCAACGAAA+CGG | - | chr3_4:21815685-21815704 | None:intergenic | 30.0% | |
| TCTCAAGTTTATAGTTCATC+TGG | + | chr3_4:21816091-21816110 | Msa0494190:three_prime_UTR | 30.0% | |
| AGGGAGTTTCAAAAACTAAT+AGG | - | chr3_4:21816123-21816142 | None:intergenic | 30.0% | |
| AGAAAGGAAATTGAGAGAGA+GGG | - | chr3_4:21811824-21811843 | None:intergenic | 35.0% | |
| GATATAGAGATAGAGAGAGA+GGG | - | chr3_4:21812008-21812027 | None:intergenic | 35.0% | |
| TGATATAGAGATAGAGAGAG+AGG | - | chr3_4:21812009-21812028 | None:intergenic | 35.0% | |
| !! | TGTAGGTGTTGAATGTTAAC+TGG | + | chr3_4:21812234-21812253 | Msa0494190:intron | 35.0% |
| ! | TATCGAGTGAACAGACATTT+TGG | + | chr3_4:21812474-21812493 | Msa0494190:intron | 35.0% |
| !! | TTTTTGGTCCTGAGATAAGT+CGG | + | chr3_4:21812498-21812517 | Msa0494190:intron | 35.0% |
| CTAACAACATACAACCTTAG+GGG | - | chr3_4:21812928-21812947 | None:intergenic | 35.0% | |
| GCATTTAGAGATTAGTGACA+CGG | + | chr3_4:21813108-21813127 | Msa0494190:intron | 35.0% | |
| ATAATGAAGAGAGTGATAGG+TGG | + | chr3_4:21813172-21813191 | Msa0494190:intron | 35.0% | |
| TTAGTGAAGGAGAAATAGAG+AGG | + | chr3_4:21813243-21813262 | Msa0494190:intron | 35.0% | |
| ATCTCACACTACTTGATAGA+TGG | + | chr3_4:21813335-21813354 | Msa0494190:CDS | 35.0% | |
| TCTCACACTACTTGATAGAT+GGG | + | chr3_4:21813336-21813355 | Msa0494190:CDS | 35.0% | |
| GTGTATGAGAGAATGGAATT+TGG | + | chr3_4:21813395-21813414 | Msa0494190:intron | 35.0% | |
| TACATACAGGTCTAAATGGA+AGG | - | chr3_4:21813737-21813756 | None:intergenic | 35.0% | |
| ATGGTACATACAGGTCTAAA+TGG | - | chr3_4:21813741-21813760 | None:intergenic | 35.0% | |
| TCATCTCATATGGTACATAC+AGG | - | chr3_4:21813750-21813769 | None:intergenic | 35.0% | |
| ! | TAAGATCCAAACTCCTTTTC+TGG | + | chr3_4:21813847-21813866 | Msa0494190:intron | 35.0% |
| ! | AAGATCCAAACTCCTTTTCT+GGG | + | chr3_4:21813848-21813867 | Msa0494190:intron | 35.0% |
| ACAAAAAAGCAAGTCAATCG+GGG | - | chr3_4:21813893-21813912 | None:intergenic | 35.0% | |
| CACAAAAAAGCAAGTCAATC+GGG | - | chr3_4:21813894-21813913 | None:intergenic | 35.0% | |
| AGAACAAGTATAACTCAGGT+TGG | - | chr3_4:21813935-21813954 | None:intergenic | 35.0% | |
| ! | GACACTGTATACCAGAATTT+TGG | - | chr3_4:21813963-21813982 | None:intergenic | 35.0% |
| AGAGTAAGATACACAGAATC+TGG | - | chr3_4:21813998-21814017 | None:intergenic | 35.0% | |
| GTCTGGTATAGCAATAGTTT+GGG | + | chr3_4:21814400-21814419 | Msa0494190:intron | 35.0% | |
| ATAGCAATAGTTTGGGTGAT+TGG | + | chr3_4:21814407-21814426 | Msa0494190:intron | 35.0% | |
| GCAGAAATTCTGTTAACTAC+AGG | - | chr3_4:21814490-21814509 | None:intergenic | 35.0% | |
| CTGCATAAGTAAGCACAAAA+TGG | + | chr3_4:21814506-21814525 | Msa0494190:intron | 35.0% | |
| ! | TCTGAGTCGAAGTAATGTTT+TGG | + | chr3_4:21814536-21814555 | Msa0494190:intron | 35.0% |
| !!! | ATGTTTTGGCATCAAAGCAA+AGG | + | chr3_4:21814550-21814569 | Msa0494190:intron | 35.0% |
| CATCAAAGCAAAGGACTATT+TGG | + | chr3_4:21814559-21814578 | Msa0494190:intron | 35.0% | |
| GCGACAAAGAAGTGAATAAA+TGG | - | chr3_4:21814614-21814633 | None:intergenic | 35.0% | |
| TTATTCACTTCTTTGTCGCT+TGG | + | chr3_4:21814615-21814634 | Msa0494190:intron | 35.0% | |
| GTAAACCTGCATGAATAGAA+AGG | - | chr3_4:21814707-21814726 | None:intergenic | 35.0% | |
| ! | ATTTACAGACCCTTTTCACA+TGG | + | chr3_4:21814749-21814768 | Msa0494190:intron | 35.0% |
| ! | GTTTTGTGTTCCATGTGAAA+AGG | - | chr3_4:21814762-21814781 | None:intergenic | 35.0% |
| TTTCACATGGAACACAAAAC+AGG | + | chr3_4:21814762-21814781 | Msa0494190:intron | 35.0% | |
| GCAAATGCAAATTGAAGTCA+CGG | - | chr3_4:21814789-21814808 | None:intergenic | 35.0% | |
| TCAGTTATGGATGGGAATTA+TGG | + | chr3_4:21814859-21814878 | Msa0494190:intron | 35.0% | |
| ! | GCTTCACATTCTTAGTGTTT+TGG | + | chr3_4:21814926-21814945 | Msa0494190:intron | 35.0% |
| TATCCAACTAACCTGATTCA+GGG | - | chr3_4:21815038-21815057 | None:intergenic | 35.0% | |
| GAAAATTGTGAGAGAAACCA+GGG | - | chr3_4:21815154-21815173 | None:intergenic | 35.0% | |
| TGAAAATTGTGAGAGAAACC+AGG | - | chr3_4:21815155-21815174 | None:intergenic | 35.0% | |
| AATTGTTCACTTCATCTCCT+TGG | + | chr3_4:21815286-21815305 | Msa0494190:intron | 35.0% | |
| ! | GCTGGCAAGTTTAAAATTAC+GGG | - | chr3_4:21815377-21815396 | None:intergenic | 35.0% |
| ! | TTCTCTTTAGAAAAAGGAGC+TGG | - | chr3_4:21815395-21815414 | None:intergenic | 35.0% |
| ! | CATAGTAATAGATTGGTTGG+TGG | + | chr3_4:21815430-21815449 | Msa0494190:intron | 35.0% |
| TCAAATTTCCATTGTTGAGG+TGG | + | chr3_4:21815456-21815475 | Msa0494190:intron | 35.0% | |
| ! | CAATTTTACAGATATCCCTC+TGG | + | chr3_4:21815600-21815619 | Msa0494190:intron | 35.0% |
| TAAATACCGTTTCGTTGATC+AGG | + | chr3_4:21815676-21815695 | Msa0494190:CDS | 35.0% | |
| CACACAAAATGGCATGATTA+AGG | - | chr3_4:21815758-21815777 | None:intergenic | 35.0% | |
| !! | AATTTAACTTGACTCTGCAC+TGG | + | chr3_4:21815805-21815824 | Msa0494190:CDS | 35.0% |
| CTTCAAAGAACTAGAATCAG+AGG | + | chr3_4:21815980-21815999 | Msa0494190:three_prime_UTR | 35.0% | |
| GAATCAGAGGAAAGAAATTC+TGG | + | chr3_4:21815993-21816012 | Msa0494190:three_prime_UTR | 35.0% | |
| AGGGGTTTAAGAAGAAACGA+AGG | - | chr3_4:21811805-21811824 | None:intergenic | 40.0% | |
| GAAAGGAAATTGAGAGAGAG+GGG | - | chr3_4:21811823-21811842 | None:intergenic | 40.0% | |
| GAGAAAGGAAATTGAGAGAG+AGG | - | chr3_4:21811825-21811844 | None:intergenic | 40.0% | |
| ACCTTTGCAGTTACGATTCT+TGG | + | chr3_4:21811905-21811924 | Msa0494190:five_prime_UTR | 40.0% | |
| ACCAAGAATCGTAACTGCAA+AGG | - | chr3_4:21811909-21811928 | None:intergenic | 40.0% | |
| AGTATCAGTGAAAGAAGCGA+TGG | - | chr3_4:21811942-21811961 | None:intergenic | 40.0% | |
| TGAACTTGAACAGAAGGAGA+AGG | - | chr3_4:21811974-21811993 | None:intergenic | 40.0% | |
| ! | TTCTCCTTCTGTTCAAGTTC+AGG | + | chr3_4:21811973-21811992 | Msa0494190:five_prime_UTR | 40.0% |
| ! | ACTCGCTCTCAATTTTCTCT+CGG | + | chr3_4:21812028-21812047 | Msa0494190:intron | 40.0% |
| ! | TCTCGGACATTTTTATACCG+AGG | + | chr3_4:21812078-21812097 | Msa0494190:intron | 40.0% |
| ATCAGACACTAATTCGTCCT+CGG | - | chr3_4:21812098-21812117 | None:intergenic | 40.0% | |
| ATCAGTGTCGTGTCATGTTT+CGG | + | chr3_4:21812419-21812438 | Msa0494190:intron | 40.0% | |
| TAAGGAAGAGACAGATTGCA+CGG | + | chr3_4:21813289-21813308 | Msa0494190:intron | 40.0% | |
| AGATTGCACGGAGAAGAATT+CGG | + | chr3_4:21813301-21813320 | Msa0494190:CDS | 40.0% | |
| TCCATCATAAACCCTCACAT+AGG | + | chr3_4:21813570-21813589 | Msa0494190:intron | 40.0% | |
| ACCTATGTGAGGGTTTATGA+TGG | - | chr3_4:21813574-21813593 | None:intergenic | 40.0% | |
| CAACAAAGCAACCTATGTGA+GGG | - | chr3_4:21813584-21813603 | None:intergenic | 40.0% | |
| ACAACAAAGCAACCTATGTG+AGG | - | chr3_4:21813585-21813604 | None:intergenic | 40.0% | |
| ATAGTCAACCTATAGCTGAG+CGG | + | chr3_4:21813607-21813626 | Msa0494190:intron | 40.0% | |
| TCAACCATAACCACTCAGTT+AGG | - | chr3_4:21813652-21813671 | None:intergenic | 40.0% | |
| ! | GAGGCTTGCTTAATTTCTGA+AGG | + | chr3_4:21813686-21813705 | Msa0494190:intron | 40.0% |
| ATAGAAGTCACACCCAGAAA+AGG | - | chr3_4:21813863-21813882 | None:intergenic | 40.0% | |
| CAAAAAAGCAAGTCAATCGG+GGG | - | chr3_4:21813892-21813911 | None:intergenic | 40.0% | |
| CAGAATCTGGTAAGACCAAA+GGG | - | chr3_4:21813985-21814004 | None:intergenic | 40.0% | |
| ACAGAATCTGGTAAGACCAA+AGG | - | chr3_4:21813986-21814005 | None:intergenic | 40.0% | |
| ACCTCTGCTGTCTTAATCTT+AGG | + | chr3_4:21814272-21814291 | Msa0494190:intron | 40.0% | |
| TATAGACCACTTGCACATCA+CGG | + | chr3_4:21814301-21814320 | Msa0494190:intron | 40.0% | |
| ! | CTTGGTGATTACTTATGGCT+TGG | + | chr3_4:21814337-21814356 | Msa0494190:intron | 40.0% |
| GGTCTGGTATAGCAATAGTT+TGG | + | chr3_4:21814399-21814418 | Msa0494190:intron | 40.0% | |
| AAGCAAAGGACTATTTGGGT+AGG | + | chr3_4:21814564-21814583 | Msa0494190:intron | 40.0% | |
| AAAGGCTCTCACTTCAGATA+GGG | - | chr3_4:21814689-21814708 | None:intergenic | 40.0% | |
| AAGAAGCAAAACTAAGTCCG+TGG | - | chr3_4:21814958-21814977 | None:intergenic | 40.0% | |
| ! | TGCTTCTTTTCTATGCTTGC+AGG | + | chr3_4:21814970-21814989 | Msa0494190:intron | 40.0% |
| ATCCAACTAACCTGATTCAG+GGG | - | chr3_4:21815037-21815056 | None:intergenic | 40.0% | |
| CTATCCAACTAACCTGATTC+AGG | - | chr3_4:21815039-21815058 | None:intergenic | 40.0% | |
| AGAGAAACCAGGGCAATAAA+CGG | - | chr3_4:21815144-21815163 | None:intergenic | 40.0% | |
| AACTTTGCGTGCTCTTTAGT+CGG | - | chr3_4:21815638-21815657 | None:intergenic | 40.0% | |
| ! | GCAAACATTTTGCCAGTCTT+CGG | - | chr3_4:21815840-21815859 | None:intergenic | 40.0% |
| !! | GCTGATAAATTAGTCTTGCC+AGG | + | chr3_4:21815858-21815877 | Msa0494190:CDS | 40.0% |
| !! | AATTAGTCTTGCCAGGTTAC+CGG | + | chr3_4:21815865-21815884 | Msa0494190:CDS | 40.0% |
| GAGGAAAGAAATTCTGGTCT+TGG | + | chr3_4:21815999-21816018 | Msa0494190:three_prime_UTR | 40.0% | |
| !! | GAAATTCTGGTCTTGGATTG+TGG | + | chr3_4:21816006-21816025 | Msa0494190:three_prime_UTR | 40.0% |
| GGTACCTGAACTTGAACAGA+AGG | - | chr3_4:21811980-21811999 | None:intergenic | 45.0% | |
| GTGTGTTTGTGTGTGGATGT+AGG | + | chr3_4:21812217-21812236 | Msa0494190:intron | 45.0% | |
| TGGTTTCAGAAACAGCCCAA+CGG | + | chr3_4:21812254-21812273 | Msa0494190:CDS | 45.0% | |
| TTTACCTCGTCATTGCCGTT+GGG | - | chr3_4:21812272-21812291 | None:intergenic | 45.0% | |
| ATTTACCTCGTCATTGCCGT+TGG | - | chr3_4:21812273-21812292 | None:intergenic | 45.0% | |
| ! | GACAATGACCGACTTATCTC+AGG | - | chr3_4:21812509-21812528 | None:intergenic | 45.0% |
| GTGCAATCTGTCTCTTCCTT+AGG | - | chr3_4:21813290-21813309 | None:intergenic | 45.0% | |
| TCACACCCAGAAAAGGAGTT+TGG | - | chr3_4:21813856-21813875 | None:intergenic | 45.0% | |
| TCTGGTATACAGTGTCCCTT+TGG | + | chr3_4:21813967-21813986 | Msa0494190:intron | 45.0% | |
| ATAGCTCAGTCTGGATGGTT+AGG | - | chr3_4:21814051-21814070 | None:intergenic | 45.0% | |
| TATACTGCACCATTGACCTC+AGG | + | chr3_4:21814068-21814087 | Msa0494190:intron | 45.0% | |
| GCCTAAGATTAAGACAGCAG+AGG | - | chr3_4:21814276-21814295 | None:intergenic | 45.0% | |
| ATAGACCACTTGCACATCAC+GGG | + | chr3_4:21814302-21814321 | Msa0494190:intron | 45.0% | |
| ! | CACGGGTTTCTTGTTTGACT+TGG | + | chr3_4:21814319-21814338 | Msa0494190:intron | 45.0% |
| GAAAGGCTCTCACTTCAGAT+AGG | - | chr3_4:21814690-21814709 | None:intergenic | 45.0% | |
| GAGAGCCTTTCTATTCATGC+AGG | + | chr3_4:21814699-21814718 | Msa0494190:intron | 45.0% | |
| ATCCCCTGAATCAGGTTAGT+TGG | + | chr3_4:21815032-21815051 | Msa0494190:intron | 45.0% | |
| GAGAAACCAGGGCAATAAAC+GGG | - | chr3_4:21815143-21815162 | None:intergenic | 45.0% | |
| GCGAAGACACATCTATCTGA+GGG | - | chr3_4:21815518-21815537 | None:intergenic | 45.0% | |
| TGCGAAGACACATCTATCTG+AGG | - | chr3_4:21815519-21815538 | None:intergenic | 45.0% | |
| GTGCTCTTTAGTCGGAATGA+TGG | - | chr3_4:21815630-21815649 | None:intergenic | 45.0% | |
| !!! | TCATGCCATTTTGTGTGTCC+AGG | + | chr3_4:21815761-21815780 | Msa0494190:intron | 45.0% |
| !!! | CATGCCATTTTGTGTGTCCA+GGG | + | chr3_4:21815762-21815781 | Msa0494190:intron | 45.0% |
| ATCTGTATTGTGCAGGCAAC+CGG | - | chr3_4:21815887-21815906 | None:intergenic | 45.0% | |
| AGGCATCATCTGTATTGTGC+AGG | - | chr3_4:21815894-21815913 | None:intergenic | 45.0% | |
| AGATAGAGAGAGAGGGAGAG+AGG | - | chr3_4:21812001-21812020 | None:intergenic | 50.0% | |
| GTCTGACACTGACACGACAT+TGG | + | chr3_4:21812345-21812364 | Msa0494190:intron | 50.0% | |
| GGACATTTCCGCTCAGCTAT+AGG | - | chr3_4:21813618-21813637 | None:intergenic | 50.0% | |
| ACTCAGTTAGGCGCCACAAA+GGG | - | chr3_4:21813640-21813659 | None:intergenic | 50.0% | |
| GCAGTATAGCTCAGTCTGGA+TGG | - | chr3_4:21814056-21814075 | None:intergenic | 50.0% | |
| TGGTGCAGTATAGCTCAGTC+TGG | - | chr3_4:21814060-21814079 | None:intergenic | 50.0% | |
| TCTGCGAAACCTGAGGTCAA+TGG | - | chr3_4:21814080-21814099 | None:intergenic | 50.0% | |
| CAGTATGTCTGCGAAACCTG+AGG | - | chr3_4:21814087-21814106 | None:intergenic | 50.0% | |
| AGAAACCCGTGATGTGCAAG+TGG | - | chr3_4:21814310-21814329 | None:intergenic | 50.0% | |
| !!! | TAGTGTTTTGGGGCTGTCCA+CGG | + | chr3_4:21814938-21814957 | Msa0494190:intron | 50.0% |
| ! | TCCAAAGCATCCCCTGAATC+AGG | + | chr3_4:21815024-21815043 | Msa0494190:CDS | 50.0% |
| ACCTGATTCAGGGGATGCTT+TGG | - | chr3_4:21815028-21815047 | None:intergenic | 50.0% | |
| TGAAGCTGCCACCTCAACAA+TGG | - | chr3_4:21815467-21815486 | None:intergenic | 50.0% | |
| GCTTCCCTGGACACACAAAA+TGG | - | chr3_4:21815769-21815788 | None:intergenic | 50.0% | |
| GAGCGGAAATGTCCCCTTTG+TGG | + | chr3_4:21813624-21813643 | Msa0494190:intron | 55.0% | |
| CTCAGTTAGGCGCCACAAAG+GGG | - | chr3_4:21813639-21813658 | None:intergenic | 55.0% | |
| CACTCAGTTAGGCGCCACAA+AGG | - | chr3_4:21813641-21813660 | None:intergenic | 55.0% | |
| CTTTGTGGCGCCTAACTGAG+TGG | + | chr3_4:21813639-21813658 | Msa0494190:intron | 55.0% | |
| GGCGCCTAACTGAGTGGTTA+TGG | + | chr3_4:21813645-21813664 | Msa0494190:intron | 55.0% | |
| ATAGGGCCCGTTTATTGCCC+TGG | + | chr3_4:21815134-21815153 | Msa0494190:intron | 55.0% | |
| CGGAATGATGGCATCCCAGA+GGG | - | chr3_4:21815618-21815637 | None:intergenic | 55.0% | |
| TCGGAATGATGGCATCCCAG+AGG | - | chr3_4:21815619-21815638 | None:intergenic | 55.0% | |
| GTCCAGGGAAGCAATTTGCG+CGG | + | chr3_4:21815777-21815796 | Msa0494190:intron | 55.0% | |
| TTCCGCGCAAATTGCTTCCC+TGG | - | chr3_4:21815782-21815801 | None:intergenic | 55.0% | |
| TGGCATGTCATGCCGAAGAC+TGG | + | chr3_4:21815825-21815844 | Msa0494190:CDS | 55.0% | |
| ACAGCCCAACGGCAATGACG+AGG | + | chr3_4:21812265-21812284 | Msa0494190:CDS | 60.0% | |
| TGTGCAGGCAACCGGTAACC+TGG | - | chr3_4:21815879-21815898 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 21811792 | 21816160 | 21811792 | ID=Msa0494190;Name=Msa0494190 |
| chr3_4 | mRNA | 21811792 | 21816160 | 21811792 | ID=Msa0494190-mRNA-1;Parent=Msa0494190;Name=Msa0494190-mRNA-1;_AED=0.11;_eAED=0.11;_QI=210|0.6|0.83|0.83|1|1|6|252|133 |
| chr3_4 | exon | 21811792 | 21811994 | 21811792 | ID=Msa0494190-mRNA-1:exon:5508;Parent=Msa0494190-mRNA-1 |
| chr3_4 | exon | 21812239 | 21812286 | 21812239 | ID=Msa0494190-mRNA-1:exon:5509;Parent=Msa0494190-mRNA-1 |
| chr3_4 | exon | 21813297 | 21813390 | 21813297 | ID=Msa0494190-mRNA-1:exon:5510;Parent=Msa0494190-mRNA-1 |
| chr3_4 | exon | 21814992 | 21815045 | 21814992 | ID=Msa0494190-mRNA-1:exon:5511;Parent=Msa0494190-mRNA-1 |
| chr3_4 | exon | 21815611 | 21815697 | 21815611 | ID=Msa0494190-mRNA-1:exon:5512;Parent=Msa0494190-mRNA-1 |
| chr3_4 | exon | 21815783 | 21816160 | 21815783 | ID=Msa0494190-mRNA-1:exon:5513;Parent=Msa0494190-mRNA-1 |
| chr3_4 | five_prime_UTR | 21811792 | 21811994 | 21811792 | ID=Msa0494190-mRNA-1:five_prime_utr;Parent=Msa0494190-mRNA-1 |
| chr3_4 | five_prime_UTR | 21812239 | 21812245 | 21812239 | ID=Msa0494190-mRNA-1:five_prime_utr;Parent=Msa0494190-mRNA-1 |
| chr3_4 | CDS | 21812246 | 21812286 | 21812246 | ID=Msa0494190-mRNA-1:cds;Parent=Msa0494190-mRNA-1 |
| chr3_4 | CDS | 21813297 | 21813390 | 21813297 | ID=Msa0494190-mRNA-1:cds;Parent=Msa0494190-mRNA-1 |
| chr3_4 | CDS | 21814992 | 21815045 | 21814992 | ID=Msa0494190-mRNA-1:cds;Parent=Msa0494190-mRNA-1 |
| chr3_4 | CDS | 21815611 | 21815697 | 21815611 | ID=Msa0494190-mRNA-1:cds;Parent=Msa0494190-mRNA-1 |
| chr3_4 | CDS | 21815783 | 21815908 | 21815783 | ID=Msa0494190-mRNA-1:cds;Parent=Msa0494190-mRNA-1 |
| chr3_4 | three_prime_UTR | 21815909 | 21816160 | 21815909 | ID=Msa0494190-mRNA-1:three_prime_utr;Parent=Msa0494190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
