AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1422840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422840 MtrunA17_Chr3g0135011 97.229 397 11 0 1 397 1 397 0.0 789
Msa1422840 MtrunA17_Chr5g0400931 43.735 423 202 7 1 397 1 413 2.67e-117 347
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422840 AT1G10150.1 52.041 392 177 4 7 390 13 401 4.65e-139 403
Msa1422840 AT1G59510.1 46.194 381 175 5 9 388 15 366 7.41e-118 348
Msa1422840 AT3G49790.1 41.892 370 174 6 5 373 12 341 4.22e-92 281

Find 79 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTTATATTTACATATTT+TGG 0.007902 tig0025489:+55194 Msa1422840:CDS
GTTGATGGAGTTGGGGATTC+TGG 0.036210 tig0025489:+54934 Msa1422840:CDS
TTCCTCCGACATGGCAATTT+TGG 0.092739 tig0025489:-54323 None:intergenic
CGAAAAGGTGAAGGGAATTT+TGG 0.152646 tig0025489:+54759 Msa1422840:CDS
TCGAAATCTGATGGTATTTC+TGG 0.188403 tig0025489:+54580 Msa1422840:CDS
GGATAATTGTTTGAAACTAT+TGG 0.205140 tig0025489:-54302 None:intergenic
TTGAGTTCACCTAGGGAAAA+TGG 0.207384 tig0025489:+54862 Msa1422840:CDS
CTCAAATCAGATTTACCTTT+TGG 0.212767 tig0025489:-54844 None:intergenic
TTTGAAAAGGGGTGTTAATA+AGG 0.254480 tig0025489:+55089 Msa1422840:CDS
GAAAAGTGTGGGAAGGTTAT+AGG 0.268010 tig0025489:+54625 Msa1422840:CDS
GATAATTGTTTGAAACTATT+GGG 0.292814 tig0025489:-54301 None:intergenic
AAAAGTGTGGGAAGGTTATA+GGG 0.303415 tig0025489:+54626 Msa1422840:CDS
TTGATGGAGTTGGGGATTCT+GGG 0.306483 tig0025489:+54935 Msa1422840:CDS
TGAAACGGTTTCTGCGGAAC+TGG 0.346962 tig0025489:-54227 None:intergenic
GGCTGGAACTGGGTTTGTTT+CGG 0.350057 tig0025489:+54486 Msa1422840:CDS
GGATTCTGGGTGGCTTGAAC+AGG 0.351079 tig0025489:+54948 Msa1422840:CDS
CTTATGTCTGAGGCTGGAAC+TGG 0.363984 tig0025489:+54475 Msa1422840:CDS
AAGTTGGAAAATGTTGATTC+GGG 0.380669 tig0025489:+54556 Msa1422840:CDS
GAAGTTGGAAAATGTTGATT+CGG 0.393462 tig0025489:+54555 Msa1422840:CDS
GAGAAATTTGTTTAAATCGT+TGG 0.399408 tig0025489:-54257 None:intergenic
CATTTGTGGAGTTTATGTTA+TGG 0.403207 tig0025489:+55052 Msa1422840:CDS
TTTGGTTAAAACATCTCATC+AGG 0.407964 tig0025489:+54810 Msa1422840:CDS
AGAATCCTAAAAGCGCGATT+AGG 0.413573 tig0025489:-54099 None:intergenic
AATTTCTGAAGATAAGCTTC+CGG 0.414427 tig0025489:-54895 None:intergenic
AGCTTTATAAGCACCGTAAC+CGG 0.430646 tig0025489:-54122 None:intergenic
TATCTTCAGAAATTCAGAAA+TGG 0.439497 tig0025489:+54904 Msa1422840:CDS
CGAAACTGTGAGGTCATTTG+TGG 0.447805 tig0025489:+55038 Msa1422840:CDS
GAAGCTCTGTTGATGGAGTT+GGG 0.450576 tig0025489:+54926 Msa1422840:CDS
AATATCAGAAGGTTTGAAAA+GGG 0.454639 tig0025489:+55077 Msa1422840:CDS
ATGCAAGTTGTTAGATATGT+AGG 0.456238 tig0025489:+55138 Msa1422840:CDS
AACTGGGTTTGTTTCGGTTG+TGG 0.457163 tig0025489:+54492 Msa1422840:CDS
AGCACAAACCTCTGGTTAGC+TGG 0.460341 tig0025489:-54991 None:intergenic
AACGAAAGCTTTGAGAAGCT+TGG 0.461504 tig0025489:-54185 None:intergenic
AGGTTTGTGCTTGATGTCAC+GGG 0.461808 tig0025489:+55003 Msa1422840:CDS
GGAAAATGGGCGTTTGAAAC+CGG 0.463327 tig0025489:+54876 Msa1422840:CDS
AGAAATGGAAGCTCTGTTGA+TGG 0.465656 tig0025489:+54919 Msa1422840:CDS
TAATGGTGCTGTTGAGACTT+TGG 0.466719 tig0025489:+54792 Msa1422840:CDS
TGAGTTCACCTAGGGAAAAT+GGG 0.476331 tig0025489:+54863 Msa1422840:CDS
GAATATCAGAAGGTTTGAAA+AGG 0.486731 tig0025489:+55076 Msa1422840:CDS
GGAAGCTCTGTTGATGGAGT+TGG 0.496439 tig0025489:+54925 Msa1422840:CDS
GGTTTCAAAGTCTTTAACAC+AGG 0.507988 tig0025489:+54366 Msa1422840:CDS
ATCGTTGGAAACGATTGAAA+CGG 0.512284 tig0025489:-54242 None:intergenic
GAGGTTTGTGCTTGATGTCA+CGG 0.533268 tig0025489:+55002 Msa1422840:CDS
GATAAGCTTATGTCTGAGGC+TGG 0.543039 tig0025489:+54469 Msa1422840:CDS
GAATCCAAAACACCACGAAA+AGG 0.544499 tig0025489:+54744 Msa1422840:CDS
AACGATTGAAACGGTTTCTG+CGG 0.546930 tig0025489:-54233 None:intergenic
ATCTGATTTGAGTTCACCTA+GGG 0.546953 tig0025489:+54855 Msa1422840:CDS
CTTTGAGAAGCTTGGTGAAG+CGG 0.547949 tig0025489:-54177 None:intergenic
GGGTGGTAGTAGGATTCTAG+TGG 0.548130 tig0025489:+55215 Msa1422840:CDS
TGACATCAAGCACAAACCTC+TGG 0.548454 tig0025489:-54999 None:intergenic
ATTATCCAAAATTGCCATGT+CGG 0.550657 tig0025489:+54318 Msa1422840:CDS
AAAGTGTGGGAAGGTTATAG+GGG 0.564724 tig0025489:+54627 Msa1422840:CDS
ATGGAGTTGGGGATTCTGGG+TGG 0.564951 tig0025489:+54938 Msa1422840:CDS
GGGTTTGTTTCGGTTGTGGT+TGG 0.582510 tig0025489:+54496 Msa1422840:CDS
GTTTCAAAGTCTTTAACACA+GGG 0.590487 tig0025489:+54367 Msa1422840:CDS
GTTGGATAAGCTTATGTCTG+AGG 0.594329 tig0025489:+54465 Msa1422840:CDS
TTATGTCTGAGGCTGGAACT+GGG 0.597190 tig0025489:+54476 Msa1422840:CDS
TGAGAAGCTTGGTGAAGCGG+TGG 0.598441 tig0025489:-54174 None:intergenic
GTGATTTGTGATGAAAAGTG+TGG 0.602122 tig0025489:+54613 Msa1422840:CDS
CATGATGACGTTGTAGACAA+AGG 0.605113 tig0025489:+55114 Msa1422840:CDS
GATTCGGGGTCGAAATCTGA+TGG 0.609922 tig0025489:+54571 Msa1422840:CDS
ATATCAGAAGGTTTGAAAAG+GGG 0.613283 tig0025489:+55078 Msa1422840:CDS
AAAACACCACGAAAAGGTGA+AGG 0.616934 tig0025489:+54750 Msa1422840:CDS
ATCCAAAATTGCCATGTCGG+AGG 0.618224 tig0025489:+54321 Msa1422840:CDS
ATGTTATGGAGAATATCAGA+AGG 0.618821 tig0025489:+55066 Msa1422840:CDS
AATCTGATTTGAGTTCACCT+AGG 0.620883 tig0025489:+54854 Msa1422840:CDS
TATCGAAAATTCCTCCGACA+TGG 0.623097 tig0025489:-54332 None:intergenic
AAAACCCTTGGAAATTGGTG+CGG 0.627520 tig0025489:+54417 Msa1422840:CDS
AAGCTCTGTTGATGGAGTTG+GGG 0.629477 tig0025489:+54927 Msa1422840:CDS
TTTCTGTGCCAGCTAACCAG+AGG 0.634765 tig0025489:+54983 Msa1422840:CDS
AAACACCACGAAAAGGTGAA+GGG 0.640062 tig0025489:+54751 Msa1422840:CDS
TTGTGATGAAAAGTGTGGGA+AGG 0.642371 tig0025489:+54618 Msa1422840:CDS
TGTTTACGTGAGAAATTGAG+TGG 0.648714 tig0025489:-54061 None:intergenic
TGATTTGTGATGAAAAGTGT+GGG 0.672796 tig0025489:+54614 Msa1422840:CDS
AGTTGGAAAATGTTGATTCG+GGG 0.681446 tig0025489:+54557 Msa1422840:CDS
ATATGTAGGAGCTAAGTCGT+CGG 0.689384 tig0025489:+55152 Msa1422840:CDS
TAAATATAAAGCAAGACACA+AGG 0.689722 tig0025489:-55184 None:intergenic
GGTTTGTGCTTGATGTCACG+GGG 0.712732 tig0025489:+55004 Msa1422840:CDS
GAGTGACATTCGAAACTGTG+AGG 0.724455 tig0025489:+55028 Msa1422840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGCTTTATATTTACATATTT+TGG + tig0025489:55194-55213 Msa1422840:CDS 15.0%
!!! GCTTTATATTTACATATTTT+GGG + tig0025489:55195-55214 Msa1422840:CDS 15.0%
!!! TGCTTTATATTTACATATTT+TGG + tig0025489:55194-55213 Msa1422840:CDS 15.0%
!!! GCTTTATATTTACATATTTT+GGG + tig0025489:55195-55214 Msa1422840:CDS 15.0%
!!! GATAATTGTTTGAAACTATT+GGG - tig0025489:54304-54323 None:intergenic 20.0%
!!! AATTTTCGATAACAATTTCT+AGG + tig0025489:54344-54363 Msa1422840:CDS 20.0%
!!! ATTTTCGATAACAATTTCTA+GGG + tig0025489:54345-54364 Msa1422840:CDS 20.0%
!!! TGTTTTTCTTGATAAAACAA+TGG + tig0025489:54684-54703 Msa1422840:CDS 20.0%
!!! TTATATTTACATATTTTGGG+TGG + tig0025489:55198-55217 Msa1422840:CDS 20.0%
!!! GATAATTGTTTGAAACTATT+GGG - tig0025489:54304-54323 None:intergenic 20.0%
!!! AATTTTCGATAACAATTTCT+AGG + tig0025489:54344-54363 Msa1422840:CDS 20.0%
!!! ATTTTCGATAACAATTTCTA+GGG + tig0025489:54345-54364 Msa1422840:CDS 20.0%
!!! TGTTTTTCTTGATAAAACAA+TGG + tig0025489:54684-54703 Msa1422840:CDS 20.0%
!!! TTATATTTACATATTTTGGG+TGG + tig0025489:55198-55217 Msa1422840:CDS 20.0%
!! GAGAAATTTGTTTAAATCGT+TGG - tig0025489:54260-54279 None:intergenic 25.0%
!! GGATAATTGTTTGAAACTAT+TGG - tig0025489:54305-54324 None:intergenic 25.0%
!!! AAAAATCGAATTTTTCGGAT+AGG + tig0025489:54440-54459 Msa1422840:CDS 25.0%
!!! AAAATCGAATTTTTCGGATA+GGG + tig0025489:54441-54460 Msa1422840:CDS 25.0%
!!! ATTTTGGTTTCTCTATGTAA+TGG + tig0025489:54775-54794 Msa1422840:CDS 25.0%
! TATCTTCAGAAATTCAGAAA+TGG + tig0025489:54904-54923 Msa1422840:CDS 25.0%
! AATATCAGAAGGTTTGAAAA+GGG + tig0025489:55077-55096 Msa1422840:CDS 25.0%
! TAAATATAAAGCAAGACACA+AGG - tig0025489:55187-55206 None:intergenic 25.0%
!! GAGAAATTTGTTTAAATCGT+TGG - tig0025489:54260-54279 None:intergenic 25.0%
!! GGATAATTGTTTGAAACTAT+TGG - tig0025489:54305-54324 None:intergenic 25.0%
!!! AAAAATCGAATTTTTCGGAT+AGG + tig0025489:54440-54459 Msa1422840:CDS 25.0%
!!! AAAATCGAATTTTTCGGATA+GGG + tig0025489:54441-54460 Msa1422840:CDS 25.0%
!!! ATTTTGGTTTCTCTATGTAA+TGG + tig0025489:54775-54794 Msa1422840:CDS 25.0%
! TATCTTCAGAAATTCAGAAA+TGG + tig0025489:54904-54923 Msa1422840:CDS 25.0%
! AATATCAGAAGGTTTGAAAA+GGG + tig0025489:55077-55096 Msa1422840:CDS 25.0%
! TAAATATAAAGCAAGACACA+AGG - tig0025489:55187-55206 None:intergenic 25.0%
ATTATCCAAAATTGCCATGT+CGG + tig0025489:54318-54337 Msa1422840:CDS 30.0%
GTTTCAAAGTCTTTAACACA+GGG + tig0025489:54367-54386 Msa1422840:CDS 30.0%
! TTTAACACAGGGAATTTTGA+TGG + tig0025489:54378-54397 Msa1422840:CDS 30.0%
!! TTAACACAGGGAATTTTGAT+GGG + tig0025489:54379-54398 Msa1422840:CDS 30.0%
TTTGAAAAACCCTTGGAAAT+TGG + tig0025489:54412-54431 Msa1422840:CDS 30.0%
! TGCGGAAAAATCGAATTTTT+CGG + tig0025489:54435-54454 Msa1422840:CDS 30.0%
!! TTTTGCTAGGAATTTGGTTT+TGG + tig0025489:54522-54541 Msa1422840:CDS 30.0%
!!! TTTGCTAGGAATTTGGTTTT+GGG + tig0025489:54523-54542 Msa1422840:CDS 30.0%
! GAAGTTGGAAAATGTTGATT+CGG + tig0025489:54555-54574 Msa1422840:CDS 30.0%
!! AAGTTGGAAAATGTTGATTC+GGG + tig0025489:54556-54575 Msa1422840:CDS 30.0%
! TGATTTGTGATGAAAAGTGT+GGG + tig0025489:54614-54633 Msa1422840:CDS 30.0%
! ACCTATGATGAAATTTTTGC+TGG + tig0025489:54715-54734 Msa1422840:CDS 30.0%
TCCAGCAAAAATTTCATCAT+AGG - tig0025489:54719-54738 None:intergenic 30.0%
TTTGGTTAAAACATCTCATC+AGG + tig0025489:54810-54829 Msa1422840:CDS 30.0%
! CTCAAATCAGATTTACCTTT+TGG - tig0025489:54847-54866 None:intergenic 30.0%
! AATTTCTGAAGATAAGCTTC+CGG - tig0025489:54898-54917 None:intergenic 30.0%
CATTTGTGGAGTTTATGTTA+TGG + tig0025489:55052-55071 Msa1422840:CDS 30.0%
ATGTTATGGAGAATATCAGA+AGG + tig0025489:55066-55085 Msa1422840:CDS 30.0%
GAATATCAGAAGGTTTGAAA+AGG + tig0025489:55076-55095 Msa1422840:CDS 30.0%
ATATCAGAAGGTTTGAAAAG+GGG + tig0025489:55078-55097 Msa1422840:CDS 30.0%
!! TTTGAAAAGGGGTGTTAATA+AGG + tig0025489:55089-55108 Msa1422840:CDS 30.0%
ATGCAAGTTGTTAGATATGT+AGG + tig0025489:55138-55157 Msa1422840:CDS 30.0%
ATTATCCAAAATTGCCATGT+CGG + tig0025489:54318-54337 Msa1422840:CDS 30.0%
GTTTCAAAGTCTTTAACACA+GGG + tig0025489:54367-54386 Msa1422840:CDS 30.0%
! TTTAACACAGGGAATTTTGA+TGG + tig0025489:54378-54397 Msa1422840:CDS 30.0%
!! TTAACACAGGGAATTTTGAT+GGG + tig0025489:54379-54398 Msa1422840:CDS 30.0%
TTTGAAAAACCCTTGGAAAT+TGG + tig0025489:54412-54431 Msa1422840:CDS 30.0%
! TGCGGAAAAATCGAATTTTT+CGG + tig0025489:54435-54454 Msa1422840:CDS 30.0%
!! TTTTGCTAGGAATTTGGTTT+TGG + tig0025489:54522-54541 Msa1422840:CDS 30.0%
!!! TTTGCTAGGAATTTGGTTTT+GGG + tig0025489:54523-54542 Msa1422840:CDS 30.0%
! GAAGTTGGAAAATGTTGATT+CGG + tig0025489:54555-54574 Msa1422840:CDS 30.0%
!! AAGTTGGAAAATGTTGATTC+GGG + tig0025489:54556-54575 Msa1422840:CDS 30.0%
! TGATTTGTGATGAAAAGTGT+GGG + tig0025489:54614-54633 Msa1422840:CDS 30.0%
! ACCTATGATGAAATTTTTGC+TGG + tig0025489:54715-54734 Msa1422840:CDS 30.0%
TCCAGCAAAAATTTCATCAT+AGG - tig0025489:54719-54738 None:intergenic 30.0%
TTTGGTTAAAACATCTCATC+AGG + tig0025489:54810-54829 Msa1422840:CDS 30.0%
! CTCAAATCAGATTTACCTTT+TGG - tig0025489:54847-54866 None:intergenic 30.0%
! AATTTCTGAAGATAAGCTTC+CGG - tig0025489:54898-54917 None:intergenic 30.0%
CATTTGTGGAGTTTATGTTA+TGG + tig0025489:55052-55071 Msa1422840:CDS 30.0%
ATGTTATGGAGAATATCAGA+AGG + tig0025489:55066-55085 Msa1422840:CDS 30.0%
GAATATCAGAAGGTTTGAAA+AGG + tig0025489:55076-55095 Msa1422840:CDS 30.0%
ATATCAGAAGGTTTGAAAAG+GGG + tig0025489:55078-55097 Msa1422840:CDS 30.0%
!! TTTGAAAAGGGGTGTTAATA+AGG + tig0025489:55089-55108 Msa1422840:CDS 30.0%
ATGCAAGTTGTTAGATATGT+AGG + tig0025489:55138-55157 Msa1422840:CDS 30.0%
TGTTTACGTGAGAAATTGAG+TGG - tig0025489:54064-54083 None:intergenic 35.0%
!! CGATTAGGATAAGTCGTTTT+TGG - tig0025489:54087-54106 None:intergenic 35.0%
! TGGCGTTTTTGAACTACATA+GGG - tig0025489:54157-54176 None:intergenic 35.0%
ATCGTTGGAAACGATTGAAA+CGG - tig0025489:54245-54264 None:intergenic 35.0%
GGTTTCAAAGTCTTTAACAC+AGG + tig0025489:54366-54385 Msa1422840:CDS 35.0%
!! TAACACAGGGAATTTTGATG+GGG + tig0025489:54380-54399 Msa1422840:CDS 35.0%
TGGTGAATTTGAAAAACCCT+TGG + tig0025489:54405-54424 Msa1422840:CDS 35.0%
! TGGAAGTTTTGCTAGGAATT+TGG + tig0025489:54516-54535 Msa1422840:CDS 35.0%
!! AGTTGGAAAATGTTGATTCG+GGG + tig0025489:54557-54576 Msa1422840:CDS 35.0%
TCGAAATCTGATGGTATTTC+TGG + tig0025489:54580-54599 Msa1422840:CDS 35.0%
! GTGATTTGTGATGAAAAGTG+TGG + tig0025489:54613-54632 Msa1422840:CDS 35.0%
! AAAAGTGTGGGAAGGTTATA+GGG + tig0025489:54626-54645 Msa1422840:CDS 35.0%
!!! CAGGTTTTGACTAATCCAAA+AGG + tig0025489:54829-54848 Msa1422840:CDS 35.0%
! AATCTGATTTGAGTTCACCT+AGG + tig0025489:54854-54873 Msa1422840:CDS 35.0%
! ATCTGATTTGAGTTCACCTA+GGG + tig0025489:54855-54874 Msa1422840:CDS 35.0%
!! TACATATTTTGGGTGGTAGT+AGG + tig0025489:55205-55224 Msa1422840:CDS 35.0%
TGTTTACGTGAGAAATTGAG+TGG - tig0025489:54064-54083 None:intergenic 35.0%
!! CGATTAGGATAAGTCGTTTT+TGG - tig0025489:54087-54106 None:intergenic 35.0%
! TGGCGTTTTTGAACTACATA+GGG - tig0025489:54157-54176 None:intergenic 35.0%
ATCGTTGGAAACGATTGAAA+CGG - tig0025489:54245-54264 None:intergenic 35.0%
GGTTTCAAAGTCTTTAACAC+AGG + tig0025489:54366-54385 Msa1422840:CDS 35.0%
!! TAACACAGGGAATTTTGATG+GGG + tig0025489:54380-54399 Msa1422840:CDS 35.0%
TGGTGAATTTGAAAAACCCT+TGG + tig0025489:54405-54424 Msa1422840:CDS 35.0%
! TGGAAGTTTTGCTAGGAATT+TGG + tig0025489:54516-54535 Msa1422840:CDS 35.0%
!! AGTTGGAAAATGTTGATTCG+GGG + tig0025489:54557-54576 Msa1422840:CDS 35.0%
TCGAAATCTGATGGTATTTC+TGG + tig0025489:54580-54599 Msa1422840:CDS 35.0%
! GTGATTTGTGATGAAAAGTG+TGG + tig0025489:54613-54632 Msa1422840:CDS 35.0%
! AAAAGTGTGGGAAGGTTATA+GGG + tig0025489:54626-54645 Msa1422840:CDS 35.0%
!!! CAGGTTTTGACTAATCCAAA+AGG + tig0025489:54829-54848 Msa1422840:CDS 35.0%
! AATCTGATTTGAGTTCACCT+AGG + tig0025489:54854-54873 Msa1422840:CDS 35.0%
! ATCTGATTTGAGTTCACCTA+GGG + tig0025489:54855-54874 Msa1422840:CDS 35.0%
!! TACATATTTTGGGTGGTAGT+AGG + tig0025489:55205-55224 Msa1422840:CDS 35.0%
! CTTATCCTAATCGCGCTTTT+AGG + tig0025489:54094-54113 Msa1422840:CDS 40.0%
! AGAATCCTAAAAGCGCGATT+AGG - tig0025489:54102-54121 None:intergenic 40.0%
!!! CTTTTAGGATTCTCCGGTTA+CGG + tig0025489:54109-54128 Msa1422840:CDS 40.0%
! AGCTTTATAAGCACCGTAAC+CGG - tig0025489:54125-54144 None:intergenic 40.0%
! GTGGCGTTTTTGAACTACAT+AGG - tig0025489:54158-54177 None:intergenic 40.0%
!! AACGAAAGCTTTGAGAAGCT+TGG - tig0025489:54188-54207 None:intergenic 40.0%
AACGATTGAAACGGTTTCTG+CGG - tig0025489:54236-54255 None:intergenic 40.0%
TATCGAAAATTCCTCCGACA+TGG - tig0025489:54335-54354 None:intergenic 40.0%
AAAACCCTTGGAAATTGGTG+CGG + tig0025489:54417-54436 Msa1422840:CDS 40.0%
! TTTTCCGCACCAATTTCCAA+GGG - tig0025489:54424-54443 None:intergenic 40.0%
! TTTTTCCGCACCAATTTCCA+AGG - tig0025489:54425-54444 None:intergenic 40.0%
!! GAATTTTTCGGATAGGGTGT+TGG + tig0025489:54447-54466 Msa1422840:CDS 40.0%
GTTGGATAAGCTTATGTCTG+AGG + tig0025489:54465-54484 Msa1422840:CDS 40.0%
! TTGTGGTTGGAAGTTTTGCT+AGG + tig0025489:54509-54528 Msa1422840:CDS 40.0%
!! TTTGGGTTTTCGTACGAAGT+TGG + tig0025489:54540-54559 Msa1422840:CDS 40.0%
! TTGTGATGAAAAGTGTGGGA+AGG + tig0025489:54618-54637 Msa1422840:CDS 40.0%
! GAAAAGTGTGGGAAGGTTAT+AGG + tig0025489:54625-54644 Msa1422840:CDS 40.0%
AAAGTGTGGGAAGGTTATAG+GGG + tig0025489:54627-54646 Msa1422840:CDS 40.0%
GAATCCAAAACACCACGAAA+AGG + tig0025489:54744-54763 Msa1422840:CDS 40.0%
! TTCACCTTTTCGTGGTGTTT+TGG - tig0025489:54751-54770 None:intergenic 40.0%
AAAACACCACGAAAAGGTGA+AGG + tig0025489:54750-54769 Msa1422840:CDS 40.0%
AAACACCACGAAAAGGTGAA+GGG + tig0025489:54751-54770 Msa1422840:CDS 40.0%
! AAATTCCCTTCACCTTTTCG+TGG - tig0025489:54759-54778 None:intergenic 40.0%
! CGAAAAGGTGAAGGGAATTT+TGG + tig0025489:54759-54778 Msa1422840:CDS 40.0%
!! TAATGGTGCTGTTGAGACTT+TGG + tig0025489:54792-54811 Msa1422840:CDS 40.0%
TTGAGTTCACCTAGGGAAAA+TGG + tig0025489:54862-54881 Msa1422840:CDS 40.0%
TGAGTTCACCTAGGGAAAAT+GGG + tig0025489:54863-54882 Msa1422840:CDS 40.0%
AGAAATGGAAGCTCTGTTGA+TGG + tig0025489:54919-54938 Msa1422840:CDS 40.0%
! CATGATGACGTTGTAGACAA+AGG + tig0025489:55114-55133 Msa1422840:CDS 40.0%
ATATGTAGGAGCTAAGTCGT+CGG + tig0025489:55152-55171 Msa1422840:CDS 40.0%
! CTTATCCTAATCGCGCTTTT+AGG + tig0025489:54094-54113 Msa1422840:CDS 40.0%
! AGAATCCTAAAAGCGCGATT+AGG - tig0025489:54102-54121 None:intergenic 40.0%
!!! CTTTTAGGATTCTCCGGTTA+CGG + tig0025489:54109-54128 Msa1422840:CDS 40.0%
! AGCTTTATAAGCACCGTAAC+CGG - tig0025489:54125-54144 None:intergenic 40.0%
! GTGGCGTTTTTGAACTACAT+AGG - tig0025489:54158-54177 None:intergenic 40.0%
!! AACGAAAGCTTTGAGAAGCT+TGG - tig0025489:54188-54207 None:intergenic 40.0%
AACGATTGAAACGGTTTCTG+CGG - tig0025489:54236-54255 None:intergenic 40.0%
TATCGAAAATTCCTCCGACA+TGG - tig0025489:54335-54354 None:intergenic 40.0%
AAAACCCTTGGAAATTGGTG+CGG + tig0025489:54417-54436 Msa1422840:CDS 40.0%
! TTTTCCGCACCAATTTCCAA+GGG - tig0025489:54424-54443 None:intergenic 40.0%
! TTTTTCCGCACCAATTTCCA+AGG - tig0025489:54425-54444 None:intergenic 40.0%
!! GAATTTTTCGGATAGGGTGT+TGG + tig0025489:54447-54466 Msa1422840:CDS 40.0%
GTTGGATAAGCTTATGTCTG+AGG + tig0025489:54465-54484 Msa1422840:CDS 40.0%
! TTGTGGTTGGAAGTTTTGCT+AGG + tig0025489:54509-54528 Msa1422840:CDS 40.0%
!! TTTGGGTTTTCGTACGAAGT+TGG + tig0025489:54540-54559 Msa1422840:CDS 40.0%
! TTGTGATGAAAAGTGTGGGA+AGG + tig0025489:54618-54637 Msa1422840:CDS 40.0%
! GAAAAGTGTGGGAAGGTTAT+AGG + tig0025489:54625-54644 Msa1422840:CDS 40.0%
AAAGTGTGGGAAGGTTATAG+GGG + tig0025489:54627-54646 Msa1422840:CDS 40.0%
GAATCCAAAACACCACGAAA+AGG + tig0025489:54744-54763 Msa1422840:CDS 40.0%
! TTCACCTTTTCGTGGTGTTT+TGG - tig0025489:54751-54770 None:intergenic 40.0%
AAAACACCACGAAAAGGTGA+AGG + tig0025489:54750-54769 Msa1422840:CDS 40.0%
AAACACCACGAAAAGGTGAA+GGG + tig0025489:54751-54770 Msa1422840:CDS 40.0%
! AAATTCCCTTCACCTTTTCG+TGG - tig0025489:54759-54778 None:intergenic 40.0%
! CGAAAAGGTGAAGGGAATTT+TGG + tig0025489:54759-54778 Msa1422840:CDS 40.0%
!! TAATGGTGCTGTTGAGACTT+TGG + tig0025489:54792-54811 Msa1422840:CDS 40.0%
TTGAGTTCACCTAGGGAAAA+TGG + tig0025489:54862-54881 Msa1422840:CDS 40.0%
TGAGTTCACCTAGGGAAAAT+GGG + tig0025489:54863-54882 Msa1422840:CDS 40.0%
AGAAATGGAAGCTCTGTTGA+TGG + tig0025489:54919-54938 Msa1422840:CDS 40.0%
! CATGATGACGTTGTAGACAA+AGG + tig0025489:55114-55133 Msa1422840:CDS 40.0%
ATATGTAGGAGCTAAGTCGT+CGG + tig0025489:55152-55171 Msa1422840:CDS 40.0%
!!! ATCGCGCTTTTAGGATTCTC+CGG + tig0025489:54103-54122 Msa1422840:CDS 45.0%
! CTTTGAGAAGCTTGGTGAAG+CGG - tig0025489:54180-54199 None:intergenic 45.0%
ATCCAAAATTGCCATGTCGG+AGG + tig0025489:54321-54340 Msa1422840:CDS 45.0%
! TTCCTCCGACATGGCAATTT+TGG - tig0025489:54326-54345 None:intergenic 45.0%
!! CAGGGAATTTTGATGGGGTA+TGG + tig0025489:54385-54404 Msa1422840:CDS 45.0%
! GATAAGCTTATGTCTGAGGC+TGG + tig0025489:54469-54488 Msa1422840:CDS 45.0%
! TTATGTCTGAGGCTGGAACT+GGG + tig0025489:54476-54495 Msa1422840:CDS 45.0%
! AACTGGGTTTGTTTCGGTTG+TGG + tig0025489:54492-54511 Msa1422840:CDS 45.0%
! GGATTGTGTGCAGACTTTTG+TGG + tig0025489:54648-54667 Msa1422840:CDS 45.0%
! TTCAAACGCCCATTTTCCCT+AGG - tig0025489:54874-54893 None:intergenic 45.0%
! GGAAAATGGGCGTTTGAAAC+CGG + tig0025489:54876-54895 Msa1422840:CDS 45.0%
! GAAGCTCTGTTGATGGAGTT+GGG + tig0025489:54926-54945 Msa1422840:CDS 45.0%
! AAGCTCTGTTGATGGAGTTG+GGG + tig0025489:54927-54946 Msa1422840:CDS 45.0%
TTGATGGAGTTGGGGATTCT+GGG + tig0025489:54935-54954 Msa1422840:CDS 45.0%
TGACATCAAGCACAAACCTC+TGG - tig0025489:55002-55021 None:intergenic 45.0%
GAGGTTTGTGCTTGATGTCA+CGG + tig0025489:55002-55021 Msa1422840:CDS 45.0%
AGGTTTGTGCTTGATGTCAC+GGG + tig0025489:55003-55022 Msa1422840:CDS 45.0%
GAGTGACATTCGAAACTGTG+AGG + tig0025489:55028-55047 Msa1422840:CDS 45.0%
CGAAACTGTGAGGTCATTTG+TGG + tig0025489:55038-55057 Msa1422840:CDS 45.0%
!!! ATCGCGCTTTTAGGATTCTC+CGG + tig0025489:54103-54122 Msa1422840:CDS 45.0%
! CTTTGAGAAGCTTGGTGAAG+CGG - tig0025489:54180-54199 None:intergenic 45.0%
ATCCAAAATTGCCATGTCGG+AGG + tig0025489:54321-54340 Msa1422840:CDS 45.0%
! TTCCTCCGACATGGCAATTT+TGG - tig0025489:54326-54345 None:intergenic 45.0%
!! CAGGGAATTTTGATGGGGTA+TGG + tig0025489:54385-54404 Msa1422840:CDS 45.0%
! GATAAGCTTATGTCTGAGGC+TGG + tig0025489:54469-54488 Msa1422840:CDS 45.0%
! TTATGTCTGAGGCTGGAACT+GGG + tig0025489:54476-54495 Msa1422840:CDS 45.0%
! AACTGGGTTTGTTTCGGTTG+TGG + tig0025489:54492-54511 Msa1422840:CDS 45.0%
! GGATTGTGTGCAGACTTTTG+TGG + tig0025489:54648-54667 Msa1422840:CDS 45.0%
! TTCAAACGCCCATTTTCCCT+AGG - tig0025489:54874-54893 None:intergenic 45.0%
! GGAAAATGGGCGTTTGAAAC+CGG + tig0025489:54876-54895 Msa1422840:CDS 45.0%
! GAAGCTCTGTTGATGGAGTT+GGG + tig0025489:54926-54945 Msa1422840:CDS 45.0%
! AAGCTCTGTTGATGGAGTTG+GGG + tig0025489:54927-54946 Msa1422840:CDS 45.0%
TTGATGGAGTTGGGGATTCT+GGG + tig0025489:54935-54954 Msa1422840:CDS 45.0%
TGACATCAAGCACAAACCTC+TGG - tig0025489:55002-55021 None:intergenic 45.0%
GAGGTTTGTGCTTGATGTCA+CGG + tig0025489:55002-55021 Msa1422840:CDS 45.0%
AGGTTTGTGCTTGATGTCAC+GGG + tig0025489:55003-55022 Msa1422840:CDS 45.0%
GAGTGACATTCGAAACTGTG+AGG + tig0025489:55028-55047 Msa1422840:CDS 45.0%
CGAAACTGTGAGGTCATTTG+TGG + tig0025489:55038-55057 Msa1422840:CDS 45.0%
TGAAACGGTTTCTGCGGAAC+TGG - tig0025489:54230-54249 None:intergenic 50.0%
! CTTATGTCTGAGGCTGGAAC+TGG + tig0025489:54475-54494 Msa1422840:CDS 50.0%
! GGCTGGAACTGGGTTTGTTT+CGG + tig0025489:54486-54505 Msa1422840:CDS 50.0%
! GGGTTTGTTTCGGTTGTGGT+TGG + tig0025489:54496-54515 Msa1422840:CDS 50.0%
GATTCGGGGTCGAAATCTGA+TGG + tig0025489:54571-54590 Msa1422840:CDS 50.0%
! GGAAGCTCTGTTGATGGAGT+TGG + tig0025489:54925-54944 Msa1422840:CDS 50.0%
! GTTGATGGAGTTGGGGATTC+TGG + tig0025489:54934-54953 Msa1422840:CDS 50.0%
TTTCTGTGCCAGCTAACCAG+AGG + tig0025489:54983-55002 Msa1422840:CDS 50.0%
AGCACAAACCTCTGGTTAGC+TGG - tig0025489:54994-55013 None:intergenic 50.0%
GGTTTGTGCTTGATGTCACG+GGG + tig0025489:55004-55023 Msa1422840:CDS 50.0%
GGGTGGTAGTAGGATTCTAG+TGG + tig0025489:55215-55234 Msa1422840:CDS 50.0%
TGAAACGGTTTCTGCGGAAC+TGG - tig0025489:54230-54249 None:intergenic 50.0%
! CTTATGTCTGAGGCTGGAAC+TGG + tig0025489:54475-54494 Msa1422840:CDS 50.0%
! GGCTGGAACTGGGTTTGTTT+CGG + tig0025489:54486-54505 Msa1422840:CDS 50.0%
! GGGTTTGTTTCGGTTGTGGT+TGG + tig0025489:54496-54515 Msa1422840:CDS 50.0%
GATTCGGGGTCGAAATCTGA+TGG + tig0025489:54571-54590 Msa1422840:CDS 50.0%
! GGAAGCTCTGTTGATGGAGT+TGG + tig0025489:54925-54944 Msa1422840:CDS 50.0%
! GTTGATGGAGTTGGGGATTC+TGG + tig0025489:54934-54953 Msa1422840:CDS 50.0%
TTTCTGTGCCAGCTAACCAG+AGG + tig0025489:54983-55002 Msa1422840:CDS 50.0%
AGCACAAACCTCTGGTTAGC+TGG - tig0025489:54994-55013 None:intergenic 50.0%
GGTTTGTGCTTGATGTCACG+GGG + tig0025489:55004-55023 Msa1422840:CDS 50.0%
GGGTGGTAGTAGGATTCTAG+TGG + tig0025489:55215-55234 Msa1422840:CDS 50.0%
! TGAGAAGCTTGGTGAAGCGG+TGG - tig0025489:54177-54196 None:intergenic 55.0%
ATGGAGTTGGGGATTCTGGG+TGG + tig0025489:54938-54957 Msa1422840:CDS 55.0%
GGATTCTGGGTGGCTTGAAC+AGG + tig0025489:54948-54967 Msa1422840:CDS 55.0%
! TGAGAAGCTTGGTGAAGCGG+TGG - tig0025489:54177-54196 None:intergenic 55.0%
ATGGAGTTGGGGATTCTGGG+TGG + tig0025489:54938-54957 Msa1422840:CDS 55.0%
GGATTCTGGGTGGCTTGAAC+AGG + tig0025489:54948-54967 Msa1422840:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0025489 gene 54052 55245 54052 ID=Msa1422840;Name=Msa1422840
tig0025489 mRNA 54052 55245 54052 ID=Msa1422840-mRNA-1;Parent=Msa1422840;Name=Msa1422840-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|397
tig0025489 exon 54052 55245 54052 ID=Msa1422840-mRNA-1:exon:2859;Parent=Msa1422840-mRNA-1
tig0025489 CDS 54052 55245 54052 ID=Msa1422840-mRNA-1:cds;Parent=Msa1422840-mRNA-1
Gene Sequence

>Msa1422840

ATGGAACTTCCACTCAATTTCTCACGTAAACACCAAAAACGACTTATCCTAATCGCGCTTTTAGGATTCTCCGGTTACGGTGCTTATAAAGCTTATCATTTACCCTATGTAGTTCAAAAACGCCACCGCTTCACCAAGCTTCTCAAAGCTTTCGTTTCTCTTGCAGAACTCGCTTCCAGTTCCGCAGAAACCGTTTCAATCGTTTCCAACGATTTAAACAAATTTCTCAAGTCTGATTCTGATGAAATTCCCAATAGTTTCAAACAATTATCCAAAATTGCCATGTCGGAGGAATTTTCGATAACAATTTCTAGGGTTTCAAAGTCTTTAACACAGGGAATTTTGATGGGGTATGGTGAATTTGAAAAACCCTTGGAAATTGGTGCGGAAAAATCGAATTTTTCGGATAGGGTGTTGGATAAGCTTATGTCTGAGGCTGGAACTGGGTTTGTTTCGGTTGTGGTTGGAAGTTTTGCTAGGAATTTGGTTTTGGGTTTTCGTACGAAGTTGGAAAATGTTGATTCGGGGTCGAAATCTGATGGTATTTCTGGATTTGTGAGTGTGATTTGTGATGAAAAGTGTGGGAAGGTTATAGGGGATTGTGTGCAGACTTTTGTGGCTACTGCTGTTGCTGTTTTTCTTGATAAAACAATGGATGTTAACACCTATGATGAAATTTTTGCTGGAATGACGAATCCAAAACACCACGAAAAGGTGAAGGGAATTTTGGTTTCTCTATGTAATGGTGCTGTTGAGACTTTGGTTAAAACATCTCATCAGGTTTTGACTAATCCAAAAGGTAAATCTGATTTGAGTTCACCTAGGGAAAATGGGCGTTTGAAACCGGAAGCTTATCTTCAGAAATTCAGAAATGGAAGCTCTGTTGATGGAGTTGGGGATTCTGGGTGGCTTGAACAGGTTAAATCAACTCTTTCTGTGCCAGCTAACCAGAGGTTTGTGCTTGATGTCACGGGGAGAGTGACATTCGAAACTGTGAGGTCATTTGTGGAGTTTATGTTATGGAGAATATCAGAAGGTTTGAAAAGGGGTGTTAATAAGGTTCATGATGACGTTGTAGACAAAGGAATGCAAGTTGTTAGATATGTAGGAGCTAAGTCGTCGGTTATTATTACCTTGTGTCTTGCTTTATATTTACATATTTTGGGTGGTAGTAGGATTCTAGTGGCTGCTTAG

Protein sequence

>Msa1422840

MELPLNFSRKHQKRLILIALLGFSGYGAYKAYHLPYVVQKRHRFTKLLKAFVSLAELASSSAETVSIVSNDLNKFLKSDSDEIPNSFKQLSKIAMSEEFSITISRVSKSLTQGILMGYGEFEKPLEIGAEKSNFSDRVLDKLMSEAGTGFVSVVVGSFARNLVLGFRTKLENVDSGSKSDGISGFVSVICDEKCGKVIGDCVQTFVATAVAVFLDKTMDVNTYDEIFAGMTNPKHHEKVKGILVSLCNGAVETLVKTSHQVLTNPKGKSDLSSPRENGRLKPEAYLQKFRNGSSVDGVGDSGWLEQVKSTLSVPANQRFVLDVTGRVTFETVRSFVEFMLWRISEGLKRGVNKVHDDVVDKGMQVVRYVGAKSSVIITLCLALYLHILGGSRILVAA*