AlfalfaGEDB | Msa0053050

M. sativa cultivar zhongmu-4 / Msa0053050

KEGG: K13210
GO: GO:0001505 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0010558 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010984 GO:0010985 GO:0010988 GO:0010989 GO:0016070 GO:0016071 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0019439 GO:0030425 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032991 GO:0034097 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0034660 GO:0035770 GO:0035925 GO:0036464 GO:0036477 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045019 GO:0045428 GO:0045935 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097447 GO:0097458 GO:0120025 GO:0120038 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903311 GO:1903313 GO:1903426 GO:1903427 GO:1904406 GO:1990904 GO:2000112 GO:2000113 GO:2000377 GO:2000378 GO:2000628
PFAM: PF00013.32

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0053050	XP_003589039.2	91.975	648	25	4	1	642	1	627	0.0	1052

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0053050	sp\|Q96AE4\|FUBP1_HUMAN	31.754	211	112	4	95	277	243	449	1.18e-19	97.1
Msa0053050	sp\|Q96AE4\|FUBP1_HUMAN	30.738	244	145	9	51	282	31	262	5.61e-19	94.7

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0053050	G7IBA6	91.975	648	25	4	1	642	1	627	0.0	1052

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004540	Msa0053050	-0.807200	5.676910e-50	-8.615850e-47
Msa0005000	Msa0053050	0.963017	1.423638e-121	-8.615850e-47
Msa0022750	Msa0053050	0.819116	1.375411e-52	-8.615850e-47
Msa0053050	Msa0092170	-0.813823	2.105930e-51	-8.615850e-47
Msa0053050	Msa0098390	0.963351	5.592451e-122	-8.615850e-47
Msa0053050	Msa0119320	-0.836572	8.652678e-57	-8.615850e-47
Msa0053050	Msa0130240	-0.823874	1.095124e-53	-8.615850e-47
Msa0053050	Msa0140300	-0.803814	2.912306e-49	-8.615850e-47
Msa0053050	Msa0140400	-0.804982	1.663142e-49	-8.615850e-47
Msa0053050	Msa0140510	0.808900	2.467328e-50	-8.615850e-47

Showing 1 to 10 of 89 entries

Previous1 2 3 4 5…9Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0053050	MtrunA17_Chr1g0151761	91.975	648	25	4	1	642	1	627	0.0	1052
Msa0053050	MtrunA17_Chr3g0135621	62.593	671	156	19	1	642	1	605	0.0	628
Msa0053050	MtrunA17_Chr3g0135631	66.334	401	102	10	229	612	1	385	8.41e-134	398
Msa0053050	MtrunA17_Chr3g0135641	58.407	226	46	7	1	215	1	189	5.60e-67	218
Msa0053050	MtrunA17_Chr5g0396111	56.213	169	70	2	112	276	185	353	3.98e-57	197
Msa0053050	MtrunA17_Chr5g0396111	45.070	71	38	1	115	184	284	354	8.67e-11	64.3
Msa0053050	MtrunA17_Chr7g0217251	28.906	256	134	12	112	353	169	390	2.11e-14	76.6
Msa0053050	MtrunA17_Chr1g0197441	28.641	206	122	6	115	307	39	232	9.36e-13	70.1
Msa0053050	MtrunA17_Chr4g0049801	29.747	158	87	5	122	267	30	175	5.83e-11	65.5

Showing 1 to 9 of 9 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0053050	AT2G25970.1	52.782	665	195	33	1	611	1	600	1.34e-142	429
Msa0053050	AT4G10070.1	44.882	254	125	7	110	353	174	422	3.21e-54	197
Msa0053050	AT1G33680.1	36.464	543	266	25	110	618	230	727	4.86e-52	192
Msa0053050	AT5G04430.2	27.653	311	158	12	69	366	9	265	8.51e-16	79.7
Msa0053050	AT5G04430.1	29.817	218	115	8	69	279	9	195	6.63e-14	73.6

Showing 1 to 5 of 5 entries

Previous1Next

Find 278 sgRNAs with CRISPR-Local

Find 531 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGGTGGTTCGTGAGTG+AGG	0.566199	1_2:+7469633	None:intergenic
AAACGGACCAAATTCGACAA+CGG	0.710424	1_2:-7469474	Msa0053050:CDS
AAATAAACTAATTTAACACA+GGG	0.678781	1_2:+7463176	None:intergenic
AAATCAGCGGTGGCGGGAGG+GGG	0.314498	1_2:+7469573	None:intergenic
AACCAGACTGTGTTTGAGGT+TGG	0.607137	1_2:+7463694	None:intergenic
AAGAAACCCTAGCTGTAGCT+GGG	0.528278	1_2:+7469756	None:intergenic
AAGAAGATTGAAATCCCTAA+TGG	0.454062	1_2:-7468734	Msa0053050:CDS
AAGAGTATGCAAGCTACAAC+TGG	0.418295	1_2:-7467767	Msa0053050:CDS
AAGCTATGGGTCAGCTCAAG+AGG	0.543556	1_2:-7463898	Msa0053050:CDS
AAGCTCGGCCACCCTCTAGC+TGG	0.354172	1_2:-7464322	Msa0053050:CDS

Showing 1 to 10 of 278 entries

Previous1 2 3 4 5…28Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTTAATGAGTTCGAAATCAG+CGG	+	chr1_2:7463312-7463331	None:intergenic	30.0%
GCAACTAAAATTGAGTATAG+AGG	-	chr1_2:7463567-7463586	Msa0053050:CDS	30.0%
AAGAAGATTGAAATCCCTAA+TGG	-	chr1_2:7464135-7464154	Msa0053050:CDS	30.0%
GTAAGCTCAACTAATCTATT+TGG	+	chr1_2:7464270-7464289	None:intergenic	30.0%
CATGAAGATTCCAAATAACA+AGG	-	chr1_2:7464938-7464957	Msa0053050:intron	30.0%
AAGATTCCAAATAACAAGGT+GGG	-	chr1_2:7464942-7464961	Msa0053050:intron	30.0%
AACAAAACAAAATGAAGGCA+TGG	+	chr1_2:7465156-7465175	None:intergenic	30.0%
AGCACAACAAAACAAAATGA+AGG	+	chr1_2:7465161-7465180	None:intergenic	30.0%
TTGTACTTGTATGTTCTTTC+AGG	-	chr1_2:7465339-7465358	Msa0053050:intron	30.0%
AAATCCAACAGTAAAGCATA+GGG	+	chr1_2:7465496-7465515	None:intergenic	30.0%

Showing 1 to 10 of 531 entries

Previous1 2 3 4 5…54Next

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	7463071	7469820	7463071	ID=Msa0053050;Name=Msa0053050
chr1_2	mRNA	7463071	7469820	7463071	ID=Msa0053050-mRNA-1;Parent=Msa0053050;Name=Msa0053050-mRNA-1;_AED=0.29;_eAED=0.29;_QI=96\|1\|1\|1\|1\|1\|6\|231\|642
chr1_2	exon	7463071	7464396	7463071	ID=Msa0053050-mRNA-1:exon:2557;Parent=Msa0053050-mRNA-1
chr1_2	exon	7467411	7467530	7467411	ID=Msa0053050-mRNA-1:exon:2556;Parent=Msa0053050-mRNA-1
chr1_2	exon	7467754	7467825	7467754	ID=Msa0053050-mRNA-1:exon:2555;Parent=Msa0053050-mRNA-1
chr1_2	exon	7467932	7468021	7467932	ID=Msa0053050-mRNA-1:exon:2554;Parent=Msa0053050-mRNA-1
chr1_2	exon	7468544	7468818	7468544	ID=Msa0053050-mRNA-1:exon:2553;Parent=Msa0053050-mRNA-1
chr1_2	exon	7469448	7469820	7469448	ID=Msa0053050-mRNA-1:exon:2552;Parent=Msa0053050-mRNA-1
chr1_2	five_prime_UTR	7469725	7469820	7469725	ID=Msa0053050-mRNA-1:five_prime_utr;Parent=Msa0053050-mRNA-1
chr1_2	CDS	7469448	7469724	7469448	ID=Msa0053050-mRNA-1:cds;Parent=Msa0053050-mRNA-1
chr1_2	CDS	7468544	7468818	7468544	ID=Msa0053050-mRNA-1:cds;Parent=Msa0053050-mRNA-1
chr1_2	CDS	7467932	7468021	7467932	ID=Msa0053050-mRNA-1:cds;Parent=Msa0053050-mRNA-1
chr1_2	CDS	7467754	7467825	7467754	ID=Msa0053050-mRNA-1:cds;Parent=Msa0053050-mRNA-1
chr1_2	CDS	7467411	7467530	7467411	ID=Msa0053050-mRNA-1:cds;Parent=Msa0053050-mRNA-1
chr1_2	CDS	7463302	7464396	7463302	ID=Msa0053050-mRNA-1:cds;Parent=Msa0053050-mRNA-1
chr1_2	three_prime_UTR	7463071	7463301	7463071	ID=Msa0053050-mRNA-1:three_prime_utr;Parent=Msa0053050-mRNA-1

Gene Sequence

>Msa0053050

ATGGCTGACGAATCGCAATACGACTCAACTCCACCTTCCCTGAAACGCAAGTACGACGAACAGCCACCTCCTCACTCACGAACCACCGGTTTCTCCGACGGACCTCCTCCTCCTTCTTACAACAACGTCCCCCCTCCCGCCACCGCTGATTTCGAACTCATTAAACAACGCGCTCAACAAGTCGCCGCTCGTCTCCTCTCTGGTGCCGCTGCTCCCTCTGATGTCGTCAAACGGACCAAATTCGACAACGGTCCTCCTTCCCCTTACGATTCATCAGATTTGAAGAGTCAATATGCAGCTCCTATGAGTATACCTTCGTATTCGCATCAAGGGTCAAGCAAGAAGATTGAAATCCCTAATGGAAGGGTTGGTGTTATTATTGGAAAAGGTGGAGAAACTATCAAGTATCTTCAGTTGCAATCTGGTGCAAAAATCCAAGTTACCCGTGATATGGATGCTGATCCTAATTCTCCAAATAGATTAGTTGAGCTTACTGGTACTTCTGATGCTATTGCTACTGCTGAGAAACTCATCAATGAAGTTCTTGCTGAGGCTGAGTCTGGAGGTAATGGACTTGTTACTCGACGAATGACTGGACAGGGTGGCGCTGATGAGTTTTCCATGAAGATTCCAAATAACAAGGTTGGTCTTATAATCGGTAAAGGTGGAGAAACGATAAAGAGTATGCAAGCTACAACTGGAGCAAGAATTCAGGTGATTCCTCTTCATCTTCCCCCAGGCGACACATCCACTGAAAGAACATTAAAAATTGAAGGGACCTCTGAACAAATTGAATCTGCAAAACAATTGGTTGATTCAATCCTCAGTGGCGAGAATCGTCTTAGAAATCCATCAATGTCCGGTGGTTACTCTCAGCAAGGTTACCAAGCTCGGCCACCCTCTAGCTGGGCTCCCCCTGCCGCTTCTCAACAACCTGGTTATGGCTATGCACAGCCTGGAGCATACCCTGGTCCAACTTCCCAGTACAATGTGCCTCAGCAAGCTTATGCAGGTTATCCTCCCCACTCAGCTGGTGGATATTCTACCAATTGGGACCAGTCCACTGCAACTGCCCAGCAGTCTACCTATGATTATTATAATCAACAGCCTCAGCAACAGCAGAATCCTGGTGGTCCTGCACCTCCAGCTGATGGGACTGCTTACAATTACAATCAACCACCATCCGCTGGTTATAACCAACCGGGGCAGGTATATTCTCAGGATGGCTATGGTGCATATCAACAACCACCACAATCAGGGTATGCTCAGCCAACATCATATGATCAGCAGCAAATCTATGGCTCAGCCCCAAGCTATGGGTCAGCTCAAGAGGGCCAAACTACCACCAACTATGGATCAAAAGGGGATTCAACCCAAGTTCCACCTGTCCAACCTTCACAACAAGGTTATGGTAGCAGCCAACAGCCTAGCCCAAATGCTGCCAACTATCCACCACAAGGGGCTGCTCAGCCAAGTTATGGGGTACCGCCAACCTCCCAAGCAGCATATGGCAGCCAACCTCAAACACAGTCTGGTTATGGACCCCCTCAAACTCAAAAGCCAAGTGGTACTCCGCCTGCATACGGACAATCACAGTCACCTAATGCTGCTGGAGGTTATGGTCAACCTGGGTATCCTCCTTCCCAGCCCCCTCCTTCTGGATATTCCCAACCAGAAGCAGGCTCTCAAAGAGCACCACCTTCTGGTTATGGTCCTCCATCATATGGTCCTCCGTCATATGGTGCTCCTGCAGGCGGTCAACCTGGTTATGGTCAGGCACCACATGGTTCCTATGGTGCTGGTTATCCTCAGGCCCCAGCATATTCTGCTGATGGTAATGCAAGTGGGAATGCCCGTGGTGGTAGCTATGATGGAGCACCTGCACAGGGAGCTCAGCAGGCTAGTGTTGCTAAGTCACCTCAGAGCTGA

Protein sequence

>Msa0053050

MADESQYDSTPPSLKRKYDEQPPPHSRTTGFSDGPPPPSYNNVPPPATADFELIKQRAQQVAARLLSGAAAPSDVVKRTKFDNGPPSPYDSSDLKSQYAAPMSIPSYSHQGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVELTGTSDAIATAEKLINEVLAEAESGGNGLVTRRMTGQGGADEFSMKIPNNKVGLIIGKGGETIKSMQATTGARIQVIPLHLPPGDTSTERTLKIEGTSEQIESAKQLVDSILSGENRLRNPSMSGGYSQQGYQARPPSSWAPPAASQQPGYGYAQPGAYPGPTSQYNVPQQAYAGYPPHSAGGYSTNWDQSTATAQQSTYDYYNQQPQQQQNPGGPAPPADGTAYNYNQPPSAGYNQPGQVYSQDGYGAYQQPPQSGYAQPTSYDQQQIYGSAPSYGSAQEGQTTTNYGSKGDSTQVPPVQPSQQGYGSSQQPSPNAANYPPQGAAQPSYGVPPTSQAAYGSQPQTQSGYGPPQTQKPSGTPPAYGQSQSPNAAGGYGQPGYPPSQPPPSGYSQPEAGSQRAPPSGYGPPSYGPPSYGAPAGGQPGYGQAPHGSYGAGYPQAPAYSADGNASGNARGGSYDGAPAQGAQQASVAKSPQS*