AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1048220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1048220 AT3G24100.1 83.333 42 5 2 8 49 7 46 4.47e-14 60.5

Find 38 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATATTATTATTATTGATA+TGG 0.221082 7_2:+9855872 Msa1048220:three_prime_UTR
CTTTATATTGTATCTTTGTT+TGG 0.321918 7_2:+9856076 Msa1048220:three_prime_UTR
ATAATTGGTGTTTCCTTGAA+TGG 0.333364 7_2:+9856026 Msa1048220:three_prime_UTR
AACCTTTCTCTACGTTGTTC+AGG 0.342009 7_2:-9855506 None:intergenic
ATATTCTAGTCGTCTTCTTT+TGG 0.352227 7_2:+9855955 Msa1048220:three_prime_UTR
GTCAACCCATCATTCTTTCC+AGG 0.352643 7_2:-9855482 None:intergenic
GGGGTAACTCAACAAATAAT+TGG 0.414690 7_2:+9856011 Msa1048220:three_prime_UTR
ACCTTTCTCTACGTTGTTCA+GGG 0.422756 7_2:-9855505 None:intergenic
AACAGCTAAGAAAGCAGGTC+AGG 0.430416 7_2:+9855801 Msa1048220:CDS
TATTGATATGGAGCTTGATA+AGG 0.435379 7_2:+9855884 Msa1048220:three_prime_UTR
TAATTGGTGTTTCCTTGAAT+GGG 0.439319 7_2:+9856027 Msa1048220:three_prime_UTR
GGAGCTTGATAAGGTGTTGT+TGG 0.450986 7_2:+9855893 Msa1048220:three_prime_UTR
TGAAAGGGCTGCAGCTAGAG+TGG 0.451547 7_2:+9855442 Msa1048220:CDS
TCCTTGAATGGGATTGATGT+TGG 0.464881 7_2:+9856038 Msa1048220:three_prime_UTR
TCCAACATCAATCCCATTCA+AGG 0.466939 7_2:-9856039 None:intergenic
GGAAAGCCTGGAAAGAATGA+TGG 0.477481 7_2:+9855476 Msa1048220:CDS
TAGGGATGCAAAGGCACTGC+AGG 0.480602 7_2:+9855774 Msa1048220:intron
GCTAGAGTGGGTGGTTCTAA+AGG 0.489038 7_2:+9855455 Msa1048220:CDS
AAGAAAGCAGGTCAGGATGC+AGG 0.489533 7_2:+9855808 Msa1048220:CDS
AGAGAGAGAAAGATCGTGAA+AGG 0.508023 7_2:+9855426 Msa1048220:intron
GGTGGTTCTAAAGGAAAGCC+TGG 0.519858 7_2:+9855464 Msa1048220:CDS
GAGAGAGAAAGATCGTGAAA+GGG 0.539461 7_2:+9855427 Msa1048220:intron
AAGATACAATATAAAGTCAC+TGG 0.543908 7_2:-9856069 None:intergenic
TGTGTTTATTATTGTCATGT+GGG 0.545196 7_2:+9855991 Msa1048220:three_prime_UTR
GGGTAAACATAAGAGCAGAT+AGG 0.549373 7_2:-9856163 None:intergenic
GAGAAAACAGCTAAGAAAGC+AGG 0.550224 7_2:+9855796 Msa1048220:CDS
CCCCTGAACAACGTAGAGAA+AGG 0.554850 7_2:+9855504 Msa1048220:CDS
ATGTGTTTATTATTGTCATG+TGG 0.555615 7_2:+9855990 Msa1048220:three_prime_UTR
GATGCAGGAGGGAATAATGC+AGG 0.589253 7_2:+9855823 Msa1048220:CDS
GAAAGCCTGGAAAGAATGAT+GGG 0.597021 7_2:+9855477 Msa1048220:CDS
GAAAGGGCTGCAGCTAGAGT+GGG 0.604267 7_2:+9855443 Msa1048220:CDS
GTGTTTATTATTGTCATGTG+GGG 0.621451 7_2:+9855992 Msa1048220:three_prime_UTR
AGGGCTGCAGCTAGAGTGGG+TGG 0.622633 7_2:+9855446 Msa1048220:CDS
AAAGCAGGTCAGGATGCAGG+AGG 0.647782 7_2:+9855811 Msa1048220:CDS
CCTTTCTCTACGTTGTTCAG+GGG 0.652678 7_2:-9855504 None:intergenic
AAGCAGGTCAGGATGCAGGA+GGG 0.655111 7_2:+9855812 Msa1048220:CDS
GCAGGAGGGAATAATGCAGG+TGG 0.659216 7_2:+9855826 Msa1048220:CDS
GTATATCAAACAATATAACA+TGG 0.682520 7_2:-9856141 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATAAATTATCAATTTAT+TGG + chr7_2:9854639-9854658 Msa1048220:intron 10.0%
!! AGGATTAAATATTTAAATAT+AGG + chr7_2:9854733-9854752 Msa1048220:intron 10.0%
!! GGATTAAATATTTAAATATA+GGG + chr7_2:9854734-9854753 Msa1048220:intron 10.0%
!! GAATATTATTATTATTGATA+TGG + chr7_2:9855872-9855891 Msa1048220:three_prime_UTR 10.0%
!! GAAATAAATTATCAATTTAT+TGG + chr7_2:9854639-9854658 Msa1048220:intron 10.0%
!! AGGATTAAATATTTAAATAT+AGG + chr7_2:9854733-9854752 Msa1048220:intron 10.0%
!! GGATTAAATATTTAAATATA+GGG + chr7_2:9854734-9854753 Msa1048220:intron 10.0%
!! GAATATTATTATTATTGATA+TGG + chr7_2:9855872-9855891 Msa1048220:three_prime_UTR 10.0%
!!! AATAGTAGGTTTTTTTTTTT+TGG + chr7_2:9854270-9854289 Msa1048220:intron 15.0%
!!! AAATTGGTGATTAAATTTTT+TGG + chr7_2:9854515-9854534 Msa1048220:intron 15.0%
!!! AATAGTAGGTTTTTTTTTTT+TGG + chr7_2:9854270-9854289 Msa1048220:intron 15.0%
!!! AAATTGGTGATTAAATTTTT+TGG + chr7_2:9854515-9854534 Msa1048220:intron 15.0%
!! ACATTGAAACATTCATTAAT+CGG - chr7_2:9854234-9854253 None:intergenic 20.0%
!! ACCTACTATTATTCATTAAT+CGG - chr7_2:9854260-9854279 None:intergenic 20.0%
!! TTTATTGTTGCAAAGAAAAA+AGG + chr7_2:9854685-9854704 Msa1048220:intron 20.0%
!! ATTTAAATATAGGGTACAAA+AGG + chr7_2:9854743-9854762 Msa1048220:intron 20.0%
!!! TTTCTGTTTTCAATTTTCTA+GGG + chr7_2:9855104-9855123 Msa1048220:intron 20.0%
!! CGAATTAAACGAAAATTAAA+AGG - chr7_2:9855192-9855211 None:intergenic 20.0%
!! TCATTAATTCTCGTTAATTT+AGG + chr7_2:9855212-9855231 Msa1048220:intron 20.0%
!! CATTAATTCTCGTTAATTTA+GGG + chr7_2:9855213-9855232 Msa1048220:intron 20.0%
!! TTTATTGTTGCAAAGAAAAA+AGG - chr7_2:9854685-9854704 None:intergenic 20.0%
!! TTTATGATTTGAATCTGTTA+TGG + chr7_2:9855364-9855383 Msa1048220:intron 20.0%
!! TTATGATTTGAATCTGTTAT+GGG + chr7_2:9855365-9855384 Msa1048220:intron 20.0%
!!! TCATTTTCTGAAGTTATTAT+CGG + chr7_2:9855651-9855670 Msa1048220:intron 20.0%
!!! TGTCTTTTTCCTTATTTTTT+AGG + chr7_2:9855755-9855774 Msa1048220:intron 20.0%
!!! GTCTTTTTCCTTATTTTTTA+GGG + chr7_2:9855756-9855775 Msa1048220:intron 20.0%
!! CTTTATATTGTATCTTTGTT+TGG + chr7_2:9856076-9856095 Msa1048220:three_prime_UTR 20.0%
!! GTATATCAAACAATATAACA+TGG - chr7_2:9856144-9856163 None:intergenic 20.0%
!! ACATTGAAACATTCATTAAT+CGG - chr7_2:9854234-9854253 None:intergenic 20.0%
!! ACCTACTATTATTCATTAAT+CGG - chr7_2:9854260-9854279 None:intergenic 20.0%
!! TTTATTGTTGCAAAGAAAAA+AGG + chr7_2:9854685-9854704 Msa1048220:intron 20.0%
!! ATTTAAATATAGGGTACAAA+AGG + chr7_2:9854743-9854762 Msa1048220:intron 20.0%
!!! TTTCTGTTTTCAATTTTCTA+GGG + chr7_2:9855104-9855123 Msa1048220:intron 20.0%
!! CGAATTAAACGAAAATTAAA+AGG - chr7_2:9855192-9855211 None:intergenic 20.0%
!! TCATTAATTCTCGTTAATTT+AGG + chr7_2:9855212-9855231 Msa1048220:intron 20.0%
!! CATTAATTCTCGTTAATTTA+GGG + chr7_2:9855213-9855232 Msa1048220:intron 20.0%
!! TTTATTGTTGCAAAGAAAAA+AGG - chr7_2:9854685-9854704 None:intergenic 20.0%
!! TTTATGATTTGAATCTGTTA+TGG + chr7_2:9855364-9855383 Msa1048220:intron 20.0%
!! TTATGATTTGAATCTGTTAT+GGG + chr7_2:9855365-9855384 Msa1048220:intron 20.0%
!!! TCATTTTCTGAAGTTATTAT+CGG + chr7_2:9855651-9855670 Msa1048220:intron 20.0%
!!! TGTCTTTTTCCTTATTTTTT+AGG + chr7_2:9855755-9855774 Msa1048220:intron 20.0%
!!! GTCTTTTTCCTTATTTTTTA+GGG + chr7_2:9855756-9855775 Msa1048220:intron 20.0%
!! CTTTATATTGTATCTTTGTT+TGG + chr7_2:9856076-9856095 Msa1048220:three_prime_UTR 20.0%
!! GTATATCAAACAATATAACA+TGG - chr7_2:9856144-9856163 None:intergenic 20.0%
! CATTGAAACATTCATTAATC+GGG - chr7_2:9854233-9854252 None:intergenic 25.0%
! CCTACTATTATTCATTAATC+GGG - chr7_2:9854259-9854278 None:intergenic 25.0%
!!! AGTAGGTTTTTTTTTTTTGG+TGG + chr7_2:9854273-9854292 Msa1048220:intron 25.0%
! ACATAACAGTTGATCAAAAT+TGG + chr7_2:9854499-9854518 Msa1048220:intron 25.0%
!!! TTGGTGATTAAATTTTTTGG+AGG + chr7_2:9854518-9854537 Msa1048220:intron 25.0%
!! GTTTCTGTTTTCAATTTTCT+AGG + chr7_2:9855103-9855122 Msa1048220:intron 25.0%
! ATTGAATAATGTAAAGACAC+CGG - chr7_2:9855692-9855711 None:intergenic 25.0%
! ATGTGTTTATTATTGTCATG+TGG + chr7_2:9855990-9856009 Msa1048220:three_prime_UTR 25.0%
! TGTGTTTATTATTGTCATGT+GGG + chr7_2:9855991-9856010 Msa1048220:three_prime_UTR 25.0%
! AAGATACAATATAAAGTCAC+TGG - chr7_2:9856072-9856091 None:intergenic 25.0%
! CATTGAAACATTCATTAATC+GGG - chr7_2:9854233-9854252 None:intergenic 25.0%
! CCTACTATTATTCATTAATC+GGG - chr7_2:9854259-9854278 None:intergenic 25.0%
!!! AGTAGGTTTTTTTTTTTTGG+TGG + chr7_2:9854273-9854292 Msa1048220:intron 25.0%
! ACATAACAGTTGATCAAAAT+TGG + chr7_2:9854499-9854518 Msa1048220:intron 25.0%
!!! TTGGTGATTAAATTTTTTGG+AGG + chr7_2:9854518-9854537 Msa1048220:intron 25.0%
!! GTTTCTGTTTTCAATTTTCT+AGG + chr7_2:9855103-9855122 Msa1048220:intron 25.0%
! ATTGAATAATGTAAAGACAC+CGG - chr7_2:9855692-9855711 None:intergenic 25.0%
! ATGTGTTTATTATTGTCATG+TGG + chr7_2:9855990-9856009 Msa1048220:three_prime_UTR 25.0%
! TGTGTTTATTATTGTCATGT+GGG + chr7_2:9855991-9856010 Msa1048220:three_prime_UTR 25.0%
! AAGATACAATATAAAGTCAC+TGG - chr7_2:9856072-9856091 None:intergenic 25.0%
CCCGATTAATGAATAATAGT+AGG + chr7_2:9854256-9854275 Msa1048220:intron 30.0%
!!! AGGTTTTTTTTTTTTGGTGG+TGG + chr7_2:9854276-9854295 Msa1048220:intron 30.0%
!!! TTTTTTTTTTTGGTGGTGGT+TGG + chr7_2:9854280-9854299 Msa1048220:intron 30.0%
GACAATGCATAAAATATGCA+AGG - chr7_2:9854321-9854340 None:intergenic 30.0%
AGAAGAAATTATAGAGAGAG+AGG - chr7_2:9854857-9854876 None:intergenic 30.0%
TAGCGAATTAAAGAGAAAAG+TGG - chr7_2:9855060-9855079 None:intergenic 30.0%
! ATTGATTCTTCAACAACGAA+GGG - chr7_2:9855150-9855169 None:intergenic 30.0%
TTTGAATCTGTTATGGGTAT+TGG + chr7_2:9855371-9855390 Msa1048220:intron 30.0%
!! ATTTAACTTTGAAGCTAACG+CGG + chr7_2:9855398-9855417 Msa1048220:intron 30.0%
!!! GGTGTTTTGGAAAATATACT+TGG - chr7_2:9855549-9855568 None:intergenic 30.0%
CTTTGCATCCCTAAAAAATA+AGG - chr7_2:9855767-9855786 None:intergenic 30.0%
!!! CTTATTTTTTAGGGATGCAA+AGG + chr7_2:9855765-9855784 Msa1048220:intron 30.0%
TATTGATATGGAGCTTGATA+AGG + chr7_2:9855884-9855903 Msa1048220:three_prime_UTR 30.0%
!!! TTGTTGGTTTTAGACATTTG+TGG + chr7_2:9855909-9855928 Msa1048220:three_prime_UTR 30.0%
! ATATTCTAGTCGTCTTCTTT+TGG + chr7_2:9855955-9855974 Msa1048220:three_prime_UTR 30.0%
GTGTTTATTATTGTCATGTG+GGG + chr7_2:9855992-9856011 Msa1048220:three_prime_UTR 30.0%
! ATAATTGGTGTTTCCTTGAA+TGG + chr7_2:9856026-9856045 Msa1048220:three_prime_UTR 30.0%
! TAATTGGTGTTTCCTTGAAT+GGG + chr7_2:9856027-9856046 Msa1048220:three_prime_UTR 30.0%
CCCGATTAATGAATAATAGT+AGG + chr7_2:9854256-9854275 Msa1048220:intron 30.0%
!!! AGGTTTTTTTTTTTTGGTGG+TGG + chr7_2:9854276-9854295 Msa1048220:intron 30.0%
!!! TTTTTTTTTTTGGTGGTGGT+TGG + chr7_2:9854280-9854299 Msa1048220:intron 30.0%
GACAATGCATAAAATATGCA+AGG - chr7_2:9854321-9854340 None:intergenic 30.0%
AGAAGAAATTATAGAGAGAG+AGG - chr7_2:9854857-9854876 None:intergenic 30.0%
TAGCGAATTAAAGAGAAAAG+TGG - chr7_2:9855060-9855079 None:intergenic 30.0%
! ATTGATTCTTCAACAACGAA+GGG - chr7_2:9855150-9855169 None:intergenic 30.0%
TTTGAATCTGTTATGGGTAT+TGG + chr7_2:9855371-9855390 Msa1048220:intron 30.0%
!! ATTTAACTTTGAAGCTAACG+CGG + chr7_2:9855398-9855417 Msa1048220:intron 30.0%
!!! GGTGTTTTGGAAAATATACT+TGG - chr7_2:9855549-9855568 None:intergenic 30.0%
CTTTGCATCCCTAAAAAATA+AGG - chr7_2:9855767-9855786 None:intergenic 30.0%
!!! CTTATTTTTTAGGGATGCAA+AGG + chr7_2:9855765-9855784 Msa1048220:intron 30.0%
TATTGATATGGAGCTTGATA+AGG + chr7_2:9855884-9855903 Msa1048220:three_prime_UTR 30.0%
!!! TTGTTGGTTTTAGACATTTG+TGG + chr7_2:9855909-9855928 Msa1048220:three_prime_UTR 30.0%
! ATATTCTAGTCGTCTTCTTT+TGG + chr7_2:9855955-9855974 Msa1048220:three_prime_UTR 30.0%
GTGTTTATTATTGTCATGTG+GGG + chr7_2:9855992-9856011 Msa1048220:three_prime_UTR 30.0%
! ATAATTGGTGTTTCCTTGAA+TGG + chr7_2:9856026-9856045 Msa1048220:three_prime_UTR 30.0%
! TAATTGGTGTTTCCTTGAAT+GGG + chr7_2:9856027-9856046 Msa1048220:three_prime_UTR 30.0%
CTTGAAGCTTATGTTGATCT+TGG - chr7_2:9854187-9854206 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG - chr7_2:9854316-9854335 None:intergenic 35.0%
! AATCTGTTTTCGCGTACAAA+AGG - chr7_2:9854612-9854631 None:intergenic 35.0%
GAAATTATAGAGAGAGAGGT+GGG - chr7_2:9854853-9854872 None:intergenic 35.0%
AGAAATTATAGAGAGAGAGG+TGG - chr7_2:9854854-9854873 None:intergenic 35.0%
TGCATTCTCTCTCTTTAATC+AGG + chr7_2:9854906-9854925 Msa1048220:intron 35.0%
ATTGAGAAGAGGAAAAAGAG+AGG - chr7_2:9854934-9854953 None:intergenic 35.0%
! GATTGATTCTTCAACAACGA+AGG - chr7_2:9855151-9855170 None:intergenic 35.0%
!! AATCTGTTATGGGTATTGGT+TGG + chr7_2:9855375-9855394 Msa1048220:intron 35.0%
! ATGCATTCGATAAGAAGTGT+CGG - chr7_2:9855570-9855589 None:intergenic 35.0%
! CAAATGTGTAGGTGTCATAT+CGG - chr7_2:9855615-9855634 None:intergenic 35.0%
ATGACACCTACACATTTGAT+TGG + chr7_2:9855617-9855636 Msa1048220:intron 35.0%
CTCAATCCAATCAAATGTGT+AGG - chr7_2:9855626-9855645 None:intergenic 35.0%
GGGGTAACTCAACAAATAAT+TGG + chr7_2:9856011-9856030 Msa1048220:three_prime_UTR 35.0%
CTTGAAGCTTATGTTGATCT+TGG - chr7_2:9854187-9854206 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG - chr7_2:9854316-9854335 None:intergenic 35.0%
! AATCTGTTTTCGCGTACAAA+AGG - chr7_2:9854612-9854631 None:intergenic 35.0%
GAAATTATAGAGAGAGAGGT+GGG - chr7_2:9854853-9854872 None:intergenic 35.0%
AGAAATTATAGAGAGAGAGG+TGG - chr7_2:9854854-9854873 None:intergenic 35.0%
TGCATTCTCTCTCTTTAATC+AGG + chr7_2:9854906-9854925 Msa1048220:intron 35.0%
ATTGAGAAGAGGAAAAAGAG+AGG - chr7_2:9854934-9854953 None:intergenic 35.0%
! GATTGATTCTTCAACAACGA+AGG - chr7_2:9855151-9855170 None:intergenic 35.0%
!! AATCTGTTATGGGTATTGGT+TGG + chr7_2:9855375-9855394 Msa1048220:intron 35.0%
! ATGCATTCGATAAGAAGTGT+CGG - chr7_2:9855570-9855589 None:intergenic 35.0%
! CAAATGTGTAGGTGTCATAT+CGG - chr7_2:9855615-9855634 None:intergenic 35.0%
ATGACACCTACACATTTGAT+TGG + chr7_2:9855617-9855636 Msa1048220:intron 35.0%
CTCAATCCAATCAAATGTGT+AGG - chr7_2:9855626-9855645 None:intergenic 35.0%
GGGGTAACTCAACAAATAAT+TGG + chr7_2:9856011-9856030 Msa1048220:three_prime_UTR 35.0%
GCATAAAATATGCAAGGTCC+GGG - chr7_2:9854315-9854334 None:intergenic 40.0%
TTGAAGATTCGTGAACAGCT+TGG - chr7_2:9854814-9854833 None:intergenic 40.0%
GAGAGGTGGGAAACTTTATT+TGG - chr7_2:9854840-9854859 None:intergenic 40.0%
TTTCACGATCTTTCTCTCTC+TGG - chr7_2:9855427-9855446 None:intergenic 40.0%
AGAGAGAGAAAGATCGTGAA+AGG + chr7_2:9855426-9855445 Msa1048220:intron 40.0%
GAGAGAGAAAGATCGTGAAA+GGG + chr7_2:9855427-9855446 Msa1048220:intron 40.0%
GAAAGCCTGGAAAGAATGAT+GGG + chr7_2:9855477-9855496 Msa1048220:CDS 40.0%
ACCTTTCTCTACGTTGTTCA+GGG - chr7_2:9855508-9855527 None:intergenic 40.0%
AACCTTTCTCTACGTTGTTC+AGG - chr7_2:9855509-9855528 None:intergenic 40.0%
!!! GATAAGAAGTGTCGGTGTTT+TGG - chr7_2:9855562-9855581 None:intergenic 40.0%
!! TGAAGTTATTATCGGTGTCG+TGG + chr7_2:9855659-9855678 Msa1048220:intron 40.0%
GAGAAAACAGCTAAGAAAGC+AGG + chr7_2:9855796-9855815 Msa1048220:CDS 40.0%
TGCAGGTGGAAGCAAAAAAT+AGG + chr7_2:9855840-9855859 Msa1048220:CDS 40.0%
TCCTTGAATGGGATTGATGT+TGG + chr7_2:9856038-9856057 Msa1048220:three_prime_UTR 40.0%
TCCAACATCAATCCCATTCA+AGG - chr7_2:9856042-9856061 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG - chr7_2:9854315-9854334 None:intergenic 40.0%
TTGAAGATTCGTGAACAGCT+TGG - chr7_2:9854814-9854833 None:intergenic 40.0%
GAGAGGTGGGAAACTTTATT+TGG - chr7_2:9854840-9854859 None:intergenic 40.0%
TTTCACGATCTTTCTCTCTC+TGG - chr7_2:9855427-9855446 None:intergenic 40.0%
AGAGAGAGAAAGATCGTGAA+AGG + chr7_2:9855426-9855445 Msa1048220:intron 40.0%
GAGAGAGAAAGATCGTGAAA+GGG + chr7_2:9855427-9855446 Msa1048220:intron 40.0%
GAAAGCCTGGAAAGAATGAT+GGG + chr7_2:9855477-9855496 Msa1048220:CDS 40.0%
ACCTTTCTCTACGTTGTTCA+GGG - chr7_2:9855508-9855527 None:intergenic 40.0%
AACCTTTCTCTACGTTGTTC+AGG - chr7_2:9855509-9855528 None:intergenic 40.0%
!!! GATAAGAAGTGTCGGTGTTT+TGG - chr7_2:9855562-9855581 None:intergenic 40.0%
!! TGAAGTTATTATCGGTGTCG+TGG + chr7_2:9855659-9855678 Msa1048220:intron 40.0%
GAGAAAACAGCTAAGAAAGC+AGG + chr7_2:9855796-9855815 Msa1048220:CDS 40.0%
TGCAGGTGGAAGCAAAAAAT+AGG + chr7_2:9855840-9855859 Msa1048220:CDS 40.0%
TCCTTGAATGGGATTGATGT+TGG + chr7_2:9856038-9856057 Msa1048220:three_prime_UTR 40.0%
TCCAACATCAATCCCATTCA+AGG - chr7_2:9856042-9856061 None:intergenic 40.0%
! TGAGCATAGCTCAGTTGGTA+TGG - chr7_2:9854343-9854362 None:intergenic 45.0%
GGAAAGCCTGGAAAGAATGA+TGG + chr7_2:9855476-9855495 Msa1048220:CDS 45.0%
GTCAACCCATCATTCTTTCC+AGG - chr7_2:9855485-9855504 None:intergenic 45.0%
CCTTTCTCTACGTTGTTCAG+GGG - chr7_2:9855507-9855526 None:intergenic 45.0%
!! GTTATTATCGGTGTCGTGGT+CGG + chr7_2:9855663-9855682 Msa1048220:intron 45.0%
AACAGCTAAGAAAGCAGGTC+AGG + chr7_2:9855801-9855820 Msa1048220:CDS 45.0%
!! GGAGCTTGATAAGGTGTTGT+TGG + chr7_2:9855893-9855912 Msa1048220:three_prime_UTR 45.0%
! TGAGCATAGCTCAGTTGGTA+TGG - chr7_2:9854343-9854362 None:intergenic 45.0%
GGAAAGCCTGGAAAGAATGA+TGG + chr7_2:9855476-9855495 Msa1048220:CDS 45.0%
GTCAACCCATCATTCTTTCC+AGG - chr7_2:9855485-9855504 None:intergenic 45.0%
CCTTTCTCTACGTTGTTCAG+GGG - chr7_2:9855507-9855526 None:intergenic 45.0%
!! GTTATTATCGGTGTCGTGGT+CGG + chr7_2:9855663-9855682 Msa1048220:intron 45.0%
AACAGCTAAGAAAGCAGGTC+AGG + chr7_2:9855801-9855820 Msa1048220:CDS 45.0%
!! GGAGCTTGATAAGGTGTTGT+TGG + chr7_2:9855893-9855912 Msa1048220:three_prime_UTR 45.0%
!!! AATATTATTTTTTCAATAAA+AGG + chr7_2:9854713-9854732 Msa1048220:intron 5.0%
!!! AAAAAAAAAGTTTTTTTTTT+TGG + chr7_2:9855340-9855359 Msa1048220:intron 5.0%
!!! AAAAAAAAGTTTTTTTTTTT+GGG + chr7_2:9855341-9855360 Msa1048220:intron 5.0%
!!! AATATTATTTTTTCAATAAA+AGG + chr7_2:9854713-9854732 Msa1048220:intron 5.0%
!!! AAAAAAAAAGTTTTTTTTTT+TGG + chr7_2:9855340-9855359 Msa1048220:intron 5.0%
!!! AAAAAAAAGTTTTTTTTTTT+GGG + chr7_2:9855341-9855360 Msa1048220:intron 5.0%
! GGTGGTTGGAGTTTGAAACC+CGG + chr7_2:9854294-9854313 Msa1048220:intron 50.0%
CCTCATGAGCATAGCTCAGT+TGG - chr7_2:9854348-9854367 None:intergenic 50.0%
CCAACTGAGCTATGCTCATG+AGG + chr7_2:9854345-9854364 Msa1048220:intron 50.0%
!! GCTAGAGTGGGTGGTTCTAA+AGG + chr7_2:9855455-9855474 Msa1048220:CDS 50.0%
!! GGTGGTTCTAAAGGAAAGCC+TGG + chr7_2:9855464-9855483 Msa1048220:CDS 50.0%
CCCCTGAACAACGTAGAGAA+AGG + chr7_2:9855504-9855523 Msa1048220:CDS 50.0%
AAGAAAGCAGGTCAGGATGC+AGG + chr7_2:9855808-9855827 Msa1048220:CDS 50.0%
GATGCAGGAGGGAATAATGC+AGG + chr7_2:9855823-9855842 Msa1048220:CDS 50.0%
! GGTGGTTGGAGTTTGAAACC+CGG + chr7_2:9854294-9854313 Msa1048220:intron 50.0%
CCTCATGAGCATAGCTCAGT+TGG - chr7_2:9854348-9854367 None:intergenic 50.0%
CCAACTGAGCTATGCTCATG+AGG + chr7_2:9854345-9854364 Msa1048220:intron 50.0%
!! GCTAGAGTGGGTGGTTCTAA+AGG + chr7_2:9855455-9855474 Msa1048220:CDS 50.0%
!! GGTGGTTCTAAAGGAAAGCC+TGG + chr7_2:9855464-9855483 Msa1048220:CDS 50.0%
CCCCTGAACAACGTAGAGAA+AGG + chr7_2:9855504-9855523 Msa1048220:CDS 50.0%
AAGAAAGCAGGTCAGGATGC+AGG + chr7_2:9855808-9855827 Msa1048220:CDS 50.0%
GATGCAGGAGGGAATAATGC+AGG + chr7_2:9855823-9855842 Msa1048220:CDS 50.0%
TGAAAGGGCTGCAGCTAGAG+TGG + chr7_2:9855442-9855461 Msa1048220:CDS 55.0%
GAAAGGGCTGCAGCTAGAGT+GGG + chr7_2:9855443-9855462 Msa1048220:CDS 55.0%
!! TAGGGATGCAAAGGCACTGC+AGG + chr7_2:9855774-9855793 Msa1048220:intron 55.0%
AAAGCAGGTCAGGATGCAGG+AGG + chr7_2:9855811-9855830 Msa1048220:CDS 55.0%
AAGCAGGTCAGGATGCAGGA+GGG + chr7_2:9855812-9855831 Msa1048220:CDS 55.0%
GCAGGAGGGAATAATGCAGG+TGG + chr7_2:9855826-9855845 Msa1048220:CDS 55.0%
TGAAAGGGCTGCAGCTAGAG+TGG + chr7_2:9855442-9855461 Msa1048220:CDS 55.0%
GAAAGGGCTGCAGCTAGAGT+GGG + chr7_2:9855443-9855462 Msa1048220:CDS 55.0%
!! TAGGGATGCAAAGGCACTGC+AGG + chr7_2:9855774-9855793 Msa1048220:intron 55.0%
AAAGCAGGTCAGGATGCAGG+AGG + chr7_2:9855811-9855830 Msa1048220:CDS 55.0%
AAGCAGGTCAGGATGCAGGA+GGG + chr7_2:9855812-9855831 Msa1048220:CDS 55.0%
GCAGGAGGGAATAATGCAGG+TGG + chr7_2:9855826-9855845 Msa1048220:CDS 55.0%
!! TCGGTGTCGTGGTCGGTTTC+CGG + chr7_2:9855670-9855689 Msa1048220:intron 60.0%
!! TCGGTGTCGTGGTCGGTTTC+CGG + chr7_2:9855670-9855689 Msa1048220:intron 60.0%
AGGGCTGCAGCTAGAGTGGG+TGG + chr7_2:9855446-9855465 Msa1048220:CDS 65.0%
AGGGCTGCAGCTAGAGTGGG+TGG + chr7_2:9855446-9855465 Msa1048220:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 9854148 9856174 9854148 ID=Msa1048220;Name=Msa1048220
chr7_2 mRNA 9854148 9856174 9854148 ID=Msa1048220-mRNA-1;Parent=Msa1048220;Name=Msa1048220-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.5|0.33|0.66|1|1|3|313|67
chr7_2 exon 9854148 9854168 9854148 ID=Msa1048220-mRNA-1:exon:2538;Parent=Msa1048220-mRNA-1
chr7_2 exon 9855428 9855525 9855428 ID=Msa1048220-mRNA-1:exon:2539;Parent=Msa1048220-mRNA-1
chr7_2 exon 9855777 9856174 9855777 ID=Msa1048220-mRNA-1:exon:2540;Parent=Msa1048220-mRNA-1
chr7_2 CDS 9854148 9854168 9854148 ID=Msa1048220-mRNA-1:cds;Parent=Msa1048220-mRNA-1
chr7_2 CDS 9855428 9855525 9855428 ID=Msa1048220-mRNA-1:cds;Parent=Msa1048220-mRNA-1
chr7_2 CDS 9855777 9855861 9855777 ID=Msa1048220-mRNA-1:cds;Parent=Msa1048220-mRNA-1
chr7_2 three_prime_UTR 9855862 9856174 9855862 ID=Msa1048220-mRNA-1:three_prime_utr;Parent=Msa1048220-mRNA-1
Gene Sequence

>Msa1048220

ATGAAAAATTCATCAAATTGGAGAGAGAAAGATCGTGAAAGGGCTGCAGCTAGAGTGGGTGGTTCTAAAGGAAAGCCTGGAAAGAATGATGGGTTGACCCCTGAACAACGTAGAGAAAGGGATGCAAAGGCACTGCAGGAGAAAACAGCTAAGAAAGCAGGTCAGGATGCAGGAGGGAATAATGCAGGTGGAAGCAAAAAATAG

Protein sequence

>Msa1048220

MKNSSNWREKDRERAAARVGGSKGKPGKNDGLTPEQRRERDAKALQEKTAKKAGQDAGGNNAGGSKK*