Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517610 | XP_013461490.1 | 94.834 | 871 | 44 | 1 | 1 | 870 | 1 | 871 | 0.0 | 1687 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517610 | sp|Q9FHK4|EDR4_ARATH | 47.826 | 92 | 43 | 1 | 635 | 721 | 461 | 552 | 3.53e-20 | 99.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517610 | A0A072VBG6 | 94.834 | 871 | 44 | 1 | 1 | 870 | 1 | 871 | 0.0 | 1687 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0517610 | 0.857236 | 1.872815e-62 | -8.615850e-47 |
| Msa0011050 | Msa0517610 | 0.803882 | 2.819944e-49 | -8.615850e-47 |
| Msa0013280 | Msa0517610 | 0.854384 | 1.275730e-61 | -8.615850e-47 |
| Msa0048390 | Msa0517610 | 0.803002 | 4.291639e-49 | -8.615850e-47 |
| Msa0060070 | Msa0517610 | 0.807676 | 4.499724e-50 | -8.615850e-47 |
| Msa0062180 | Msa0517610 | 0.831047 | 2.082769e-55 | -8.615850e-47 |
| Msa0064140 | Msa0517610 | 0.835775 | 1.378533e-56 | -8.615850e-47 |
| Msa0081620 | Msa0517610 | 0.800805 | 1.212888e-48 | -8.615850e-47 |
| Msa0086560 | Msa0517610 | 0.813385 | 2.629320e-51 | -8.615850e-47 |
| Msa0092410 | Msa0517610 | 0.808718 | 2.698649e-50 | -8.615850e-47 |
| Msa0106530 | Msa0517610 | 0.879405 | 1.279862e-69 | -8.615850e-47 |
| Msa0119440 | Msa0517610 | 0.816114 | 6.532555e-52 | -8.615850e-47 |
| Msa0136630 | Msa0517610 | 0.806215 | 9.165831e-50 | -8.615850e-47 |
| Msa0151220 | Msa0517610 | 0.821140 | 4.730625e-53 | -8.615850e-47 |
| Msa0155210 | Msa0517610 | 0.814456 | 1.526823e-51 | -8.615850e-47 |
| Msa0162690 | Msa0517610 | 0.844131 | 9.140062e-59 | -8.615850e-47 |
| Msa0187310 | Msa0517610 | 0.821856 | 3.231496e-53 | -8.615850e-47 |
| Msa0187830 | Msa0517610 | 0.806921 | 6.504757e-50 | -8.615850e-47 |
| Msa0194010 | Msa0517610 | 0.806283 | 8.866483e-50 | -8.615850e-47 |
| Msa0201570 | Msa0517610 | 0.844562 | 7.002337e-59 | -8.615850e-47 |
| Msa0235880 | Msa0517610 | 0.807365 | 5.238684e-50 | -8.615850e-47 |
| Msa0364790 | Msa0517610 | 0.832549 | 8.874139e-56 | -8.615850e-47 |
| Msa0372460 | Msa0517610 | 0.812367 | 4.394072e-51 | -8.615850e-47 |
| Msa0377840 | Msa0517610 | 0.976172 | 2.552360e-141 | -8.615850e-47 |
| Msa0380600 | Msa0517610 | 0.811836 | 5.736944e-51 | -8.615850e-47 |
| Msa0408340 | Msa0517610 | 0.828957 | 6.735467e-55 | -8.615850e-47 |
| Msa0412260 | Msa0517610 | 0.804706 | 1.899121e-49 | -8.615850e-47 |
| Msa0426560 | Msa0517610 | 0.985858 | 6.823638e-165 | -8.615850e-47 |
| Msa0430240 | Msa0517610 | 0.806449 | 8.180710e-50 | -8.615850e-47 |
| Msa0456770 | Msa0517610 | 0.806901 | 6.569119e-50 | -8.615850e-47 |
| Msa0473140 | Msa0517610 | 0.961704 | 5.186569e-120 | -8.615850e-47 |
| Msa0259440 | Msa0517610 | 0.803613 | 3.206907e-49 | -8.615850e-47 |
| Msa0260530 | Msa0517610 | 0.801358 | 9.349134e-49 | -8.615850e-47 |
| Msa0277410 | Msa0517610 | 0.845100 | 5.011746e-59 | -8.615850e-47 |
| Msa0282720 | Msa0517610 | 0.832202 | 1.081298e-55 | -8.615850e-47 |
| Msa0305620 | Msa0517610 | 0.803181 | 3.939737e-49 | -8.615850e-47 |
| Msa0501410 | Msa0517610 | 0.823525 | 1.321468e-53 | -8.615850e-47 |
| Msa0512980 | Msa0517610 | 0.805015 | 1.637243e-49 | -8.615850e-47 |
| Msa0517610 | Msa0524330 | 0.835325 | 1.791578e-56 | -8.615850e-47 |
| Msa0517610 | Msa0524440 | 0.858270 | 9.247065e-63 | -8.615850e-47 |
| Msa0517610 | Msa0558390 | 0.806709 | 7.209208e-50 | -8.615850e-47 |
| Msa0517610 | Msa0572560 | 0.821303 | 4.338916e-53 | -8.615850e-47 |
| Msa0517610 | Msa0574600 | 0.830676 | 2.567811e-55 | -8.615850e-47 |
| Msa0517610 | Msa0580920 | 0.825666 | 4.138311e-54 | -8.615850e-47 |
| Msa0517610 | Msa0599150 | 0.806819 | 6.834921e-50 | -8.615850e-47 |
| Msa0517610 | Msa0697570 | 0.814072 | 1.856292e-51 | -8.615850e-47 |
| Msa0517610 | Msa0697590 | 0.804435 | 2.163753e-49 | -8.615850e-47 |
| Msa0517610 | Msa0708310 | 0.829993 | 3.772063e-55 | -8.615850e-47 |
| Msa0517610 | Msa0775920 | 0.806918 | 6.514738e-50 | -8.615850e-47 |
| Msa0517610 | Msa0813260 | 0.802582 | 5.239859e-49 | -8.615850e-47 |
| Msa0517610 | Msa0853810 | 0.804067 | 2.581045e-49 | -8.615850e-47 |
| Msa0517610 | Msa0860250 | 0.820220 | 7.694168e-53 | -8.615850e-47 |
| Msa0517610 | Msa0898320 | 0.800102 | 1.686644e-48 | -8.615850e-47 |
| Msa0517610 | Msa0968050 | 0.834053 | 3.744426e-56 | -8.615850e-47 |
| Msa0517610 | Msa0982780 | 0.811889 | 5.586081e-51 | -8.615850e-47 |
| Msa0517610 | Msa1043120 | 0.841160 | 5.624492e-58 | -8.615850e-47 |
| Msa0517610 | Msa1109670 | 0.804666 | 1.936406e-49 | -8.615850e-47 |
| Msa0517610 | Msa1214170 | 0.825671 | 4.128362e-54 | -8.615850e-47 |
| Msa0517610 | Msa1225100 | 0.809048 | 2.293613e-50 | -8.615850e-47 |
| Msa0517610 | Msa1238690 | 0.812023 | 5.222950e-51 | -8.615850e-47 |
| Msa0517610 | Msa1260680 | 0.836627 | 8.375497e-57 | -8.615850e-47 |
| Msa0517610 | Msa1280150 | 0.830780 | 2.422081e-55 | -8.615850e-47 |
| Msa0517610 | Msa1285200 | 0.821157 | 4.687944e-53 | -8.615850e-47 |
| Msa0517610 | Msa1329870 | 0.808281 | 3.344811e-50 | -8.615850e-47 |
| Msa0517610 | Msa1353890 | 0.834218 | 3.403499e-56 | -8.615850e-47 |
| Msa0517610 | Msa1360020 | 0.825239 | 5.223062e-54 | -8.615850e-47 |
| Msa0517610 | Msa1363810 | 0.806551 | 7.785124e-50 | -8.615850e-47 |
| Msa0517610 | Msa1367530 | 0.861919 | 7.310812e-64 | -8.615850e-47 |
| Msa0517610 | Msa1376450 | 0.811288 | 7.546915e-51 | -8.615850e-47 |
| Msa0517610 | Msa1379580 | 0.819553 | 1.093424e-52 | -8.615850e-47 |
| Msa0517610 | Msa1389760 | 0.800888 | 1.166913e-48 | -8.615850e-47 |
| Msa0517610 | Msa1405220 | 0.800878 | 1.171902e-48 | -8.615850e-47 |
| Msa0517610 | Msa1405820 | 0.858457 | 8.133405e-63 | -8.615850e-47 |
| Msa0517610 | Msa1408180 | 0.838841 | 2.263236e-57 | -8.615850e-47 |
| Msa0517610 | Msa1424580 | 0.820132 | 8.060393e-53 | -8.615850e-47 |
| Msa0517610 | Msa1424630 | 0.844124 | 9.179266e-59 | -8.615850e-47 |
| Msa0517610 | Msa1430550 | 0.821772 | 3.379993e-53 | -8.615850e-47 |
| Msa0517610 | Msa1448980 | 0.839051 | 1.997002e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517610 | MtrunA17_Chr3g0128631 | 94.834 | 871 | 44 | 1 | 1 | 870 | 1 | 871 | 0.0 | 1687 |
| Msa0517610 | MtrunA17_Chr7g0268371 | 58.333 | 144 | 51 | 4 | 458 | 593 | 4 | 146 | 3.39e-40 | 145 |
| Msa0517610 | MtrunA17_Chr5g0428461 | 52.128 | 94 | 43 | 2 | 1 | 92 | 1 | 94 | 2.85e-17 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517610 | AT5G05190.1 | 47.826 | 92 | 43 | 1 | 635 | 721 | 461 | 552 | 3.58e-21 | 99.4 |
| Msa0517610 | AT3G56410.3 | 45.714 | 70 | 38 | 0 | 645 | 714 | 223 | 292 | 6.78e-13 | 73.6 |
| Msa0517610 | AT3G56410.1 | 45.714 | 70 | 38 | 0 | 645 | 714 | 312 | 381 | 8.37e-13 | 73.2 |
| Msa0517610 | AT3G56410.2 | 45.714 | 70 | 38 | 0 | 645 | 714 | 359 | 428 | 9.11e-13 | 73.2 |
Find 192 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCATATTATGATGATTA+TGG | 0.138733 | 3_4:-69303225 | Msa0517610:CDS |
| GCAGATGCGGTGTTGATTTC+TGG | 0.149630 | 3_4:-69304872 | Msa0517610:CDS |
| GAAATCACTGAAACTAATTT+TGG | 0.164374 | 3_4:-69304914 | Msa0517610:CDS |
| TGTAACTGGCTTCTCTTTAT+TGG | 0.169718 | 3_4:+69304832 | None:intergenic |
| ACATTTAACTATCCGAATTT+TGG | 0.174552 | 3_4:+69305928 | None:intergenic |
| TCACAGTGAGTGATGTTATT+TGG | 0.210386 | 3_4:+69305061 | None:intergenic |
| TCAAAGTTTAATGGTGTTCT+TGG | 0.238441 | 3_4:-69304434 | Msa0517610:CDS |
| GTTTCAGTGATTTCCATTTC+AGG | 0.261394 | 3_4:+69304923 | None:intergenic |
| GATCATAGTTCAAAGTTTAA+TGG | 0.262570 | 3_4:-69304443 | Msa0517610:CDS |
| GGAAGAAGTTGCCGGCATTT+AGG | 0.282712 | 3_4:+69305905 | None:intergenic |
| AATCCTGAAGTGGAAATTAT+TGG | 0.286338 | 3_4:-69304800 | Msa0517610:CDS |
| TCAAGAGAGTGTTATTTAGA+TGG | 0.287618 | 3_4:-69305208 | Msa0517610:CDS |
| GGATTTGCACCTTCTGTAAC+TGG | 0.294631 | 3_4:+69304818 | None:intergenic |
| GAACAAATTAAGTCCTCTTT+TGG | 0.307285 | 3_4:+69304995 | None:intergenic |
| TTCCAGTAATTTCCCCTTCA+AGG | 0.315354 | 3_4:+69304663 | None:intergenic |
| TTTCCAATAATTTCCACTTC+AGG | 0.322328 | 3_4:+69304797 | None:intergenic |
| TGCCTTCTGAGTGACAATTT+AGG | 0.324245 | 3_4:+69305106 | None:intergenic |
| TTTCATATTATGATGATTAT+GGG | 0.327417 | 3_4:-69303224 | Msa0517610:CDS |
| TGGAGCTGATTTATCACTAT+TGG | 0.334684 | 3_4:+69304697 | None:intergenic |
| TACAGCTAAGAAACAAAGTT+TGG | 0.337502 | 3_4:-69305377 | Msa0517610:intron |
| ATTATTGGAAATGATTTAGA+AGG | 0.342099 | 3_4:-69304785 | Msa0517610:CDS |
| ATTGAGGAGATAAGTAATAA+TGG | 0.344048 | 3_4:-69305037 | Msa0517610:CDS |
| ATAGCTGATTGGTCATTGTT+AGG | 0.346593 | 3_4:+69304563 | None:intergenic |
| TGCATTGATTTCTTGCATAC+TGG | 0.352905 | 3_4:+69305339 | None:intergenic |
| TGTTGTGTCCACTTCAGATT+TGG | 0.354447 | 3_4:+69304532 | None:intergenic |
| CTTGTTGCTTCAGCTGAATA+AGG | 0.358091 | 3_4:+69303774 | None:intergenic |
| AGCTCCTCGTATGGGGATCT+TGG | 0.360440 | 3_4:-69304296 | Msa0517610:CDS |
| GTTGAGCTAGGAGAGACATT+TGG | 0.361833 | 3_4:+69303111 | None:intergenic |
| TCATCATGCACTCCATTTGA+TGG | 0.364226 | 3_4:+69304095 | None:intergenic |
| AACCTTGAAGGGGAAATTAC+TGG | 0.369393 | 3_4:-69304665 | Msa0517610:CDS |
| TTGAGCTAGGAGAGACATTT+GGG | 0.377528 | 3_4:+69303112 | None:intergenic |
| TTCATTACAAAGACCAAAAG+AGG | 0.384209 | 3_4:-69305008 | Msa0517610:CDS |
| ATAATCATCATAATATGAAA+TGG | 0.389072 | 3_4:+69303227 | None:intergenic |
| CAGGAAATTGTCAGCAGAAA+AGG | 0.389892 | 3_4:-69302989 | Msa0517610:CDS |
| CCTTCAAGGTTCGTACCAAC+TGG | 0.397424 | 3_4:+69304677 | None:intergenic |
| TTTCCTGGTTTCAGACATAC+TGG | 0.398983 | 3_4:+69303005 | None:intergenic |
| CTGTGGTGAGGAAATACTTA+AGG | 0.400170 | 3_4:-69303569 | Msa0517610:CDS |
| GATAGGGGACAGACCTGAAA+TGG | 0.402925 | 3_4:-69304936 | Msa0517610:CDS |
| TATGACAAATCAGCTCTGAT+AGG | 0.403629 | 3_4:-69304953 | Msa0517610:CDS |
| CTCTCCTAGCTCAACATTCA+AGG | 0.405053 | 3_4:-69303103 | Msa0517610:CDS |
| TCTTCATCTGTGAACTTGAA+TGG | 0.406814 | 3_4:+69305154 | None:intergenic |
| GCCCCTCTTATCACTTTACT+TGG | 0.409919 | 3_4:+69302913 | None:intergenic |
| GTTCACAGATGAAGAAGAAC+TGG | 0.414179 | 3_4:-69305146 | Msa0517610:CDS |
| CTGTGCTGTCTTTCATGACA+TGG | 0.414712 | 3_4:+69304237 | None:intergenic |
| TCCAACATGAAGATTTATAC+AGG | 0.415572 | 3_4:-69303674 | Msa0517610:CDS |
| AACATATTTACCACCATTCA+AGG | 0.420023 | 3_4:+69303137 | None:intergenic |
| ACAGAATATCCTTGAGGCTC+TGG | 0.425857 | 3_4:+69305884 | None:intergenic |
| ATTTGTTCATCTGATGAAGA+TGG | 0.427120 | 3_4:-69304980 | Msa0517610:CDS |
| GTAAGGTGGTTACCAAAATT+CGG | 0.427969 | 3_4:-69305940 | Msa0517610:CDS |
| CAAGAAATCAATGCAGCTCC+TGG | 0.432286 | 3_4:-69305331 | Msa0517610:CDS |
| CCTTTCTCATCGAATACTAT+AGG | 0.433792 | 3_4:-69303351 | Msa0517610:CDS |
| GAGTGTTATTTAGATGGAAA+TGG | 0.434349 | 3_4:-69305202 | Msa0517610:CDS |
| TCGAGAATGCCTTACAGATC+AGG | 0.435054 | 3_4:-69304134 | Msa0517610:CDS |
| TCCGCGAGTACTTATGCCTT+TGG | 0.441596 | 3_4:+69303799 | None:intergenic |
| GGAGTAGAAGACTTGAATAA+TGG | 0.442556 | 3_4:-69304764 | Msa0517610:CDS |
| CCAGTTGGTACGAACCTTGA+AGG | 0.447258 | 3_4:-69304677 | Msa0517610:CDS |
| CTTAAGGGACAAACATAACT+TGG | 0.447454 | 3_4:-69303553 | Msa0517610:CDS |
| TCCTCGGAAAGATAGTTTGA+AGG | 0.454231 | 3_4:-69305248 | Msa0517610:CDS |
| GAAGGTCATGGCTATGGTAT+TGG | 0.459591 | 3_4:+69303895 | None:intergenic |
| CACTAACCACCTCGCTTCTA+CGG | 0.460505 | 3_4:+69303307 | None:intergenic |
| CGTAGAAGCGAGGTGGTTAG+TGG | 0.462545 | 3_4:-69303306 | Msa0517610:CDS |
| CAATGACCAATCAGCTATAG+AGG | 0.463430 | 3_4:-69304558 | Msa0517610:CDS |
| TATATTTGAAGGAATATGTC+TGG | 0.464306 | 3_4:-69305962 | None:intergenic |
| GAGGTAAAGCCTCCACAAAA+AGG | 0.465708 | 3_4:-69302967 | Msa0517610:CDS |
| ACGGATACAGATGAATCAAC+TGG | 0.473634 | 3_4:-69303036 | Msa0517610:CDS |
| CAACAAATTCATCCCTTGAA+TGG | 0.475924 | 3_4:-69303150 | Msa0517610:CDS |
| ATATGAGCTTCTTGTGGTTG+AGG | 0.478521 | 3_4:+69304391 | None:intergenic |
| TGGTATCCTCTATAGCTGAT+TGG | 0.481238 | 3_4:+69304552 | None:intergenic |
| ACACCAAGTAAAGTGATAAG+AGG | 0.482329 | 3_4:-69302916 | Msa0517610:CDS |
| TTGCTAATAGCTCCTCGTAT+GGG | 0.484351 | 3_4:-69304304 | Msa0517610:CDS |
| ATGACAAATCAGCTCTGATA+GGG | 0.484835 | 3_4:-69304952 | Msa0517610:CDS |
| CTTTCATAGCCTGATCTGTA+AGG | 0.485476 | 3_4:+69304125 | None:intergenic |
| TAATCATCATAATATGAAAT+GGG | 0.485762 | 3_4:+69303228 | None:intergenic |
| TGTGGTGAGGAAATACTTAA+GGG | 0.486354 | 3_4:-69303568 | Msa0517610:CDS |
| GTTATTTGGACCACCTTTGT+TGG | 0.486422 | 3_4:+69305075 | None:intergenic |
| CATCACTCACTGTGAGATTG+AGG | 0.490880 | 3_4:-69305053 | Msa0517610:CDS |
| TTCTGCTGGTGTATCTTACA+AGG | 0.491674 | 3_4:-69303937 | Msa0517610:CDS |
| GCTGAAGGAATGACCAGAAA+AGG | 0.496200 | 3_4:-69304335 | Msa0517610:CDS |
| AGAAGAACTGGAAAGTGAGT+TGG | 0.496772 | 3_4:-69305134 | Msa0517610:CDS |
| AGGTACTCTTCATAAACTCA+TGG | 0.498632 | 3_4:-69302947 | Msa0517610:CDS |
| TTTGTTGTGTAAGAGAAAGA+AGG | 0.499054 | 3_4:+69303166 | None:intergenic |
| TAAGAGGGGCATCTTGTTGA+AGG | 0.499268 | 3_4:-69302900 | None:intergenic |
| GAAAGTGGCAGGCCATCAAA+TGG | 0.507500 | 3_4:-69304107 | Msa0517610:CDS |
| GTGTACAAGTGTGGTGGATG+TGG | 0.512363 | 3_4:-69305863 | Msa0517610:CDS |
| GCATATTGATAGAAAACGTC+AGG | 0.513186 | 3_4:-69305275 | Msa0517610:CDS |
| AAGGAATATGTCTGGTAAGG+TGG | 0.515393 | 3_4:-69305954 | None:intergenic |
| CGACATCACAAGCCAGTGGC+AGG | 0.515436 | 3_4:-69303525 | Msa0517610:CDS |
| CTTGATCACTCTAGATGTAT+CGG | 0.516311 | 3_4:-69303849 | Msa0517610:CDS |
| GCCATGACCTTCATGAGGGA+AGG | 0.519968 | 3_4:-69303884 | Msa0517610:CDS |
| TCCTCTCCTTCTCCCTCTTG+TGG | 0.520199 | 3_4:+69304602 | None:intergenic |
| AATCTGCAGGTAGCTGAAGC+AGG | 0.520263 | 3_4:+69303466 | None:intergenic |
| CGAGTACTTATGCCTTTGGC+GGG | 0.521127 | 3_4:+69303803 | None:intergenic |
| GAGGCTCTGGAAGAAGTTGC+CGG | 0.525192 | 3_4:+69305897 | None:intergenic |
| ACCTGTATAAATCTTCATGT+TGG | 0.526192 | 3_4:+69303673 | None:intergenic |
| GTTGATTCATCTGTATCCGT+TGG | 0.526902 | 3_4:+69303039 | None:intergenic |
| TCTGGTCATTCCTTCAGCAA+CGG | 0.529453 | 3_4:+69304340 | None:intergenic |
| ATTACTGGAAACAATATAGC+AGG | 0.531297 | 3_4:-69304650 | Msa0517610:CDS |
| GGATGTGGCACTGACCTTCA+AGG | 0.532393 | 3_4:-69305848 | Msa0517610:intron |
| TTTGGAAACTTGTCGCTAGA+GGG | 0.532723 | 3_4:-69304896 | Msa0517610:CDS |
| AAAGGAGCTCCACCTGCCAC+TGG | 0.533821 | 3_4:+69303513 | None:intergenic |
| CCTCATGAAGGTCATGGCTA+TGG | 0.534051 | 3_4:+69303889 | None:intergenic |
| TTTGCCTTGAATGTTGAGCT+AGG | 0.534758 | 3_4:+69303099 | None:intergenic |
| TAGTTAAATGTCCTAAATGC+CGG | 0.534878 | 3_4:-69305916 | Msa0517610:CDS |
| TAATGCAATCGCGGCTCCAA+CGG | 0.535239 | 3_4:-69303055 | Msa0517610:CDS |
| CCTATAGTATTCGATGAGAA+AGG | 0.535878 | 3_4:+69303351 | None:intergenic |
| TTGAAGGAATATGTCTGGTA+AGG | 0.536667 | 3_4:-69305957 | None:intergenic |
| CATTTATGACAAGTGACAAA+AGG | 0.537261 | 3_4:+69303495 | None:intergenic |
| CCTCCAGTATGTCTGAAACC+AGG | 0.539270 | 3_4:-69303008 | Msa0517610:CDS |
| CAGTTGGTACGAACCTTGAA+GGG | 0.541921 | 3_4:-69304676 | Msa0517610:CDS |
| CACCAAGTAAAGTGATAAGA+GGG | 0.542812 | 3_4:-69302915 | Msa0517610:CDS |
| AAATGCAAGCAATGAGATTG+TGG | 0.546365 | 3_4:-69304492 | Msa0517610:CDS |
| GATCAGGCTATGAAAGTGGC+AGG | 0.549263 | 3_4:-69304118 | Msa0517610:CDS |
| CTCGCGTGAGGACACTGACC+AGG | 0.551465 | 3_4:-69304048 | Msa0517610:CDS |
| GCGAGTACTTATGCCTTTGG+CGG | 0.552548 | 3_4:+69303802 | None:intergenic |
| TGCTAATAGCTCCTCGTATG+GGG | 0.553250 | 3_4:-69304303 | Msa0517610:CDS |
| CTTGCTAATAGCTCCTCGTA+TGG | 0.554567 | 3_4:-69304305 | Msa0517610:CDS |
| TGTATCGGAAGATGTAATCA+TGG | 0.555125 | 3_4:-69303834 | Msa0517610:CDS |
| GAGAAAACCTTCCCTCATGA+AGG | 0.564438 | 3_4:+69303877 | None:intergenic |
| GCCACAAGAGGGAGAAGGAG+AGG | 0.568068 | 3_4:-69304603 | Msa0517610:CDS |
| ATCAAATGGAGTGCATGATG+AGG | 0.568884 | 3_4:-69304093 | Msa0517610:CDS |
| ATGGAATTGCGTCCCGCCAA+AGG | 0.570672 | 3_4:-69303815 | Msa0517610:CDS |
| TAATGGCAATTTGCCACTAG+AGG | 0.571741 | 3_4:-69304747 | Msa0517610:CDS |
| CTGCTGGTGTATCTTACAAG+GGG | 0.572567 | 3_4:-69303935 | Msa0517610:CDS |
| TACAGATCAGGCTATGAAAG+TGG | 0.576466 | 3_4:-69304122 | Msa0517610:CDS |
| TGCAGCTCCTGGAAAAGCAT+CGG | 0.577154 | 3_4:-69305320 | Msa0517610:CDS |
| AAAGAGAAGCCAGTTACAGA+AGG | 0.579951 | 3_4:-69304827 | Msa0517610:CDS |
| ACAAATGGAAGAGTTTCTGC+TGG | 0.583470 | 3_4:-69303951 | Msa0517610:CDS |
| AGAGGATACCAAATCTGAAG+TGG | 0.584314 | 3_4:-69304540 | Msa0517610:CDS |
| CATCACAAGCCAGTGGCAGG+TGG | 0.586203 | 3_4:-69303522 | Msa0517610:CDS |
| ACATATTTACCACCATTCAA+GGG | 0.586967 | 3_4:+69303138 | None:intergenic |
| ACCTTCCCTCATGAAGGTCA+TGG | 0.587046 | 3_4:+69303883 | None:intergenic |
| GGTATTGGTATGCAGAACTA+CGG | 0.587389 | 3_4:+69303910 | None:intergenic |
| ACTATGATCTCTTAATTCTG+TGG | 0.588099 | 3_4:+69304457 | None:intergenic |
| GGTACTCTTCATAAACTCAT+GGG | 0.590389 | 3_4:-69302946 | Msa0517610:CDS |
| AAGTGGCCACAAGAGGGAGA+AGG | 0.591131 | 3_4:-69304608 | Msa0517610:CDS |
| TTATAAAGGAGAAAATCTGC+AGG | 0.591353 | 3_4:+69303453 | None:intergenic |
| TAATGGAAAGTGGCCACAAG+AGG | 0.592409 | 3_4:-69304615 | Msa0517610:CDS |
| GCCTTCAAACTATCTTTCCG+AGG | 0.593288 | 3_4:+69305247 | None:intergenic |
| GTCGCTAGAGGGAGCAGATG+CGG | 0.597570 | 3_4:-69304885 | Msa0517610:CDS |
| AATGCTTACACCGTTGCTGA+AGG | 0.598914 | 3_4:-69304350 | Msa0517610:CDS |
| TACCTAAATTGTCACTCAGA+AGG | 0.601587 | 3_4:-69305108 | Msa0517610:CDS |
| GGAATGACCAGAAAAGGTAA+AGG | 0.602415 | 3_4:-69304329 | Msa0517610:CDS |
| AGAAGGTGCAAATCCTGAAG+TGG | 0.603285 | 3_4:-69304810 | Msa0517610:CDS |
| TCTGCTGGTGTATCTTACAA+GGG | 0.604895 | 3_4:-69303936 | Msa0517610:CDS |
| CTACGGTGAAGCTCACGAGA+TGG | 0.605302 | 3_4:+69303324 | None:intergenic |
| TCAAATGGAGTGCATGATGA+GGG | 0.605561 | 3_4:-69304092 | Msa0517610:CDS |
| TATATGAGTGAGGAAACAAA+TGG | 0.606561 | 3_4:-69303966 | Msa0517610:CDS |
| CAAATTCATCCCTTGAATGG+TGG | 0.607888 | 3_4:-69303147 | Msa0517610:CDS |
| GATCTGTAAGGCATTCTCGA+TGG | 0.608638 | 3_4:+69304137 | None:intergenic |
| GAAAACGTCAGGTTCTTCCT+CGG | 0.608765 | 3_4:-69305264 | Msa0517610:CDS |
| CTAAGACACGGGAACAACAA+TGG | 0.613621 | 3_4:+69303721 | None:intergenic |
| CACAACATGGTAATTCACGT+TGG | 0.615905 | 3_4:-69304187 | Msa0517610:CDS |
| ACAAGAAGCTCATATATCAC+AGG | 0.619189 | 3_4:-69304383 | Msa0517610:CDS |
| TCTTTCACACGACTCGCGTG+AGG | 0.622099 | 3_4:-69304060 | Msa0517610:CDS |
| GAAATTGTCAGCAGAAAAGG+AGG | 0.624190 | 3_4:-69302986 | Msa0517610:CDS |
| TGTGATATATGAGCTTCTTG+TGG | 0.626127 | 3_4:+69304385 | None:intergenic |
| CCAGAATTAAAATCCTCTAG+TGG | 0.627898 | 3_4:+69304734 | None:intergenic |
| GGCATAGGGCTACTGTGGTG+AGG | 0.627962 | 3_4:-69303581 | Msa0517610:CDS |
| AGAAGAATCTGCTAAGACAC+GGG | 0.628845 | 3_4:+69303710 | None:intergenic |
| GTATGTCACAAGCTGAAATG+TGG | 0.632938 | 3_4:-69303426 | Msa0517610:CDS |
| AATGGAAAGTGGCCACAAGA+GGG | 0.635120 | 3_4:-69304614 | Msa0517610:CDS |
| CATAGAGTGTCCAACAAAGG+TGG | 0.635172 | 3_4:-69305085 | Msa0517610:CDS |
| TCTGTTTCACTGAAGCATTG+TGG | 0.635814 | 3_4:+69303618 | None:intergenic |
| GAGAAGAATCTGCTAAGACA+CGG | 0.636353 | 3_4:+69303709 | None:intergenic |
| TCAGAGGCATAGGGCTACTG+TGG | 0.638205 | 3_4:-69303586 | Msa0517610:CDS |
| TGACAAATCAGCTCTGATAG+GGG | 0.640991 | 3_4:-69304951 | Msa0517610:CDS |
| GAAATGTGGTAAATGTTCAG+AGG | 0.642119 | 3_4:-69303412 | Msa0517610:CDS |
| TCTGAAGTGGACACAACAGA+AGG | 0.642126 | 3_4:-69304527 | Msa0517610:CDS |
| GATGGAAATGGTGAGTACAA+TGG | 0.642186 | 3_4:-69305190 | Msa0517610:CDS |
| CAACTTCTTCCAGAGCCTCA+AGG | 0.642945 | 3_4:-69305893 | Msa0517610:CDS |
| CCTGGTTTCAGACATACTGG+AGG | 0.645462 | 3_4:+69303008 | None:intergenic |
| CCATAGCCATGACCTTCATG+AGG | 0.648193 | 3_4:-69303889 | Msa0517610:CDS |
| AGTGATAAATCAGCTCCAGT+TGG | 0.651091 | 3_4:-69304692 | Msa0517610:CDS |
| AGGCATAGAGTGTCCAACAA+AGG | 0.653537 | 3_4:-69305088 | Msa0517610:CDS |
| CAAGACTCGCTATATGAGTG+AGG | 0.657867 | 3_4:-69303976 | Msa0517610:CDS |
| CATAGCCATGACCTTCATGA+GGG | 0.658552 | 3_4:-69303888 | Msa0517610:CDS |
| TATTCTGTGTACAAGTGTGG+TGG | 0.659670 | 3_4:-69305869 | Msa0517610:CDS |
| GGTAACAAGAATGATCTACA+TGG | 0.670834 | 3_4:+69303742 | None:intergenic |
| TGAGCTTCACCGTAGAAGCG+AGG | 0.674280 | 3_4:-69303316 | Msa0517610:CDS |
| AGTTGGTACGAACCTTGAAG+GGG | 0.674859 | 3_4:-69304675 | Msa0517610:CDS |
| GCCAAAGGCATAAGTACTCG+CGG | 0.688085 | 3_4:-69303800 | Msa0517610:CDS |
| TGTTCCAAGATCCCCATACG+AGG | 0.688484 | 3_4:+69304292 | None:intergenic |
| CATACGAGGAGCTATTAGCA+AGG | 0.689093 | 3_4:+69304306 | None:intergenic |
| ACCAAGTAAAGTGATAAGAG+GGG | 0.689921 | 3_4:-69302914 | Msa0517610:CDS |
| GGATATTCTGTGTACAAGTG+TGG | 0.693148 | 3_4:-69305872 | Msa0517610:CDS |
| TAGTTGACATGAGATACTGA+TGG | 0.696878 | 3_4:+69303273 | None:intergenic |
| GGAAATGGTGAGTACAATGG+CGG | 0.699790 | 3_4:-69305187 | Msa0517610:CDS |
| GTGTTGGACAATACACAACA+TGG | 0.710351 | 3_4:-69304200 | Msa0517610:CDS |
| TAAGCGACATCACAAGCCAG+TGG | 0.712041 | 3_4:-69303529 | Msa0517610:CDS |
| TTGTACACAGAATATCCTTG+AGG | 0.719345 | 3_4:+69305878 | None:intergenic |
| TCATGTTGGAAATGAACACG+TGG | 0.723896 | 3_4:+69303687 | None:intergenic |
| GCTTCACCGTAGAAGCGAGG+TGG | 0.726929 | 3_4:-69303313 | Msa0517610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATTTATATCAATCAAAT+AGG | + | chr3_4:69303253-69303272 | None:intergenic | 15.0% |
| !!! | TTAATATCATTATTTGAAAC+CGG | + | chr3_4:69303387-69303406 | None:intergenic | 15.0% |
| !!! | AAAAATTAAATAATGGAAAG+TGG | - | chr3_4:69304225-69304244 | Msa0517610:CDS | 15.0% |
| !! | TAATCATCATAATATGAAAT+GGG | + | chr3_4:69305625-69305644 | None:intergenic | 15.0% |
| !! | ATAATCATCATAATATGAAA+TGG | + | chr3_4:69305626-69305645 | None:intergenic | 15.0% |
| !! | ATTTCATATTATGATGATTA+TGG | - | chr3_4:69305625-69305644 | Msa0517610:intron | 15.0% |
| !! | TTTCATATTATGATGATTAT+GGG | - | chr3_4:69305626-69305645 | Msa0517610:intron | 15.0% |
| !! | ATTATTGGAAATGATTTAGA+AGG | - | chr3_4:69304065-69304084 | Msa0517610:CDS | 20.0% |
| !! | ACATTTAACTATCCGAATTT+TGG | + | chr3_4:69302925-69302944 | None:intergenic | 25.0% |
| !! | AATTAGATTTTTCACCTTGA+AGG | + | chr3_4:69303019-69303038 | None:intergenic | 25.0% |
| !! | AGTAAAATTGAAGAGTACAA+TGG | + | chr3_4:69303055-69303074 | None:intergenic | 25.0% |
| ! | TATAACAGAATACATGACAT+TGG | + | chr3_4:69303215-69303234 | None:intergenic | 25.0% |
| ! | AATTCTCATGTAAATGTTGT+TGG | + | chr3_4:69303325-69303344 | None:intergenic | 25.0% |
| ! | TGAGAATTTCTATGAATATC+CGG | - | chr3_4:69303365-69303384 | Msa0517610:CDS | 25.0% |
| ! | ATTGAGGAGATAAGTAATAA+TGG | - | chr3_4:69303813-69303832 | Msa0517610:CDS | 25.0% |
| !! | GAAATCACTGAAACTAATTT+TGG | - | chr3_4:69303936-69303955 | Msa0517610:CDS | 25.0% |
| ! | GCAGGAGAAAAATTAAATAA+TGG | - | chr3_4:69304218-69304237 | Msa0517610:CDS | 25.0% |
| ! | GATCATAGTTCAAAGTTTAA+TGG | - | chr3_4:69304407-69304426 | Msa0517610:CDS | 25.0% |
| ! | AGTGAATAAAAACAAAGTGT+TGG | - | chr3_4:69304634-69304653 | Msa0517610:CDS | 25.0% |
| ! | AAAAATGAAACTGATGAGAA+TGG | - | chr3_4:69304826-69304845 | Msa0517610:CDS | 25.0% |
| !! | TGTGACATACTCTTTTATAA+AGG | + | chr3_4:69305414-69305433 | None:intergenic | 25.0% |
| !!! | AAGATATTTTAATGCAATCG+CGG | - | chr3_4:69305786-69305805 | Msa0517610:intron | 25.0% |
| TAGTTAAATGTCCTAAATGC+CGG | - | chr3_4:69302934-69302953 | Msa0517610:CDS | 30.0% | |
| CTCTTGTAATAGTTTGACAT+TGG | - | chr3_4:69303148-69303167 | Msa0517610:CDS | 30.0% | |
| TACAGCTAAGAAACAAAGTT+TGG | - | chr3_4:69303473-69303492 | Msa0517610:CDS | 30.0% | |
| !! | TCAAGAGAGTGTTATTTAGA+TGG | - | chr3_4:69303642-69303661 | Msa0517610:CDS | 30.0% |
| !! | GAGTGTTATTTAGATGGAAA+TGG | - | chr3_4:69303648-69303667 | Msa0517610:CDS | 30.0% |
| TTCATTACAAAGACCAAAAG+AGG | - | chr3_4:69303842-69303861 | Msa0517610:CDS | 30.0% | |
| ! | GAACAAATTAAGTCCTCTTT+TGG | + | chr3_4:69303858-69303877 | None:intergenic | 30.0% |
| ATTTGTTCATCTGATGAAGA+TGG | - | chr3_4:69303870-69303889 | Msa0517610:CDS | 30.0% | |
| AATCCTGAAGTGGAAATTAT+TGG | - | chr3_4:69304050-69304069 | Msa0517610:CDS | 30.0% | |
| TTTCCAATAATTTCCACTTC+AGG | + | chr3_4:69304056-69304075 | None:intergenic | 30.0% | |
| ATTACTGGAAACAATATAGC+AGG | - | chr3_4:69304200-69304219 | Msa0517610:CDS | 30.0% | |
| ACTATGATCTCTTAATTCTG+TGG | + | chr3_4:69304396-69304415 | None:intergenic | 30.0% | |
| TCAAAGTTTAATGGTGTTCT+TGG | - | chr3_4:69304416-69304435 | Msa0517610:CDS | 30.0% | |
| !!! | ATGACATGGTTTTTTTCATG+TGG | + | chr3_4:69304602-69304621 | None:intergenic | 30.0% |
| !!! | TCATCAGTTTCATTTTTTCC+TGG | + | chr3_4:69304823-69304842 | None:intergenic | 30.0% |
| TATATGAGTGAGGAAACAAA+TGG | - | chr3_4:69304884-69304903 | Msa0517610:CDS | 30.0% | |
| TCCAACATGAAGATTTATAC+AGG | - | chr3_4:69305176-69305195 | Msa0517610:CDS | 30.0% | |
| ACCTGTATAAATCTTCATGT+TGG | + | chr3_4:69305180-69305199 | None:intergenic | 30.0% | |
| ! | AAACAGATTCTGATTTTCAG+AGG | - | chr3_4:69305248-69305267 | Msa0517610:CDS | 30.0% |
| CATTTATGACAAGTGACAAA+AGG | + | chr3_4:69305358-69305377 | None:intergenic | 30.0% | |
| TTATAAAGGAGAAAATCTGC+AGG | + | chr3_4:69305400-69305419 | None:intergenic | 30.0% | |
| ! | CTCAAGTTTTCATTGAAGAA+TGG | - | chr3_4:69305463-69305482 | Msa0517610:intron | 30.0% |
| !! | TAATATGAAATGGGTTTTGC+AGG | + | chr3_4:69305616-69305635 | None:intergenic | 30.0% |
| ! | TTTGTTGTGTAAGAGAAAGA+AGG | + | chr3_4:69305687-69305706 | None:intergenic | 30.0% |
| ACATATTTACCACCATTCAA+GGG | + | chr3_4:69305715-69305734 | None:intergenic | 30.0% | |
| AACATATTTACCACCATTCA+AGG | + | chr3_4:69305716-69305735 | None:intergenic | 30.0% | |
| !!! | TTATGAAGAGTACCTTTTTG+TGG | + | chr3_4:69305898-69305917 | None:intergenic | 30.0% |
| GTAAGGTGGTTACCAAAATT+CGG | - | chr3_4:69302910-69302929 | Msa0517610:CDS | 35.0% | |
| TTGTACACAGAATATCCTTG+AGG | + | chr3_4:69302975-69302994 | None:intergenic | 35.0% | |
| ACAGAATACATGACATTGGT+TGG | + | chr3_4:69303211-69303230 | None:intergenic | 35.0% | |
| GTAAATGTTGTTGGACAACA+TGG | + | chr3_4:69303316-69303335 | None:intergenic | 35.0% | |
| !! | TGCATTGATTTCTTGCATAC+TGG | + | chr3_4:69303514-69303533 | None:intergenic | 35.0% |
| GCATATTGATAGAAAACGTC+AGG | - | chr3_4:69303575-69303594 | Msa0517610:CDS | 35.0% | |
| TCTTCATCTGTGAACTTGAA+TGG | + | chr3_4:69303699-69303718 | None:intergenic | 35.0% | |
| TACCTAAATTGTCACTCAGA+AGG | - | chr3_4:69303742-69303761 | Msa0517610:CDS | 35.0% | |
| TCACAGTGAGTGATGTTATT+TGG | + | chr3_4:69303792-69303811 | None:intergenic | 35.0% | |
| ! | TATGACAAATCAGCTCTGAT+AGG | - | chr3_4:69303897-69303916 | Msa0517610:CDS | 35.0% |
| ! | ATGACAAATCAGCTCTGATA+GGG | - | chr3_4:69303898-69303917 | Msa0517610:CDS | 35.0% |
| GTTTCAGTGATTTCCATTTC+AGG | + | chr3_4:69303930-69303949 | None:intergenic | 35.0% | |
| ! | TGTAACTGGCTTCTCTTTAT+TGG | + | chr3_4:69304021-69304040 | None:intergenic | 35.0% |
| GGAGTAGAAGACTTGAATAA+TGG | - | chr3_4:69304086-69304105 | Msa0517610:CDS | 35.0% | |
| CCAGAATTAAAATCCTCTAG+TGG | + | chr3_4:69304119-69304138 | None:intergenic | 35.0% | |
| !!! | CCACTAGAGGATTTTAATTC+TGG | - | chr3_4:69304116-69304135 | Msa0517610:CDS | 35.0% |
| ! | TGGAGCTGATTTATCACTAT+TGG | + | chr3_4:69304156-69304175 | None:intergenic | 35.0% |
| ! | ATAGCTGATTGGTCATTGTT+AGG | + | chr3_4:69304290-69304309 | None:intergenic | 35.0% |
| AAATGCAAGCAATGAGATTG+TGG | - | chr3_4:69304358-69304377 | Msa0517610:CDS | 35.0% | |
| TGTGATATATGAGCTTCTTG+TGG | + | chr3_4:69304468-69304487 | None:intergenic | 35.0% | |
| ACAAGAAGCTCATATATCAC+AGG | - | chr3_4:69304467-69304486 | Msa0517610:CDS | 35.0% | |
| CTTGATCACTCTAGATGTAT+CGG | - | chr3_4:69305001-69305020 | Msa0517610:CDS | 35.0% | |
| TGTATCGGAAGATGTAATCA+TGG | - | chr3_4:69305016-69305035 | Msa0517610:CDS | 35.0% | |
| GGTAACAAGAATGATCTACA+TGG | + | chr3_4:69305111-69305130 | None:intergenic | 35.0% | |
| !! | ATTCTGATTTTCAGAGGCAT+AGG | - | chr3_4:69305254-69305273 | Msa0517610:CDS | 35.0% |
| !! | TTCTGATTTTCAGAGGCATA+GGG | - | chr3_4:69305255-69305274 | Msa0517610:CDS | 35.0% |
| TGTGGTGAGGAAATACTTAA+GGG | - | chr3_4:69305282-69305301 | Msa0517610:CDS | 35.0% | |
| CTTAAGGGACAAACATAACT+TGG | - | chr3_4:69305297-69305316 | Msa0517610:CDS | 35.0% | |
| GAAATGTGGTAAATGTTCAG+AGG | - | chr3_4:69305438-69305457 | Msa0517610:intron | 35.0% | |
| CCTATAGTATTCGATGAGAA+AGG | + | chr3_4:69305502-69305521 | None:intergenic | 35.0% | |
| CCTTTCTCATCGAATACTAT+AGG | - | chr3_4:69305499-69305518 | Msa0517610:intron | 35.0% | |
| TAGTTGACATGAGATACTGA+TGG | + | chr3_4:69305580-69305599 | None:intergenic | 35.0% | |
| CAACAAATTCATCCCTTGAA+TGG | - | chr3_4:69305700-69305719 | Msa0517610:intron | 35.0% | |
| AGGTACTCTTCATAAACTCA+TGG | - | chr3_4:69305903-69305922 | Msa0517610:CDS | 35.0% | |
| GGTACTCTTCATAAACTCAT+GGG | - | chr3_4:69305904-69305923 | Msa0517610:CDS | 35.0% | |
| ACACCAAGTAAAGTGATAAG+AGG | - | chr3_4:69305934-69305953 | Msa0517610:CDS | 35.0% | |
| CACCAAGTAAAGTGATAAGA+GGG | - | chr3_4:69305935-69305954 | Msa0517610:CDS | 35.0% | |
| ACCAAGTAAAGTGATAAGAG+GGG | - | chr3_4:69305936-69305955 | Msa0517610:CDS | 35.0% | |
| GGATATTCTGTGTACAAGTG+TGG | - | chr3_4:69302978-69302997 | Msa0517610:CDS | 40.0% | |
| TATTCTGTGTACAAGTGTGG+TGG | - | chr3_4:69302981-69303000 | Msa0517610:CDS | 40.0% | |
| CAGTGATTCAGAACAGAAAG+AGG | + | chr3_4:69303428-69303447 | None:intergenic | 40.0% | |
| TCCTCGGAAAGATAGTTTGA+AGG | - | chr3_4:69303602-69303621 | Msa0517610:CDS | 40.0% | |
| GATGGAAATGGTGAGTACAA+TGG | - | chr3_4:69303660-69303679 | Msa0517610:CDS | 40.0% | |
| GTTCACAGATGAAGAAGAAC+TGG | - | chr3_4:69303704-69303723 | Msa0517610:CDS | 40.0% | |
| AGAAGAACTGGAAAGTGAGT+TGG | - | chr3_4:69303716-69303735 | Msa0517610:CDS | 40.0% | |
| TGCCTTCTGAGTGACAATTT+AGG | + | chr3_4:69303747-69303766 | None:intergenic | 40.0% | |
| GTTATTTGGACCACCTTTGT+TGG | + | chr3_4:69303778-69303797 | None:intergenic | 40.0% | |
| ! | TGACAAATCAGCTCTGATAG+GGG | - | chr3_4:69303899-69303918 | Msa0517610:CDS | 40.0% |
| !! | TTTTGGAAACTTGTCGCTAG+AGG | - | chr3_4:69303953-69303972 | Msa0517610:CDS | 40.0% |
| TTTGGAAACTTGTCGCTAGA+GGG | - | chr3_4:69303954-69303973 | Msa0517610:CDS | 40.0% | |
| AAAGAGAAGCCAGTTACAGA+AGG | - | chr3_4:69304023-69304042 | Msa0517610:CDS | 40.0% | |
| TAATGGCAATTTGCCACTAG+AGG | - | chr3_4:69304103-69304122 | Msa0517610:CDS | 40.0% | |
| AGTGATAAATCAGCTCCAGT+TGG | - | chr3_4:69304158-69304177 | Msa0517610:CDS | 40.0% | |
| AACCTTGAAGGGGAAATTAC+TGG | - | chr3_4:69304185-69304204 | Msa0517610:CDS | 40.0% | |
| TTCCAGTAATTTCCCCTTCA+AGG | + | chr3_4:69304190-69304209 | None:intergenic | 40.0% | |
| CAATGACCAATCAGCTATAG+AGG | - | chr3_4:69304292-69304311 | Msa0517610:CDS | 40.0% | |
| TGGTATCCTCTATAGCTGAT+TGG | + | chr3_4:69304301-69304320 | None:intergenic | 40.0% | |
| AGAGGATACCAAATCTGAAG+TGG | - | chr3_4:69304310-69304329 | Msa0517610:CDS | 40.0% | |
| TGTTGTGTCCACTTCAGATT+TGG | + | chr3_4:69304321-69304340 | None:intergenic | 40.0% | |
| ATATGAGCTTCTTGTGGTTG+AGG | + | chr3_4:69304462-69304481 | None:intergenic | 40.0% | |
| GGAATGACCAGAAAAGGTAA+AGG | - | chr3_4:69304521-69304540 | Msa0517610:CDS | 40.0% | |
| TTGCTAATAGCTCCTCGTAT+GGG | - | chr3_4:69304546-69304565 | Msa0517610:CDS | 40.0% | |
| GTGTTGGACAATACACAACA+TGG | - | chr3_4:69304650-69304669 | Msa0517610:CDS | 40.0% | |
| CACAACATGGTAATTCACGT+TGG | - | chr3_4:69304663-69304682 | Msa0517610:CDS | 40.0% | |
| CTTTCATAGCCTGATCTGTA+AGG | + | chr3_4:69304728-69304747 | None:intergenic | 40.0% | |
| TACAGATCAGGCTATGAAAG+TGG | - | chr3_4:69304728-69304747 | Msa0517610:CDS | 40.0% | |
| TCATCATGCACTCCATTTGA+TGG | + | chr3_4:69304758-69304777 | None:intergenic | 40.0% | |
| ATCAAATGGAGTGCATGATG+AGG | - | chr3_4:69304757-69304776 | Msa0517610:CDS | 40.0% | |
| TCAAATGGAGTGCATGATGA+GGG | - | chr3_4:69304758-69304777 | Msa0517610:CDS | 40.0% | |
| !!! | GAGAATGGTTTTGAAGTTGC+AGG | - | chr3_4:69304841-69304860 | Msa0517610:CDS | 40.0% |
| ACAAATGGAAGAGTTTCTGC+TGG | - | chr3_4:69304899-69304918 | Msa0517610:CDS | 40.0% | |
| TTCTGCTGGTGTATCTTACA+AGG | - | chr3_4:69304913-69304932 | Msa0517610:CDS | 40.0% | |
| TCTGCTGGTGTATCTTACAA+GGG | - | chr3_4:69304914-69304933 | Msa0517610:CDS | 40.0% | |
| !! | GGTATTGGTATGCAGAACTA+CGG | + | chr3_4:69304943-69304962 | None:intergenic | 40.0% |
| ! | CTTGTTGCTTCAGCTGAATA+AGG | + | chr3_4:69305079-69305098 | None:intergenic | 40.0% |
| AGAAGAATCTGCTAAGACAC+GGG | + | chr3_4:69305143-69305162 | None:intergenic | 40.0% | |
| GAGAAGAATCTGCTAAGACA+CGG | + | chr3_4:69305144-69305163 | None:intergenic | 40.0% | |
| TCATGTTGGAAATGAACACG+TGG | + | chr3_4:69305166-69305185 | None:intergenic | 40.0% | |
| ! | GCAACAATTTTGCACTGGAT+AGG | + | chr3_4:69305203-69305222 | None:intergenic | 40.0% |
| ! | GAAGAGCAACAATTTTGCAC+TGG | + | chr3_4:69305208-69305227 | None:intergenic | 40.0% |
| !! | TCTGTTTCACTGAAGCATTG+TGG | + | chr3_4:69305235-69305254 | None:intergenic | 40.0% |
| CTGTGGTGAGGAAATACTTA+AGG | - | chr3_4:69305281-69305300 | Msa0517610:CDS | 40.0% | |
| GTATGTCACAAGCTGAAATG+TGG | - | chr3_4:69305424-69305443 | Msa0517610:intron | 40.0% | |
| CAAATTCATCCCTTGAATGG+TGG | - | chr3_4:69305703-69305722 | Msa0517610:intron | 40.0% | |
| TTGAGCTAGGAGAGACATTT+GGG | + | chr3_4:69305741-69305760 | None:intergenic | 40.0% | |
| TTTGCCTTGAATGTTGAGCT+AGG | + | chr3_4:69305754-69305773 | None:intergenic | 40.0% | |
| ! | GTTGATTCATCTGTATCCGT+TGG | + | chr3_4:69305814-69305833 | None:intergenic | 40.0% |
| ACGGATACAGATGAATCAAC+TGG | - | chr3_4:69305814-69305833 | Msa0517610:intron | 40.0% | |
| TTTCCTGGTTTCAGACATAC+TGG | + | chr3_4:69305848-69305867 | None:intergenic | 40.0% | |
| ! | CTTTTCTGCTGACAATTTCC+TGG | + | chr3_4:69305863-69305882 | None:intergenic | 40.0% |
| CAGGAAATTGTCAGCAGAAA+AGG | - | chr3_4:69305861-69305880 | Msa0517610:CDS | 40.0% | |
| GAAATTGTCAGCAGAAAAGG+AGG | - | chr3_4:69305864-69305883 | Msa0517610:CDS | 40.0% | |
| !!! | TGAAGAGTACCTTTTTGTGG+AGG | + | chr3_4:69305895-69305914 | None:intergenic | 40.0% |
| ACAGAATATCCTTGAGGCTC+TGG | + | chr3_4:69302969-69302988 | None:intergenic | 45.0% | |
| CAAGAAATCAATGCAGCTCC+TGG | - | chr3_4:69303519-69303538 | Msa0517610:CDS | 45.0% | |
| ! | ACAAGATCCGATGCTTTTCC+AGG | + | chr3_4:69303540-69303559 | None:intergenic | 45.0% |
| !!! | GCATCGGATCTTGTTTTTGC+AGG | - | chr3_4:69303546-69303565 | Msa0517610:CDS | 45.0% |
| GAAAACGTCAGGTTCTTCCT+CGG | - | chr3_4:69303586-69303605 | Msa0517610:CDS | 45.0% | |
| GCCTTCAAACTATCTTTCCG+AGG | + | chr3_4:69303606-69303625 | None:intergenic | 45.0% | |
| GGAAATGGTGAGTACAATGG+CGG | - | chr3_4:69303663-69303682 | Msa0517610:CDS | 45.0% | |
| ! | AGGCATAGAGTGTCCAACAA+AGG | - | chr3_4:69303762-69303781 | Msa0517610:CDS | 45.0% |
| ! | CATAGAGTGTCCAACAAAGG+TGG | - | chr3_4:69303765-69303784 | Msa0517610:CDS | 45.0% |
| CATCACTCACTGTGAGATTG+AGG | - | chr3_4:69303797-69303816 | Msa0517610:CDS | 45.0% | |
| GGATTTGCACCTTCTGTAAC+TGG | + | chr3_4:69304035-69304054 | None:intergenic | 45.0% | |
| ! | AGAAGGTGCAAATCCTGAAG+TGG | - | chr3_4:69304040-69304059 | Msa0517610:CDS | 45.0% |
| ! | CAGTTGGTACGAACCTTGAA+GGG | - | chr3_4:69304174-69304193 | Msa0517610:CDS | 45.0% |
| ! | AGTTGGTACGAACCTTGAAG+GGG | - | chr3_4:69304175-69304194 | Msa0517610:CDS | 45.0% |
| TAATGGAAAGTGGCCACAAG+AGG | - | chr3_4:69304235-69304254 | Msa0517610:CDS | 45.0% | |
| AATGGAAAGTGGCCACAAGA+GGG | - | chr3_4:69304236-69304255 | Msa0517610:CDS | 45.0% | |
| ! | TCTGAAGTGGACACAACAGA+AGG | - | chr3_4:69304323-69304342 | Msa0517610:CDS | 45.0% |
| AATGCTTACACCGTTGCTGA+AGG | - | chr3_4:69304500-69304519 | Msa0517610:CDS | 45.0% | |
| TCTGGTCATTCCTTCAGCAA+CGG | + | chr3_4:69304513-69304532 | None:intergenic | 45.0% | |
| GCTGAAGGAATGACCAGAAA+AGG | - | chr3_4:69304515-69304534 | Msa0517610:CDS | 45.0% | |
| ! | AGCAAGGCCTTTACCTTTTC+TGG | + | chr3_4:69304531-69304550 | None:intergenic | 45.0% |
| CATACGAGGAGCTATTAGCA+AGG | + | chr3_4:69304547-69304566 | None:intergenic | 45.0% | |
| CTTGCTAATAGCTCCTCGTA+TGG | - | chr3_4:69304545-69304564 | Msa0517610:CDS | 45.0% | |
| TGCTAATAGCTCCTCGTATG+GGG | - | chr3_4:69304547-69304566 | Msa0517610:CDS | 45.0% | |
| CTGTGCTGTCTTTCATGACA+TGG | + | chr3_4:69304616-69304635 | None:intergenic | 45.0% | |
| ! | GATCTGTAAGGCATTCTCGA+TGG | + | chr3_4:69304716-69304735 | None:intergenic | 45.0% |
| TCGAGAATGCCTTACAGATC+AGG | - | chr3_4:69304716-69304735 | Msa0517610:CDS | 45.0% | |
| CAAGACTCGCTATATGAGTG+AGG | - | chr3_4:69304874-69304893 | Msa0517610:CDS | 45.0% | |
| CTGCTGGTGTATCTTACAAG+GGG | - | chr3_4:69304915-69304934 | Msa0517610:CDS | 45.0% | |
| GAAGGTCATGGCTATGGTAT+TGG | + | chr3_4:69304958-69304977 | None:intergenic | 45.0% | |
| CATAGCCATGACCTTCATGA+GGG | - | chr3_4:69304962-69304981 | Msa0517610:CDS | 45.0% | |
| GAGAAAACCTTCCCTCATGA+AGG | + | chr3_4:69304976-69304995 | None:intergenic | 45.0% | |
| CTAAGACACGGGAACAACAA+TGG | + | chr3_4:69305132-69305151 | None:intergenic | 45.0% | |
| ! | TGGGTTTTGCAGGTGAATAC+TGG | + | chr3_4:69305606-69305625 | None:intergenic | 45.0% |
| GTTGAGCTAGGAGAGACATT+TGG | + | chr3_4:69305742-69305761 | None:intergenic | 45.0% | |
| CTCTCCTAGCTCAACATTCA+AGG | - | chr3_4:69305747-69305766 | Msa0517610:intron | 45.0% | |
| GAGGTAAAGCCTCCACAAAA+AGG | - | chr3_4:69305883-69305902 | Msa0517610:CDS | 45.0% | |
| GCCCCTCTTATCACTTTACT+TGG | + | chr3_4:69305940-69305959 | None:intergenic | 45.0% | |
| GGAAGAAGTTGCCGGCATTT+AGG | + | chr3_4:69302948-69302967 | None:intergenic | 50.0% | |
| CAACTTCTTCCAGAGCCTCA+AGG | - | chr3_4:69302957-69302976 | Msa0517610:CDS | 50.0% | |
| !! | GTGTACAAGTGTGGTGGATG+TGG | - | chr3_4:69302987-69303006 | Msa0517610:CDS | 50.0% |
| ! | TGCAGCTCCTGGAAAAGCAT+CGG | - | chr3_4:69303530-69303549 | Msa0517610:CDS | 50.0% |
| GATAGGGGACAGACCTGAAA+TGG | - | chr3_4:69303914-69303933 | Msa0517610:CDS | 50.0% | |
| !! | GCAGATGCGGTGTTGATTTC+TGG | - | chr3_4:69303978-69303997 | Msa0517610:CDS | 50.0% |
| CCTTCAAGGTTCGTACCAAC+TGG | + | chr3_4:69304176-69304195 | None:intergenic | 50.0% | |
| ! | CCAGTTGGTACGAACCTTGA+AGG | - | chr3_4:69304173-69304192 | Msa0517610:CDS | 50.0% |
| TGTTCCAAGATCCCCATACG+AGG | + | chr3_4:69304561-69304580 | None:intergenic | 50.0% | |
| GATCAGGCTATGAAAGTGGC+AGG | - | chr3_4:69304732-69304751 | Msa0517610:CDS | 50.0% | |
| GAAAGTGGCAGGCCATCAAA+TGG | - | chr3_4:69304743-69304762 | Msa0517610:CDS | 50.0% | |
| CCTCATGAAGGTCATGGCTA+TGG | + | chr3_4:69304964-69304983 | None:intergenic | 50.0% | |
| CCATAGCCATGACCTTCATG+AGG | - | chr3_4:69304961-69304980 | Msa0517610:CDS | 50.0% | |
| ACCTTCCCTCATGAAGGTCA+TGG | + | chr3_4:69304970-69304989 | None:intergenic | 50.0% | |
| CGAGTACTTATGCCTTTGGC+GGG | + | chr3_4:69305050-69305069 | None:intergenic | 50.0% | |
| GCGAGTACTTATGCCTTTGG+CGG | + | chr3_4:69305051-69305070 | None:intergenic | 50.0% | |
| ! | GCCAAAGGCATAAGTACTCG+CGG | - | chr3_4:69305050-69305069 | Msa0517610:CDS | 50.0% |
| TCCGCGAGTACTTATGCCTT+TGG | + | chr3_4:69305054-69305073 | None:intergenic | 50.0% | |
| TAAGCGACATCACAAGCCAG+TGG | - | chr3_4:69305321-69305340 | Msa0517610:CDS | 50.0% | |
| AATCTGCAGGTAGCTGAAGC+AGG | + | chr3_4:69305387-69305406 | None:intergenic | 50.0% | |
| CACTAACCACCTCGCTTCTA+CGG | + | chr3_4:69305546-69305565 | None:intergenic | 50.0% | |
| TAATGCAATCGCGGCTCCAA+CGG | - | chr3_4:69305795-69305814 | Msa0517610:intron | 50.0% | |
| CCTGGTTTCAGACATACTGG+AGG | + | chr3_4:69305845-69305864 | None:intergenic | 50.0% | |
| ! | CCTCCAGTATGTCTGAAACC+AGG | - | chr3_4:69305842-69305861 | Msa0517610:intron | 50.0% |
| !! | GAGGCTCTGGAAGAAGTTGC+CGG | + | chr3_4:69302956-69302975 | None:intergenic | 55.0% |
| !! | GGATGTGGCACTGACCTTCA+AGG | - | chr3_4:69303002-69303021 | Msa0517610:CDS | 55.0% |
| AAGTGGCCACAAGAGGGAGA+AGG | - | chr3_4:69304242-69304261 | Msa0517610:CDS | 55.0% | |
| TCCTCTCCTTCTCCCTCTTG+TGG | + | chr3_4:69304251-69304270 | None:intergenic | 55.0% | |
| AGCTCCTCGTATGGGGATCT+TGG | - | chr3_4:69304554-69304573 | Msa0517610:CDS | 55.0% | |
| TCTTTCACACGACTCGCGTG+AGG | - | chr3_4:69304790-69304809 | Msa0517610:CDS | 55.0% | |
| GCCATGACCTTCATGAGGGA+AGG | - | chr3_4:69304966-69304985 | Msa0517610:CDS | 55.0% | |
| ATGGAATTGCGTCCCGCCAA+AGG | - | chr3_4:69305035-69305054 | Msa0517610:CDS | 55.0% | |
| ! | TCAGAGGCATAGGGCTACTG+TGG | - | chr3_4:69305264-69305283 | Msa0517610:CDS | 55.0% |
| CTACGGTGAAGCTCACGAGA+TGG | + | chr3_4:69305529-69305548 | None:intergenic | 55.0% | |
| TGAGCTTCACCGTAGAAGCG+AGG | - | chr3_4:69305534-69305553 | Msa0517610:intron | 55.0% | |
| CGTAGAAGCGAGGTGGTTAG+TGG | - | chr3_4:69305544-69305563 | Msa0517610:intron | 55.0% | |
| GTCGCTAGAGGGAGCAGATG+CGG | - | chr3_4:69303965-69303984 | Msa0517610:CDS | 60.0% | |
| GCCACAAGAGGGAGAAGGAG+AGG | - | chr3_4:69304247-69304266 | Msa0517610:CDS | 60.0% | |
| GGCATAGGGCTACTGTGGTG+AGG | - | chr3_4:69305269-69305288 | Msa0517610:CDS | 60.0% | |
| CGACATCACAAGCCAGTGGC+AGG | - | chr3_4:69305325-69305344 | Msa0517610:CDS | 60.0% | |
| CATCACAAGCCAGTGGCAGG+TGG | - | chr3_4:69305328-69305347 | Msa0517610:CDS | 60.0% | |
| AAAGGAGCTCCACCTGCCAC+TGG | + | chr3_4:69305340-69305359 | None:intergenic | 60.0% | |
| GCTTCACCGTAGAAGCGAGG+TGG | - | chr3_4:69305537-69305556 | Msa0517610:intron | 60.0% | |
| CTCGCGTGAGGACACTGACC+AGG | - | chr3_4:69304802-69304821 | Msa0517610:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 69302903 | 69305969 | 69302903 | ID=Msa0517610;Name=Msa0517610 |
| chr3_4 | mRNA | 69302903 | 69305969 | 69302903 | ID=Msa0517610-mRNA-1;Parent=Msa0517610;Name=Msa0517610-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|870 |
| chr3_4 | exon | 69305849 | 69305969 | 69305849 | ID=Msa0517610-mRNA-1:exon:18468;Parent=Msa0517610-mRNA-1 |
| chr3_4 | exon | 69302903 | 69305394 | 69302903 | ID=Msa0517610-mRNA-1:exon:18467;Parent=Msa0517610-mRNA-1 |
| chr3_4 | CDS | 69305849 | 69305969 | 69305849 | ID=Msa0517610-mRNA-1:cds;Parent=Msa0517610-mRNA-1 |
| chr3_4 | CDS | 69302903 | 69305394 | 69302903 | ID=Msa0517610-mRNA-1:cds;Parent=Msa0517610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
