Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426560 | XP_013461490.1 | 94.834 | 871 | 44 | 1 | 1 | 870 | 1 | 871 | 0.0 | 1687 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426560 | sp|Q9FHK4|EDR4_ARATH | 47.826 | 92 | 43 | 1 | 635 | 721 | 461 | 552 | 3.53e-20 | 99.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426560 | A0A072VBG6 | 94.834 | 871 | 44 | 1 | 1 | 870 | 1 | 871 | 0.0 | 1687 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa0426560 | 0.864402 | 1.248025e-64 | -8.615850e-47 |
| Msa0011050 | Msa0426560 | 0.817744 | 2.813351e-52 | -8.615850e-47 |
| Msa0013280 | Msa0426560 | 0.859374 | 4.322978e-63 | -8.615850e-47 |
| Msa0023060 | Msa0426560 | 0.803738 | 3.020388e-49 | -8.615850e-47 |
| Msa0048390 | Msa0426560 | 0.814376 | 1.590030e-51 | -8.615850e-47 |
| Msa0060070 | Msa0426560 | 0.812511 | 4.086686e-51 | -8.615850e-47 |
| Msa0062180 | Msa0426560 | 0.826149 | 3.177665e-54 | -8.615850e-47 |
| Msa0064140 | Msa0426560 | 0.843183 | 1.639138e-58 | -8.615850e-47 |
| Msa0071480 | Msa0426560 | 0.800320 | 1.523443e-48 | -8.615850e-47 |
| Msa0081620 | Msa0426560 | 0.803812 | 2.915371e-49 | -8.615850e-47 |
| Msa0086560 | Msa0426560 | 0.820362 | 7.141754e-53 | -8.615850e-47 |
| Msa0092410 | Msa0426560 | 0.812935 | 3.301045e-51 | -8.615850e-47 |
| Msa0106530 | Msa0426560 | 0.880724 | 4.335136e-70 | -8.615850e-47 |
| Msa0119440 | Msa0426560 | 0.825814 | 3.817684e-54 | -8.615850e-47 |
| Msa0136630 | Msa0426560 | 0.814145 | 1.788057e-51 | -8.615850e-47 |
| Msa0151220 | Msa0426560 | 0.835480 | 1.637787e-56 | -8.615850e-47 |
| Msa0155210 | Msa0426560 | 0.822727 | 2.029248e-53 | -8.615850e-47 |
| Msa0162690 | Msa0426560 | 0.849292 | 3.551089e-60 | -8.615850e-47 |
| Msa0173960 | Msa0426560 | 0.801907 | 7.216049e-49 | -8.615850e-47 |
| Msa0187310 | Msa0426560 | 0.833843 | 4.224961e-56 | -8.615850e-47 |
| Msa0187830 | Msa0426560 | 0.816576 | 5.150817e-52 | -8.615850e-47 |
| Msa0189610 | Msa0426560 | 0.809312 | 2.013351e-50 | -8.615850e-47 |
| Msa0194010 | Msa0426560 | 0.811006 | 8.685342e-51 | -8.615850e-47 |
| Msa0201570 | Msa0426560 | 0.843535 | 1.319915e-58 | -8.615850e-47 |
| Msa0224130 | Msa0426560 | 0.804754 | 1.855668e-49 | -8.615850e-47 |
| Msa0235880 | Msa0426560 | 0.812078 | 5.079894e-51 | -8.615850e-47 |
| Msa0364790 | Msa0426560 | 0.839914 | 1.191177e-57 | -8.615850e-47 |
| Msa0372460 | Msa0426560 | 0.812482 | 4.145753e-51 | -8.615850e-47 |
| Msa0377840 | Msa0426560 | 0.975754 | 1.545990e-140 | -8.615850e-47 |
| Msa0380600 | Msa0426560 | 0.816371 | 5.723456e-52 | -8.615850e-47 |
| Msa0408340 | Msa0426560 | 0.833181 | 6.179699e-56 | -8.615850e-47 |
| Msa0412260 | Msa0426560 | 0.816768 | 4.664663e-52 | -8.615850e-47 |
| Msa0426560 | Msa0430240 | 0.810002 | 1.431289e-50 | -8.615850e-47 |
| Msa0426560 | Msa0456770 | 0.821322 | 4.293314e-53 | -8.615850e-47 |
| Msa0426560 | Msa0473140 | 0.970636 | 6.409988e-132 | -8.615850e-47 |
| Msa0426560 | Msa0484800 | 0.806609 | 7.569273e-50 | -8.615850e-47 |
| Msa0426560 | Msa0501410 | 0.825006 | 5.931915e-54 | -8.615850e-47 |
| Msa0426560 | Msa0512980 | 0.811011 | 8.663543e-51 | -8.615850e-47 |
| Msa0426560 | Msa0517610 | 0.985858 | 6.823638e-165 | -8.615850e-47 |
| Msa0426560 | Msa0524330 | 0.844794 | 6.061238e-59 | -8.615850e-47 |
| Msa0426560 | Msa0524440 | 0.864524 | 1.142862e-64 | -8.615850e-47 |
| Msa0426560 | Msa0558390 | 0.818623 | 1.780135e-52 | -8.615850e-47 |
| Msa0426560 | Msa0572560 | 0.814114 | 1.816331e-51 | -8.615850e-47 |
| Msa0426560 | Msa0574600 | 0.837504 | 4.998857e-57 | -8.615850e-47 |
| Msa0426560 | Msa0580920 | 0.832687 | 8.200043e-56 | -8.615850e-47 |
| Msa0426560 | Msa0588710 | 0.804949 | 1.689452e-49 | -8.615850e-47 |
| Msa0426560 | Msa0599150 | 0.803108 | 4.079899e-49 | -8.615850e-47 |
| Msa0426560 | Msa0613340 | 0.804201 | 2.419778e-49 | -8.615850e-47 |
| Msa0426560 | Msa0662580 | 0.802877 | 4.553175e-49 | -8.615850e-47 |
| Msa0426560 | Msa0696100 | 0.805798 | 1.121591e-49 | -8.615850e-47 |
| Msa0426560 | Msa0697570 | 0.825314 | 5.015135e-54 | -8.615850e-47 |
| Msa0426560 | Msa0697590 | 0.814952 | 1.185195e-51 | -8.615850e-47 |
| Msa0426560 | Msa0708310 | 0.833251 | 5.937417e-56 | -8.615850e-47 |
| Msa0426560 | Msa0772740 | 0.802060 | 6.711161e-49 | -8.615850e-47 |
| Msa0426560 | Msa0775920 | 0.803057 | 4.181184e-49 | -8.615850e-47 |
| Msa0426560 | Msa0807670 | 0.803657 | 3.140351e-49 | -8.615850e-47 |
| Msa0426560 | Msa0853810 | 0.801960 | 7.034770e-49 | -8.615850e-47 |
| Msa0426560 | Msa0860250 | 0.825615 | 4.255980e-54 | -8.615850e-47 |
| Msa0426560 | Msa0898320 | 0.807613 | 4.641457e-50 | -8.615850e-47 |
| Msa0426560 | Msa0968050 | 0.843132 | 1.690430e-58 | -8.615850e-47 |
| Msa0426560 | Msa0982780 | 0.814304 | 1.649653e-51 | -8.615850e-47 |
| Msa0426560 | Msa1043120 | 0.846110 | 2.668896e-59 | -8.615850e-47 |
| Msa0426560 | Msa1089190 | 0.807630 | 4.602650e-50 | -8.615850e-47 |
| Msa0426560 | Msa1109670 | 0.804475 | 2.122436e-49 | -8.615850e-47 |
| Msa0426560 | Msa1214170 | 0.834259 | 3.324119e-56 | -8.615850e-47 |
| Msa0426560 | Msa1225100 | 0.813465 | 2.524294e-51 | -8.615850e-47 |
| Msa0426560 | Msa1236440 | 0.800268 | 1.560763e-48 | -8.615850e-47 |
| Msa0426560 | Msa1238690 | 0.816240 | 6.123083e-52 | -8.615850e-47 |
| Msa0426560 | Msa1259860 | 0.807151 | 5.815179e-50 | -8.615850e-47 |
| Msa0426560 | Msa1260680 | 0.841366 | 4.963490e-58 | -8.615850e-47 |
| Msa0426560 | Msa1280150 | 0.833392 | 5.474585e-56 | -8.615850e-47 |
| Msa0426560 | Msa1285200 | 0.822617 | 2.152543e-53 | -8.615850e-47 |
| Msa0426560 | Msa1329870 | 0.812356 | 4.419047e-51 | -8.615850e-47 |
| Msa0426560 | Msa1338400 | 0.800126 | 1.668360e-48 | -8.615850e-47 |
| Msa0426560 | Msa1351260 | 0.801834 | 7.469159e-49 | -8.615850e-47 |
| Msa0426560 | Msa1353890 | 0.836962 | 6.879471e-57 | -8.615850e-47 |
| Msa0426560 | Msa1360020 | 0.833921 | 4.038610e-56 | -8.615850e-47 |
| Msa0426560 | Msa1364080 | 0.811166 | 8.018986e-51 | -8.615850e-47 |
| Msa0426560 | Msa1367530 | 0.865868 | 4.321511e-65 | -8.615850e-47 |
| Msa0426560 | Msa1376450 | 0.802830 | 4.657882e-49 | -8.615850e-47 |
| Msa0426560 | Msa1379580 | 0.814843 | 1.253397e-51 | -8.615850e-47 |
| Msa0426560 | Msa1389760 | 0.804398 | 2.202137e-49 | -8.615850e-47 |
| Msa0426560 | Msa1398900 | 0.801754 | 7.755143e-49 | -8.615850e-47 |
| Msa0426560 | Msa1405220 | 0.804848 | 1.773821e-49 | -8.615850e-47 |
| Msa0426560 | Msa1405820 | 0.856046 | 4.192159e-62 | -8.615850e-47 |
| Msa0426560 | Msa1408180 | 0.843759 | 1.149893e-58 | -8.615850e-47 |
| Msa0426560 | Msa1420920 | 0.802153 | 6.420260e-49 | -8.615850e-47 |
| Msa0426560 | Msa1420930 | 0.806670 | 7.349099e-50 | -8.615850e-47 |
| Msa0426560 | Msa1424580 | 0.830460 | 2.900150e-55 | -8.615850e-47 |
| Msa0426560 | Msa1424630 | 0.853628 | 2.106883e-61 | -8.615850e-47 |
| Msa0426560 | Msa1430550 | 0.825276 | 5.119419e-54 | -8.615850e-47 |
| Msa0426560 | Msa1448980 | 0.843553 | 1.305655e-58 | -8.615850e-47 |
| Msa0240270 | Msa0426560 | 0.805992 | 1.021206e-49 | -8.615850e-47 |
| Msa0259440 | Msa0426560 | 0.807318 | 5.359353e-50 | -8.615850e-47 |
| Msa0259580 | Msa0426560 | 0.800461 | 1.425651e-48 | -8.615850e-47 |
| Msa0260530 | Msa0426560 | 0.810841 | 9.430000e-51 | -8.615850e-47 |
| Msa0265270 | Msa0426560 | 0.803559 | 3.290278e-49 | -8.615850e-47 |
| Msa0277410 | Msa0426560 | 0.842666 | 2.249719e-58 | -8.615850e-47 |
| Msa0282720 | Msa0426560 | 0.832206 | 1.079005e-55 | -8.615850e-47 |
| Msa0305620 | Msa0426560 | 0.801317 | 9.534851e-49 | -8.615850e-47 |
| Msa0314000 | Msa0426560 | 0.815634 | 8.362480e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426560 | MtrunA17_Chr3g0128631 | 94.834 | 871 | 44 | 1 | 1 | 870 | 1 | 871 | 0.0 | 1687 |
| Msa0426560 | MtrunA17_Chr7g0268371 | 58.333 | 144 | 51 | 4 | 458 | 593 | 4 | 146 | 3.39e-40 | 145 |
| Msa0426560 | MtrunA17_Chr5g0428461 | 52.128 | 94 | 43 | 2 | 1 | 92 | 1 | 94 | 2.85e-17 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426560 | AT5G05190.1 | 47.826 | 92 | 43 | 1 | 635 | 721 | 461 | 552 | 3.58e-21 | 99.4 |
| Msa0426560 | AT3G56410.3 | 45.714 | 70 | 38 | 0 | 645 | 714 | 223 | 292 | 6.78e-13 | 73.6 |
| Msa0426560 | AT3G56410.1 | 45.714 | 70 | 38 | 0 | 645 | 714 | 312 | 381 | 8.37e-13 | 73.2 |
| Msa0426560 | AT3G56410.2 | 45.714 | 70 | 38 | 0 | 645 | 714 | 359 | 428 | 9.11e-13 | 73.2 |
Find 192 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCATATTATGATGATTA+TGG | 0.138733 | 3_2:+77003432 | Msa0426560:CDS |
| GCAGATGCGGTGTTGATTTC+TGG | 0.149630 | 3_2:+77001785 | Msa0426560:CDS |
| GAAATCACTGAAACTAATTT+TGG | 0.164374 | 3_2:+77001743 | Msa0426560:CDS |
| TGTAACTGGCTTCTCTTTAT+TGG | 0.169718 | 3_2:-77001825 | None:intergenic |
| ACATTTAACTATCCGAATTT+TGG | 0.174552 | 3_2:-77000729 | None:intergenic |
| TCACAGTGAGTGATGTTATT+TGG | 0.210386 | 3_2:-77001596 | None:intergenic |
| TCAAAGTTTAATGGTGTTCT+TGG | 0.238441 | 3_2:+77002223 | Msa0426560:CDS |
| GTTTCAGTGATTTCCATTTC+AGG | 0.261394 | 3_2:-77001734 | None:intergenic |
| GATCATAGTTCAAAGTTTAA+TGG | 0.262570 | 3_2:+77002214 | Msa0426560:CDS |
| GGAAGAAGTTGCCGGCATTT+AGG | 0.282712 | 3_2:-77000752 | None:intergenic |
| AATCCTGAAGTGGAAATTAT+TGG | 0.286338 | 3_2:+77001857 | Msa0426560:CDS |
| TCAAGAGAGTGTTATTTAGA+TGG | 0.287618 | 3_2:+77001449 | Msa0426560:CDS |
| GGATTTGCACCTTCTGTAAC+TGG | 0.294631 | 3_2:-77001839 | None:intergenic |
| GAACAAATTAAGTCCTCTTT+TGG | 0.307285 | 3_2:-77001662 | None:intergenic |
| TTCCAGTAATTTCCCCTTCA+AGG | 0.315354 | 3_2:-77001994 | None:intergenic |
| TTTCCAATAATTTCCACTTC+AGG | 0.322328 | 3_2:-77001860 | None:intergenic |
| TGCCTTCTGAGTGACAATTT+AGG | 0.324245 | 3_2:-77001551 | None:intergenic |
| TTTCATATTATGATGATTAT+GGG | 0.327417 | 3_2:+77003433 | Msa0426560:CDS |
| TGGAGCTGATTTATCACTAT+TGG | 0.334684 | 3_2:-77001960 | None:intergenic |
| TACAGCTAAGAAACAAAGTT+TGG | 0.337502 | 3_2:+77001280 | Msa0426560:intron |
| ATTATTGGAAATGATTTAGA+AGG | 0.342099 | 3_2:+77001872 | Msa0426560:CDS |
| ATTGAGGAGATAAGTAATAA+TGG | 0.344048 | 3_2:+77001620 | Msa0426560:CDS |
| ATAGCTGATTGGTCATTGTT+AGG | 0.346593 | 3_2:-77002094 | None:intergenic |
| TGCATTGATTTCTTGCATAC+TGG | 0.352905 | 3_2:-77001318 | None:intergenic |
| TGTTGTGTCCACTTCAGATT+TGG | 0.354447 | 3_2:-77002125 | None:intergenic |
| CTTGTTGCTTCAGCTGAATA+AGG | 0.358091 | 3_2:-77002883 | None:intergenic |
| AGCTCCTCGTATGGGGATCT+TGG | 0.360440 | 3_2:+77002361 | Msa0426560:CDS |
| GTTGAGCTAGGAGAGACATT+TGG | 0.361833 | 3_2:-77003546 | None:intergenic |
| TCATCATGCACTCCATTTGA+TGG | 0.364226 | 3_2:-77002562 | None:intergenic |
| AACCTTGAAGGGGAAATTAC+TGG | 0.369393 | 3_2:+77001992 | Msa0426560:CDS |
| TTGAGCTAGGAGAGACATTT+GGG | 0.377528 | 3_2:-77003545 | None:intergenic |
| TTCATTACAAAGACCAAAAG+AGG | 0.384209 | 3_2:+77001649 | Msa0426560:CDS |
| ATAATCATCATAATATGAAA+TGG | 0.389072 | 3_2:-77003430 | None:intergenic |
| CAGGAAATTGTCAGCAGAAA+AGG | 0.389892 | 3_2:+77003668 | Msa0426560:CDS |
| CCTTCAAGGTTCGTACCAAC+TGG | 0.397424 | 3_2:-77001980 | None:intergenic |
| TTTCCTGGTTTCAGACATAC+TGG | 0.398983 | 3_2:-77003652 | None:intergenic |
| CTGTGGTGAGGAAATACTTA+AGG | 0.400170 | 3_2:+77003088 | Msa0426560:CDS |
| GATAGGGGACAGACCTGAAA+TGG | 0.402925 | 3_2:+77001721 | Msa0426560:CDS |
| TATGACAAATCAGCTCTGAT+AGG | 0.403629 | 3_2:+77001704 | Msa0426560:CDS |
| CTCTCCTAGCTCAACATTCA+AGG | 0.405053 | 3_2:+77003554 | Msa0426560:CDS |
| TCTTCATCTGTGAACTTGAA+TGG | 0.406814 | 3_2:-77001503 | None:intergenic |
| GCCCCTCTTATCACTTTACT+TGG | 0.409919 | 3_2:-77003744 | None:intergenic |
| GTTCACAGATGAAGAAGAAC+TGG | 0.414179 | 3_2:+77001511 | Msa0426560:CDS |
| CTGTGCTGTCTTTCATGACA+TGG | 0.414712 | 3_2:-77002420 | None:intergenic |
| TCCAACATGAAGATTTATAC+AGG | 0.415572 | 3_2:+77002983 | Msa0426560:CDS |
| AACATATTTACCACCATTCA+AGG | 0.420023 | 3_2:-77003520 | None:intergenic |
| ACAGAATATCCTTGAGGCTC+TGG | 0.425857 | 3_2:-77000773 | None:intergenic |
| ATTTGTTCATCTGATGAAGA+TGG | 0.427120 | 3_2:+77001677 | Msa0426560:CDS |
| GTAAGGTGGTTACCAAAATT+CGG | 0.427969 | 3_2:+77000717 | Msa0426560:CDS |
| CAAGAAATCAATGCAGCTCC+TGG | 0.432286 | 3_2:+77001326 | Msa0426560:CDS |
| CCTTTCTCATCGAATACTAT+AGG | 0.433792 | 3_2:+77003306 | Msa0426560:CDS |
| GAGTGTTATTTAGATGGAAA+TGG | 0.434349 | 3_2:+77001455 | Msa0426560:CDS |
| TCGAGAATGCCTTACAGATC+AGG | 0.435054 | 3_2:+77002523 | Msa0426560:CDS |
| TCCGCGAGTACTTATGCCTT+TGG | 0.441596 | 3_2:-77002858 | None:intergenic |
| GGAGTAGAAGACTTGAATAA+TGG | 0.442556 | 3_2:+77001893 | Msa0426560:CDS |
| CCAGTTGGTACGAACCTTGA+AGG | 0.447258 | 3_2:+77001980 | Msa0426560:CDS |
| CTTAAGGGACAAACATAACT+TGG | 0.447454 | 3_2:+77003104 | Msa0426560:CDS |
| TCCTCGGAAAGATAGTTTGA+AGG | 0.454231 | 3_2:+77001409 | Msa0426560:CDS |
| GAAGGTCATGGCTATGGTAT+TGG | 0.459591 | 3_2:-77002762 | None:intergenic |
| CACTAACCACCTCGCTTCTA+CGG | 0.460505 | 3_2:-77003350 | None:intergenic |
| CGTAGAAGCGAGGTGGTTAG+TGG | 0.462545 | 3_2:+77003351 | Msa0426560:CDS |
| CAATGACCAATCAGCTATAG+AGG | 0.463430 | 3_2:+77002099 | Msa0426560:CDS |
| TATATTTGAAGGAATATGTC+TGG | 0.464306 | 3_2:+77000695 | None:intergenic |
| GAGGTAAAGCCTCCACAAAA+AGG | 0.465708 | 3_2:+77003690 | Msa0426560:CDS |
| ACGGATACAGATGAATCAAC+TGG | 0.473634 | 3_2:+77003621 | Msa0426560:CDS |
| CAACAAATTCATCCCTTGAA+TGG | 0.475924 | 3_2:+77003507 | Msa0426560:CDS |
| ATATGAGCTTCTTGTGGTTG+AGG | 0.478521 | 3_2:-77002266 | None:intergenic |
| TGGTATCCTCTATAGCTGAT+TGG | 0.481238 | 3_2:-77002105 | None:intergenic |
| ACACCAAGTAAAGTGATAAG+AGG | 0.482329 | 3_2:+77003741 | Msa0426560:CDS |
| TTGCTAATAGCTCCTCGTAT+GGG | 0.484351 | 3_2:+77002353 | Msa0426560:CDS |
| ATGACAAATCAGCTCTGATA+GGG | 0.484835 | 3_2:+77001705 | Msa0426560:CDS |
| CTTTCATAGCCTGATCTGTA+AGG | 0.485476 | 3_2:-77002532 | None:intergenic |
| TAATCATCATAATATGAAAT+GGG | 0.485762 | 3_2:-77003429 | None:intergenic |
| TGTGGTGAGGAAATACTTAA+GGG | 0.486354 | 3_2:+77003089 | Msa0426560:CDS |
| GTTATTTGGACCACCTTTGT+TGG | 0.486422 | 3_2:-77001582 | None:intergenic |
| CATCACTCACTGTGAGATTG+AGG | 0.490880 | 3_2:+77001604 | Msa0426560:CDS |
| TTCTGCTGGTGTATCTTACA+AGG | 0.491674 | 3_2:+77002720 | Msa0426560:CDS |
| GCTGAAGGAATGACCAGAAA+AGG | 0.496200 | 3_2:+77002322 | Msa0426560:CDS |
| AGAAGAACTGGAAAGTGAGT+TGG | 0.496772 | 3_2:+77001523 | Msa0426560:CDS |
| AGGTACTCTTCATAAACTCA+TGG | 0.498632 | 3_2:+77003710 | Msa0426560:CDS |
| TTTGTTGTGTAAGAGAAAGA+AGG | 0.499054 | 3_2:-77003491 | None:intergenic |
| TAAGAGGGGCATCTTGTTGA+AGG | 0.499268 | 3_2:+77003757 | Msa0426560:CDS |
| GAAAGTGGCAGGCCATCAAA+TGG | 0.507500 | 3_2:+77002550 | Msa0426560:CDS |
| GTGTACAAGTGTGGTGGATG+TGG | 0.512363 | 3_2:+77000794 | Msa0426560:CDS |
| GCATATTGATAGAAAACGTC+AGG | 0.513186 | 3_2:+77001382 | Msa0426560:CDS |
| AAGGAATATGTCTGGTAAGG+TGG | 0.515393 | 3_2:+77000703 | None:intergenic |
| CGACATCACAAGCCAGTGGC+AGG | 0.515436 | 3_2:+77003132 | Msa0426560:CDS |
| CTTGATCACTCTAGATGTAT+CGG | 0.516311 | 3_2:+77002808 | Msa0426560:CDS |
| GCCATGACCTTCATGAGGGA+AGG | 0.519968 | 3_2:+77002773 | Msa0426560:CDS |
| TCCTCTCCTTCTCCCTCTTG+TGG | 0.520199 | 3_2:-77002055 | None:intergenic |
| AATCTGCAGGTAGCTGAAGC+AGG | 0.520263 | 3_2:-77003191 | None:intergenic |
| CGAGTACTTATGCCTTTGGC+GGG | 0.521127 | 3_2:-77002854 | None:intergenic |
| GAGGCTCTGGAAGAAGTTGC+CGG | 0.525192 | 3_2:-77000760 | None:intergenic |
| ACCTGTATAAATCTTCATGT+TGG | 0.526192 | 3_2:-77002984 | None:intergenic |
| GTTGATTCATCTGTATCCGT+TGG | 0.526902 | 3_2:-77003618 | None:intergenic |
| TCTGGTCATTCCTTCAGCAA+CGG | 0.529453 | 3_2:-77002317 | None:intergenic |
| ATTACTGGAAACAATATAGC+AGG | 0.531297 | 3_2:+77002007 | Msa0426560:CDS |
| GGATGTGGCACTGACCTTCA+AGG | 0.532393 | 3_2:+77000809 | Msa0426560:CDS |
| TTTGGAAACTTGTCGCTAGA+GGG | 0.532723 | 3_2:+77001761 | Msa0426560:CDS |
| AAAGGAGCTCCACCTGCCAC+TGG | 0.533821 | 3_2:-77003144 | None:intergenic |
| CCTCATGAAGGTCATGGCTA+TGG | 0.534051 | 3_2:-77002768 | None:intergenic |
| TTTGCCTTGAATGTTGAGCT+AGG | 0.534758 | 3_2:-77003558 | None:intergenic |
| TAGTTAAATGTCCTAAATGC+CGG | 0.534878 | 3_2:+77000741 | Msa0426560:CDS |
| TAATGCAATCGCGGCTCCAA+CGG | 0.535239 | 3_2:+77003602 | Msa0426560:CDS |
| CCTATAGTATTCGATGAGAA+AGG | 0.535878 | 3_2:-77003306 | None:intergenic |
| TTGAAGGAATATGTCTGGTA+AGG | 0.536667 | 3_2:+77000700 | None:intergenic |
| CATTTATGACAAGTGACAAA+AGG | 0.537261 | 3_2:-77003162 | None:intergenic |
| CCTCCAGTATGTCTGAAACC+AGG | 0.539270 | 3_2:+77003649 | Msa0426560:CDS |
| CAGTTGGTACGAACCTTGAA+GGG | 0.541921 | 3_2:+77001981 | Msa0426560:CDS |
| CACCAAGTAAAGTGATAAGA+GGG | 0.542812 | 3_2:+77003742 | Msa0426560:CDS |
| AAATGCAAGCAATGAGATTG+TGG | 0.546365 | 3_2:+77002165 | Msa0426560:CDS |
| GATCAGGCTATGAAAGTGGC+AGG | 0.549263 | 3_2:+77002539 | Msa0426560:CDS |
| CTCGCGTGAGGACACTGACC+AGG | 0.551465 | 3_2:+77002609 | Msa0426560:CDS |
| GCGAGTACTTATGCCTTTGG+CGG | 0.552548 | 3_2:-77002855 | None:intergenic |
| TGCTAATAGCTCCTCGTATG+GGG | 0.553250 | 3_2:+77002354 | Msa0426560:CDS |
| CTTGCTAATAGCTCCTCGTA+TGG | 0.554567 | 3_2:+77002352 | Msa0426560:CDS |
| TGTATCGGAAGATGTAATCA+TGG | 0.555125 | 3_2:+77002823 | Msa0426560:CDS |
| GAGAAAACCTTCCCTCATGA+AGG | 0.564438 | 3_2:-77002780 | None:intergenic |
| GCCACAAGAGGGAGAAGGAG+AGG | 0.568068 | 3_2:+77002054 | Msa0426560:CDS |
| ATCAAATGGAGTGCATGATG+AGG | 0.568884 | 3_2:+77002564 | Msa0426560:CDS |
| ATGGAATTGCGTCCCGCCAA+AGG | 0.570672 | 3_2:+77002842 | Msa0426560:CDS |
| TAATGGCAATTTGCCACTAG+AGG | 0.571741 | 3_2:+77001910 | Msa0426560:CDS |
| CTGCTGGTGTATCTTACAAG+GGG | 0.572567 | 3_2:+77002722 | Msa0426560:CDS |
| TACAGATCAGGCTATGAAAG+TGG | 0.576466 | 3_2:+77002535 | Msa0426560:CDS |
| TGCAGCTCCTGGAAAAGCAT+CGG | 0.577154 | 3_2:+77001337 | Msa0426560:CDS |
| AAAGAGAAGCCAGTTACAGA+AGG | 0.579951 | 3_2:+77001830 | Msa0426560:CDS |
| ACAAATGGAAGAGTTTCTGC+TGG | 0.583470 | 3_2:+77002706 | Msa0426560:CDS |
| AGAGGATACCAAATCTGAAG+TGG | 0.584314 | 3_2:+77002117 | Msa0426560:CDS |
| CATCACAAGCCAGTGGCAGG+TGG | 0.586203 | 3_2:+77003135 | Msa0426560:CDS |
| ACATATTTACCACCATTCAA+GGG | 0.586967 | 3_2:-77003519 | None:intergenic |
| ACCTTCCCTCATGAAGGTCA+TGG | 0.587046 | 3_2:-77002774 | None:intergenic |
| GGTATTGGTATGCAGAACTA+CGG | 0.587389 | 3_2:-77002747 | None:intergenic |
| ACTATGATCTCTTAATTCTG+TGG | 0.588099 | 3_2:-77002200 | None:intergenic |
| GGTACTCTTCATAAACTCAT+GGG | 0.590389 | 3_2:+77003711 | Msa0426560:CDS |
| AAGTGGCCACAAGAGGGAGA+AGG | 0.591131 | 3_2:+77002049 | Msa0426560:CDS |
| TTATAAAGGAGAAAATCTGC+AGG | 0.591353 | 3_2:-77003204 | None:intergenic |
| TAATGGAAAGTGGCCACAAG+AGG | 0.592409 | 3_2:+77002042 | Msa0426560:CDS |
| GCCTTCAAACTATCTTTCCG+AGG | 0.593288 | 3_2:-77001410 | None:intergenic |
| GTCGCTAGAGGGAGCAGATG+CGG | 0.597570 | 3_2:+77001772 | Msa0426560:CDS |
| AATGCTTACACCGTTGCTGA+AGG | 0.598914 | 3_2:+77002307 | Msa0426560:CDS |
| TACCTAAATTGTCACTCAGA+AGG | 0.601587 | 3_2:+77001549 | Msa0426560:CDS |
| GGAATGACCAGAAAAGGTAA+AGG | 0.602415 | 3_2:+77002328 | Msa0426560:CDS |
| AGAAGGTGCAAATCCTGAAG+TGG | 0.603285 | 3_2:+77001847 | Msa0426560:CDS |
| TCTGCTGGTGTATCTTACAA+GGG | 0.604895 | 3_2:+77002721 | Msa0426560:CDS |
| CTACGGTGAAGCTCACGAGA+TGG | 0.605302 | 3_2:-77003333 | None:intergenic |
| TCAAATGGAGTGCATGATGA+GGG | 0.605561 | 3_2:+77002565 | Msa0426560:CDS |
| TATATGAGTGAGGAAACAAA+TGG | 0.606561 | 3_2:+77002691 | Msa0426560:CDS |
| CAAATTCATCCCTTGAATGG+TGG | 0.607888 | 3_2:+77003510 | Msa0426560:CDS |
| GATCTGTAAGGCATTCTCGA+TGG | 0.608638 | 3_2:-77002520 | None:intergenic |
| GAAAACGTCAGGTTCTTCCT+CGG | 0.608765 | 3_2:+77001393 | Msa0426560:CDS |
| CTAAGACACGGGAACAACAA+TGG | 0.613621 | 3_2:-77002936 | None:intergenic |
| CACAACATGGTAATTCACGT+TGG | 0.615905 | 3_2:+77002470 | Msa0426560:CDS |
| ACAAGAAGCTCATATATCAC+AGG | 0.619189 | 3_2:+77002274 | Msa0426560:CDS |
| TCTTTCACACGACTCGCGTG+AGG | 0.622099 | 3_2:+77002597 | Msa0426560:CDS |
| GAAATTGTCAGCAGAAAAGG+AGG | 0.624190 | 3_2:+77003671 | Msa0426560:CDS |
| TGTGATATATGAGCTTCTTG+TGG | 0.626127 | 3_2:-77002272 | None:intergenic |
| CCAGAATTAAAATCCTCTAG+TGG | 0.627898 | 3_2:-77001923 | None:intergenic |
| GGCATAGGGCTACTGTGGTG+AGG | 0.627962 | 3_2:+77003076 | Msa0426560:CDS |
| AGAAGAATCTGCTAAGACAC+GGG | 0.628845 | 3_2:-77002947 | None:intergenic |
| GTATGTCACAAGCTGAAATG+TGG | 0.632938 | 3_2:+77003231 | Msa0426560:CDS |
| AATGGAAAGTGGCCACAAGA+GGG | 0.635120 | 3_2:+77002043 | Msa0426560:CDS |
| CATAGAGTGTCCAACAAAGG+TGG | 0.635172 | 3_2:+77001572 | Msa0426560:CDS |
| TCTGTTTCACTGAAGCATTG+TGG | 0.635814 | 3_2:-77003039 | None:intergenic |
| GAGAAGAATCTGCTAAGACA+CGG | 0.636353 | 3_2:-77002948 | None:intergenic |
| TCAGAGGCATAGGGCTACTG+TGG | 0.638205 | 3_2:+77003071 | Msa0426560:CDS |
| TGACAAATCAGCTCTGATAG+GGG | 0.640991 | 3_2:+77001706 | Msa0426560:CDS |
| GAAATGTGGTAAATGTTCAG+AGG | 0.642119 | 3_2:+77003245 | Msa0426560:CDS |
| TCTGAAGTGGACACAACAGA+AGG | 0.642126 | 3_2:+77002130 | Msa0426560:CDS |
| GATGGAAATGGTGAGTACAA+TGG | 0.642186 | 3_2:+77001467 | Msa0426560:CDS |
| CAACTTCTTCCAGAGCCTCA+AGG | 0.642945 | 3_2:+77000764 | Msa0426560:CDS |
| CCTGGTTTCAGACATACTGG+AGG | 0.645462 | 3_2:-77003649 | None:intergenic |
| CCATAGCCATGACCTTCATG+AGG | 0.648193 | 3_2:+77002768 | Msa0426560:CDS |
| AGTGATAAATCAGCTCCAGT+TGG | 0.651091 | 3_2:+77001965 | Msa0426560:CDS |
| AGGCATAGAGTGTCCAACAA+AGG | 0.653537 | 3_2:+77001569 | Msa0426560:CDS |
| CAAGACTCGCTATATGAGTG+AGG | 0.657867 | 3_2:+77002681 | Msa0426560:CDS |
| CATAGCCATGACCTTCATGA+GGG | 0.658552 | 3_2:+77002769 | Msa0426560:CDS |
| TATTCTGTGTACAAGTGTGG+TGG | 0.659670 | 3_2:+77000788 | Msa0426560:CDS |
| GGTAACAAGAATGATCTACA+TGG | 0.670834 | 3_2:-77002915 | None:intergenic |
| TGAGCTTCACCGTAGAAGCG+AGG | 0.674280 | 3_2:+77003341 | Msa0426560:CDS |
| AGTTGGTACGAACCTTGAAG+GGG | 0.674859 | 3_2:+77001982 | Msa0426560:CDS |
| GCCAAAGGCATAAGTACTCG+CGG | 0.688085 | 3_2:+77002857 | Msa0426560:CDS |
| TGTTCCAAGATCCCCATACG+AGG | 0.688484 | 3_2:-77002365 | None:intergenic |
| CATACGAGGAGCTATTAGCA+AGG | 0.689093 | 3_2:-77002351 | None:intergenic |
| ACCAAGTAAAGTGATAAGAG+GGG | 0.689921 | 3_2:+77003743 | Msa0426560:CDS |
| GGATATTCTGTGTACAAGTG+TGG | 0.693148 | 3_2:+77000785 | Msa0426560:CDS |
| TAGTTGACATGAGATACTGA+TGG | 0.696878 | 3_2:-77003384 | None:intergenic |
| GGAAATGGTGAGTACAATGG+CGG | 0.699790 | 3_2:+77001470 | Msa0426560:CDS |
| GTGTTGGACAATACACAACA+TGG | 0.710351 | 3_2:+77002457 | Msa0426560:CDS |
| TAAGCGACATCACAAGCCAG+TGG | 0.712041 | 3_2:+77003128 | Msa0426560:CDS |
| TTGTACACAGAATATCCTTG+AGG | 0.719345 | 3_2:-77000779 | None:intergenic |
| TCATGTTGGAAATGAACACG+TGG | 0.723896 | 3_2:-77002970 | None:intergenic |
| GCTTCACCGTAGAAGCGAGG+TGG | 0.726929 | 3_2:+77003344 | Msa0426560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATTTATATCAATCAAAT+AGG | - | chr3_2:77001060-77001079 | None:intergenic | 15.0% |
| !!! | TTAATATCATTATTTGAAAC+CGG | - | chr3_2:77001194-77001213 | None:intergenic | 15.0% |
| !!! | AAAAATTAAATAATGGAAAG+TGG | + | chr3_2:77002032-77002051 | Msa0426560:CDS | 15.0% |
| !! | TAATCATCATAATATGAAAT+GGG | - | chr3_2:77003432-77003451 | None:intergenic | 15.0% |
| !! | ATAATCATCATAATATGAAA+TGG | - | chr3_2:77003433-77003452 | None:intergenic | 15.0% |
| !! | ATTTCATATTATGATGATTA+TGG | + | chr3_2:77003432-77003451 | Msa0426560:CDS | 15.0% |
| !! | TTTCATATTATGATGATTAT+GGG | + | chr3_2:77003433-77003452 | Msa0426560:CDS | 15.0% |
| !! | ATTATTGGAAATGATTTAGA+AGG | + | chr3_2:77001872-77001891 | Msa0426560:CDS | 20.0% |
| !! | ACATTTAACTATCCGAATTT+TGG | - | chr3_2:77000732-77000751 | None:intergenic | 25.0% |
| !! | AATTAGATTTTTCACCTTGA+AGG | - | chr3_2:77000826-77000845 | None:intergenic | 25.0% |
| !! | AGTAAAATTGAAGAGTACAA+TGG | - | chr3_2:77000862-77000881 | None:intergenic | 25.0% |
| ! | TATAACAGAATACATGACAT+TGG | - | chr3_2:77001022-77001041 | None:intergenic | 25.0% |
| ! | AATTCTCATGTAAATGTTGT+TGG | - | chr3_2:77001132-77001151 | None:intergenic | 25.0% |
| ! | TGAGAATTTCTATGAATATC+CGG | + | chr3_2:77001172-77001191 | Msa0426560:intron | 25.0% |
| ! | ATTGAGGAGATAAGTAATAA+TGG | + | chr3_2:77001620-77001639 | Msa0426560:CDS | 25.0% |
| !! | GAAATCACTGAAACTAATTT+TGG | + | chr3_2:77001743-77001762 | Msa0426560:CDS | 25.0% |
| ! | GCAGGAGAAAAATTAAATAA+TGG | + | chr3_2:77002025-77002044 | Msa0426560:CDS | 25.0% |
| ! | GATCATAGTTCAAAGTTTAA+TGG | + | chr3_2:77002214-77002233 | Msa0426560:CDS | 25.0% |
| ! | AGTGAATAAAAACAAAGTGT+TGG | + | chr3_2:77002441-77002460 | Msa0426560:CDS | 25.0% |
| ! | AAAAATGAAACTGATGAGAA+TGG | + | chr3_2:77002633-77002652 | Msa0426560:CDS | 25.0% |
| !! | TGTGACATACTCTTTTATAA+AGG | - | chr3_2:77003221-77003240 | None:intergenic | 25.0% |
| !!! | AAGATATTTTAATGCAATCG+CGG | + | chr3_2:77003593-77003612 | Msa0426560:CDS | 25.0% |
| TAGTTAAATGTCCTAAATGC+CGG | + | chr3_2:77000741-77000760 | Msa0426560:CDS | 30.0% | |
| CTCTTGTAATAGTTTGACAT+TGG | + | chr3_2:77000955-77000974 | Msa0426560:intron | 30.0% | |
| TACAGCTAAGAAACAAAGTT+TGG | + | chr3_2:77001280-77001299 | Msa0426560:intron | 30.0% | |
| !! | TCAAGAGAGTGTTATTTAGA+TGG | + | chr3_2:77001449-77001468 | Msa0426560:CDS | 30.0% |
| !! | GAGTGTTATTTAGATGGAAA+TGG | + | chr3_2:77001455-77001474 | Msa0426560:CDS | 30.0% |
| TTCATTACAAAGACCAAAAG+AGG | + | chr3_2:77001649-77001668 | Msa0426560:CDS | 30.0% | |
| ! | GAACAAATTAAGTCCTCTTT+TGG | - | chr3_2:77001665-77001684 | None:intergenic | 30.0% |
| ATTTGTTCATCTGATGAAGA+TGG | + | chr3_2:77001677-77001696 | Msa0426560:CDS | 30.0% | |
| AATCCTGAAGTGGAAATTAT+TGG | + | chr3_2:77001857-77001876 | Msa0426560:CDS | 30.0% | |
| TTTCCAATAATTTCCACTTC+AGG | - | chr3_2:77001863-77001882 | None:intergenic | 30.0% | |
| ATTACTGGAAACAATATAGC+AGG | + | chr3_2:77002007-77002026 | Msa0426560:CDS | 30.0% | |
| ACTATGATCTCTTAATTCTG+TGG | - | chr3_2:77002203-77002222 | None:intergenic | 30.0% | |
| TCAAAGTTTAATGGTGTTCT+TGG | + | chr3_2:77002223-77002242 | Msa0426560:CDS | 30.0% | |
| !!! | ATGACATGGTTTTTTTCATG+TGG | - | chr3_2:77002409-77002428 | None:intergenic | 30.0% |
| !!! | TCATCAGTTTCATTTTTTCC+TGG | - | chr3_2:77002630-77002649 | None:intergenic | 30.0% |
| TATATGAGTGAGGAAACAAA+TGG | + | chr3_2:77002691-77002710 | Msa0426560:CDS | 30.0% | |
| TCCAACATGAAGATTTATAC+AGG | + | chr3_2:77002983-77003002 | Msa0426560:CDS | 30.0% | |
| ACCTGTATAAATCTTCATGT+TGG | - | chr3_2:77002987-77003006 | None:intergenic | 30.0% | |
| ! | AAACAGATTCTGATTTTCAG+AGG | + | chr3_2:77003055-77003074 | Msa0426560:CDS | 30.0% |
| CATTTATGACAAGTGACAAA+AGG | - | chr3_2:77003165-77003184 | None:intergenic | 30.0% | |
| TTATAAAGGAGAAAATCTGC+AGG | - | chr3_2:77003207-77003226 | None:intergenic | 30.0% | |
| ! | CTCAAGTTTTCATTGAAGAA+TGG | + | chr3_2:77003270-77003289 | Msa0426560:CDS | 30.0% |
| !! | TAATATGAAATGGGTTTTGC+AGG | - | chr3_2:77003423-77003442 | None:intergenic | 30.0% |
| ! | TTTGTTGTGTAAGAGAAAGA+AGG | - | chr3_2:77003494-77003513 | None:intergenic | 30.0% |
| ACATATTTACCACCATTCAA+GGG | - | chr3_2:77003522-77003541 | None:intergenic | 30.0% | |
| AACATATTTACCACCATTCA+AGG | - | chr3_2:77003523-77003542 | None:intergenic | 30.0% | |
| !!! | TTATGAAGAGTACCTTTTTG+TGG | - | chr3_2:77003705-77003724 | None:intergenic | 30.0% |
| GTAAGGTGGTTACCAAAATT+CGG | + | chr3_2:77000717-77000736 | Msa0426560:CDS | 35.0% | |
| TTGTACACAGAATATCCTTG+AGG | - | chr3_2:77000782-77000801 | None:intergenic | 35.0% | |
| ACAGAATACATGACATTGGT+TGG | - | chr3_2:77001018-77001037 | None:intergenic | 35.0% | |
| GTAAATGTTGTTGGACAACA+TGG | - | chr3_2:77001123-77001142 | None:intergenic | 35.0% | |
| !! | TGCATTGATTTCTTGCATAC+TGG | - | chr3_2:77001321-77001340 | None:intergenic | 35.0% |
| GCATATTGATAGAAAACGTC+AGG | + | chr3_2:77001382-77001401 | Msa0426560:CDS | 35.0% | |
| TCTTCATCTGTGAACTTGAA+TGG | - | chr3_2:77001506-77001525 | None:intergenic | 35.0% | |
| TACCTAAATTGTCACTCAGA+AGG | + | chr3_2:77001549-77001568 | Msa0426560:CDS | 35.0% | |
| TCACAGTGAGTGATGTTATT+TGG | - | chr3_2:77001599-77001618 | None:intergenic | 35.0% | |
| ! | TATGACAAATCAGCTCTGAT+AGG | + | chr3_2:77001704-77001723 | Msa0426560:CDS | 35.0% |
| ! | ATGACAAATCAGCTCTGATA+GGG | + | chr3_2:77001705-77001724 | Msa0426560:CDS | 35.0% |
| GTTTCAGTGATTTCCATTTC+AGG | - | chr3_2:77001737-77001756 | None:intergenic | 35.0% | |
| ! | TGTAACTGGCTTCTCTTTAT+TGG | - | chr3_2:77001828-77001847 | None:intergenic | 35.0% |
| GGAGTAGAAGACTTGAATAA+TGG | + | chr3_2:77001893-77001912 | Msa0426560:CDS | 35.0% | |
| CCAGAATTAAAATCCTCTAG+TGG | - | chr3_2:77001926-77001945 | None:intergenic | 35.0% | |
| !!! | CCACTAGAGGATTTTAATTC+TGG | + | chr3_2:77001923-77001942 | Msa0426560:CDS | 35.0% |
| ! | TGGAGCTGATTTATCACTAT+TGG | - | chr3_2:77001963-77001982 | None:intergenic | 35.0% |
| ! | ATAGCTGATTGGTCATTGTT+AGG | - | chr3_2:77002097-77002116 | None:intergenic | 35.0% |
| AAATGCAAGCAATGAGATTG+TGG | + | chr3_2:77002165-77002184 | Msa0426560:CDS | 35.0% | |
| TGTGATATATGAGCTTCTTG+TGG | - | chr3_2:77002275-77002294 | None:intergenic | 35.0% | |
| ACAAGAAGCTCATATATCAC+AGG | + | chr3_2:77002274-77002293 | Msa0426560:CDS | 35.0% | |
| CTTGATCACTCTAGATGTAT+CGG | + | chr3_2:77002808-77002827 | Msa0426560:CDS | 35.0% | |
| TGTATCGGAAGATGTAATCA+TGG | + | chr3_2:77002823-77002842 | Msa0426560:CDS | 35.0% | |
| GGTAACAAGAATGATCTACA+TGG | - | chr3_2:77002918-77002937 | None:intergenic | 35.0% | |
| !! | ATTCTGATTTTCAGAGGCAT+AGG | + | chr3_2:77003061-77003080 | Msa0426560:CDS | 35.0% |
| !! | TTCTGATTTTCAGAGGCATA+GGG | + | chr3_2:77003062-77003081 | Msa0426560:CDS | 35.0% |
| TGTGGTGAGGAAATACTTAA+GGG | + | chr3_2:77003089-77003108 | Msa0426560:CDS | 35.0% | |
| CTTAAGGGACAAACATAACT+TGG | + | chr3_2:77003104-77003123 | Msa0426560:CDS | 35.0% | |
| GAAATGTGGTAAATGTTCAG+AGG | + | chr3_2:77003245-77003264 | Msa0426560:CDS | 35.0% | |
| CCTATAGTATTCGATGAGAA+AGG | - | chr3_2:77003309-77003328 | None:intergenic | 35.0% | |
| CCTTTCTCATCGAATACTAT+AGG | + | chr3_2:77003306-77003325 | Msa0426560:CDS | 35.0% | |
| TAGTTGACATGAGATACTGA+TGG | - | chr3_2:77003387-77003406 | None:intergenic | 35.0% | |
| CAACAAATTCATCCCTTGAA+TGG | + | chr3_2:77003507-77003526 | Msa0426560:CDS | 35.0% | |
| AGGTACTCTTCATAAACTCA+TGG | + | chr3_2:77003710-77003729 | Msa0426560:CDS | 35.0% | |
| GGTACTCTTCATAAACTCAT+GGG | + | chr3_2:77003711-77003730 | Msa0426560:CDS | 35.0% | |
| ACACCAAGTAAAGTGATAAG+AGG | + | chr3_2:77003741-77003760 | Msa0426560:CDS | 35.0% | |
| CACCAAGTAAAGTGATAAGA+GGG | + | chr3_2:77003742-77003761 | Msa0426560:CDS | 35.0% | |
| ACCAAGTAAAGTGATAAGAG+GGG | + | chr3_2:77003743-77003762 | Msa0426560:CDS | 35.0% | |
| GGATATTCTGTGTACAAGTG+TGG | + | chr3_2:77000785-77000804 | Msa0426560:CDS | 40.0% | |
| TATTCTGTGTACAAGTGTGG+TGG | + | chr3_2:77000788-77000807 | Msa0426560:CDS | 40.0% | |
| CAGTGATTCAGAACAGAAAG+AGG | - | chr3_2:77001235-77001254 | None:intergenic | 40.0% | |
| TCCTCGGAAAGATAGTTTGA+AGG | + | chr3_2:77001409-77001428 | Msa0426560:CDS | 40.0% | |
| GATGGAAATGGTGAGTACAA+TGG | + | chr3_2:77001467-77001486 | Msa0426560:CDS | 40.0% | |
| GTTCACAGATGAAGAAGAAC+TGG | + | chr3_2:77001511-77001530 | Msa0426560:CDS | 40.0% | |
| AGAAGAACTGGAAAGTGAGT+TGG | + | chr3_2:77001523-77001542 | Msa0426560:CDS | 40.0% | |
| TGCCTTCTGAGTGACAATTT+AGG | - | chr3_2:77001554-77001573 | None:intergenic | 40.0% | |
| GTTATTTGGACCACCTTTGT+TGG | - | chr3_2:77001585-77001604 | None:intergenic | 40.0% | |
| ! | TGACAAATCAGCTCTGATAG+GGG | + | chr3_2:77001706-77001725 | Msa0426560:CDS | 40.0% |
| !! | TTTTGGAAACTTGTCGCTAG+AGG | + | chr3_2:77001760-77001779 | Msa0426560:CDS | 40.0% |
| TTTGGAAACTTGTCGCTAGA+GGG | + | chr3_2:77001761-77001780 | Msa0426560:CDS | 40.0% | |
| AAAGAGAAGCCAGTTACAGA+AGG | + | chr3_2:77001830-77001849 | Msa0426560:CDS | 40.0% | |
| TAATGGCAATTTGCCACTAG+AGG | + | chr3_2:77001910-77001929 | Msa0426560:CDS | 40.0% | |
| AGTGATAAATCAGCTCCAGT+TGG | + | chr3_2:77001965-77001984 | Msa0426560:CDS | 40.0% | |
| AACCTTGAAGGGGAAATTAC+TGG | + | chr3_2:77001992-77002011 | Msa0426560:CDS | 40.0% | |
| TTCCAGTAATTTCCCCTTCA+AGG | - | chr3_2:77001997-77002016 | None:intergenic | 40.0% | |
| CAATGACCAATCAGCTATAG+AGG | + | chr3_2:77002099-77002118 | Msa0426560:CDS | 40.0% | |
| TGGTATCCTCTATAGCTGAT+TGG | - | chr3_2:77002108-77002127 | None:intergenic | 40.0% | |
| AGAGGATACCAAATCTGAAG+TGG | + | chr3_2:77002117-77002136 | Msa0426560:CDS | 40.0% | |
| TGTTGTGTCCACTTCAGATT+TGG | - | chr3_2:77002128-77002147 | None:intergenic | 40.0% | |
| ATATGAGCTTCTTGTGGTTG+AGG | - | chr3_2:77002269-77002288 | None:intergenic | 40.0% | |
| GGAATGACCAGAAAAGGTAA+AGG | + | chr3_2:77002328-77002347 | Msa0426560:CDS | 40.0% | |
| TTGCTAATAGCTCCTCGTAT+GGG | + | chr3_2:77002353-77002372 | Msa0426560:CDS | 40.0% | |
| GTGTTGGACAATACACAACA+TGG | + | chr3_2:77002457-77002476 | Msa0426560:CDS | 40.0% | |
| CACAACATGGTAATTCACGT+TGG | + | chr3_2:77002470-77002489 | Msa0426560:CDS | 40.0% | |
| CTTTCATAGCCTGATCTGTA+AGG | - | chr3_2:77002535-77002554 | None:intergenic | 40.0% | |
| TACAGATCAGGCTATGAAAG+TGG | + | chr3_2:77002535-77002554 | Msa0426560:CDS | 40.0% | |
| TCATCATGCACTCCATTTGA+TGG | - | chr3_2:77002565-77002584 | None:intergenic | 40.0% | |
| ATCAAATGGAGTGCATGATG+AGG | + | chr3_2:77002564-77002583 | Msa0426560:CDS | 40.0% | |
| TCAAATGGAGTGCATGATGA+GGG | + | chr3_2:77002565-77002584 | Msa0426560:CDS | 40.0% | |
| !!! | GAGAATGGTTTTGAAGTTGC+AGG | + | chr3_2:77002648-77002667 | Msa0426560:CDS | 40.0% |
| ACAAATGGAAGAGTTTCTGC+TGG | + | chr3_2:77002706-77002725 | Msa0426560:CDS | 40.0% | |
| TTCTGCTGGTGTATCTTACA+AGG | + | chr3_2:77002720-77002739 | Msa0426560:CDS | 40.0% | |
| TCTGCTGGTGTATCTTACAA+GGG | + | chr3_2:77002721-77002740 | Msa0426560:CDS | 40.0% | |
| !! | GGTATTGGTATGCAGAACTA+CGG | - | chr3_2:77002750-77002769 | None:intergenic | 40.0% |
| ! | CTTGTTGCTTCAGCTGAATA+AGG | - | chr3_2:77002886-77002905 | None:intergenic | 40.0% |
| AGAAGAATCTGCTAAGACAC+GGG | - | chr3_2:77002950-77002969 | None:intergenic | 40.0% | |
| GAGAAGAATCTGCTAAGACA+CGG | - | chr3_2:77002951-77002970 | None:intergenic | 40.0% | |
| TCATGTTGGAAATGAACACG+TGG | - | chr3_2:77002973-77002992 | None:intergenic | 40.0% | |
| ! | GCAACAATTTTGCACTGGAT+AGG | - | chr3_2:77003010-77003029 | None:intergenic | 40.0% |
| ! | GAAGAGCAACAATTTTGCAC+TGG | - | chr3_2:77003015-77003034 | None:intergenic | 40.0% |
| !! | TCTGTTTCACTGAAGCATTG+TGG | - | chr3_2:77003042-77003061 | None:intergenic | 40.0% |
| CTGTGGTGAGGAAATACTTA+AGG | + | chr3_2:77003088-77003107 | Msa0426560:CDS | 40.0% | |
| GTATGTCACAAGCTGAAATG+TGG | + | chr3_2:77003231-77003250 | Msa0426560:CDS | 40.0% | |
| CAAATTCATCCCTTGAATGG+TGG | + | chr3_2:77003510-77003529 | Msa0426560:CDS | 40.0% | |
| TTGAGCTAGGAGAGACATTT+GGG | - | chr3_2:77003548-77003567 | None:intergenic | 40.0% | |
| TTTGCCTTGAATGTTGAGCT+AGG | - | chr3_2:77003561-77003580 | None:intergenic | 40.0% | |
| ! | GTTGATTCATCTGTATCCGT+TGG | - | chr3_2:77003621-77003640 | None:intergenic | 40.0% |
| ACGGATACAGATGAATCAAC+TGG | + | chr3_2:77003621-77003640 | Msa0426560:CDS | 40.0% | |
| TTTCCTGGTTTCAGACATAC+TGG | - | chr3_2:77003655-77003674 | None:intergenic | 40.0% | |
| ! | CTTTTCTGCTGACAATTTCC+TGG | - | chr3_2:77003670-77003689 | None:intergenic | 40.0% |
| CAGGAAATTGTCAGCAGAAA+AGG | + | chr3_2:77003668-77003687 | Msa0426560:CDS | 40.0% | |
| GAAATTGTCAGCAGAAAAGG+AGG | + | chr3_2:77003671-77003690 | Msa0426560:CDS | 40.0% | |
| !!! | TGAAGAGTACCTTTTTGTGG+AGG | - | chr3_2:77003702-77003721 | None:intergenic | 40.0% |
| ACAGAATATCCTTGAGGCTC+TGG | - | chr3_2:77000776-77000795 | None:intergenic | 45.0% | |
| CAAGAAATCAATGCAGCTCC+TGG | + | chr3_2:77001326-77001345 | Msa0426560:CDS | 45.0% | |
| ! | ACAAGATCCGATGCTTTTCC+AGG | - | chr3_2:77001347-77001366 | None:intergenic | 45.0% |
| !!! | GCATCGGATCTTGTTTTTGC+AGG | + | chr3_2:77001353-77001372 | Msa0426560:CDS | 45.0% |
| GAAAACGTCAGGTTCTTCCT+CGG | + | chr3_2:77001393-77001412 | Msa0426560:CDS | 45.0% | |
| GCCTTCAAACTATCTTTCCG+AGG | - | chr3_2:77001413-77001432 | None:intergenic | 45.0% | |
| GGAAATGGTGAGTACAATGG+CGG | + | chr3_2:77001470-77001489 | Msa0426560:CDS | 45.0% | |
| ! | AGGCATAGAGTGTCCAACAA+AGG | + | chr3_2:77001569-77001588 | Msa0426560:CDS | 45.0% |
| ! | CATAGAGTGTCCAACAAAGG+TGG | + | chr3_2:77001572-77001591 | Msa0426560:CDS | 45.0% |
| CATCACTCACTGTGAGATTG+AGG | + | chr3_2:77001604-77001623 | Msa0426560:CDS | 45.0% | |
| GGATTTGCACCTTCTGTAAC+TGG | - | chr3_2:77001842-77001861 | None:intergenic | 45.0% | |
| ! | AGAAGGTGCAAATCCTGAAG+TGG | + | chr3_2:77001847-77001866 | Msa0426560:CDS | 45.0% |
| ! | CAGTTGGTACGAACCTTGAA+GGG | + | chr3_2:77001981-77002000 | Msa0426560:CDS | 45.0% |
| ! | AGTTGGTACGAACCTTGAAG+GGG | + | chr3_2:77001982-77002001 | Msa0426560:CDS | 45.0% |
| TAATGGAAAGTGGCCACAAG+AGG | + | chr3_2:77002042-77002061 | Msa0426560:CDS | 45.0% | |
| AATGGAAAGTGGCCACAAGA+GGG | + | chr3_2:77002043-77002062 | Msa0426560:CDS | 45.0% | |
| ! | TCTGAAGTGGACACAACAGA+AGG | + | chr3_2:77002130-77002149 | Msa0426560:CDS | 45.0% |
| AATGCTTACACCGTTGCTGA+AGG | + | chr3_2:77002307-77002326 | Msa0426560:CDS | 45.0% | |
| TCTGGTCATTCCTTCAGCAA+CGG | - | chr3_2:77002320-77002339 | None:intergenic | 45.0% | |
| GCTGAAGGAATGACCAGAAA+AGG | + | chr3_2:77002322-77002341 | Msa0426560:CDS | 45.0% | |
| ! | AGCAAGGCCTTTACCTTTTC+TGG | - | chr3_2:77002338-77002357 | None:intergenic | 45.0% |
| CATACGAGGAGCTATTAGCA+AGG | - | chr3_2:77002354-77002373 | None:intergenic | 45.0% | |
| CTTGCTAATAGCTCCTCGTA+TGG | + | chr3_2:77002352-77002371 | Msa0426560:CDS | 45.0% | |
| TGCTAATAGCTCCTCGTATG+GGG | + | chr3_2:77002354-77002373 | Msa0426560:CDS | 45.0% | |
| CTGTGCTGTCTTTCATGACA+TGG | - | chr3_2:77002423-77002442 | None:intergenic | 45.0% | |
| ! | GATCTGTAAGGCATTCTCGA+TGG | - | chr3_2:77002523-77002542 | None:intergenic | 45.0% |
| TCGAGAATGCCTTACAGATC+AGG | + | chr3_2:77002523-77002542 | Msa0426560:CDS | 45.0% | |
| CAAGACTCGCTATATGAGTG+AGG | + | chr3_2:77002681-77002700 | Msa0426560:CDS | 45.0% | |
| CTGCTGGTGTATCTTACAAG+GGG | + | chr3_2:77002722-77002741 | Msa0426560:CDS | 45.0% | |
| GAAGGTCATGGCTATGGTAT+TGG | - | chr3_2:77002765-77002784 | None:intergenic | 45.0% | |
| CATAGCCATGACCTTCATGA+GGG | + | chr3_2:77002769-77002788 | Msa0426560:CDS | 45.0% | |
| GAGAAAACCTTCCCTCATGA+AGG | - | chr3_2:77002783-77002802 | None:intergenic | 45.0% | |
| CTAAGACACGGGAACAACAA+TGG | - | chr3_2:77002939-77002958 | None:intergenic | 45.0% | |
| ! | TGGGTTTTGCAGGTGAATAC+TGG | - | chr3_2:77003413-77003432 | None:intergenic | 45.0% |
| GTTGAGCTAGGAGAGACATT+TGG | - | chr3_2:77003549-77003568 | None:intergenic | 45.0% | |
| CTCTCCTAGCTCAACATTCA+AGG | + | chr3_2:77003554-77003573 | Msa0426560:CDS | 45.0% | |
| GAGGTAAAGCCTCCACAAAA+AGG | + | chr3_2:77003690-77003709 | Msa0426560:CDS | 45.0% | |
| GCCCCTCTTATCACTTTACT+TGG | - | chr3_2:77003747-77003766 | None:intergenic | 45.0% | |
| GGAAGAAGTTGCCGGCATTT+AGG | - | chr3_2:77000755-77000774 | None:intergenic | 50.0% | |
| CAACTTCTTCCAGAGCCTCA+AGG | + | chr3_2:77000764-77000783 | Msa0426560:CDS | 50.0% | |
| !! | GTGTACAAGTGTGGTGGATG+TGG | + | chr3_2:77000794-77000813 | Msa0426560:CDS | 50.0% |
| ! | TGCAGCTCCTGGAAAAGCAT+CGG | + | chr3_2:77001337-77001356 | Msa0426560:CDS | 50.0% |
| GATAGGGGACAGACCTGAAA+TGG | + | chr3_2:77001721-77001740 | Msa0426560:CDS | 50.0% | |
| !! | GCAGATGCGGTGTTGATTTC+TGG | + | chr3_2:77001785-77001804 | Msa0426560:CDS | 50.0% |
| CCTTCAAGGTTCGTACCAAC+TGG | - | chr3_2:77001983-77002002 | None:intergenic | 50.0% | |
| ! | CCAGTTGGTACGAACCTTGA+AGG | + | chr3_2:77001980-77001999 | Msa0426560:CDS | 50.0% |
| TGTTCCAAGATCCCCATACG+AGG | - | chr3_2:77002368-77002387 | None:intergenic | 50.0% | |
| GATCAGGCTATGAAAGTGGC+AGG | + | chr3_2:77002539-77002558 | Msa0426560:CDS | 50.0% | |
| GAAAGTGGCAGGCCATCAAA+TGG | + | chr3_2:77002550-77002569 | Msa0426560:CDS | 50.0% | |
| CCTCATGAAGGTCATGGCTA+TGG | - | chr3_2:77002771-77002790 | None:intergenic | 50.0% | |
| CCATAGCCATGACCTTCATG+AGG | + | chr3_2:77002768-77002787 | Msa0426560:CDS | 50.0% | |
| ACCTTCCCTCATGAAGGTCA+TGG | - | chr3_2:77002777-77002796 | None:intergenic | 50.0% | |
| CGAGTACTTATGCCTTTGGC+GGG | - | chr3_2:77002857-77002876 | None:intergenic | 50.0% | |
| GCGAGTACTTATGCCTTTGG+CGG | - | chr3_2:77002858-77002877 | None:intergenic | 50.0% | |
| ! | GCCAAAGGCATAAGTACTCG+CGG | + | chr3_2:77002857-77002876 | Msa0426560:CDS | 50.0% |
| TCCGCGAGTACTTATGCCTT+TGG | - | chr3_2:77002861-77002880 | None:intergenic | 50.0% | |
| TAAGCGACATCACAAGCCAG+TGG | + | chr3_2:77003128-77003147 | Msa0426560:CDS | 50.0% | |
| AATCTGCAGGTAGCTGAAGC+AGG | - | chr3_2:77003194-77003213 | None:intergenic | 50.0% | |
| CACTAACCACCTCGCTTCTA+CGG | - | chr3_2:77003353-77003372 | None:intergenic | 50.0% | |
| TAATGCAATCGCGGCTCCAA+CGG | + | chr3_2:77003602-77003621 | Msa0426560:CDS | 50.0% | |
| CCTGGTTTCAGACATACTGG+AGG | - | chr3_2:77003652-77003671 | None:intergenic | 50.0% | |
| ! | CCTCCAGTATGTCTGAAACC+AGG | + | chr3_2:77003649-77003668 | Msa0426560:CDS | 50.0% |
| !! | GAGGCTCTGGAAGAAGTTGC+CGG | - | chr3_2:77000763-77000782 | None:intergenic | 55.0% |
| !! | GGATGTGGCACTGACCTTCA+AGG | + | chr3_2:77000809-77000828 | Msa0426560:CDS | 55.0% |
| AAGTGGCCACAAGAGGGAGA+AGG | + | chr3_2:77002049-77002068 | Msa0426560:CDS | 55.0% | |
| TCCTCTCCTTCTCCCTCTTG+TGG | - | chr3_2:77002058-77002077 | None:intergenic | 55.0% | |
| AGCTCCTCGTATGGGGATCT+TGG | + | chr3_2:77002361-77002380 | Msa0426560:CDS | 55.0% | |
| TCTTTCACACGACTCGCGTG+AGG | + | chr3_2:77002597-77002616 | Msa0426560:CDS | 55.0% | |
| GCCATGACCTTCATGAGGGA+AGG | + | chr3_2:77002773-77002792 | Msa0426560:CDS | 55.0% | |
| ATGGAATTGCGTCCCGCCAA+AGG | + | chr3_2:77002842-77002861 | Msa0426560:CDS | 55.0% | |
| ! | TCAGAGGCATAGGGCTACTG+TGG | + | chr3_2:77003071-77003090 | Msa0426560:CDS | 55.0% |
| CTACGGTGAAGCTCACGAGA+TGG | - | chr3_2:77003336-77003355 | None:intergenic | 55.0% | |
| TGAGCTTCACCGTAGAAGCG+AGG | + | chr3_2:77003341-77003360 | Msa0426560:CDS | 55.0% | |
| CGTAGAAGCGAGGTGGTTAG+TGG | + | chr3_2:77003351-77003370 | Msa0426560:CDS | 55.0% | |
| GTCGCTAGAGGGAGCAGATG+CGG | + | chr3_2:77001772-77001791 | Msa0426560:CDS | 60.0% | |
| GCCACAAGAGGGAGAAGGAG+AGG | + | chr3_2:77002054-77002073 | Msa0426560:CDS | 60.0% | |
| GGCATAGGGCTACTGTGGTG+AGG | + | chr3_2:77003076-77003095 | Msa0426560:CDS | 60.0% | |
| CGACATCACAAGCCAGTGGC+AGG | + | chr3_2:77003132-77003151 | Msa0426560:CDS | 60.0% | |
| CATCACAAGCCAGTGGCAGG+TGG | + | chr3_2:77003135-77003154 | Msa0426560:CDS | 60.0% | |
| AAAGGAGCTCCACCTGCCAC+TGG | - | chr3_2:77003147-77003166 | None:intergenic | 60.0% | |
| GCTTCACCGTAGAAGCGAGG+TGG | + | chr3_2:77003344-77003363 | Msa0426560:CDS | 60.0% | |
| CTCGCGTGAGGACACTGACC+AGG | + | chr3_2:77002609-77002628 | Msa0426560:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 77000710 | 77003776 | 77000710 | ID=Msa0426560;Name=Msa0426560 |
| chr3_2 | mRNA | 77000710 | 77003776 | 77000710 | ID=Msa0426560-mRNA-1;Parent=Msa0426560;Name=Msa0426560-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|870 |
| chr3_2 | exon | 77000710 | 77000830 | 77000710 | ID=Msa0426560-mRNA-1:exon:20031;Parent=Msa0426560-mRNA-1 |
| chr3_2 | exon | 77001285 | 77003776 | 77001285 | ID=Msa0426560-mRNA-1:exon:20032;Parent=Msa0426560-mRNA-1 |
| chr3_2 | CDS | 77000710 | 77000830 | 77000710 | ID=Msa0426560-mRNA-1:cds;Parent=Msa0426560-mRNA-1 |
| chr3_2 | CDS | 77001285 | 77003776 | 77001285 | ID=Msa0426560-mRNA-1:cds;Parent=Msa0426560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
