Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1191440 | XP_003627594.1 | 97.569 | 288 | 6 | 1 | 1 | 288 | 1 | 287 | 0.0 | 576 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1191440 | sp|Q9M2E2|SDR1_ARATH | 56.757 | 296 | 120 | 3 | 1 | 288 | 1 | 296 | 9.10e-116 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa1191440 | 0.868096 | 8.412776e-66 | -8.615850e-47 |
| Msa0090380 | Msa1191440 | 0.807012 | 6.223395e-50 | -8.615850e-47 |
| Msa0105410 | Msa1191440 | 0.805715 | 1.167903e-49 | -8.615850e-47 |
| Msa0613340 | Msa1191440 | 0.806174 | 9.351552e-50 | -8.615850e-47 |
| Msa0631320 | Msa1191440 | 0.834912 | 2.277330e-56 | -8.615850e-47 |
| Msa0653830 | Msa1191440 | 0.821074 | 4.897364e-53 | -8.615850e-47 |
| Msa0667030 | Msa1191440 | 0.801143 | 1.034504e-48 | -8.615850e-47 |
| Msa0679670 | Msa1191440 | 0.805770 | 1.137035e-49 | -8.615850e-47 |
| Msa0711150 | Msa1191440 | 0.803657 | 3.140157e-49 | -8.615850e-47 |
| Msa0744640 | Msa1191440 | 0.822502 | 2.288502e-53 | -8.615850e-47 |
| Msa0802240 | Msa1191440 | 0.805864 | 1.086526e-49 | -8.615850e-47 |
| Msa0812530 | Msa1191440 | 0.808590 | 2.873481e-50 | -8.615850e-47 |
| Msa0822500 | Msa1191440 | 0.802144 | 6.449524e-49 | -8.615850e-47 |
| Msa0841730 | Msa1191440 | 0.822393 | 2.426381e-53 | -8.615850e-47 |
| Msa0190930 | Msa1191440 | 0.814527 | 1.472203e-51 | -8.615850e-47 |
| Msa0233250 | Msa1191440 | 0.826671 | 2.386911e-54 | -8.615850e-47 |
| Msa0233970 | Msa1191440 | 0.819559 | 1.090004e-52 | -8.615850e-47 |
| Msa0389210 | Msa1191440 | 0.837559 | 4.840855e-57 | -8.615850e-47 |
| Msa0481400 | Msa1191440 | 0.919648 | 3.460058e-87 | -8.615850e-47 |
| Msa1029050 | Msa1191440 | 0.807018 | 6.203388e-50 | -8.615850e-47 |
| Msa1034450 | Msa1191440 | 0.803266 | 3.783205e-49 | -8.615850e-47 |
| Msa1059470 | Msa1191440 | 0.809210 | 2.117514e-50 | -8.615850e-47 |
| Msa1062040 | Msa1191440 | 0.802695 | 4.965754e-49 | -8.615850e-47 |
| Msa1074200 | Msa1191440 | 0.802589 | 5.221976e-49 | -8.615850e-47 |
| Msa0272400 | Msa1191440 | 0.824355 | 8.441486e-54 | -8.615850e-47 |
| Msa0293720 | Msa1191440 | 0.809642 | 1.710578e-50 | -8.615850e-47 |
| Msa0311500 | Msa1191440 | 0.811950 | 5.417733e-51 | -8.615850e-47 |
| Msa0311510 | Msa1191440 | 0.812321 | 4.495665e-51 | -8.615850e-47 |
| Msa0312590 | Msa1191440 | 0.819956 | 8.844717e-53 | -8.615850e-47 |
| Msa0332190 | Msa1191440 | 0.824603 | 7.380102e-54 | -8.615850e-47 |
| Msa1107200 | Msa1191440 | 0.806627 | 7.504578e-50 | -8.615850e-47 |
| Msa1109090 | Msa1191440 | 0.800968 | 1.123654e-48 | -8.615850e-47 |
| Msa1159170 | Msa1191440 | 0.813355 | 2.669074e-51 | -8.615850e-47 |
| Msa1180720 | Msa1191440 | 0.808978 | 2.374123e-50 | -8.615850e-47 |
| Msa1184690 | Msa1191440 | 0.824301 | 8.691504e-54 | -8.615850e-47 |
| Msa1191440 | Msa1220920 | 0.800169 | 1.635122e-48 | -8.615850e-47 |
| Msa1191440 | Msa1231710 | 0.803818 | 2.907582e-49 | -8.615850e-47 |
| Msa1191440 | Msa1231840 | 0.805275 | 1.444167e-49 | -8.615850e-47 |
| Msa1191440 | Msa1238600 | 0.814048 | 1.878694e-51 | -8.615850e-47 |
| Msa1191440 | Msa1270050 | 0.977403 | 1.035174e-143 | -8.615850e-47 |
| Msa1191440 | Msa1277780 | 0.802338 | 5.881257e-49 | -8.615850e-47 |
| Msa1191440 | Msa1307160 | 0.803649 | 3.152067e-49 | -8.615850e-47 |
| Msa1191440 | Msa1312440 | 0.805469 | 1.315033e-49 | -8.615850e-47 |
| Msa1191440 | Msa1355890 | 0.806221 | 9.137951e-50 | -8.615850e-47 |
| Msa1191440 | Msa1380220 | 0.813411 | 2.594598e-51 | -8.615850e-47 |
| Msa1191440 | Msa1386000 | 0.824114 | 9.617839e-54 | -8.615850e-47 |
| Msa1191440 | Msa1433410 | 0.803582 | 3.255020e-49 | -8.615850e-47 |
| Msa1191440 | Msa1454450 | 0.802077 | 6.657005e-49 | -8.615850e-47 |
| Msa0494190 | Msa1191440 | 0.813752 | 2.183473e-51 | -8.615850e-47 |
| Msa0532230 | Msa1191440 | 0.803438 | 3.486425e-49 | -8.615850e-47 |
| Msa0534870 | Msa1191440 | 0.830278 | 3.213692e-55 | -8.615850e-47 |
| Msa0545050 | Msa1191440 | 0.806603 | 7.591485e-50 | -8.615850e-47 |
| Msa0574930 | Msa1191440 | 0.816580 | 5.138909e-52 | -8.615850e-47 |
| Msa0600590 | Msa1191440 | 0.827178 | 1.806005e-54 | -8.615850e-47 |
| Msa0870510 | Msa1191440 | 0.828667 | 7.916483e-55 | -8.615850e-47 |
| Msa0930740 | Msa1191440 | 0.858113 | 1.029147e-62 | -8.615850e-47 |
| Msa0944610 | Msa1191440 | 0.802773 | 4.784677e-49 | -8.615850e-47 |
| Msa0945130 | Msa1191440 | 0.814228 | 1.713965e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1191440 | MtrunA17_Chr8g0349741 | 97.569 | 288 | 6 | 1 | 1 | 288 | 1 | 287 | 0.0 | 576 |
| Msa1191440 | MtrunA17_Chr7g0247011 | 66.667 | 288 | 94 | 2 | 1 | 288 | 1 | 286 | 3.29e-139 | 394 |
| Msa1191440 | MtrunA17_Chr7g0247031 | 64.561 | 285 | 96 | 4 | 6 | 288 | 7 | 288 | 9.48e-128 | 365 |
| Msa1191440 | MtrunA17_Chr8g0349781 | 58.333 | 300 | 111 | 4 | 1 | 288 | 1 | 298 | 1.47e-121 | 349 |
| Msa1191440 | MtrunA17_Chr8g0349811 | 57.333 | 300 | 114 | 4 | 1 | 288 | 1 | 298 | 3.54e-119 | 343 |
| Msa1191440 | MtrunA17_Chr8g0349851 | 57.770 | 296 | 110 | 4 | 6 | 288 | 6 | 299 | 5.87e-119 | 343 |
| Msa1191440 | MtrunA17_Chr8g0349801 | 56.333 | 300 | 117 | 4 | 1 | 288 | 1 | 298 | 2.84e-116 | 336 |
| Msa1191440 | MtrunA17_Chr8g0349761 | 60.137 | 291 | 102 | 5 | 7 | 285 | 8 | 296 | 9.48e-116 | 335 |
| Msa1191440 | MtrunA17_Chr8g0349771 | 57.000 | 300 | 115 | 4 | 1 | 288 | 1 | 298 | 5.25e-115 | 333 |
| Msa1191440 | MtrunA17_Chr7g0247041 | 57.931 | 290 | 113 | 4 | 7 | 288 | 6 | 294 | 6.31e-114 | 330 |
| Msa1191440 | MtrunA17_Chr8g0349831 | 55.405 | 296 | 117 | 4 | 6 | 288 | 7 | 300 | 9.88e-111 | 322 |
| Msa1191440 | MtrunA17_Chr8g0349671 | 56.333 | 300 | 116 | 6 | 1 | 288 | 1 | 297 | 1.15e-109 | 319 |
| Msa1191440 | MtrunA17_Chr8g0349701 | 54.915 | 295 | 124 | 5 | 1 | 288 | 1 | 293 | 1.61e-109 | 319 |
| Msa1191440 | MtrunA17_Chr8g0349751 | 54.785 | 303 | 118 | 5 | 1 | 288 | 51 | 349 | 1.31e-108 | 318 |
| Msa1191440 | MtrunA17_Chr8g0349721 | 54.576 | 295 | 125 | 5 | 1 | 288 | 1 | 293 | 1.40e-108 | 316 |
| Msa1191440 | MtrunA17_Chr8g0349641 | 54.667 | 300 | 122 | 5 | 1 | 288 | 1 | 298 | 1.75e-106 | 311 |
| Msa1191440 | MtrunA17_Chr5g0425391 | 50.336 | 298 | 135 | 5 | 1 | 288 | 1 | 295 | 1.52e-98 | 291 |
| Msa1191440 | MtrunA17_Chr8g0349651 | 54.340 | 265 | 107 | 6 | 35 | 288 | 14 | 275 | 3.29e-91 | 271 |
| Msa1191440 | MtrunA17_Chr3g0118511 | 49.828 | 291 | 125 | 6 | 7 | 279 | 3 | 290 | 2.48e-82 | 250 |
| Msa1191440 | MtrunA17_Chr7g0267881 | 51.948 | 231 | 90 | 2 | 7 | 233 | 9 | 222 | 1.25e-76 | 233 |
| Msa1191440 | MtrunA17_Chr3g0131521 | 42.466 | 292 | 139 | 8 | 4 | 283 | 32 | 306 | 5.25e-62 | 198 |
| Msa1191440 | MtrunA17_Chr1g0160511 | 43.003 | 293 | 136 | 9 | 4 | 283 | 37 | 311 | 6.58e-58 | 188 |
| Msa1191440 | MtrunA17_Chr8g0385581 | 38.983 | 295 | 148 | 9 | 4 | 283 | 34 | 311 | 2.07e-51 | 171 |
| Msa1191440 | MtrunA17_Chr5g0437701 | 53.488 | 129 | 59 | 1 | 160 | 288 | 1 | 128 | 3.73e-44 | 146 |
| Msa1191440 | MtrunA17_Chr4g0045691 | 35.465 | 172 | 100 | 3 | 127 | 288 | 3 | 173 | 7.55e-29 | 108 |
| Msa1191440 | MtrunA17_Chr4g0045711 | 47.826 | 92 | 44 | 2 | 4 | 91 | 19 | 110 | 3.33e-15 | 70.5 |
| Msa1191440 | MtrunA17_Chr4g0058731 | 26.263 | 297 | 150 | 12 | 9 | 280 | 51 | 303 | 1.12e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1191440 | AT3G61220.1 | 56.757 | 296 | 120 | 3 | 1 | 288 | 1 | 296 | 9.25e-117 | 337 |
| Msa1191440 | AT3G61220.2 | 57.241 | 290 | 116 | 3 | 7 | 288 | 14 | 303 | 1.37e-115 | 335 |
| Msa1191440 | AT3G61220.3 | 57.241 | 290 | 116 | 3 | 7 | 288 | 38 | 327 | 3.48e-115 | 335 |
| Msa1191440 | AT2G24190.1 | 53.691 | 298 | 126 | 4 | 1 | 288 | 1 | 296 | 1.34e-110 | 322 |
| Msa1191440 | AT2G24190.2 | 54.110 | 292 | 122 | 4 | 7 | 288 | 12 | 301 | 9.74e-110 | 320 |
| Msa1191440 | AT1G01800.1 | 55.068 | 296 | 122 | 4 | 3 | 288 | 1 | 295 | 1.45e-107 | 314 |
| Msa1191440 | AT1G01800.2 | 54.106 | 207 | 85 | 3 | 91 | 288 | 55 | 260 | 3.44e-69 | 215 |
| Msa1191440 | AT5G51030.1 | 40.203 | 296 | 147 | 10 | 4 | 286 | 35 | 313 | 1.38e-59 | 192 |
| Msa1191440 | AT3G59710.3 | 41.844 | 282 | 142 | 7 | 4 | 280 | 16 | 280 | 4.10e-59 | 191 |
| Msa1191440 | AT3G59710.1 | 41.844 | 282 | 142 | 7 | 4 | 280 | 26 | 290 | 5.16e-59 | 191 |
| Msa1191440 | AT5G61830.1 | 41.034 | 290 | 145 | 6 | 6 | 283 | 36 | 311 | 2.55e-58 | 189 |
| Msa1191440 | AT5G61830.2 | 41.034 | 290 | 145 | 6 | 6 | 283 | 36 | 311 | 2.55e-58 | 189 |
| Msa1191440 | AT3G59710.2 | 41.844 | 282 | 142 | 7 | 4 | 280 | 45 | 309 | 3.29e-58 | 189 |
| Msa1191440 | AT5G50700.1 | 31.169 | 154 | 94 | 3 | 7 | 160 | 48 | 189 | 1.67e-13 | 70.1 |
| Msa1191440 | AT5G50600.1 | 31.169 | 154 | 94 | 3 | 7 | 160 | 48 | 189 | 1.67e-13 | 70.1 |
| Msa1191440 | AT4G24050.2 | 29.730 | 259 | 117 | 12 | 9 | 250 | 37 | 247 | 7.24e-13 | 67.8 |
| Msa1191440 | AT4G24050.1 | 29.730 | 259 | 117 | 12 | 9 | 250 | 37 | 247 | 8.66e-13 | 68.2 |
| Msa1191440 | AT5G50130.8 | 25.517 | 290 | 169 | 10 | 6 | 281 | 3 | 259 | 2.79e-12 | 66.2 |
| Msa1191440 | AT5G50130.9 | 26.141 | 241 | 145 | 8 | 9 | 249 | 39 | 246 | 5.76e-11 | 62.0 |
Find 58 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTACTGCAGGACTATTAA+AGG | 0.190820 | 8_1:-35895076 | Msa1191440:intron |
| TTCAGATATGCTGTTGTTAC+AGG | 0.201198 | 8_1:-35896389 | Msa1191440:intron |
| AGTTCCCTCCAATTAATAAT+TGG | 0.237001 | 8_1:+35895222 | None:intergenic |
| TCGAGTGATTCCACCACTTC+TGG | 0.273816 | 8_1:-35893941 | Msa1191440:CDS |
| ACCAATGAAGCAATACTAAA+AGG | 0.302446 | 8_1:+35896197 | None:intergenic |
| AGGTTGAACCAATTATTAAT+TGG | 0.308846 | 8_1:-35895230 | Msa1191440:CDS |
| GGTATATTATCTGTTGAAAA+TGG | 0.316053 | 8_1:-35893995 | Msa1191440:CDS |
| TAAAATTAATCATCTATCTA+TGG | 0.342933 | 8_1:-35896515 | Msa1191440:exon |
| ACGCAATTAATACATAAGTT+TGG | 0.345471 | 8_1:+35894058 | None:intergenic |
| ATGTATTAATTGCGTTTGTC+CGG | 0.349424 | 8_1:-35894050 | Msa1191440:CDS |
| GTTTGGAAGACTTGATATCT+TGG | 0.353617 | 8_1:-35896156 | Msa1191440:intron |
| ATTGGAAACTGTTAAAAGAT+TGG | 0.358632 | 8_1:-35896348 | Msa1191440:CDS |
| TTTAATTGAATCTAAATGAA+TGG | 0.373999 | 8_1:+35896534 | None:intergenic |
| ACAGGATCAAATAAAGGTAT+AGG | 0.380633 | 8_1:-35896371 | Msa1191440:CDS |
| TGGTTTCAACACAGACGATA+TGG | 0.383538 | 8_1:-35895353 | Msa1191440:intron |
| AATAAACAGCAATGAACAAA+TGG | 0.385084 | 8_1:+35893807 | None:intergenic |
| GTTAAAAGATTGGCTTCAAA+TGG | 0.389901 | 8_1:-35896338 | Msa1191440:CDS |
| TGCATAATAACAAATTACTA+TGG | 0.411597 | 8_1:-35895171 | Msa1191440:CDS |
| GTAAATAATGCAGGAATCAA+TGG | 0.443701 | 8_1:-35895373 | Msa1191440:CDS |
| GTTAATGTTTCTTCTACTGC+AGG | 0.448645 | 8_1:-35895087 | Msa1191440:CDS |
| GAGTTTGTTAAGACTCAGTT+TGG | 0.448827 | 8_1:-35896173 | Msa1191440:CDS |
| ATCAAATAAAGGTATAGGAT+TGG | 0.463443 | 8_1:-35896366 | Msa1191440:CDS |
| ATATGATAGGATATGTGTCT+TGG | 0.480820 | 8_1:-35893853 | Msa1191440:three_prime_UTR |
| GTTGTTACAGGATCAAATAA+AGG | 0.492642 | 8_1:-35896377 | Msa1191440:CDS |
| TGTATTAATTGCGTTTGTCC+GGG | 0.494685 | 8_1:-35894049 | Msa1191440:CDS |
| CTATGGCAATTTCAAAAGAA+AGG | 0.498850 | 8_1:-35896498 | Msa1191440:intron |
| TTGAACCAATTATTAATTGG+AGG | 0.500877 | 8_1:-35895227 | Msa1191440:CDS |
| TACCTCGTCTATTAGCTCTT+CGG | 0.500938 | 8_1:+35894210 | None:intergenic |
| TTATTAATCAAATGAAATGT+GGG | 0.504860 | 8_1:-35893789 | Msa1191440:three_prime_UTR |
| TTCAGTACATATCAAACGAA+TGG | 0.506130 | 8_1:-35894267 | Msa1191440:intron |
| TTTATTAATCAAATGAAATG+TGG | 0.512170 | 8_1:-35893790 | Msa1191440:three_prime_UTR |
| CATGTGCAGGTAAATAATGC+AGG | 0.516920 | 8_1:-35895382 | Msa1191440:intron |
| ACAGCTAGAAATCAGAAAAG+AGG | 0.518413 | 8_1:-35896299 | Msa1191440:CDS |
| ACATATCAAACGAATGGGCT+AGG | 0.522049 | 8_1:-35894261 | Msa1191440:CDS |
| TGAACCAATTATTAATTGGA+GGG | 0.526022 | 8_1:-35895226 | Msa1191440:CDS |
| GAATCAGATAACTGAAGAAG+AGG | 0.526731 | 8_1:+35895120 | None:intergenic |
| TCAGTACATATCAAACGAAT+GGG | 0.528974 | 8_1:-35894266 | Msa1191440:intron |
| GAAGAAACATTAACAATCAC+AGG | 0.532332 | 8_1:+35895096 | None:intergenic |
| TTATAGGCACAAAGATATGT+TGG | 0.548863 | 8_1:+35894133 | None:intergenic |
| ACAAGGTTCACTTGAAAACA+AGG | 0.549206 | 8_1:-35894161 | Msa1191440:CDS |
| ATAAACAGCAATGAACAAAT+GGG | 0.555758 | 8_1:+35893808 | None:intergenic |
| CAGCTAGAAATCAGAAAAGA+GGG | 0.559811 | 8_1:-35896298 | Msa1191440:CDS |
| GCTAATAGACGAGGTACTGA+AGG | 0.563423 | 8_1:-35894203 | Msa1191440:CDS |
| TTTCAATGTATTAAAATGGG+GGG | 0.578258 | 8_1:-35893876 | Msa1191440:three_prime_UTR |
| GATAGGATATGTGTCTTGGA+TGG | 0.587395 | 8_1:-35893849 | Msa1191440:three_prime_UTR |
| AGCGAAGAAGTGTCCAGAAG+TGG | 0.605903 | 8_1:+35893928 | None:intergenic |
| GTTCACTTGAAAACAAGGGT+TGG | 0.606906 | 8_1:-35894156 | Msa1191440:CDS |
| ACTGAGTCAAACTTATGAGA+TGG | 0.614913 | 8_1:-35895202 | Msa1191440:CDS |
| TATTAATCAAATGAAATGTG+GGG | 0.615096 | 8_1:-35893788 | Msa1191440:three_prime_UTR |
| ATAAGCTAGAAGCCTTGTGT+AGG | 0.622776 | 8_1:+35894087 | None:intergenic |
| ATAATAACAAATTACTATGG+TGG | 0.628363 | 8_1:-35895168 | Msa1191440:CDS |
| CAGCTGTGAATTCCTACACA+AGG | 0.629636 | 8_1:-35894099 | Msa1191440:CDS |
| TTTCTGAAAGACTTCAAACA+AGG | 0.631673 | 8_1:-35894178 | Msa1191440:CDS |
| ACAGATATGAATAGAAACAC+AGG | 0.645826 | 8_1:-35894016 | Msa1191440:CDS |
| GAAGAAGTGTCCAGAAGTGG+TGG | 0.653264 | 8_1:+35893931 | None:intergenic |
| CAAGGTTCACTTGAAAACAA+GGG | 0.660578 | 8_1:-35894160 | Msa1191440:CDS |
| ATCCGAAGAGCTAATAGACG+AGG | 0.706099 | 8_1:-35894212 | Msa1191440:CDS |
| TGGTGGTAAAGAAACTACTG+AGG | 0.726056 | 8_1:-35895151 | Msa1191440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTTTTAGTTATCT+TGG | - | chr8_1:35894357-35894376 | Msa1191440:intron | 10.0% |
| !! | TTTAATTGAATCTAAATGAA+TGG | + | chr8_1:35893755-35893774 | None:intergenic | 15.0% |
| !! | TAAAATTAATCATCTATCTA+TGG | - | chr8_1:35893771-35893790 | Msa1191440:three_prime_UTR | 15.0% |
| !! | CTTTGATAAAAGAAATTAAA+GGG | + | chr8_1:35893854-35893873 | None:intergenic | 15.0% |
| !! | ATTATGAATTACCATTTATT+TGG | - | chr8_1:35894269-35894288 | Msa1191440:intron | 15.0% |
| !! | CTCAAAAAATTATTGTATAA+AGG | - | chr8_1:35895400-35895419 | Msa1191440:intron | 15.0% |
| !! | TTAATTTCTCAAATTATTAG+TGG | + | chr8_1:35895585-35895604 | None:intergenic | 15.0% |
| !!! | ATGTTTTTCATTAGTTAATT+TGG | + | chr8_1:35895821-35895840 | None:intergenic | 15.0% |
| !! | TTTATTAATCAAATGAAATG+TGG | - | chr8_1:35896496-35896515 | Msa1191440:intron | 15.0% |
| !! | TTATTAATCAAATGAAATGT+GGG | - | chr8_1:35896497-35896516 | Msa1191440:intron | 15.0% |
| !!! | AATTTCTACTAAATTTTAGT+TGG | - | chr8_1:35896540-35896559 | Msa1191440:five_prime_UTR | 15.0% |
| !! | GCTTTGATAAAAGAAATTAA+AGG | + | chr8_1:35893855-35893874 | None:intergenic | 20.0% |
| !! | TTCTTGATTCTTAATTATCT+AGG | - | chr8_1:35894330-35894349 | Msa1191440:intron | 20.0% |
| !! | CTAAGTTATTTATCAAAACA+AGG | + | chr8_1:35894420-35894439 | None:intergenic | 20.0% |
| !!! | ATTATCACAAATTTTAGTCA+TGG | + | chr8_1:35894847-35894866 | None:intergenic | 20.0% |
| !! | AAAATTCAAGGCTATTATTA+TGG | + | chr8_1:35894884-35894903 | None:intergenic | 20.0% |
| !!! | TTTTTTGTATATGACTATTC+AGG | - | chr8_1:35895036-35895055 | Msa1191440:intron | 20.0% |
| !! | TGCATAATAACAAATTACTA+TGG | - | chr8_1:35895115-35895134 | Msa1191440:CDS | 20.0% |
| !! | ATAATAACAAATTACTATGG+TGG | - | chr8_1:35895118-35895137 | Msa1191440:CDS | 20.0% |
| !!! | CAATATTTTTCGTTTTTTAG+AGG | + | chr8_1:35895321-35895340 | None:intergenic | 20.0% |
| !!! | AATTGGTACTTTTCATTTTT+CGG | - | chr8_1:35895459-35895478 | Msa1191440:intron | 20.0% |
| !! | AAAAAATGATGAACTCTATA+TGG | + | chr8_1:35895488-35895507 | None:intergenic | 20.0% |
| !! | TTAAGTGTAATTATATGTGT+TGG | - | chr8_1:35895601-35895620 | Msa1191440:intron | 20.0% |
| !!! | AGGTTTTCAATGTATTAAAA+TGG | - | chr8_1:35896406-35896425 | Msa1191440:intron | 20.0% |
| !!! | GGTTTTCAATGTATTAAAAT+GGG | - | chr8_1:35896407-35896426 | Msa1191440:intron | 20.0% |
| !!! | GTTTTCAATGTATTAAAATG+GGG | - | chr8_1:35896408-35896427 | Msa1191440:intron | 20.0% |
| !!! | TTTTCAATGTATTAAAATGG+GGG | - | chr8_1:35896409-35896428 | Msa1191440:intron | 20.0% |
| !! | TATTAATCAAATGAAATGTG+GGG | - | chr8_1:35896498-35896517 | Msa1191440:intron | 20.0% |
| !! | AGGTACCTTTTATGTTTATT+TGG | - | chr8_1:35893808-35893827 | Msa1191440:three_prime_UTR | 25.0% |
| ! | TTGGTCCAAATAAACATAAA+AGG | + | chr8_1:35893816-35893835 | None:intergenic | 25.0% |
| !! | AGGGATCTTTTAACATTTAT+TGG | + | chr8_1:35893835-35893854 | None:intergenic | 25.0% |
| !! | ATCAAATAAAGGTATAGGAT+TGG | - | chr8_1:35893920-35893939 | Msa1191440:CDS | 25.0% |
| ! | ATTGGAAACTGTTAAAAGAT+TGG | - | chr8_1:35893938-35893957 | Msa1191440:CDS | 25.0% |
| !!! | AGAAAATTGGCTTTACATTA+AGG | + | chr8_1:35894169-35894188 | None:intergenic | 25.0% |
| !! | TTAATGTAAAGCCAATTTTC+TGG | - | chr8_1:35894168-35894187 | Msa1191440:CDS | 25.0% |
| ! | ATCATAATGATCCAGAAAAT+TGG | + | chr8_1:35894182-35894201 | None:intergenic | 25.0% |
| ! | TTTATCCAAGTGTTCAAAAA+TGG | + | chr8_1:35894496-35894515 | None:intergenic | 25.0% |
| ! | CTGTTTGAAAGAACTTATAA+GGG | + | chr8_1:35894613-35894632 | None:intergenic | 25.0% |
| ! | ACTGTTTGAAAGAACTTATA+AGG | + | chr8_1:35894614-35894633 | None:intergenic | 25.0% |
| ! | ACAAACTTTGGATAAACTAA+TGG | - | chr8_1:35894799-35894818 | Msa1191440:intron | 25.0% |
| !!! | CTTGTTTTCTTTAACTGTTT+GGG | - | chr8_1:35894964-35894983 | Msa1191440:intron | 25.0% |
| ! | AAAAAACAAAGCTTAATCAG+AGG | + | chr8_1:35895020-35895039 | None:intergenic | 25.0% |
| ! | AGGTTGAACCAATTATTAAT+TGG | - | chr8_1:35895056-35895075 | Msa1191440:intron | 25.0% |
| ! | TTGAACCAATTATTAATTGG+AGG | - | chr8_1:35895059-35895078 | Msa1191440:intron | 25.0% |
| ! | TGAACCAATTATTAATTGGA+GGG | - | chr8_1:35895060-35895079 | Msa1191440:intron | 25.0% |
| !! | AAGTCTTTGAATTTTTCTGA+AGG | + | chr8_1:35895291-35895310 | None:intergenic | 25.0% |
| !!! | ATTGGTACTTTTCATTTTTC+GGG | - | chr8_1:35895460-35895479 | Msa1191440:intron | 25.0% |
| ! | ACTAACATAAGACAGATATA+AGG | + | chr8_1:35895755-35895774 | None:intergenic | 25.0% |
| ! | TTGATGTGTATTTCATTAGT+AGG | + | chr8_1:35895794-35895813 | None:intergenic | 25.0% |
| ! | ACTAATGAAATACACATCAA+AGG | - | chr8_1:35895794-35895813 | Msa1191440:intron | 25.0% |
| ! | ACAGTTTATTTATGTTGTTC+AGG | + | chr8_1:35895982-35896001 | None:intergenic | 25.0% |
| ! | ACGCAATTAATACATAAGTT+TGG | + | chr8_1:35896231-35896250 | None:intergenic | 25.0% |
| !!! | ATATCTGTTTTAACAAAACC+CGG | + | chr8_1:35896258-35896277 | None:intergenic | 25.0% |
| ! | GGTATATTATCTGTTGAAAA+TGG | - | chr8_1:35896291-35896310 | Msa1191440:CDS | 25.0% |
| ! | TTTCAATGTATTAAAATGGG+GGG | - | chr8_1:35896410-35896429 | Msa1191440:intron | 25.0% |
| ! | ATAAACAGCAATGAACAAAT+GGG | + | chr8_1:35896481-35896500 | None:intergenic | 25.0% |
| ! | AATAAACAGCAATGAACAAA+TGG | + | chr8_1:35896482-35896501 | None:intergenic | 25.0% |
| CTATGGCAATTTCAAAAGAA+AGG | - | chr8_1:35893788-35893807 | Msa1191440:three_prime_UTR | 30.0% | |
| GTTGTTACAGGATCAAATAA+AGG | - | chr8_1:35893909-35893928 | Msa1191440:CDS | 30.0% | |
| ! | ACAGGATCAAATAAAGGTAT+AGG | - | chr8_1:35893915-35893934 | Msa1191440:CDS | 30.0% |
| !! | GTTAAAAGATTGGCTTCAAA+TGG | - | chr8_1:35893948-35893967 | Msa1191440:CDS | 30.0% |
| ! | TCCTTTTAGTATTGCTTCAT+TGG | - | chr8_1:35894088-35894107 | Msa1191440:CDS | 30.0% |
| ACCAATGAAGCAATACTAAA+AGG | + | chr8_1:35894092-35894111 | None:intergenic | 30.0% | |
| ! | TACCATTTATTTGGTGAATC+TGG | - | chr8_1:35894278-35894297 | Msa1191440:intron | 30.0% |
| TTCTTCATTCTCATTCTCAT+AGG | - | chr8_1:35894394-35894413 | Msa1191440:intron | 30.0% | |
| TGATAAAAGCTCTTAGCAAA+AGG | + | chr8_1:35894449-35894468 | None:intergenic | 30.0% | |
| !!! | ATAAGCCATTTTTGAACACT+TGG | - | chr8_1:35894488-35894507 | Msa1191440:intron | 30.0% |
| !!! | ACTTATTTTAGCTGATCTAC+TGG | + | chr8_1:35894653-35894672 | None:intergenic | 30.0% |
| GCACAAACACTTCAAATTAA+AGG | - | chr8_1:35894746-35894765 | Msa1191440:intron | 30.0% | |
| GTTTATCCAAAGTTTGTAAC+AGG | + | chr8_1:35894796-35894815 | None:intergenic | 30.0% | |
| GTAAATAATGCAGGAATCAA+TGG | - | chr8_1:35894913-35894932 | Msa1191440:intron | 30.0% | |
| !! | GCTTGTTTTCTTTAACTGTT+TGG | - | chr8_1:35894963-35894982 | Msa1191440:intron | 30.0% |
| ! | ACTGTTTGGGATGATAATAT+TGG | - | chr8_1:35894977-35894996 | Msa1191440:intron | 30.0% |
| AGTTCCCTCCAATTAATAAT+TGG | + | chr8_1:35895067-35895086 | None:intergenic | 30.0% | |
| GAAGAAACATTAACAATCAC+AGG | + | chr8_1:35895193-35895212 | None:intergenic | 30.0% | |
| CTATCAGAGATTATTTAGAC+TGG | + | chr8_1:35895368-35895387 | None:intergenic | 30.0% | |
| !! | TTGGTACTTTTCATTTTTCG+GGG | - | chr8_1:35895461-35895480 | Msa1191440:intron | 30.0% |
| ! | TCATAGGTGAAAACACATTT+TGG | + | chr8_1:35895517-35895536 | None:intergenic | 30.0% |
| TCTCAAATTATTAGTGGTGT+TGG | + | chr8_1:35895579-35895598 | None:intergenic | 30.0% | |
| ! | GTAATTATATGTGTTGGTGT+CGG | - | chr8_1:35895607-35895626 | Msa1191440:intron | 30.0% |
| ACATACAAGAAAAACATTCG+AGG | - | chr8_1:35895858-35895877 | Msa1191440:intron | 30.0% | |
| !! | CGAGGATGTTTTTATAAGTT+TGG | - | chr8_1:35895876-35895895 | Msa1191440:intron | 30.0% |
| GGTTAATTCAGAGTCTATAA+CGG | - | chr8_1:35895897-35895916 | Msa1191440:intron | 30.0% | |
| CTGATGTAAAGTGGTAATTT+CGG | + | chr8_1:35895949-35895968 | None:intergenic | 30.0% | |
| ACATTGTAACTGATGTAAAG+TGG | + | chr8_1:35895958-35895977 | None:intergenic | 30.0% | |
| TTCAGTACATATCAAACGAA+TGG | - | chr8_1:35896019-35896038 | Msa1191440:intron | 30.0% | |
| TCAGTACATATCAAACGAAT+GGG | - | chr8_1:35896020-35896039 | Msa1191440:intron | 30.0% | |
| ! | TTTCTGAAAGACTTCAAACA+AGG | - | chr8_1:35896108-35896127 | Msa1191440:intron | 30.0% |
| TTATAGGCACAAAGATATGT+TGG | + | chr8_1:35896156-35896175 | None:intergenic | 30.0% | |
| ATGTATTAATTGCGTTTGTC+CGG | - | chr8_1:35896236-35896255 | Msa1191440:CDS | 30.0% | |
| ACAGATATGAATAGAAACAC+AGG | - | chr8_1:35896270-35896289 | Msa1191440:CDS | 30.0% | |
| !! | AGATTTGTCTTGCTTTTGAA+AGG | - | chr8_1:35896386-35896405 | Msa1191440:CDS | 30.0% |
| ATATGATAGGATATGTGTCT+TGG | - | chr8_1:35896433-35896452 | Msa1191440:intron | 30.0% | |
| TTCAGATATGCTGTTGTTAC+AGG | - | chr8_1:35893897-35893916 | Msa1191440:exon | 35.0% | |
| ACAGCTAGAAATCAGAAAAG+AGG | - | chr8_1:35893987-35894006 | Msa1191440:CDS | 35.0% | |
| CAGCTAGAAATCAGAAAAGA+GGG | - | chr8_1:35893988-35894007 | Msa1191440:CDS | 35.0% | |
| !! | GAGTTTGTTAAGACTCAGTT+TGG | - | chr8_1:35894113-35894132 | Msa1191440:CDS | 35.0% |
| GTTTGGAAGACTTGATATCT+TGG | - | chr8_1:35894130-35894149 | Msa1191440:CDS | 35.0% | |
| CACCAGATTCACCAAATAAA+TGG | + | chr8_1:35894283-35894302 | None:intergenic | 35.0% | |
| ! | TTATTTGGTGAATCTGGTGA+AGG | - | chr8_1:35894284-35894303 | Msa1191440:intron | 35.0% |
| ! | CTTCAAATTAAAGGCGTGTT+TGG | - | chr8_1:35894755-35894774 | Msa1191440:intron | 35.0% |
| TCCAAAGTTTGTAACAGGTT+GGG | + | chr8_1:35894791-35894810 | None:intergenic | 35.0% | |
| ATCCAAAGTTTGTAACAGGT+TGG | + | chr8_1:35894792-35894811 | None:intergenic | 35.0% | |
| TACCTGCACATGAAAATTCA+AGG | + | chr8_1:35894896-35894915 | None:intergenic | 35.0% | |
| ACTGAGTCAAACTTATGAGA+TGG | - | chr8_1:35895084-35895103 | Msa1191440:CDS | 35.0% | |
| GAATCAGATAACTGAAGAAG+AGG | + | chr8_1:35895169-35895188 | None:intergenic | 35.0% | |
| GTTAATGTTTCTTCTACTGC+AGG | - | chr8_1:35895199-35895218 | Msa1191440:CDS | 35.0% | |
| TTCTACTGCAGGACTATTAA+AGG | - | chr8_1:35895210-35895229 | Msa1191440:CDS | 35.0% | |
| CCTCAAAAGTCTCAAATATC+AGG | + | chr8_1:35895435-35895454 | None:intergenic | 35.0% | |
| !! | CCTGATATTTGAGACTTTTG+AGG | - | chr8_1:35895432-35895451 | Msa1191440:intron | 35.0% |
| !! | GAGACTTTTGAGGACTAAAT+TGG | - | chr8_1:35895442-35895461 | Msa1191440:intron | 35.0% |
| ACAAGGTTCACTTGAAAACA+AGG | - | chr8_1:35896125-35896144 | Msa1191440:intron | 35.0% | |
| CAAGGTTCACTTGAAAACAA+GGG | - | chr8_1:35896126-35896145 | Msa1191440:intron | 35.0% | |
| !!! | AGCTGCTTTTGAGAGTTTAT+AGG | + | chr8_1:35896172-35896191 | None:intergenic | 35.0% |
| TGTATTAATTGCGTTTGTCC+GGG | - | chr8_1:35896237-35896256 | Msa1191440:CDS | 35.0% | |
| TTAAAATGGGGGGATATGAT+AGG | - | chr8_1:35896420-35896439 | Msa1191440:intron | 35.0% | |
| ! | TTTGTAACAGGTTGGGACAA+CGG | + | chr8_1:35894784-35894803 | None:intergenic | 40.0% |
| TCCCAACCTGTTACAAACTT+TGG | - | chr8_1:35894787-35894806 | Msa1191440:intron | 40.0% | |
| ! | AGCCTTGAATTTTCATGTGC+AGG | - | chr8_1:35894891-35894910 | Msa1191440:intron | 40.0% |
| CATGTGCAGGTAAATAATGC+AGG | - | chr8_1:35894904-35894923 | Msa1191440:intron | 40.0% | |
| TGGTTTCAACACAGACGATA+TGG | - | chr8_1:35894933-35894952 | Msa1191440:intron | 40.0% | |
| TGGTGGTAAAGAAACTACTG+AGG | - | chr8_1:35895135-35895154 | Msa1191440:CDS | 40.0% | |
| CTGCAGGACTATTAAAGGTA+AGG | - | chr8_1:35895215-35895234 | Msa1191440:CDS | 40.0% | |
| ! | GTGTTTTCACCTATGAAGCA+TGG | - | chr8_1:35895521-35895540 | Msa1191440:intron | 40.0% |
| TCACCTATGAAGCATGGATA+CGG | - | chr8_1:35895527-35895546 | Msa1191440:intron | 40.0% | |
| GCACGAACACTTATCAGATT+AGG | + | chr8_1:35895662-35895681 | None:intergenic | 40.0% | |
| ! | ACATATCAAACGAATGGGCT+AGG | - | chr8_1:35896025-35896044 | Msa1191440:intron | 40.0% |
| ! | TACCTCGTCTATTAGCTCTT+CGG | + | chr8_1:35896079-35896098 | None:intergenic | 40.0% |
| GTTCACTTGAAAACAAGGGT+TGG | - | chr8_1:35896130-35896149 | Msa1191440:intron | 40.0% | |
| ! | ATAAGCTAGAAGCCTTGTGT+AGG | + | chr8_1:35896202-35896221 | None:intergenic | 40.0% |
| GATAGGATATGTGTCTTGGA+TGG | - | chr8_1:35896437-35896456 | Msa1191440:intron | 40.0% | |
| TGTCCGTATCCATGCTTCAT+AGG | + | chr8_1:35895533-35895552 | None:intergenic | 45.0% | |
| ATGAAGCATGGATACGGACA+CGG | - | chr8_1:35895533-35895552 | Msa1191440:intron | 45.0% | |
| TTATCAGATTAGGCGTGTCC+AGG | + | chr8_1:35895652-35895671 | None:intergenic | 45.0% | |
| ATCCGAAGAGCTAATAGACG+AGG | - | chr8_1:35896074-35896093 | Msa1191440:intron | 45.0% | |
| !! | GCTAATAGACGAGGTACTGA+AGG | - | chr8_1:35896083-35896102 | Msa1191440:intron | 45.0% |
| CAGCTGTGAATTCCTACACA+AGG | - | chr8_1:35896187-35896206 | Msa1191440:CDS | 45.0% | |
| TCGAGTGATTCCACCACTTC+TGG | - | chr8_1:35896345-35896364 | Msa1191440:CDS | 50.0% | |
| !! | GAAGAAGTGTCCAGAAGTGG+TGG | + | chr8_1:35896358-35896377 | None:intergenic | 50.0% |
| !! | AGCGAAGAAGTGTCCAGAAG+TGG | + | chr8_1:35896361-35896380 | None:intergenic | 50.0% |
| TGTTGGCGTCTCAGTGTGTC+TGG | + | chr8_1:35895562-35895581 | None:intergenic | 55.0% | |
| GATTAGGCGTGTCCAGGTGT+CGG | + | chr8_1:35895646-35895665 | None:intergenic | 55.0% | |
| CACGTGTCGTGTCCGACACC+TGG | - | chr8_1:35895631-35895650 | Msa1191440:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 35893744 | 35896564 | 35893744 | ID=Msa1191440;Name=Msa1191440 |
| chr8_1 | mRNA | 35893744 | 35896564 | 35893744 | ID=Msa1191440-mRNA-1;Parent=Msa1191440;Name=Msa1191440-mRNA-1;_AED=0.26;_eAED=0.26;_QI=46|1|1|1|1|1|5|160|288 |
| chr8_1 | exon | 35893744 | 35894284 | 35893744 | ID=Msa1191440-mRNA-1:exon:11837;Parent=Msa1191440-mRNA-1 |
| chr8_1 | exon | 35895077 | 35895250 | 35895077 | ID=Msa1191440-mRNA-1:exon:11836;Parent=Msa1191440-mRNA-1 |
| chr8_1 | exon | 35895354 | 35895395 | 35895354 | ID=Msa1191440-mRNA-1:exon:11835;Parent=Msa1191440-mRNA-1 |
| chr8_1 | exon | 35896157 | 35896406 | 35896157 | ID=Msa1191440-mRNA-1:exon:11834;Parent=Msa1191440-mRNA-1 |
| chr8_1 | exon | 35896499 | 35896564 | 35896499 | ID=Msa1191440-mRNA-1:exon:11833;Parent=Msa1191440-mRNA-1 |
| chr8_1 | five_prime_UTR | 35896519 | 35896564 | 35896519 | ID=Msa1191440-mRNA-1:five_prime_utr;Parent=Msa1191440-mRNA-1 |
| chr8_1 | CDS | 35896499 | 35896518 | 35896499 | ID=Msa1191440-mRNA-1:cds;Parent=Msa1191440-mRNA-1 |
| chr8_1 | CDS | 35896157 | 35896406 | 35896157 | ID=Msa1191440-mRNA-1:cds;Parent=Msa1191440-mRNA-1 |
| chr8_1 | CDS | 35895354 | 35895395 | 35895354 | ID=Msa1191440-mRNA-1:cds;Parent=Msa1191440-mRNA-1 |
| chr8_1 | CDS | 35895077 | 35895250 | 35895077 | ID=Msa1191440-mRNA-1:cds;Parent=Msa1191440-mRNA-1 |
| chr8_1 | CDS | 35893904 | 35894284 | 35893904 | ID=Msa1191440-mRNA-1:cds;Parent=Msa1191440-mRNA-1 |
| chr8_1 | three_prime_UTR | 35893744 | 35893903 | 35893744 | ID=Msa1191440-mRNA-1:three_prime_utr;Parent=Msa1191440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
