AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0098390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098390 MtrunA17_Chr1g0151761 91.975 648 25 4 1 642 1 627 0.0 1052
Msa0098390 MtrunA17_Chr3g0135621 62.593 671 156 19 1 642 1 605 0.0 628
Msa0098390 MtrunA17_Chr3g0135631 66.334 401 102 10 229 612 1 385 8.41e-134 398
Msa0098390 MtrunA17_Chr3g0135641 58.407 226 46 7 1 215 1 189 5.60e-67 218
Msa0098390 MtrunA17_Chr5g0396111 56.213 169 70 2 112 276 185 353 3.98e-57 197
Msa0098390 MtrunA17_Chr5g0396111 45.070 71 38 1 115 184 284 354 8.67e-11 64.3
Msa0098390 MtrunA17_Chr7g0217251 28.906 256 134 12 112 353 169 390 2.11e-14 76.6
Msa0098390 MtrunA17_Chr1g0197441 28.641 206 122 6 115 307 39 232 9.36e-13 70.1
Msa0098390 MtrunA17_Chr4g0049801 29.747 158 87 5 122 267 30 175 5.83e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098390 AT2G25970.1 52.782 665 195 33 1 611 1 600 1.34e-142 429
Msa0098390 AT4G10070.1 44.882 254 125 7 110 353 174 422 3.21e-54 197
Msa0098390 AT1G33680.1 36.464 543 266 25 110 618 230 727 4.86e-52 192
Msa0098390 AT5G04430.2 27.653 311 158 12 69 366 9 265 8.51e-16 79.7
Msa0098390 AT5G04430.1 29.817 218 115 8 69 279 9 195 6.63e-14 73.6

Find 278 sgRNAs with CRISPR-Local

Find 531 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAGGCCCACCTTGTTATT+TGG 0.118001 1_3:+4317789 None:intergenic
GTTCGTCGTACTTGCGTTTC+AGG 0.131446 1_3:+4319532 None:intergenic
ACTAATCTATTTGGAGAATT+AGG 0.181216 1_3:+4318479 None:intergenic
GGAAGGGTTGGTGTTATTAT+TGG 0.182914 1_3:-4318581 Msa0098390:CDS
ATGTAAACTTGCTAAATATT+TGG 0.204121 1_3:-4312994 Msa0098390:three_prime_UTR
GTAAGCTCAACTAATCTATT+TGG 0.259507 1_3:+4318470 None:intergenic
AGGAGGACCGTTGTCGAATT+TGG 0.260354 1_3:+4319335 None:intergenic
CTTTCAGTGGATGTGTCGCC+TGG 0.292557 1_3:+4317355 None:intergenic
CTTGTTATTTGGAATCTTCA+TGG 0.296247 1_3:+4317800 None:intergenic
GCTCTTTGAGAGCCTGCTTC+TGG 0.301980 1_3:+4313406 None:intergenic
AATAGATTAGTTGAGCTTAC+TGG 0.304836 1_3:-4318467 Msa0098390:CDS
TCAGCCATTGGAACTGGAAT+TGG 0.310054 1_3:+4319585 None:intergenic
TACAACTGGAGCAAGAATTC+AGG 0.310281 1_3:-4317621 Msa0098390:intron
AAATCAGCGGTGGCGGGAGG+GGG 0.314498 1_3:+4319441 None:intergenic
CCTAATGCTGCTGGAGGTTA+TGG 0.319168 1_3:-4313478 Msa0098390:CDS
GGTGGATAGTTGGCAGCATT+TGG 0.321788 1_3:+4313646 None:intergenic
AATCCAAGTTACCCGTGATA+TGG 0.322309 1_3:-4318510 Msa0098390:CDS
ATCCATAGTTGGTGGTAGTT+TGG 0.325878 1_3:+4313743 None:intergenic
GAAATCAGCGGTGGCGGGAG+GGG 0.335247 1_3:+4319440 None:intergenic
GCCTGCTGAGCTCCCTGTGC+AGG 0.353119 1_3:+4313199 None:intergenic
AAGCTCGGCCACCCTCTAGC+TGG 0.354172 1_3:-4314191 Msa0098390:CDS
GGCCAAACTACCACCAACTA+TGG 0.354270 1_3:-4313745 Msa0098390:CDS
TTGAGAGCCTGCTTCTGGTT+GGG 0.355943 1_3:+4313411 None:intergenic
ATAACACCAACCCTTCCATT+AGG 0.362493 1_3:+4318587 None:intergenic
CATCCATATCACGGGTAACT+TGG 0.363155 1_3:+4318507 None:intergenic
TCTTGAGCTGACCCATAGCT+TGG 0.369291 1_3:+4313769 None:intergenic
TCTCAAAGAGCACCACCTTC+TGG 0.375855 1_3:-4313394 Msa0098390:CDS
CCTCAAACACAGTCTGGTTA+TGG 0.378826 1_3:-4313559 Msa0098390:CDS
TAACACCAACCCTTCCATTA+GGG 0.380545 1_3:+4318588 None:intergenic
CTTGCTGAGGCACATTGTAC+TGG 0.386367 1_3:+4314097 None:intergenic
CTGGTGGATATTCTACCAAT+TGG 0.388293 1_3:-4314047 Msa0098390:CDS
GTCCCATCAGCTGGAGGTGC+AGG 0.392215 1_3:+4313943 None:intergenic
CAGCATTTGGGCTAGGCTGT+TGG 0.392417 1_3:+4313659 None:intergenic
TATGATCAGCAGCAAATCTA+TGG 0.393101 1_3:-4313799 Msa0098390:CDS
CTTGAGCTGACCCATAGCTT+GGG 0.393959 1_3:+4313770 None:intergenic
GGGGCTGCTCAGCCAAGTTA+TGG 0.394510 1_3:-4313619 Msa0098390:CDS
ATCCGCTGGTTATAACCAAC+CGG 0.399371 1_3:-4313896 Msa0098390:CDS
GCTTCTCAACAACCTGGTTA+TGG 0.399715 1_3:-4314156 Msa0098390:CDS
CCATATGCTGCTTGGGAGGT+TGG 0.401024 1_3:+4313589 None:intergenic
CAATCTCAAAGTTGCAAAGC+TGG 0.401440 1_3:+4313075 None:intergenic
AATTGAATCTGCAAAACAAT+TGG 0.402759 1_3:-4317302 Msa0098390:CDS
CCATAACCTCCAGCAGCATT+AGG 0.408998 1_3:+4313478 None:intergenic
AGAGCACCACCTTCTGGTTA+TGG 0.409292 1_3:-4313388 Msa0098390:CDS
TGAGTCTGTGTCACGTGTTT+TGG 0.411293 1_3:+4319668 None:intergenic
ACCTGCACAGGGAGCTCAGC+AGG 0.412517 1_3:-4313200 Msa0098390:CDS
ACCACCAACTATGGATCAAA+AGG 0.413986 1_3:-4313736 Msa0098390:CDS
CAGGCTGAGTCTGGAGGTAA+TGG 0.416113 1_3:-4317870 Msa0098390:CDS
GAAGAAACCCTAGCTGTAGC+TGG 0.416806 1_3:+4319626 None:intergenic
TTGGCTGCCATATGCTGCTT+GGG 0.417515 1_3:+4313582 None:intergenic
AAGAGTATGCAAGCTACAAC+TGG 0.418295 1_3:-4317635 Msa0098390:CDS
GCTGGGCAGTTGCAGTGGAC+TGG 0.419977 1_3:+4314022 None:intergenic
CCAACCTCCCAAGCAGCATA+TGG 0.421508 1_3:-4313589 Msa0098390:CDS
TATCAACAACCACCACAATC+AGG 0.423047 1_3:-4313841 Msa0098390:CDS
AGGAGGTCCGTCGGAGAAAC+CGG 0.425705 1_3:+4319485 None:intergenic
GTTGGTGTTATTATTGGAAA+AGG 0.426073 1_3:-4318575 Msa0098390:CDS
GGGCTGCTCAGCCAAGTTAT+GGG 0.426222 1_3:-4313618 Msa0098390:CDS
AATCAGCGGTGGCGGGAGGG+GGG 0.427004 1_3:+4319442 None:intergenic
GGTCCTGCACCTCCAGCTGA+TGG 0.427874 1_3:-4313946 Msa0098390:CDS
GTCGCCGCTCGTCTCCTCTC+TGG 0.429663 1_3:-4319390 Msa0098390:CDS
GGTTATGGTCCTCCATCATA+TGG 0.431553 1_3:-4313373 Msa0098390:CDS
CTTGTTACTCGACGAATGAC+TGG 0.434663 1_3:-4317846 Msa0098390:CDS
AAGGTTGGACAGGTGGAACT+TGG 0.436476 1_3:+4313704 None:intergenic
GTGGATAGTTGGCAGCATTT+GGG 0.441115 1_3:+4313647 None:intergenic
GCAGGCGGTCAACCTGGTTA+TGG 0.441342 1_3:-4313328 Msa0098390:CDS
GAGTAACCACCGGACATTGA+TGG 0.441729 1_3:+4314228 None:intergenic
TTCGTCGTACTTGCGTTTCA+GGG 0.443304 1_3:+4319533 None:intergenic
AGCTAGAGGGTGGCCGAGCT+TGG 0.443328 1_3:+4314193 None:intergenic
AGCTCGGCCACCCTCTAGCT+GGG 0.447088 1_3:-4314190 Msa0098390:CDS
CCATAACCAGACTGTGTTTG+AGG 0.447473 1_3:+4313559 None:intergenic
GATTCGTCAGCCATTGGAAC+TGG 0.447562 1_3:+4319579 None:intergenic
CTACAGGTTGGTCTTATAAT+CGG 0.447978 1_3:-4317677 Msa0098390:intron
CCGTCATATGGTGCTCCTGC+AGG 0.448573 1_3:-4313346 Msa0098390:CDS
GGTGTTATTATTGGAAAAGG+TGG 0.450115 1_3:-4318572 Msa0098390:CDS
AAGAAGATTGAAATCCCTAA+TGG 0.454062 1_3:-4318602 Msa0098390:CDS
GTTGGCTGCCATATGCTGCT+TGG 0.454556 1_3:+4313581 None:intergenic
GAGTTCGAAATCAGCGGTGG+CGG 0.458495 1_3:+4319434 None:intergenic
CTCCCTCTGATGTCGTCAAA+CGG 0.458508 1_3:-4319359 Msa0098390:CDS
TCGTACTTGCGTTTCAGGGA+AGG 0.461758 1_3:+4319537 None:intergenic
TTTGAGAGCCTGCTTCTGGT+TGG 0.462877 1_3:+4313410 None:intergenic
ATTGGAACTGGAATTGGAAT+CGG 0.465357 1_3:+4319591 None:intergenic
TCATATGGTCCTCCGTCATA+TGG 0.465714 1_3:-4313358 Msa0098390:CDS
AAGTATCTTCAGTTGCAATC+TGG 0.466830 1_3:-4318539 Msa0098390:CDS
CAACCTTCACAACAAGGTTA+TGG 0.467298 1_3:-4313688 Msa0098390:CDS
CTCAGCAAGGTTACCAAGCT+CGG 0.468815 1_3:-4314206 Msa0098390:CDS
CCTTCCCCTTACGATTCATC+AGG 0.470277 1_3:-4319315 Msa0098390:intron
CGAAATCAGCGGTGGCGGGA+GGG 0.470982 1_3:+4319439 None:intergenic
GGTTATCCTCCCCACTCAGC+TGG 0.471437 1_3:-4314066 Msa0098390:CDS
GTCCTGCACCTCCAGCTGAT+GGG 0.471850 1_3:-4313945 Msa0098390:CDS
CTAGCTGTAGCTGGGGATAG+AGG 0.475104 1_3:+4319635 None:intergenic
CAGGCACCACATGGTTCCTA+TGG 0.475333 1_3:-4313304 Msa0098390:CDS
TAGTTGGCAGCATTTGGGCT+AGG 0.476978 1_3:+4313652 None:intergenic
AGCCCCTTGTGGTGGATAGT+TGG 0.478569 1_3:+4313636 None:intergenic
GCTCCTGCAGGCGGTCAACC+TGG 0.480776 1_3:-4313334 Msa0098390:CDS
GCTGGAGGTTATGGTCAACC+TGG 0.480952 1_3:-4313469 Msa0098390:CDS
CCACATGGTTCCTATGGTGC+TGG 0.481020 1_3:-4313298 Msa0098390:CDS
CATAACCTTGTTGTGAAGGT+TGG 0.482142 1_3:+4313689 None:intergenic
TGCAGTGGACTGGTCCCAAT+TGG 0.482391 1_3:+4314032 None:intergenic
TATGGCTCAGCCCCAAGCTA+TGG 0.483146 1_3:-4313781 Msa0098390:CDS
GCCCGTGGTGGTAGCTATGA+TGG 0.484526 1_3:-4313226 Msa0098390:CDS
TGGTTATAACCAACCGGGGC+AGG 0.484946 1_3:-4313890 Msa0098390:CDS
TATTGCGATTCGTCAGCCAT+TGG 0.486803 1_3:+4319573 None:intergenic
TTTCAGTGGATGTGTCGCCT+GGG 0.488134 1_3:+4317356 None:intergenic
TGCTGCTGATCATATGATGT+TGG 0.488312 1_3:+4313808 None:intergenic
AGAATATCCACCAGCTGAGT+GGG 0.492850 1_3:+4314056 None:intergenic
CTATGATGGAGCACCTGCAC+AGG 0.493101 1_3:-4313212 Msa0098390:CDS
CTATGGTGCTGGTTATCCTC+AGG 0.495560 1_3:-4313287 Msa0098390:CDS
TGGTGGATATTCTACCAATT+GGG 0.499810 1_3:-4314046 Msa0098390:CDS
GTTGCAAAGCTGGGTAGGTA+AGG 0.500397 1_3:+4313085 None:intergenic
TCGAAATCAGCGGTGGCGGG+AGG 0.502438 1_3:+4319438 None:intergenic
TACCATCAGCAGAATATGCT+GGG 0.503201 1_3:+4313263 None:intergenic
CCACCAACTATGGATCAAAA+GGG 0.503822 1_3:-4313735 Msa0098390:CDS
CCTCAGCAACAGCAGAATCC+TGG 0.504044 1_3:-4313970 Msa0098390:CDS
AATAATCATAGGTAGACTGC+TGG 0.504119 1_3:+4314004 None:intergenic
GGCACATTGTACTGGGAAGT+TGG 0.504619 1_3:+4314105 None:intergenic
CGGTCAACCTGGTTATGGTC+AGG 0.506940 1_3:-4313323 Msa0098390:CDS
CTGTTGATTATAATAATCAT+AGG 0.509838 1_3:+4313993 None:intergenic
TTGTACTGGGAAGTTGGACC+AGG 0.509939 1_3:+4314111 None:intergenic
AGCCAACCTCAAACACAGTC+TGG 0.515940 1_3:-4313565 Msa0098390:CDS
TAGAATATCCACCAGCTGAG+TGG 0.517553 1_3:+4314055 None:intergenic
TCACAGTCACCTAATGCTGC+TGG 0.518137 1_3:-4313487 Msa0098390:CDS
AGTTCGAAATCAGCGGTGGC+GGG 0.519442 1_3:+4319435 None:intergenic
ACCGGGGCAGGTATATTCTC+AGG 0.519963 1_3:-4313878 Msa0098390:CDS
GACTGTGATTGTCCGTATGC+AGG 0.520554 1_3:+4313502 None:intergenic
CCAGGATTCTGCTGTTGCTG+AGG 0.520990 1_3:+4313970 None:intergenic
TTGTAAGCAGTCCCATCAGC+TGG 0.522053 1_3:+4313934 None:intergenic
TTCAGTGGATGTGTCGCCTG+GGG 0.528218 1_3:+4317357 None:intergenic
AAGAAACCCTAGCTGTAGCT+GGG 0.528278 1_3:+4319627 None:intergenic
TGCAGATTCAATTTGTTCAG+AGG 0.529509 1_3:+4317312 None:intergenic
TCCTGAGAATATACCTGCCC+CGG 0.531982 1_3:+4313877 None:intergenic
CCTCCTCACTCACGAACCAC+CGG 0.532065 1_3:-4319504 Msa0098390:CDS
GTTGGACCAGGGTATGCTCC+AGG 0.533306 1_3:+4314123 None:intergenic
ATGGCTCAGCCCCAAGCTAT+GGG 0.534329 1_3:-4313780 Msa0098390:CDS
CCAGGTTGTTGAGAAGCGGC+AGG 0.535004 1_3:+4314162 None:intergenic
GAATACGAAGGTATACTCAT+AGG 0.536049 1_3:+4318641 None:intergenic
GGATATTCCCAACCAGAAGC+AGG 0.537520 1_3:-4313418 Msa0098390:CDS
AGTGGTACTCCGCCTGCATA+CGG 0.538474 1_3:-4313514 Msa0098390:CDS
CTCTATCCCCAGCTACAGCT+AGG 0.539526 1_3:-4319634 Msa0098390:five_prime_UTR
TTACCATCAGCAGAATATGC+TGG 0.541168 1_3:+4313262 None:intergenic
CTTAGAAATCCATCAATGTC+CGG 0.541667 1_3:-4314237 Msa0098390:CDS
GGCTGAGCAGCCCCTTGTGG+TGG 0.542062 1_3:+4313628 None:intergenic
GGCTGGGAAGGAGGATACCC+AGG 0.542313 1_3:+4313451 None:intergenic
GGTTATGGCTATGCACAGCC+TGG 0.542437 1_3:-4314141 Msa0098390:CDS
ATACCTTCGTATTCGCATCA+AGG 0.542939 1_3:-4318632 Msa0098390:CDS
TAACCAGGTTGACCGCCTGC+AGG 0.543015 1_3:+4313331 None:intergenic
GCTGGAGGTGCAGGACCACC+AGG 0.543305 1_3:+4313952 None:intergenic
GTGCCTCAGCAAGCTTATGC+AGG 0.543329 1_3:-4314087 Msa0098390:CDS
AAGCTATGGGTCAGCTCAAG+AGG 0.543556 1_3:-4313767 Msa0098390:CDS
GTTGGTCTTATAATCGGTAA+AGG 0.545344 1_3:-4317671 Msa0098390:CDS
TATGCTGCTTGGGAGGTTGG+CGG 0.549360 1_3:+4313592 None:intergenic
AGGTTGTTGAGAAGCGGCAG+GGG 0.550505 1_3:+4314164 None:intergenic
AATCTCAAAGTTGCAAAGCT+GGG 0.550828 1_3:+4313076 None:intergenic
CCTTGTTGTGAAGGTTGGAC+AGG 0.552316 1_3:+4313694 None:intergenic
TTGCTGAGGCACATTGTACT+GGG 0.553886 1_3:+4314098 None:intergenic
TACTCGACGAATGACTGGAC+AGG 0.554297 1_3:-4317841 Msa0098390:CDS
AGACTGCTGGGCAGTTGCAG+TGG 0.556554 1_3:+4314017 None:intergenic
CATGAAGATTCCAAATAACA+AGG 0.558461 1_3:-4317799 Msa0098390:intron
GTATATTCTCAGGATGGCTA+TGG 0.559901 1_3:-4313868 Msa0098390:CDS
CTACCATAACCTTGTTGTGA+AGG 0.561165 1_3:+4313685 None:intergenic
CTGAGGATAACCAGCACCAT+AGG 0.562921 1_3:+4313288 None:intergenic
TAGGATCAGCATCCATATCA+CGG 0.563712 1_3:+4318498 None:intergenic
GAAATCCCTAATGGAAGGGT+TGG 0.564633 1_3:-4318593 Msa0098390:CDS
CACTGACCTGATGAATCGTA+AGG 0.565644 1_3:+4319309 None:intergenic
AAACCGGTGGTTCGTGAGTG+AGG 0.566199 1_3:+4319501 None:intergenic
GGGACGTTGTTGTAAGAAGG+AGG 0.568413 1_3:+4319462 None:intergenic
CAGGTTGTTGAGAAGCGGCA+GGG 0.569198 1_3:+4314163 None:intergenic
TCAAAGTTGCAAAGCTGGGT+AGG 0.569258 1_3:+4313080 None:intergenic
GCCCCAGCATATTCTGCTGA+TGG 0.569348 1_3:-4313265 Msa0098390:CDS
TACAATCAACCACCATCCGC+TGG 0.570184 1_3:-4313910 Msa0098390:CDS
AGAAGGAGGAGGAGGTCCGT+CGG 0.571000 1_3:+4319476 None:intergenic
GTGGTTCGTGAGTGAGGAGG+TGG 0.571087 1_3:+4319507 None:intergenic
GTCCGTTTGACGACATCAGA+GGG 0.572785 1_3:+4319357 None:intergenic
GGCTGTGCATAGCCATAACC+AGG 0.572820 1_3:+4314144 None:intergenic
GAACAAATCTGATAGGAGGT+TGG 0.572931 1_3:-4312950 Msa0098390:three_prime_UTR
CCCCGGTTGGTTATAACCAG+CGG 0.574388 1_3:+4313894 None:intergenic
GTTGGCGGTACCCCATAACT+TGG 0.574628 1_3:+4313607 None:intergenic
CGAACCACCGGTTTCTCCGA+CGG 0.574726 1_3:-4319492 Msa0098390:CDS
TATCCTCCCCACTCAGCTGG+TGG 0.575900 1_3:-4314063 Msa0098390:CDS
TCCATCATAGCTACCACCAC+GGG 0.578817 1_3:+4313225 None:intergenic
GATTCCAATTCCAGTTCCAA+TGG 0.580610 1_3:-4319589 Msa0098390:exon
TGGTTATAACCAGCGGATGG+TGG 0.581931 1_3:+4313901 None:intergenic
GCAGAATATGCTGGGGCCTG+AGG 0.582180 1_3:+4313271 None:intergenic
TCCGCTGGTTATAACCAACC+GGG 0.583200 1_3:-4313895 Msa0098390:CDS
TACCTTCGTATTCGCATCAA+GGG 0.584599 1_3:-4318631 Msa0098390:CDS
TACTTGCGTTTCAGGGAAGG+TGG 0.584666 1_3:+4319540 None:intergenic
TTGAGCTGACCCATAGCTTG+GGG 0.586253 1_3:+4313771 None:intergenic
CCTGTCCAACCTTCACAACA+AGG 0.586296 1_3:-4313694 Msa0098390:CDS
AGGTTGGACAGGTGGAACTT+GGG 0.587507 1_3:+4313705 None:intergenic
GCTGCCATATGCTGCTTGGG+AGG 0.588178 1_3:+4313585 None:intergenic
AGGATCAGCATCCATATCAC+GGG 0.589305 1_3:+4318499 None:intergenic
AGATTGAAATCCCTAATGGA+AGG 0.590386 1_3:-4318598 Msa0098390:CDS
CTTGGCTGAGCAGCCCCTTG+TGG 0.595602 1_3:+4313625 None:intergenic
GGCTGAGCATACCCTGATTG+TGG 0.596057 1_3:+4313829 None:intergenic
TGGGAATATCCAGAAGGAGG+GGG 0.597039 1_3:+4313430 None:intergenic
GAAATAAACTAATTTAACAC+AGG 0.597862 1_3:+4313044 None:intergenic
TATGACGGAGGACCATATGA+TGG 0.597938 1_3:+4313361 None:intergenic
GAGAATATACCTGCCCCGGT+TGG 0.599934 1_3:+4313881 None:intergenic
TATGCAGGCGGAGTACCACT+TGG 0.600643 1_3:+4313517 None:intergenic
TCTATCCCCAGCTACAGCTA+GGG 0.602297 1_3:-4319633 Msa0098390:five_prime_UTR
CCTGCAGGAGCACCATATGA+CGG 0.602443 1_3:+4313346 None:intergenic
TTGTTGTAAGAAGGAGGAGG+AGG 0.606553 1_3:+4319468 None:intergenic
AACCAGACTGTGTTTGAGGT+TGG 0.607137 1_3:+4313563 None:intergenic
AATGGAACAAATCTGATAGG+AGG 0.607935 1_3:-4312954 Msa0098390:three_prime_UTR
CCTGATGAATCGTAAGGGGA+AGG 0.609958 1_3:+4319315 None:intergenic
GGTCCGTTTGACGACATCAG+AGG 0.610197 1_3:+4319356 None:intergenic
ATCAACAACCACCACAATCA+GGG 0.610790 1_3:-4313840 Msa0098390:CDS
ATAATCATAGGTAGACTGCT+GGG 0.611439 1_3:+4314005 None:intergenic
GATTGAAATCCCTAATGGAA+GGG 0.612326 1_3:-4318597 Msa0098390:CDS
TTTGATGAGTTCGAAATCAG+CGG 0.613457 1_3:+4319428 None:intergenic
CTGGAGGTTATGGTCAACCT+GGG 0.614290 1_3:-4313468 Msa0098390:CDS
CCTGCCGCTTCTCAACAACC+TGG 0.615048 1_3:-4314162 Msa0098390:CDS
GTTGGGAATATCCAGAAGGA+GGG 0.618770 1_3:+4313428 None:intergenic
AGGGAGCAGCGGCACCAGAG+AGG 0.621571 1_3:+4319376 None:intergenic
TCATATGGTGCTCCTGCAGG+CGG 0.623705 1_3:-4313343 Msa0098390:CDS
TATGATGGAGCACCTGCACA+GGG 0.625096 1_3:-4313211 Msa0098390:CDS
TGTTGTGAAGGTTGGACAGG+TGG 0.625828 1_3:+4313697 None:intergenic
TGCCAACTATCCACCACAAG+GGG 0.627557 1_3:-4313638 Msa0098390:CDS
GGCTGCTCAGCCAAGTTATG+GGG 0.628058 1_3:-4313617 Msa0098390:CDS
ACGTTGTTGTAAGAAGGAGG+AGG 0.630187 1_3:+4319465 None:intergenic
ACTGACCTGATGAATCGTAA+GGG 0.631319 1_3:+4319310 None:intergenic
ATAACCAGGTTGTTGAGAAG+CGG 0.633923 1_3:+4314158 None:intergenic
GCACAGCCTGGAGCATACCC+TGG 0.637236 1_3:-4314129 Msa0098390:CDS
TCTGCTGATGGTAATGCAAG+TGG 0.639056 1_3:-4313253 Msa0098390:CDS
CATCAATGAAGTTCTTGCTG+AGG 0.639266 1_3:-4318411 Msa0098390:intron
GGTTGTTGAGAAGCGGCAGG+GGG 0.640268 1_3:+4314165 None:intergenic
GATGAATCGTAAGGGGAAGG+AGG 0.641309 1_3:+4319318 None:intergenic
CACCAACTATGGATCAAAAG+GGG 0.641638 1_3:-4313734 Msa0098390:CDS
GGTCTTATAATCGGTAAAGG+TGG 0.641992 1_3:-4317668 Msa0098390:CDS
GACGACATCAGAGGGAGCAG+CGG 0.642009 1_3:+4319365 None:intergenic
GGTTGGGAATATCCAGAAGG+AGG 0.643058 1_3:+4313427 None:intergenic
TCCGGTGGTTACTCTCAGCA+AGG 0.644168 1_3:-4314219 Msa0098390:CDS
CTGACCTGATGAATCGTAAG+GGG 0.646597 1_3:+4319311 None:intergenic
GGTTATGGTCAGGCACCACA+TGG 0.648967 1_3:-4313313 Msa0098390:CDS
AGCTATGGGTCAGCTCAAGA+GGG 0.656317 1_3:-4313766 Msa0098390:CDS
AGGTCCGTCGGAGAAACCGG+TGG 0.656677 1_3:+4319488 None:intergenic
TATCCACCAGCTGAGTGGGG+AGG 0.656693 1_3:+4314060 None:intergenic
AGAAACCCTAGCTGTAGCTG+GGG 0.657419 1_3:+4319628 None:intergenic
GATGAGTTCGAAATCAGCGG+TGG 0.658474 1_3:+4319431 None:intergenic
GGCACCAGAGAGGAGACGAG+CGG 0.659053 1_3:+4319386 None:intergenic
GGTTGGTTATAACCAGCGGA+TGG 0.660203 1_3:+4313898 None:intergenic
TGATTCAATCCTCAGTGGCG+AGG 0.661659 1_3:-4317278 Msa0098390:intron
TCAGTGGATGTGTCGCCTGG+GGG 0.664235 1_3:+4317358 None:intergenic
TAACCTGCATAAGCTTGCTG+AGG 0.668745 1_3:+4314084 None:intergenic
TGAGCATACCCTGATTGTGG+TGG 0.669029 1_3:+4313832 None:intergenic
GATGGAGGACCATAACCAGA+AGG 0.670007 1_3:+4313379 None:intergenic
TAAGCAGTCCCATCAGCTGG+AGG 0.671420 1_3:+4313937 None:intergenic
ACCTTGCTGAGAGTAACCAC+CGG 0.672988 1_3:+4314218 None:intergenic
GGGCAGGTATATTCTCAGGA+TGG 0.673213 1_3:-4313874 Msa0098390:CDS
CTGCCAACTATCCACCACAA+GGG 0.674671 1_3:-4313639 Msa0098390:CDS
CTCCATCATAGCTACCACCA+CGG 0.675902 1_3:+4313224 None:intergenic
GACCCTTGATGCGAATACGA+AGG 0.677168 1_3:+4318629 None:intergenic
GACGGAGGACCATATGATGG+AGG 0.678171 1_3:+4313364 None:intergenic
AAATAAACTAATTTAACACA+GGG 0.678781 1_3:+4313045 None:intergenic
GAATATCCACCAGCTGAGTG+GGG 0.679261 1_3:+4314057 None:intergenic
TCTGGTTGGGAATATCCAGA+AGG 0.680022 1_3:+4313424 None:intergenic
CTGCTGATGGTAATGCAAGT+GGG 0.680991 1_3:-4313252 Msa0098390:CDS
ACTCGACGAATGACTGGACA+GGG 0.681409 1_3:-4317840 Msa0098390:CDS
AGAAATCCATCAATGTCCGG+TGG 0.682404 1_3:-4314234 Msa0098390:CDS
TTGGGAATATCCAGAAGGAG+GGG 0.684340 1_3:+4313429 None:intergenic
TGTGATTGTCCGTATGCAGG+CGG 0.684703 1_3:+4313505 None:intergenic
CAGTCACCTAATGCTGCTGG+AGG 0.687355 1_3:-4313484 Msa0098390:CDS
GGAGGACCATAACCAGAAGG+TGG 0.687831 1_3:+4313382 None:intergenic
TGTGGTGCCTGACCATAACC+AGG 0.688833 1_3:+4313316 None:intergenic
GCTGCCAACTATCCACCACA+AGG 0.689795 1_3:-4313640 Msa0098390:CDS
TTGGTTGATTCAATCCTCAG+TGG 0.689871 1_3:-4317283 Msa0098390:CDS
CCTCAAACTCAAAAGCCAAG+TGG 0.690391 1_3:-4313532 Msa0098390:CDS
ACCATCAGCAGAATATGCTG+GGG 0.694973 1_3:+4313264 None:intergenic
CCGCTGGTTATAACCAACCG+GGG 0.703478 1_3:-4313894 Msa0098390:CDS
CAGCAACAGCAGAATCCTGG+TGG 0.703625 1_3:-4313967 Msa0098390:CDS
ATATTAGTACATCAGCTCTG+AGG 0.707129 1_3:+4313160 None:intergenic
CCGGTGGTTCGTGAGTGAGG+AGG 0.707715 1_3:+4319504 None:intergenic
AAACGGACCAAATTCGACAA+CGG 0.710424 1_3:-4319342 Msa0098390:CDS
AATGCAAGTGGGAATGCCCG+TGG 0.712985 1_3:-4313241 Msa0098390:CDS
TGTACTGGGAAGTTGGACCA+GGG 0.721480 1_3:+4314112 None:intergenic
CGACGAATGACTGGACAGGG+TGG 0.727236 1_3:-4317837 Msa0098390:CDS
GCAGGAGCACCATATGACGG+AGG 0.739248 1_3:+4313349 None:intergenic
CAAAACATACCTCGCCACTG+AGG 0.741645 1_3:+4317269 None:intergenic
GCAAGTGGGAATGCCCGTGG+TGG 0.753231 1_3:-4313238 Msa0098390:CDS
CCAGCACCATAGGAACCATG+TGG 0.763459 1_3:+4313298 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGTTAATCTTATTATT+TGG - chr1_3:4313882-4313901 Msa0098390:CDS 10.0%
!! TATAAATAACACAATATTAA+GGG + chr1_3:4318222-4318241 None:intergenic 10.0%
!! ATATAAATAACACAATATTA+AGG + chr1_3:4318223-4318242 None:intergenic 10.0%
!!! TCCTAATTTTACTTAATTTT+AGG - chr1_3:4313352-4313371 Msa0098390:CDS 15.0%
!! ACCTAAAATTAAGTAAAATT+AGG + chr1_3:4313356-4313375 None:intergenic 15.0%
!!! AATTTCGATTATTTGATAAT+TGG - chr1_3:4313914-4313933 Msa0098390:CDS 15.0%
!!! TAGAAAATTTAAAATCTCTT+AGG - chr1_3:4314288-4314307 Msa0098390:intron 15.0%
!!! AGAAAATTTAAAATCTCTTA+GGG - chr1_3:4314289-4314308 Msa0098390:intron 15.0%
!! TTGTATGTGAATATTTAATT+TGG - chr1_3:4314473-4314492 Msa0098390:intron 15.0%
!! AAAGAACATTAAAAATTGAA+GGG - chr1_3:4315273-4315292 Msa0098390:intron 15.0%
!! TAATCATTATTTATGTTAGA+TGG - chr1_3:4315488-4315507 Msa0098390:intron 15.0%
!! ATTTATGTAAATGTGATTTA+GGG - chr1_3:4316004-4316023 Msa0098390:intron 15.0%
!!! GTATCATAGTTATATTATTT+TGG - chr1_3:4316118-4316137 Msa0098390:intron 15.0%
!!! AAGATAATTTTGATAAACTT+AGG + chr1_3:4316150-4316169 None:intergenic 15.0%
!! TTATTATTGAAACAATTGTA+CGG - chr1_3:4316518-4316537 Msa0098390:intron 15.0%
!! CTTAATAATAATATATGGAA+GGG + chr1_3:4316824-4316843 None:intergenic 15.0%
!! ACTTAATAATAATATATGGA+AGG + chr1_3:4316825-4316844 None:intergenic 15.0%
!! AGGAACTTAATAATAATATA+TGG + chr1_3:4316829-4316848 None:intergenic 15.0%
!! AAATAAACTAATTTAACACA+GGG + chr1_3:4319567-4319586 None:intergenic 15.0%
!! TAATTGAATTGTGATAAAAG+AGG + chr1_3:4313331-4313350 None:intergenic 20.0%
!!! TGATTTTAATAGAGTCTATT+TGG - chr1_3:4313383-4313402 Msa0098390:CDS 20.0%
!!! ATTTTGGAGTGATTTATATT+TGG + chr1_3:4313593-4313612 None:intergenic 20.0%
!! AAGAGTCTATAGATAAAATA+GGG + chr1_3:4314226-4314245 None:intergenic 20.0%
!! AAAGAGTCTATAGATAAAAT+AGG + chr1_3:4314227-4314246 None:intergenic 20.0%
!!! AGTATGGATTTGAAATATAT+AGG - chr1_3:4314586-4314605 Msa0098390:intron 20.0%
!!! TTTAATGAATCAGTTTCTTT+TGG - chr1_3:4314696-4314715 Msa0098390:intron 20.0%
!!! TTAATGAATCAGTTTCTTTT+GGG - chr1_3:4314697-4314716 Msa0098390:intron 20.0%
!!! ACTCAATTTTTCTTCTTTTT+TGG - chr1_3:4314888-4314907 Msa0098390:intron 20.0%
!!! AATTTTTCTTCTTTTTTGGT+TGG - chr1_3:4314892-4314911 Msa0098390:intron 20.0%
!! GTGGTTATTATTAATGTTAT+TGG - chr1_3:4315086-4315105 Msa0098390:intron 20.0%
!! TGTGAACAACAATAATATAA+GGG + chr1_3:4315188-4315207 None:intergenic 20.0%
!! TTGTGAACAACAATAATATA+AGG + chr1_3:4315189-4315208 None:intergenic 20.0%
!!! AATTTTTAATGTTCTTTCAG+TGG + chr1_3:4315270-4315289 None:intergenic 20.0%
!! GAAAGAACATTAAAAATTGA+AGG - chr1_3:4315272-4315291 Msa0098390:intron 20.0%
!!! TTAGTTCTTACTAATTGATT+TGG - chr1_3:4315811-4315830 Msa0098390:intron 20.0%
!!! TAGTTCTTACTAATTGATTT+GGG - chr1_3:4315812-4315831 Msa0098390:intron 20.0%
!! GAAAACAAGTTTGTAATAAA+AGG + chr1_3:4315844-4315863 None:intergenic 20.0%
!! ATCACATTTACATAAATCAA+AGG + chr1_3:4316001-4316020 None:intergenic 20.0%
!! GATTTATGTAAATGTGATTT+AGG - chr1_3:4316003-4316022 Msa0098390:intron 20.0%
!! ATGTATTCATAGAATTGATT+CGG - chr1_3:4316253-4316272 Msa0098390:intron 20.0%
!! ATGTATTCATAGAATTGATT+CGG - chr1_3:4316253-4316272 Msa0098390:intron 20.0%
!! TTCATTGTTGGAAATATTTA+TGG - chr1_3:4317261-4317280 Msa0098390:intron 20.0%
!! ATTTCTGCTGTTAAATTATT+AGG - chr1_3:4317417-4317436 Msa0098390:intron 20.0%
!!! ATTAACTCTAATATTTGTTG+CGG - chr1_3:4317555-4317574 Msa0098390:intron 20.0%
!!! TTTATACGTACTTTTATTTG+AGG - chr1_3:4317657-4317676 Msa0098390:CDS 20.0%
!!! TTATACGTACTTTTATTTGA+GGG - chr1_3:4317658-4317677 Msa0098390:CDS 20.0%
!!! TCTTGACAATTTGTATATTT+TGG - chr1_3:4317852-4317871 Msa0098390:CDS 20.0%
!! ACAATTCTATTGCAAAATAT+GGG + chr1_3:4317971-4317990 None:intergenic 20.0%
!! TACAATTCTATTGCAAAATA+TGG + chr1_3:4317972-4317991 None:intergenic 20.0%
!! ATATTGTATCTCAAAATACT+GGG + chr1_3:4318003-4318022 None:intergenic 20.0%
!! TATATTGTATCTCAAAATAC+TGG + chr1_3:4318004-4318023 None:intergenic 20.0%
!! AGTTCATTTGTATTTATTTG+TGG - chr1_3:4318323-4318342 Msa0098390:intron 20.0%
!!! CTGTTGATTATAATAATCAT+AGG + chr1_3:4318619-4318638 None:intergenic 20.0%
!!! TATGTTAATTTTGTTCTGAA+TGG - chr1_3:4319469-4319488 Msa0098390:CDS 20.0%
!! GAAATAAACTAATTTAACAC+AGG + chr1_3:4319568-4319587 None:intergenic 20.0%
!!! ATGTAAACTTGCTAAATATT+TGG - chr1_3:4319615-4319634 Msa0098390:five_prime_UTR 20.0%
!! TATACCTCTACAATCAATTT+TGG + chr1_3:4313609-4313628 None:intergenic 25.0%
!! ATAATTGACTTTGACATGTT+TGG - chr1_3:4313628-4313647 Msa0098390:CDS 25.0%
!! TGATTCTAGAAAGTAGAAAT+TGG - chr1_3:4313693-4313712 Msa0098390:CDS 25.0%
! GTATAGACTAAGTATATGTT+CGG + chr1_3:4313854-4313873 None:intergenic 25.0%
! ACTAATCTATTTGGAGAATT+AGG + chr1_3:4314133-4314152 None:intergenic 25.0%
! AAGACTCATTTGAATTAGTA+TGG - chr1_3:4314570-4314589 Msa0098390:intron 25.0%
!!! ATTTGTGTTGTGTTTTTAAC+AGG - chr1_3:4314720-4314739 Msa0098390:intron 25.0%
! ATAAATCATCATCATTGTTG+TGG - chr1_3:4315067-4315086 Msa0098390:intron 25.0%
! AATTGAATCTGCAAAACAAT+TGG - chr1_3:4315307-4315326 Msa0098390:intron 25.0%
! CTTAAAACTCAATTCTTTCT+TGG - chr1_3:4315626-4315645 Msa0098390:intron 25.0%
! AACAAGCTTAATTATTGTGT+GGG + chr1_3:4315654-4315673 None:intergenic 25.0%
!! TAAGATCACGATTTTTACTT+TGG - chr1_3:4315727-4315746 Msa0098390:intron 25.0%
!!! AGTTCTTACTAATTGATTTG+GGG - chr1_3:4315813-4315832 Msa0098390:intron 25.0%
! TATCTTACCATCTAAACATT+TGG + chr1_3:4315885-4315904 None:intergenic 25.0%
!! TGTATTCATAGAATTGATTC+GGG - chr1_3:4316254-4316273 Msa0098390:intron 25.0%
!! TGTATTCATAGAATTGATTC+GGG - chr1_3:4316254-4316273 Msa0098390:intron 25.0%
! TATAATTCCTATGAGTATCT+AGG + chr1_3:4316461-4316480 None:intergenic 25.0%
!!! ATTGTACGGTTAGTTTATAT+TGG - chr1_3:4316532-4316551 Msa0098390:intron 25.0%
! TTTATGTCTATGTCTATAGA+TGG - chr1_3:4316698-4316717 Msa0098390:intron 25.0%
! TATTATGCCAAATACAAGTT+GGG + chr1_3:4316767-4316786 None:intergenic 25.0%
! TTAAAATTATGCAGTATACG+AGG + chr1_3:4316797-4316816 None:intergenic 25.0%
! AAACAATCATGGTTGAAAAA+AGG + chr1_3:4316849-4316868 None:intergenic 25.0%
!! ATTGTTAGCTTAAACAATCA+TGG + chr1_3:4316860-4316879 None:intergenic 25.0%
!!! TGTACTGATTAATTCATTGT+TGG - chr1_3:4317249-4317268 Msa0098390:intron 25.0%
! TAGTTTAACAACTACAAAAC+AGG + chr1_3:4317383-4317402 None:intergenic 25.0%
!! TTAGTTGTTAAGCATTTTAG+TGG - chr1_3:4317462-4317481 Msa0098390:intron 25.0%
! ATGATAAAAATTACGAGAAG+AGG + chr1_3:4317537-4317556 None:intergenic 25.0%
!! AGTTTGTTCTCTTAGATTAT+TGG - chr1_3:4317768-4317787 Msa0098390:intron 25.0%
! GTTTGTTCTCTTAGATTATT+GGG - chr1_3:4317769-4317788 Msa0098390:intron 25.0%
! TTAGATTATTGGGTGATATT+TGG - chr1_3:4317779-4317798 Msa0098390:intron 25.0%
! TAGATTATTGGGTGATATTT+GGG - chr1_3:4317780-4317799 Msa0098390:intron 25.0%
! TTTCTATTTACTTGTAGCAA+AGG - chr1_3:4317813-4317832 Msa0098390:CDS 25.0%
!!! ATTTGTATATTTTGGAGTCA+TGG - chr1_3:4317860-4317879 Msa0098390:CDS 25.0%
! AACTAAACAAGCTAAATGTA+GGG + chr1_3:4317917-4317936 None:intergenic 25.0%
! TAACTAAACAAGCTAAATGT+AGG + chr1_3:4317918-4317937 None:intergenic 25.0%
! CAATTCTATTGCAAAATATG+GGG + chr1_3:4317970-4317989 None:intergenic 25.0%
! TACATTATCAGATACCATAT+GGG + chr1_3:4318194-4318213 None:intergenic 25.0%
! TTACATTATCAGATACCATA+TGG + chr1_3:4318195-4318214 None:intergenic 25.0%
! TGTATGTAATACTACATCTT+GGG - chr1_3:4318298-4318317 Msa0098390:intron 25.0%
! GCGTACTTAAATATGAAAAA+TGG - chr1_3:4319637-4319656 Msa0098390:five_prime_UTR 25.0%
! AAAAATGGAACAAATCTGAT+AGG - chr1_3:4319652-4319671 Msa0098390:five_prime_UTR 25.0%
GCAACTAAAATTGAGTATAG+AGG - chr1_3:4313439-4313458 Msa0098390:CDS 30.0%
! AGAATTGATTCTGACATGTT+TGG - chr1_3:4313465-4313484 Msa0098390:CDS 30.0%
AAGAAGATTGAAATCCCTAA+TGG - chr1_3:4314007-4314026 Msa0098390:CDS 30.0%
!! GTTGGTGTTATTATTGGAAA+AGG - chr1_3:4314034-4314053 Msa0098390:CDS 30.0%
GTAAGCTCAACTAATCTATT+TGG + chr1_3:4314142-4314161 None:intergenic 30.0%
! AATAGATTAGTTGAGCTTAC+TGG - chr1_3:4314142-4314161 Msa0098390:CDS 30.0%
! TTGGCGTAAAAGTTTTTGAT+AGG - chr1_3:4314492-4314511 Msa0098390:intron 30.0%
!! CTTGTTATTTGGAATCTTCA+TGG + chr1_3:4314812-4314831 None:intergenic 30.0%
CATGAAGATTCCAAATAACA+AGG - chr1_3:4314810-4314829 Msa0098390:intron 30.0%
AAGATTCCAAATAACAAGGT+GGG - chr1_3:4314814-4314833 Msa0098390:intron 30.0%
!!! TTCTTCTTTTTTGGTTGGAA+TGG - chr1_3:4314897-4314916 Msa0098390:intron 30.0%
AACAAAACAAAATGAAGGCA+TGG + chr1_3:4315028-4315047 None:intergenic 30.0%
AGCACAACAAAACAAAATGA+AGG + chr1_3:4315033-4315052 None:intergenic 30.0%
TTGTACTTGTATGTTCTTTC+AGG - chr1_3:4315211-4315230 Msa0098390:intron 30.0%
AAATCCAACAGTAAAGCATA+GGG + chr1_3:4315368-4315387 None:intergenic 30.0%
AGATACAGACAATAACTACA+AGG + chr1_3:4315465-4315484 None:intergenic 30.0%
GAACAAGCTTAATTATTGTG+TGG + chr1_3:4315655-4315674 None:intergenic 30.0%
! CACAATAATTAAGCTTGTTC+AGG - chr1_3:4315655-4315674 Msa0098390:intron 30.0%
CTATTATGCCAAATACAAGT+TGG + chr1_3:4316768-4316787 None:intergenic 30.0%
!! TTGTGTTGATTAGTTCATTG+TGG - chr1_3:4316919-4316938 Msa0098390:intron 30.0%
!! TGTGTTGATTAGTTCATTGT+GGG - chr1_3:4316920-4316939 Msa0098390:intron 30.0%
! AGTTTGTTCTCCTAGATTAT+TGG - chr1_3:4317690-4317709 Msa0098390:intron 30.0%
GTTTGTTCTCCTAGATTATT+GGG - chr1_3:4317691-4317710 Msa0098390:intron 30.0%
TAGATTATTGGGTGAAGTTT+GGG - chr1_3:4317702-4317721 Msa0098390:intron 30.0%
AGATTATTGGGTGATATTTG+GGG - chr1_3:4317781-4317800 Msa0098390:intron 30.0%
CAATATAGTGTATTTCCTTG+AGG - chr1_3:4318017-4318036 Msa0098390:intron 30.0%
ATATGATATTCATTGCCTCA+AGG + chr1_3:4318035-4318054 None:intergenic 30.0%
ATACCATATGGGATTAGAAA+GGG + chr1_3:4318183-4318202 None:intergenic 30.0%
CTGTATGTAATACTACATCT+TGG - chr1_3:4318297-4318316 Msa0098390:intron 30.0%
ATTGGAACTGGAATTGGAAT+CGG + chr1_3:4313021-4313040 None:intergenic 35.0%
TTTGATGAGTTCGAAATCAG+CGG + chr1_3:4313184-4313203 None:intergenic 35.0%
CACTCCAAAATTGATTGTAG+AGG - chr1_3:4313602-4313621 Msa0098390:CDS 35.0%
! GAATACGAAGGTATACTCAT+AGG + chr1_3:4313971-4313990 None:intergenic 35.0%
AGATTGAAATCCCTAATGGA+AGG - chr1_3:4314011-4314030 Msa0098390:CDS 35.0%
GATTGAAATCCCTAATGGAA+GGG - chr1_3:4314012-4314031 Msa0098390:CDS 35.0%
!! GGTGTTATTATTGGAAAAGG+TGG - chr1_3:4314037-4314056 Msa0098390:CDS 35.0%
AAGTATCTTCAGTTGCAATC+TGG - chr1_3:4314070-4314089 Msa0098390:CDS 35.0%
GTGTAGATGTGATCATTGTA+TGG - chr1_3:4314660-4314679 Msa0098390:intron 35.0%
GAAGATTCCAAATAACAAGG+TGG - chr1_3:4314813-4314832 Msa0098390:intron 35.0%
! GTGTTTTGTACATTACTCCT+AGG + chr1_3:4314840-4314859 None:intergenic 35.0%
!! CTACAGGTTGGTCTTATAAT+CGG - chr1_3:4314932-4314951 Msa0098390:intron 35.0%
!! GTTGGTCTTATAATCGGTAA+AGG - chr1_3:4314938-4314957 Msa0098390:intron 35.0%
! TGCAGATTCAATTTGTTCAG+AGG + chr1_3:4315300-4315319 None:intergenic 35.0%
CAAATCCAACAGTAAAGCAT+AGG + chr1_3:4315369-4315388 None:intergenic 35.0%
CTATGCTTTACTGTTGGATT+TGG - chr1_3:4315367-4315386 Msa0098390:intron 35.0%
AGCAAAACAAGCTATAACCA+AGG + chr1_3:4315393-4315412 None:intergenic 35.0%
TGCTATTCTCTTATGATTGC+TGG - chr1_3:4315583-4315602 Msa0098390:intron 35.0%
ATTCTCTTATGATTGCTGGA+TGG - chr1_3:4315587-4315606 Msa0098390:intron 35.0%
TTCTCTTATGATTGCTGGAT+GGG - chr1_3:4315588-4315607 Msa0098390:intron 35.0%
TGCTATTGTTCATGCATTGA+AGG - chr1_3:4315699-4315718 Msa0098390:intron 35.0%
AGCTTAGCCAAATGTTTAGA+TGG - chr1_3:4315875-4315894 Msa0098390:intron 35.0%
GATAAGTAGCCATTTCTTCA+TGG - chr1_3:4315901-4315920 Msa0098390:intron 35.0%
!! ATTCATAGAATTGATTCGGG+AGG - chr1_3:4316257-4316276 Msa0098390:intron 35.0%
! ATGTTGCGCTTTAGATTCAT+AGG - chr1_3:4316409-4316428 Msa0098390:intron 35.0%
! TGTTGCGCTTTAGATTCATA+GGG - chr1_3:4316410-4316429 Msa0098390:intron 35.0%
TTTAGATTCATAGGGATGTC+TGG - chr1_3:4316418-4316437 Msa0098390:intron 35.0%
TTAGATTCATAGGGATGTCT+GGG - chr1_3:4316419-4316438 Msa0098390:intron 35.0%
AATTATAGCCTGTTCAACAG+TGG - chr1_3:4316474-4316493 Msa0098390:intron 35.0%
TAATAAGACCACTGTTGAAC+AGG + chr1_3:4316485-4316504 None:intergenic 35.0%
! TTCCATGTTAGTGTCACTAA+TGG + chr1_3:4316559-4316578 None:intergenic 35.0%
GTGTAAGAAACACCAACAAA+GGG + chr1_3:4316583-4316602 None:intergenic 35.0%
TGTGTAAGAAACACCAACAA+AGG + chr1_3:4316584-4316603 None:intergenic 35.0%
! CTGAGCATCAAGTCTTATAT+TGG - chr1_3:4316642-4316661 Msa0098390:intron 35.0%
! GCATCAAGTCTTATATTGGT+CGG - chr1_3:4316646-4316665 Msa0098390:intron 35.0%
CTGAAAAATGGCAGTCAAAA+CGG + chr1_3:4316736-4316755 None:intergenic 35.0%
TCTGATACCCAACTTGTATT+TGG - chr1_3:4316757-4316776 Msa0098390:intron 35.0%
TTATGCAGTATACGAGGTTA+AGG + chr1_3:4316791-4316810 None:intergenic 35.0%
TCATATGCTGGAGTTATGTT+TGG - chr1_3:4316983-4317002 Msa0098390:intron 35.0%
! CTGAATCTCTTATTTCAACC+TGG - chr1_3:4317165-4317184 Msa0098390:intron 35.0%
GTTAGTCATGAAGTAAATCC+AGG + chr1_3:4317186-4317205 None:intergenic 35.0%
! TTTTATGCTGGAGCTATGTT+TGG - chr1_3:4317312-4317331 Msa0098390:CDS 35.0%
GTTTCGGAATAAAAAGCTTC+AGG + chr1_3:4317346-4317365 None:intergenic 35.0%
GGATGTTGGAATAAGAGTTT+CGG + chr1_3:4317362-4317381 None:intergenic 35.0%
ACAACTACAAAACAGGATGT+TGG + chr1_3:4317376-4317395 None:intergenic 35.0%
! AACAAAGCACCATAACAAGA+AGG + chr1_3:4317501-4317520 None:intergenic 35.0%
AATCAAGGGATAAAGACAAG+TGG + chr1_3:4317613-4317632 None:intergenic 35.0%
GCAATATGAGAGGAAATCAA+GGG + chr1_3:4317627-4317646 None:intergenic 35.0%
AGCAATATGAGAGGAAATCA+AGG + chr1_3:4317628-4317647 None:intergenic 35.0%
ATTTCCTCTCATATTGCTGT+TGG - chr1_3:4317630-4317649 Msa0098390:CDS 35.0%
TAAACCAACAGCAATATGAG+AGG + chr1_3:4317637-4317656 None:intergenic 35.0%
!! GTACTTTTATTTGAGGGTTC+CGG - chr1_3:4317664-4317683 Msa0098390:CDS 35.0%
CAAACTTCACCCAATAATCT+AGG + chr1_3:4317703-4317722 None:intergenic 35.0%
CTAGATTATTGGGTGAAGTT+TGG - chr1_3:4317701-4317720 Msa0098390:intron 35.0%
AGATTATTGGGTGAAGTTTG+GGG - chr1_3:4317703-4317722 Msa0098390:intron 35.0%
ATGTACGTACTTCTATCTGA+TGG - chr1_3:4317736-4317755 Msa0098390:intron 35.0%
TCTAAGAGAACAAACTTGAC+TGG + chr1_3:4317764-4317783 None:intergenic 35.0%
TTGCAAAATATGGGGTGATA+TGG + chr1_3:4317962-4317981 None:intergenic 35.0%
TCGAAATGAATGGGTACAAA+AGG + chr1_3:4318086-4318105 None:intergenic 35.0%
TGTACCCATTCATTTCGAAT+AGG - chr1_3:4318088-4318107 Msa0098390:intron 35.0%
GTACCCATTCATTTCGAATA+GGG - chr1_3:4318089-4318108 Msa0098390:intron 35.0%
TCTCCCTATTCGAAATGAAT+GGG + chr1_3:4318095-4318114 None:intergenic 35.0%
ATTCATTTCGAATAGGGAGA+GGG - chr1_3:4318095-4318114 Msa0098390:intron 35.0%
TACCATATGGGATTAGAAAG+GGG + chr1_3:4318182-4318201 None:intergenic 35.0%
GATACCATATGGGATTAGAA+AGG + chr1_3:4318184-4318203 None:intergenic 35.0%
CTTAGAAATCCATCAATGTC+CGG - chr1_3:4318372-4318391 Msa0098390:intron 35.0%
! TGGTGGATATTCTACCAATT+GGG - chr1_3:4318563-4318582 Msa0098390:CDS 35.0%
ATAATCATAGGTAGACTGCT+GGG + chr1_3:4318607-4318626 None:intergenic 35.0%
AATAATCATAGGTAGACTGC+TGG + chr1_3:4318608-4318627 None:intergenic 35.0%
TATGATCAGCAGCAAATCTA+TGG - chr1_3:4318810-4318829 Msa0098390:intron 35.0%
ATATTAGTACATCAGCTCTG+AGG + chr1_3:4319452-4319471 None:intergenic 35.0%
AATCTCAAAGTTGCAAAGCT+GGG + chr1_3:4319536-4319555 None:intergenic 35.0%
AATGGAACAAATCTGATAGG+AGG - chr1_3:4319655-4319674 Msa0098390:five_prime_UTR 35.0%
GATTCCAATTCCAGTTCCAA+TGG - chr1_3:4313020-4313039 Msa0098390:three_prime_UTR 40.0%
AAACGGACCAAATTCGACAA+CGG - chr1_3:4313267-4313286 Msa0098390:CDS 40.0%
ACTGACCTGATGAATCGTAA+GGG + chr1_3:4313302-4313321 None:intergenic 40.0%
ATACCTTCGTATTCGCATCA+AGG - chr1_3:4313977-4313996 Msa0098390:CDS 40.0%
TACCTTCGTATTCGCATCAA+GGG - chr1_3:4313978-4313997 Msa0098390:CDS 40.0%
TAACACCAACCCTTCCATTA+GGG + chr1_3:4314024-4314043 None:intergenic 40.0%
ATAACACCAACCCTTCCATT+AGG + chr1_3:4314025-4314044 None:intergenic 40.0%
!! GGAAGGGTTGGTGTTATTAT+TGG - chr1_3:4314028-4314047 Msa0098390:CDS 40.0%
AATCCAAGTTACCCGTGATA+TGG - chr1_3:4314099-4314118 Msa0098390:CDS 40.0%
TAGGATCAGCATCCATATCA+CGG + chr1_3:4314114-4314133 None:intergenic 40.0%
CATCAATGAAGTTCTTGCTG+AGG - chr1_3:4314198-4314217 Msa0098390:CDS 40.0%
!!! TGTCATTGTGAGCTGGTTTT+TGG - chr1_3:4314312-4314331 Msa0098390:intron 40.0%
!!! ATTGTGAGCTGGTTTTTGGA+GGG - chr1_3:4314316-4314335 Msa0098390:intron 40.0%
!! TGTTTTTAACAGGCTGAGTC+TGG - chr1_3:4314730-4314749 Msa0098390:intron 40.0%
! TGTTGTGCGTTGAGTTCTTT+TGG - chr1_3:4314865-4314884 Msa0098390:intron 40.0%
! ATGGTTTTTCCTGTGTCTAC+AGG - chr1_3:4314916-4314935 Msa0098390:intron 40.0%
! TTTTTCCTGTGTCTACAGGT+TGG - chr1_3:4314920-4314939 Msa0098390:intron 40.0%
! GGTCTTATAATCGGTAAAGG+TGG - chr1_3:4314941-4314960 Msa0098390:intron 40.0%
! AAGAGTATGCAAGCTACAAC+TGG - chr1_3:4314974-4314993 Msa0098390:intron 40.0%
TACAACTGGAGCAAGAATTC+AGG - chr1_3:4314988-4315007 Msa0098390:intron 40.0%
! AATGAAGGCATGGCTTAAGA+AGG + chr1_3:4315018-4315037 None:intergenic 40.0%
! TTGGTTGATTCAATCCTCAG+TGG - chr1_3:4315326-4315345 Msa0098390:intron 40.0%
TGTACCCTATGCTTTACTGT+TGG - chr1_3:4315361-4315380 Msa0098390:intron 40.0%
TTTACTGTTGGATTTGGCCT+TGG - chr1_3:4315373-4315392 Msa0098390:intron 40.0%
CTTCGAAGCAAAACTAGACT+TGG + chr1_3:4315425-4315444 None:intergenic 40.0%
TCTTGACCTATGCAATCTGT+CGG - chr1_3:4315778-4315797 Msa0098390:intron 40.0%
TAGCCATTTCTTCATGGCTA+AGG - chr1_3:4315907-4315926 Msa0098390:intron 40.0%
AAAAAGCCTGCGCAAAAGAT+TGG + chr1_3:4316359-4316378 None:intergenic 40.0%
GTCACAACCTAGATACTCAT+AGG - chr1_3:4316451-4316470 Msa0098390:intron 40.0%
GACCATTAGTGACACTAACA+TGG - chr1_3:4316554-4316573 Msa0098390:intron 40.0%
CTAACATGGAATCCCTTTGT+TGG - chr1_3:4316568-4316587 Msa0098390:intron 40.0%
TGGTGTTTCTTACACATGCA+AGG - chr1_3:4316588-4316607 Msa0098390:intron 40.0%
GGTGTTTCTTACACATGCAA+GGG - chr1_3:4316589-4316608 Msa0098390:intron 40.0%
TTCTTACACATGCAAGGGTA+TGG - chr1_3:4316594-4316613 Msa0098390:intron 40.0%
!!! CGTTTTGACTGCCATTTTTC+AGG - chr1_3:4316734-4316753 Msa0098390:intron 40.0%
TGGGTATCAGACCTGAAAAA+TGG + chr1_3:4316748-4316767 None:intergenic 40.0%
TAACTCCAGCATATGACACA+AGG + chr1_3:4316979-4316998 None:intergenic 40.0%
! AATGACAATGTGTTTGCTGC+AGG + chr1_3:4317017-4317036 None:intergenic 40.0%
TAACTCCAGCATACAACAAG+AGG + chr1_3:4317114-4317133 None:intergenic 40.0%
GATTCAGAATGAAAAGCTGC+TGG + chr1_3:4317152-4317171 None:intergenic 40.0%
TCACTCCTACCTTCTTGTTA+TGG - chr1_3:4317489-4317508 Msa0098390:intron 40.0%
AAGCACCATAACAAGAAGGT+AGG + chr1_3:4317497-4317516 None:intergenic 40.0%
TCTAGGAGAACAAACTTGAC+CGG + chr1_3:4317686-4317705 None:intergenic 40.0%
GATTATTGGGTGAAGTTTGG+GGG - chr1_3:4317704-4317723 Msa0098390:intron 40.0%
TATTGGGTGATATTTGGGGA+AGG - chr1_3:4317785-4317804 Msa0098390:intron 40.0%
CATATAGACTGCATAAGCAG+CGG + chr1_3:4317889-4317908 None:intergenic 40.0%
CATATGCTTGTCTACTTCTG+TGG - chr1_3:4318050-4318069 Msa0098390:intron 40.0%
CTCTCCCTATTCGAAATGAA+TGG + chr1_3:4318096-4318115 None:intergenic 40.0%
CATTCATTTCGAATAGGGAG+AGG - chr1_3:4318094-4318113 Msa0098390:intron 40.0%
!! AACTCAGTTTTGTCTCGATC+TGG - chr1_3:4318135-4318154 Msa0098390:intron 40.0%
!! AGTTTTGTCTCGATCTGGTA+CGG - chr1_3:4318140-4318159 Msa0098390:intron 40.0%
! GGGATTAGAAAGGGGTATAA+AGG + chr1_3:4318174-4318193 None:intergenic 40.0%
TACCCCTTTCTAATCCCATA+TGG - chr1_3:4318177-4318196 Msa0098390:intron 40.0%
ATAACCAGGTTGTTGAGAAG+CGG + chr1_3:4318454-4318473 None:intergenic 40.0%
! CTGGTGGATATTCTACCAAT+TGG - chr1_3:4318562-4318581 Msa0098390:CDS 40.0%
GTATATTCTCAGGATGGCTA+TGG - chr1_3:4318741-4318760 Msa0098390:intron 40.0%
TATCAACAACCACCACAATC+AGG - chr1_3:4318768-4318787 Msa0098390:intron 40.0%
ATCAACAACCACCACAATCA+GGG - chr1_3:4318769-4318788 Msa0098390:intron 40.0%
TGCTGCTGATCATATGATGT+TGG + chr1_3:4318804-4318823 None:intergenic 40.0%
!! ATCCATAGTTGGTGGTAGTT+TGG + chr1_3:4318869-4318888 None:intergenic 40.0%
ACCACCAACTATGGATCAAA+AGG - chr1_3:4318873-4318892 Msa0098390:intron 40.0%
CCACCAACTATGGATCAAAA+GGG - chr1_3:4318874-4318893 Msa0098390:intron 40.0%
CACCAACTATGGATCAAAAG+GGG - chr1_3:4318875-4318894 Msa0098390:intron 40.0%
! ATCCCCTTTTGATCCATAGT+TGG + chr1_3:4318880-4318899 None:intergenic 40.0%
! CATAACCTTGTTGTGAAGGT+TGG + chr1_3:4318923-4318942 None:intergenic 40.0%
CAACCTTCACAACAAGGTTA+TGG - chr1_3:4318921-4318940 Msa0098390:intron 40.0%
! CTACCATAACCTTGTTGTGA+AGG + chr1_3:4318927-4318946 None:intergenic 40.0%
!!! ACTTGGCTTTTGAGTTTGAG+GGG + chr1_3:4319078-4319097 None:intergenic 40.0%
!!! CACTTGGCTTTTGAGTTTGA+GGG + chr1_3:4319079-4319098 None:intergenic 40.0%
TACCATCAGCAGAATATGCT+GGG + chr1_3:4319349-4319368 None:intergenic 40.0%
TTACCATCAGCAGAATATGC+TGG + chr1_3:4319350-4319369 None:intergenic 40.0%
CAATCTCAAAGTTGCAAAGC+TGG + chr1_3:4319537-4319556 None:intergenic 40.0%
GAACAAATCTGATAGGAGGT+TGG - chr1_3:4319659-4319678 Msa0098390:five_prime_UTR 40.0%
! TGAGTCTGTGTCACGTGTTT+TGG + chr1_3:4312944-4312963 None:intergenic 45.0%
AAGAAACCCTAGCTGTAGCT+GGG + chr1_3:4312985-4313004 None:intergenic 45.0%
TCAGCCATTGGAACTGGAAT+TGG + chr1_3:4313027-4313046 None:intergenic 45.0%
TATTGCGATTCGTCAGCCAT+TGG + chr1_3:4313039-4313058 None:intergenic 45.0%
TTCGTCGTACTTGCGTTTCA+GGG + chr1_3:4313079-4313098 None:intergenic 45.0%
TTGTTGTAAGAAGGAGGAGG+AGG + chr1_3:4313144-4313163 None:intergenic 45.0%
ACGTTGTTGTAAGAAGGAGG+AGG + chr1_3:4313147-4313166 None:intergenic 45.0%
CTGACCTGATGAATCGTAAG+GGG + chr1_3:4313301-4313320 None:intergenic 45.0%
CACTGACCTGATGAATCGTA+AGG + chr1_3:4313303-4313322 None:intergenic 45.0%
GAAATCCCTAATGGAAGGGT+TGG - chr1_3:4314016-4314035 Msa0098390:CDS 45.0%
CATCCATATCACGGGTAACT+TGG + chr1_3:4314105-4314124 None:intergenic 45.0%
AGGATCAGCATCCATATCAC+GGG + chr1_3:4314113-4314132 None:intergenic 45.0%
!!! CATTGTGAGCTGGTTTTTGG+AGG - chr1_3:4314315-4314334 Msa0098390:intron 45.0%
!!! AGCTGGTTTTTGGAGGGTTT+TGG - chr1_3:4314322-4314341 Msa0098390:intron 45.0%
! TTTTAACAGGCTGAGTCTGG+AGG - chr1_3:4314733-4314752 Msa0098390:intron 45.0%
CTTGTTACTCGACGAATGAC+TGG - chr1_3:4314763-4314782 Msa0098390:intron 45.0%
TAAGACCAACCTGTAGACAC+AGG + chr1_3:4314928-4314947 None:intergenic 45.0%
GCAAAACTAGACTTGGCACA+TGG + chr1_3:4315418-4315437 None:intergenic 45.0%
!! CTATGCAATCTGTCGGCTTT+CGG - chr1_3:4315785-4315804 Msa0098390:intron 45.0%
ACGCCTTAGCCATGAAGAAA+TGG + chr1_3:4315913-4315932 None:intergenic 45.0%
CTTCTCAGTCCTTGCTAACT+CGG - chr1_3:4316173-4316192 Msa0098390:intron 45.0%
GACACAAAACCGAGTTAGCA+AGG + chr1_3:4316185-4316204 None:intergenic 45.0%
! GTGATACCAATCTTTTGCGC+AGG - chr1_3:4316350-4316369 Msa0098390:intron 45.0%
AGTATCTAGGTTGTGACCAG+AGG + chr1_3:4316448-4316467 None:intergenic 45.0%
GTTGTCCTTGTGTCATATGC+TGG - chr1_3:4316971-4316990 Msa0098390:intron 45.0%
! GTTGTCCTCTTGTTGTATGC+TGG - chr1_3:4317106-4317125 Msa0098390:intron 45.0%
! GTTGTCCTCGTGTTTTATGC+TGG - chr1_3:4317300-4317319 Msa0098390:CDS 45.0%
TAGCTCCAGCATAAAACACG+AGG + chr1_3:4317308-4317327 None:intergenic 45.0%
ACGAGAAGAGGCTATAAGAG+CGG + chr1_3:4317525-4317544 None:intergenic 45.0%
AGAAATCCATCAATGTCCGG+TGG - chr1_3:4318375-4318394 Msa0098390:intron 45.0%
GCTTCTCAACAACCTGGTTA+TGG - chr1_3:4318453-4318472 Msa0098390:CDS 45.0%
TTGCTGAGGCACATTGTACT+GGG + chr1_3:4318514-4318533 None:intergenic 45.0%
!! TAACCTGCATAAGCTTGCTG+AGG + chr1_3:4318528-4318547 None:intergenic 45.0%
AGAATATCCACCAGCTGAGT+GGG + chr1_3:4318556-4318575 None:intergenic 45.0%
TAGAATATCCACCAGCTGAG+TGG + chr1_3:4318557-4318576 None:intergenic 45.0%
! ATCCGCTGGTTATAACCAAC+CGG - chr1_3:4318713-4318732 Msa0098390:intron 45.0%
! CCCTTTTGATCCATAGTTGG+TGG + chr1_3:4318877-4318896 None:intergenic 45.0%
GTGGATAGTTGGCAGCATTT+GGG + chr1_3:4318965-4318984 None:intergenic 45.0%
! AACCAGACTGTGTTTGAGGT+TGG + chr1_3:4319049-4319068 None:intergenic 45.0%
CCATAACCAGACTGTGTTTG+AGG + chr1_3:4319053-4319072 None:intergenic 45.0%
CCTCAAACACAGTCTGGTTA+TGG - chr1_3:4319050-4319069 Msa0098390:intron 45.0%
!!! CTTGGCTTTTGAGTTTGAGG+GGG + chr1_3:4319077-4319096 None:intergenic 45.0%
!!! CCACTTGGCTTTTGAGTTTG+AGG + chr1_3:4319080-4319099 None:intergenic 45.0%
CCTCAAACTCAAAAGCCAAG+TGG - chr1_3:4319077-4319096 Msa0098390:intron 45.0%
TTGGGAATATCCAGAAGGAG+GGG + chr1_3:4319183-4319202 None:intergenic 45.0%
GTTGGGAATATCCAGAAGGA+GGG + chr1_3:4319184-4319203 None:intergenic 45.0%
TCTGGTTGGGAATATCCAGA+AGG + chr1_3:4319188-4319207 None:intergenic 45.0%
GGTTATGGTCCTCCATCATA+TGG - chr1_3:4319236-4319255 Msa0098390:intron 45.0%
! TATGACGGAGGACCATATGA+TGG + chr1_3:4319251-4319270 None:intergenic 45.0%
TCATATGGTCCTCCGTCATA+TGG - chr1_3:4319251-4319270 Msa0098390:intron 45.0%
ACCATCAGCAGAATATGCTG+GGG + chr1_3:4319348-4319367 None:intergenic 45.0%
! TCTGCTGATGGTAATGCAAG+TGG - chr1_3:4319356-4319375 Msa0098390:CDS 45.0%
! CTGCTGATGGTAATGCAAGT+GGG - chr1_3:4319357-4319376 Msa0098390:CDS 45.0%
TCAAAGTTGCAAAGCTGGGT+AGG + chr1_3:4319532-4319551 None:intergenic 45.0%
!!! TATTTTTTATTTGAAAATAT+AGG - chr1_3:4314619-4314638 Msa0098390:intron 5.0%
TCTATCCCCAGCTACAGCTA+GGG - chr1_3:4312976-4312995 Msa0098390:three_prime_UTR 50.0%
AGAAACCCTAGCTGTAGCTG+GGG + chr1_3:4312984-4313003 None:intergenic 50.0%
GAAGAAACCCTAGCTGTAGC+TGG + chr1_3:4312986-4313005 None:intergenic 50.0%
GATTCGTCAGCCATTGGAAC+TGG + chr1_3:4313033-4313052 None:intergenic 50.0%
TACTTGCGTTTCAGGGAAGG+TGG + chr1_3:4313072-4313091 None:intergenic 50.0%
TCGTACTTGCGTTTCAGGGA+AGG + chr1_3:4313075-4313094 None:intergenic 50.0%
GTTCGTCGTACTTGCGTTTC+AGG + chr1_3:4313080-4313099 None:intergenic 50.0%
GGGACGTTGTTGTAAGAAGG+AGG + chr1_3:4313150-4313169 None:intergenic 50.0%
GATGAGTTCGAAATCAGCGG+TGG + chr1_3:4313181-4313200 None:intergenic 50.0%
CTCCCTCTGATGTCGTCAAA+CGG - chr1_3:4313250-4313269 Msa0098390:CDS 50.0%
GTCCGTTTGACGACATCAGA+GGG + chr1_3:4313255-4313274 None:intergenic 50.0%
AGGAGGACCGTTGTCGAATT+TGG + chr1_3:4313277-4313296 None:intergenic 50.0%
GATGAATCGTAAGGGGAAGG+AGG + chr1_3:4313294-4313313 None:intergenic 50.0%
CCTGATGAATCGTAAGGGGA+AGG + chr1_3:4313297-4313316 None:intergenic 50.0%
CCTTCCCCTTACGATTCATC+AGG - chr1_3:4313294-4313313 Msa0098390:CDS 50.0%
GACCCTTGATGCGAATACGA+AGG + chr1_3:4313983-4314002 None:intergenic 50.0%
!! CTTAGGGTGTCATTGTGAGC+TGG - chr1_3:4314305-4314324 Msa0098390:intron 50.0%
!!! GGTTTTGGAGCCAAGAGCTT+TGG - chr1_3:4314337-4314356 Msa0098390:intron 50.0%
! TTTGGAGCCAAGAGCTTTGG+AGG - chr1_3:4314340-4314359 Msa0098390:intron 50.0%
!! TTGGAGCCAAGAGCTTTGGA+GGG - chr1_3:4314341-4314360 Msa0098390:intron 50.0%
ACTTAGCCCTCCAAAGCTCT+TGG + chr1_3:4314350-4314369 None:intergenic 50.0%
TACTCGACGAATGACTGGAC+AGG - chr1_3:4314768-4314787 Msa0098390:intron 50.0%
ACTCGACGAATGACTGGACA+GGG - chr1_3:4314769-4314788 Msa0098390:intron 50.0%
!! CCTAGGCCCACCTTGTTATT+TGG + chr1_3:4314823-4314842 None:intergenic 50.0%
CCAAATAACAAGGTGGGCCT+AGG - chr1_3:4314820-4314839 Msa0098390:intron 50.0%
ATTCCTCTTCATCTTCCCCC+AGG - chr1_3:4315236-4315255 Msa0098390:intron 50.0%
TTTCAGTGGATGTGTCGCCT+GGG + chr1_3:4315256-4315275 None:intergenic 50.0%
TGATTCAATCCTCAGTGGCG+AGG - chr1_3:4315331-4315350 Msa0098390:intron 50.0%
CAAAACATACCTCGCCACTG+AGG + chr1_3:4315343-4315362 None:intergenic 50.0%
CGAAAGCCGACAGATTGCAT+AGG + chr1_3:4315787-4315806 None:intergenic 50.0%
GGTCGGTATGATGTCATCAC+TGG - chr1_3:4316663-4316682 Msa0098390:intron 50.0%
TATTGGGTGAAGTTTGGGGG+AGG - chr1_3:4317707-4317726 Msa0098390:intron 50.0%
CTCGATCTGGTACGGTATGT+TGG - chr1_3:4318148-4318167 Msa0098390:intron 50.0%
GAGTAACCACCGGACATTGA+TGG + chr1_3:4318384-4318403 None:intergenic 50.0%
ACCTTGCTGAGAGTAACCAC+CGG + chr1_3:4318394-4318413 None:intergenic 50.0%
CTCAGCAAGGTTACCAAGCT+CGG - chr1_3:4318403-4318422 Msa0098390:intron 50.0%
TGTACTGGGAAGTTGGACCA+GGG + chr1_3:4318500-4318519 None:intergenic 50.0%
TTGTACTGGGAAGTTGGACC+AGG + chr1_3:4318501-4318520 None:intergenic 50.0%
GGCACATTGTACTGGGAAGT+TGG + chr1_3:4318507-4318526 None:intergenic 50.0%
CTTGCTGAGGCACATTGTAC+TGG + chr1_3:4318515-4318534 None:intergenic 50.0%
GAATATCCACCAGCTGAGTG+GGG + chr1_3:4318555-4318574 None:intergenic 50.0%
TTGTAAGCAGTCCCATCAGC+TGG + chr1_3:4318678-4318697 None:intergenic 50.0%
TACAATCAACCACCATCCGC+TGG - chr1_3:4318699-4318718 Msa0098390:intron 50.0%
TGGTTATAACCAGCGGATGG+TGG + chr1_3:4318711-4318730 None:intergenic 50.0%
! GGTTGGTTATAACCAGCGGA+TGG + chr1_3:4318714-4318733 None:intergenic 50.0%
! TCCGCTGGTTATAACCAACC+GGG - chr1_3:4318714-4318733 Msa0098390:intron 50.0%
TCCTGAGAATATACCTGCCC+CGG + chr1_3:4318735-4318754 None:intergenic 50.0%
GGGCAGGTATATTCTCAGGA+TGG - chr1_3:4318735-4318754 Msa0098390:intron 50.0%
TGAGCATACCCTGATTGTGG+TGG + chr1_3:4318780-4318799 None:intergenic 50.0%
TTGAGCTGACCCATAGCTTG+GGG + chr1_3:4318841-4318860 None:intergenic 50.0%
CTTGAGCTGACCCATAGCTT+GGG + chr1_3:4318842-4318861 None:intergenic 50.0%
TCTTGAGCTGACCCATAGCT+TGG + chr1_3:4318843-4318862 None:intergenic 50.0%
AAGCTATGGGTCAGCTCAAG+AGG - chr1_3:4318842-4318861 Msa0098390:intron 50.0%
AGCTATGGGTCAGCTCAAGA+GGG - chr1_3:4318843-4318862 Msa0098390:intron 50.0%
GGCCAAACTACCACCAACTA+TGG - chr1_3:4318864-4318883 Msa0098390:intron 50.0%
AGGTTGGACAGGTGGAACTT+GGG + chr1_3:4318907-4318926 None:intergenic 50.0%
AAGGTTGGACAGGTGGAACT+TGG + chr1_3:4318908-4318927 None:intergenic 50.0%
TGTTGTGAAGGTTGGACAGG+TGG + chr1_3:4318915-4318934 None:intergenic 50.0%
! CCTTGTTGTGAAGGTTGGAC+AGG + chr1_3:4318918-4318937 None:intergenic 50.0%
CCTGTCCAACCTTCACAACA+AGG - chr1_3:4318915-4318934 Msa0098390:intron 50.0%
TAGTTGGCAGCATTTGGGCT+AGG + chr1_3:4318960-4318979 None:intergenic 50.0%
GGTGGATAGTTGGCAGCATT+TGG + chr1_3:4318966-4318985 None:intergenic 50.0%
CTGCCAACTATCCACCACAA+GGG - chr1_3:4318970-4318989 Msa0098390:intron 50.0%
TGCCAACTATCCACCACAAG+GGG - chr1_3:4318971-4318990 Msa0098390:intron 50.0%
! TTGGCTGCCATATGCTGCTT+GGG + chr1_3:4319030-4319049 None:intergenic 50.0%
AGCCAACCTCAAACACAGTC+TGG - chr1_3:4319044-4319063 Msa0098390:intron 50.0%
TGTGATTGTCCGTATGCAGG+CGG + chr1_3:4319107-4319126 None:intergenic 50.0%
GACTGTGATTGTCCGTATGC+AGG + chr1_3:4319110-4319129 None:intergenic 50.0%
TCACAGTCACCTAATGCTGC+TGG - chr1_3:4319122-4319141 Msa0098390:intron 50.0%
CCATAACCTCCAGCAGCATT+AGG + chr1_3:4319134-4319153 None:intergenic 50.0%
CCTAATGCTGCTGGAGGTTA+TGG - chr1_3:4319131-4319150 Msa0098390:intron 50.0%
CTGGAGGTTATGGTCAACCT+GGG - chr1_3:4319141-4319160 Msa0098390:intron 50.0%
TGGGAATATCCAGAAGGAGG+GGG + chr1_3:4319182-4319201 None:intergenic 50.0%
GGTTGGGAATATCCAGAAGG+AGG + chr1_3:4319185-4319204 None:intergenic 50.0%
GGATATTCCCAACCAGAAGC+AGG - chr1_3:4319191-4319210 Msa0098390:intron 50.0%
! TTGAGAGCCTGCTTCTGGTT+GGG + chr1_3:4319201-4319220 None:intergenic 50.0%
TTTGAGAGCCTGCTTCTGGT+TGG + chr1_3:4319202-4319221 None:intergenic 50.0%
!! TCTCAAAGAGCACCACCTTC+TGG - chr1_3:4319215-4319234 Msa0098390:intron 50.0%
! AGAGCACCACCTTCTGGTTA+TGG - chr1_3:4319221-4319240 Msa0098390:intron 50.0%
GATGGAGGACCATAACCAGA+AGG + chr1_3:4319233-4319252 None:intergenic 50.0%
CTGAGGATAACCAGCACCAT+AGG + chr1_3:4319324-4319343 None:intergenic 50.0%
!! CTATGGTGCTGGTTATCCTC+AGG - chr1_3:4319322-4319341 Msa0098390:CDS 50.0%
TCCATCATAGCTACCACCAC+GGG + chr1_3:4319387-4319406 None:intergenic 50.0%
CTCCATCATAGCTACCACCA+CGG + chr1_3:4319388-4319407 None:intergenic 50.0%
! TATGATGGAGCACCTGCACA+GGG - chr1_3:4319398-4319417 Msa0098390:CDS 50.0%
GTTGCAAAGCTGGGTAGGTA+AGG + chr1_3:4319527-4319546 None:intergenic 50.0%
CTAGCTGTAGCTGGGGATAG+AGG + chr1_3:4312977-4312996 None:intergenic 55.0%
CTCTATCCCCAGCTACAGCT+AGG - chr1_3:4312975-4312994 Msa0098390:three_prime_UTR 55.0%
AAACCGGTGGTTCGTGAGTG+AGG + chr1_3:4313111-4313130 None:intergenic 55.0%
GGGGGGACGTTGTTGTAAGA+AGG + chr1_3:4313153-4313172 None:intergenic 55.0%
AGTTCGAAATCAGCGGTGGC+GGG + chr1_3:4313177-4313196 None:intergenic 55.0%
GAGTTCGAAATCAGCGGTGG+CGG + chr1_3:4313178-4313197 None:intergenic 55.0%
GGTCCGTTTGACGACATCAG+AGG + chr1_3:4313256-4313275 None:intergenic 55.0%
CAGGCTGAGTCTGGAGGTAA+TGG - chr1_3:4314739-4314758 Msa0098390:intron 55.0%
TTCAGTGGATGTGTCGCCTG+GGG + chr1_3:4315255-4315274 None:intergenic 55.0%
CTTTCAGTGGATGTGTCGCC+TGG + chr1_3:4315257-4315276 None:intergenic 55.0%
AGGGATGTCTGGGTTTCCTC+TGG - chr1_3:4316429-4316448 Msa0098390:intron 55.0%
TCCGGTGGTTACTCTCAGCA+AGG - chr1_3:4318390-4318409 Msa0098390:intron 55.0%
AGGTTGTTGAGAAGCGGCAG+GGG + chr1_3:4318448-4318467 None:intergenic 55.0%
CAGGTTGTTGAGAAGCGGCA+GGG + chr1_3:4318449-4318468 None:intergenic 55.0%
GGCTGTGCATAGCCATAACC+AGG + chr1_3:4318468-4318487 None:intergenic 55.0%
GGTTATGGCTATGCACAGCC+TGG - chr1_3:4318468-4318487 Msa0098390:CDS 55.0%
GTGCCTCAGCAAGCTTATGC+AGG - chr1_3:4318522-4318541 Msa0098390:CDS 55.0%
!! TGCAGTGGACTGGTCCCAAT+TGG + chr1_3:4318580-4318599 None:intergenic 55.0%
CCAGGATTCTGCTGTTGCTG+AGG + chr1_3:4318642-4318661 None:intergenic 55.0%
CCTCAGCAACAGCAGAATCC+TGG - chr1_3:4318639-4318658 Msa0098390:CDS 55.0%
CAGCAACAGCAGAATCCTGG+TGG - chr1_3:4318642-4318661 Msa0098390:CDS 55.0%
TAAGCAGTCCCATCAGCTGG+AGG + chr1_3:4318675-4318694 None:intergenic 55.0%
! CCCCGGTTGGTTATAACCAG+CGG + chr1_3:4318718-4318737 None:intergenic 55.0%
! CCGCTGGTTATAACCAACCG+GGG - chr1_3:4318715-4318734 Msa0098390:intron 55.0%
TGGTTATAACCAACCGGGGC+AGG - chr1_3:4318719-4318738 Msa0098390:intron 55.0%
GAGAATATACCTGCCCCGGT+TGG + chr1_3:4318731-4318750 None:intergenic 55.0%
ACCGGGGCAGGTATATTCTC+AGG - chr1_3:4318731-4318750 Msa0098390:intron 55.0%
GGCTGAGCATACCCTGATTG+TGG + chr1_3:4318783-4318802 None:intergenic 55.0%
TATGGCTCAGCCCCAAGCTA+TGG - chr1_3:4318828-4318847 Msa0098390:intron 55.0%
ATGGCTCAGCCCCAAGCTAT+GGG - chr1_3:4318829-4318848 Msa0098390:intron 55.0%
! CAGCATTTGGGCTAGGCTGT+TGG + chr1_3:4318953-4318972 None:intergenic 55.0%
GCTGCCAACTATCCACCACA+AGG - chr1_3:4318969-4318988 Msa0098390:intron 55.0%
!! AGCCCCTTGTGGTGGATAGT+TGG + chr1_3:4318976-4318995 None:intergenic 55.0%
GGGCTGCTCAGCCAAGTTAT+GGG - chr1_3:4318991-4319010 Msa0098390:intron 55.0%
GGCTGCTCAGCCAAGTTATG+GGG - chr1_3:4318992-4319011 Msa0098390:intron 55.0%
GTTGGCGGTACCCCATAACT+TGG + chr1_3:4319005-4319024 None:intergenic 55.0%
! TATGCTGCTTGGGAGGTTGG+CGG + chr1_3:4319020-4319039 None:intergenic 55.0%
! CCATATGCTGCTTGGGAGGT+TGG + chr1_3:4319023-4319042 None:intergenic 55.0%
CCAACCTCCCAAGCAGCATA+TGG - chr1_3:4319020-4319039 Msa0098390:intron 55.0%
GTTGGCTGCCATATGCTGCT+TGG + chr1_3:4319031-4319050 None:intergenic 55.0%
! TATGCAGGCGGAGTACCACT+TGG + chr1_3:4319095-4319114 None:intergenic 55.0%
AGTGGTACTCCGCCTGCATA+CGG - chr1_3:4319095-4319114 Msa0098390:intron 55.0%
CAGTCACCTAATGCTGCTGG+AGG - chr1_3:4319125-4319144 Msa0098390:intron 55.0%
GCTGGAGGTTATGGTCAACC+TGG - chr1_3:4319140-4319159 Msa0098390:intron 55.0%
ATATCCAGAAGGAGGGGGCT+GGG + chr1_3:4319177-4319196 None:intergenic 55.0%
AATATCCAGAAGGAGGGGGC+TGG + chr1_3:4319178-4319197 None:intergenic 55.0%
! GCTCTTTGAGAGCCTGCTTC+TGG + chr1_3:4319206-4319225 None:intergenic 55.0%
GGAGGACCATAACCAGAAGG+TGG + chr1_3:4319230-4319249 None:intergenic 55.0%
GACGGAGGACCATATGATGG+AGG + chr1_3:4319248-4319267 None:intergenic 55.0%
!! CCTGCAGGAGCACCATATGA+CGG + chr1_3:4319266-4319285 None:intergenic 55.0%
TCATATGGTGCTCCTGCAGG+CGG - chr1_3:4319266-4319285 Msa0098390:intron 55.0%
CGGTCAACCTGGTTATGGTC+AGG - chr1_3:4319286-4319305 Msa0098390:intron 55.0%
TGTGGTGCCTGACCATAACC+AGG + chr1_3:4319296-4319315 None:intergenic 55.0%
GGTTATGGTCAGGCACCACA+TGG - chr1_3:4319296-4319315 Msa0098390:intron 55.0%
CAGGCACCACATGGTTCCTA+TGG - chr1_3:4319305-4319324 Msa0098390:intron 55.0%
CCAGCACCATAGGAACCATG+TGG + chr1_3:4319314-4319333 None:intergenic 55.0%
CCACATGGTTCCTATGGTGC+TGG - chr1_3:4319311-4319330 Msa0098390:intron 55.0%
GCCCCAGCATATTCTGCTGA+TGG - chr1_3:4319344-4319363 Msa0098390:CDS 55.0%
AATGCAAGTGGGAATGCCCG+TGG - chr1_3:4319368-4319387 Msa0098390:CDS 55.0%
! CTATGATGGAGCACCTGCAC+AGG - chr1_3:4319397-4319416 Msa0098390:CDS 55.0%
GTGGTTCGTGAGTGAGGAGG+TGG + chr1_3:4313105-4313124 None:intergenic 60.0%
CCTCCTCACTCACGAACCAC+CGG - chr1_3:4313105-4313124 Msa0098390:three_prime_UTR 60.0%
!! CGAACCACCGGTTTCTCCGA+CGG - chr1_3:4313117-4313136 Msa0098390:three_prime_UTR 60.0%
AGGAGGTCCGTCGGAGAAAC+CGG + chr1_3:4313127-4313146 None:intergenic 60.0%
AGAAGGAGGAGGAGGTCCGT+CGG + chr1_3:4313136-4313155 None:intergenic 60.0%
GACGACATCAGAGGGAGCAG+CGG + chr1_3:4313247-4313266 None:intergenic 60.0%
CGACGAATGACTGGACAGGG+TGG - chr1_3:4314772-4314791 Msa0098390:intron 60.0%
TCGCCTGGGGGAAGATGAAG+AGG + chr1_3:4315242-4315261 None:intergenic 60.0%
TCAGTGGATGTGTCGCCTGG+GGG + chr1_3:4315254-4315273 None:intergenic 60.0%
GGTTGTTGAGAAGCGGCAGG+GGG + chr1_3:4318447-4318466 None:intergenic 60.0%
CCAGGTTGTTGAGAAGCGGC+AGG + chr1_3:4318450-4318469 None:intergenic 60.0%
! CCTGCCGCTTCTCAACAACC+TGG - chr1_3:4318447-4318466 Msa0098390:CDS 60.0%
GTTGGACCAGGGTATGCTCC+AGG + chr1_3:4318489-4318508 None:intergenic 60.0%
GGTTATCCTCCCCACTCAGC+TGG - chr1_3:4318543-4318562 Msa0098390:CDS 60.0%
TATCCTCCCCACTCAGCTGG+TGG - chr1_3:4318546-4318565 Msa0098390:CDS 60.0%
TATCCACCAGCTGAGTGGGG+AGG + chr1_3:4318552-4318571 None:intergenic 60.0%
AGACTGCTGGGCAGTTGCAG+TGG + chr1_3:4318595-4318614 None:intergenic 60.0%
GTCCTGCACCTCCAGCTGAT+GGG - chr1_3:4318664-4318683 Msa0098390:CDS 60.0%
GGGGCTGCTCAGCCAAGTTA+TGG - chr1_3:4318990-4319009 Msa0098390:intron 60.0%
! GCTGCCATATGCTGCTTGGG+AGG + chr1_3:4319027-4319046 None:intergenic 60.0%
!! GCAGGAGCACCATATGACGG+AGG + chr1_3:4319263-4319282 None:intergenic 60.0%
CCGTCATATGGTGCTCCTGC+AGG - chr1_3:4319263-4319282 Msa0098390:intron 60.0%
! TAACCAGGTTGACCGCCTGC+AGG + chr1_3:4319281-4319300 None:intergenic 60.0%
GCAGGCGGTCAACCTGGTTA+TGG - chr1_3:4319281-4319300 Msa0098390:intron 60.0%
GCAGAATATGCTGGGGCCTG+AGG + chr1_3:4319341-4319360 None:intergenic 60.0%
GCCCGTGGTGGTAGCTATGA+TGG - chr1_3:4319383-4319402 Msa0098390:CDS 60.0%
CCGGTGGTTCGTGAGTGAGG+AGG + chr1_3:4313108-4313127 None:intergenic 65.0%
AGGTCCGTCGGAGAAACCGG+TGG + chr1_3:4313124-4313143 None:intergenic 65.0%
!! AAATCAGCGGTGGCGGGAGG+GGG + chr1_3:4313171-4313190 None:intergenic 65.0%
!! GAAATCAGCGGTGGCGGGAG+GGG + chr1_3:4313172-4313191 None:intergenic 65.0%
!! CGAAATCAGCGGTGGCGGGA+GGG + chr1_3:4313173-4313192 None:intergenic 65.0%
!! TCGAAATCAGCGGTGGCGGG+AGG + chr1_3:4313174-4313193 None:intergenic 65.0%
GGCACCAGAGAGGAGACGAG+CGG + chr1_3:4313226-4313245 None:intergenic 65.0%
! GGGAGAGGGTGTGCTTCTGC+TGG - chr1_3:4318109-4318128 Msa0098390:intron 65.0%
AGCTAGAGGGTGGCCGAGCT+TGG + chr1_3:4318419-4318438 None:intergenic 65.0%
AAGCTCGGCCACCCTCTAGC+TGG - chr1_3:4318418-4318437 Msa0098390:CDS 65.0%
AGCTCGGCCACCCTCTAGCT+GGG - chr1_3:4318419-4318438 Msa0098390:CDS 65.0%
GCACAGCCTGGAGCATACCC+TGG - chr1_3:4318480-4318499 Msa0098390:CDS 65.0%
GCTGGGCAGTTGCAGTGGAC+TGG + chr1_3:4318590-4318609 None:intergenic 65.0%
GGTCCTGCACCTCCAGCTGA+TGG - chr1_3:4318663-4318682 Msa0098390:CDS 65.0%
! GTCCCATCAGCTGGAGGTGC+AGG + chr1_3:4318669-4318688 None:intergenic 65.0%
CTTGGCTGAGCAGCCCCTTG+TGG + chr1_3:4318987-4319006 None:intergenic 65.0%
GGCTGGGAAGGAGGATACCC+AGG + chr1_3:4319161-4319180 None:intergenic 65.0%
GCAAGTGGGAATGCCCGTGG+TGG - chr1_3:4319371-4319390 Msa0098390:CDS 65.0%
ACCTGCACAGGGAGCTCAGC+AGG - chr1_3:4319409-4319428 Msa0098390:CDS 65.0%
!! AATCAGCGGTGGCGGGAGGG+GGG + chr1_3:4313170-4313189 None:intergenic 70.0%
GTCGCCGCTCGTCTCCTCTC+TGG - chr1_3:4313219-4313238 Msa0098390:CDS 70.0%
AGGGAGCAGCGGCACCAGAG+AGG + chr1_3:4313236-4313255 None:intergenic 70.0%
GCAGGGGGAGCCCAGCTAGA+GGG + chr1_3:4318432-4318451 None:intergenic 70.0%
! GCTGGAGGTGCAGGACCACC+AGG + chr1_3:4318660-4318679 None:intergenic 70.0%
GGCTGAGCAGCCCCTTGTGG+TGG + chr1_3:4318984-4319003 None:intergenic 70.0%
GAAGGAGGGGGCTGGGAAGG+AGG + chr1_3:4319170-4319189 None:intergenic 70.0%
CCAGAAGGAGGGGGCTGGGA+AGG + chr1_3:4319173-4319192 None:intergenic 70.0%
CCTTCCCAGCCCCCTCCTTC+TGG - chr1_3:4319170-4319189 Msa0098390:intron 70.0%
GCTCCTGCAGGCGGTCAACC+TGG - chr1_3:4319275-4319294 Msa0098390:intron 70.0%
GCCTGCTGAGCTCCCTGTGC+AGG + chr1_3:4319413-4319432 None:intergenic 70.0%
GGGGGAGCCCAGCTAGAGGG+TGG + chr1_3:4318429-4318448 None:intergenic 75.0%
GGCAGGGGGAGCCCAGCTAG+AGG + chr1_3:4318433-4318452 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 4312940 4319691 4312940 ID=Msa0098390;Name=Msa0098390
chr1_3 mRNA 4312940 4319691 4312940 ID=Msa0098390-mRNA-1;Parent=Msa0098390;Name=Msa0098390-mRNA-1;_AED=0.29;_eAED=0.29;_QI=99|1|1|1|1|1|6|231|642
chr1_3 exon 4312940 4314265 4312940 ID=Msa0098390-mRNA-1:exon:1483;Parent=Msa0098390-mRNA-1
chr1_3 exon 4317279 4317398 4317279 ID=Msa0098390-mRNA-1:exon:1482;Parent=Msa0098390-mRNA-1
chr1_3 exon 4317622 4317693 4317622 ID=Msa0098390-mRNA-1:exon:1481;Parent=Msa0098390-mRNA-1
chr1_3 exon 4317800 4317889 4317800 ID=Msa0098390-mRNA-1:exon:1480;Parent=Msa0098390-mRNA-1
chr1_3 exon 4318412 4318686 4318412 ID=Msa0098390-mRNA-1:exon:1479;Parent=Msa0098390-mRNA-1
chr1_3 exon 4319316 4319691 4319316 ID=Msa0098390-mRNA-1:exon:1478;Parent=Msa0098390-mRNA-1
chr1_3 five_prime_UTR 4319593 4319691 4319593 ID=Msa0098390-mRNA-1:five_prime_utr;Parent=Msa0098390-mRNA-1
chr1_3 CDS 4319316 4319592 4319316 ID=Msa0098390-mRNA-1:cds;Parent=Msa0098390-mRNA-1
chr1_3 CDS 4318412 4318686 4318412 ID=Msa0098390-mRNA-1:cds;Parent=Msa0098390-mRNA-1
chr1_3 CDS 4317800 4317889 4317800 ID=Msa0098390-mRNA-1:cds;Parent=Msa0098390-mRNA-1
chr1_3 CDS 4317622 4317693 4317622 ID=Msa0098390-mRNA-1:cds;Parent=Msa0098390-mRNA-1
chr1_3 CDS 4317279 4317398 4317279 ID=Msa0098390-mRNA-1:cds;Parent=Msa0098390-mRNA-1
chr1_3 CDS 4313171 4314265 4313171 ID=Msa0098390-mRNA-1:cds;Parent=Msa0098390-mRNA-1
chr1_3 three_prime_UTR 4312940 4313170 4312940 ID=Msa0098390-mRNA-1:three_prime_utr;Parent=Msa0098390-mRNA-1
Gene Sequence

>Msa0098390

ATGGCTGACGAATCGCAATACGACTCAACTCCACCTTCCCTGAAACGCAAGTACGACGAACAGCCACCTCCTCACTCACGAACCACCGGTTTCTCCGACGGACCTCCTCCTCCTTCTTACAACAACGTCCCCCCTCCCGCCACCGCTGATTTCGAACTCATCAAACAACGCGCTCAACAAGTCGCCGCTCGTCTCCTCTCTGGTGCCGCTGCTCCCTCTGATGTCGTCAAACGGACCAAATTCGACAACGGTCCTCCTTCCCCTTACGATTCATCAGATTTGAAGAGTCAATATGCAGCTCCTATGAGTATACCTTCGTATTCGCATCAAGGGTCAAGCAAGAAGATTGAAATCCCTAATGGAAGGGTTGGTGTTATTATTGGAAAAGGTGGAGAAACTATCAAGTATCTTCAGTTGCAATCTGGTGCAAAAATCCAAGTTACCCGTGATATGGATGCTGATCCTAATTCTCCAAATAGATTAGTTGAGCTTACTGGTACTTCTGATGCTATTGCTACTGCTGAGAAACTCATCAATGAAGTTCTTGCTGAGGCTGAGTCTGGAGGTAATGGACTTGTTACTCGACGAATGACTGGACAGGGTGGCGCTGATGAGTTTTCCATGAAGATTCCAAATAACAAGGTTGGTCTTATAATCGGTAAAGGTGGAGAAACGATAAAGAGTATGCAAGCTACAACTGGAGCAAGAATTCAGGTGATTCCTCTTCATCTTCCCCCAGGCGACACATCCACTGAAAGAACATTAAAAATTGAAGGGACCTCTGAACAAATTGAATCTGCAAAACAATTGGTTGATTCAATCCTCAGTGGCGAGAATCGTCTTAGAAATCCATCAATGTCCGGTGGTTACTCTCAGCAAGGTTACCAAGCTCGGCCACCCTCTAGCTGGGCTCCCCCTGCCGCTTCTCAACAACCTGGTTATGGCTATGCACAGCCTGGAGCATACCCTGGTCCAACTTCCCAGTACAATGTGCCTCAGCAAGCTTATGCAGGTTATCCTCCCCACTCAGCTGGTGGATATTCTACCAATTGGGACCAGTCCACTGCAACTGCCCAGCAGTCTACCTATGATTATTATAATCAACAGCCTCAGCAACAGCAGAATCCTGGTGGTCCTGCACCTCCAGCTGATGGGACTGCTTACAATTACAATCAACCACCATCCGCTGGTTATAACCAACCGGGGCAGGTATATTCTCAGGATGGCTATGGTGCATATCAACAACCACCACAATCAGGGTATGCTCAGCCAACATCATATGATCAGCAGCAAATCTATGGCTCAGCCCCAAGCTATGGGTCAGCTCAAGAGGGCCAAACTACCACCAACTATGGATCAAAAGGGGATTCAACCCAAGTTCCACCTGTCCAACCTTCACAACAAGGTTATGGTAGCAGCCAACAGCCTAGCCCAAATGCTGCCAACTATCCACCACAAGGGGCTGCTCAGCCAAGTTATGGGGTACCGCCAACCTCCCAAGCAGCATATGGCAGCCAACCTCAAACACAGTCTGGTTATGGACCCCCTCAAACTCAAAAGCCAAGTGGTACTCCGCCTGCATACGGACAATCACAGTCACCTAATGCTGCTGGAGGTTATGGTCAACCTGGGTATCCTCCTTCCCAGCCCCCTCCTTCTGGATATTCCCAACCAGAAGCAGGCTCTCAAAGAGCACCACCTTCTGGTTATGGTCCTCCATCATATGGTCCTCCGTCATATGGTGCTCCTGCAGGCGGTCAACCTGGTTATGGTCAGGCACCACATGGTTCCTATGGTGCTGGTTATCCTCAGGCCCCAGCATATTCTGCTGATGGTAATGCAAGTGGGAATGCCCGTGGTGGTAGCTATGATGGAGCACCTGCACAGGGAGCTCAGCAGGCTAGTGTTGCTAAGTCACCTCAGAGCTGA
Protein sequence

>Msa0098390

MADESQYDSTPPSLKRKYDEQPPPHSRTTGFSDGPPPPSYNNVPPPATADFELIKQRAQQVAARLLSGAAAPSDVVKRTKFDNGPPSPYDSSDLKSQYAAPMSIPSYSHQGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVELTGTSDAIATAEKLINEVLAEAESGGNGLVTRRMTGQGGADEFSMKIPNNKVGLIIGKGGETIKSMQATTGARIQVIPLHLPPGDTSTERTLKIEGTSEQIESAKQLVDSILSGENRLRNPSMSGGYSQQGYQARPPSSWAPPAASQQPGYGYAQPGAYPGPTSQYNVPQQAYAGYPPHSAGGYSTNWDQSTATAQQSTYDYYNQQPQQQQNPGGPAPPADGTAYNYNQPPSAGYNQPGQVYSQDGYGAYQQPPQSGYAQPTSYDQQQIYGSAPSYGSAQEGQTTTNYGSKGDSTQVPPVQPSQQGYGSSQQPSPNAANYPPQGAAQPSYGVPPTSQAAYGSQPQTQSGYGPPQTQKPSGTPPAYGQSQSPNAAGGYGQPGYPPSQPPPSGYSQPEAGSQRAPPSGYGPPSYGPPSYGAPAGGQPGYGQAPHGSYGAGYPQAPAYSADGNASGNARGGSYDGAPAQGAQQASVAKSPQS*