Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515380 | XP_003602028.1 | 99.548 | 221 | 0 | 1 | 1 | 221 | 1 | 220 | 1.06e-158 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515380 | G7J4F6 | 99.548 | 221 | 0 | 1 | 1 | 221 | 1 | 220 | 5.05e-159 | 447 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0178030 | Msa0515380 | -0.806919 | 6.511568e-50 | -8.615850e-47 |
| Msa0196020 | Msa0515380 | -0.800510 | 1.393390e-48 | -8.615850e-47 |
| Msa0374250 | Msa0515380 | 0.872843 | 2.329178e-67 | -8.615850e-47 |
| Msa0414950 | Msa0515380 | -0.805422 | 1.345448e-49 | -8.615850e-47 |
| Msa0436280 | Msa0515380 | -0.801523 | 8.649914e-49 | -8.615850e-47 |
| Msa0469790 | Msa0515380 | 0.855029 | 8.297225e-62 | -8.615850e-47 |
| Msa0469820 | Msa0515380 | 0.855325 | 6.806661e-62 | -8.615850e-47 |
| Msa0515380 | Msa1193950 | -0.815609 | 8.469047e-52 | -8.615850e-47 |
| Msa0515380 | Msa1269580 | -0.805058 | 1.603709e-49 | -8.615850e-47 |
| Msa0515380 | Msa1390120 | 0.801772 | 7.689759e-49 | -8.615850e-47 |
| Msa0515380 | Msa1395530 | 0.807199 | 5.679944e-50 | -8.615850e-47 |
| Msa0515380 | Msa1411400 | -0.810406 | 1.170847e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515380 | MtrunA17_Chr3g0124651 | 99.548 | 221 | 0 | 1 | 1 | 221 | 1 | 220 | 9.73e-163 | 447 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515380 | AT1G21830.1 | 41.228 | 228 | 94 | 10 | 4 | 218 | 2 | 202 | 1.14e-35 | 125 |
| Msa0515380 | AT1G44608.1 | 35.263 | 190 | 87 | 7 | 13 | 199 | 12 | 168 | 1.39e-18 | 80.1 |
Find 74 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTATTTGTTTGTGTCTT+TGG | 0.113742 | 3_4:+66619205 | Msa0515380:three_prime_UTR |
| GAAAGTGACACCAATTAATT+TGG | 0.199806 | 3_4:+66619150 | Msa0515380:three_prime_UTR |
| AATTCCATAACCAAATTAAT+TGG | 0.200699 | 3_4:-66619160 | None:intergenic |
| CTATTCATGTTTGTTAATAA+AGG | 0.249204 | 3_4:-66617066 | None:intergenic |
| ACACCAACAACTACTTGTTT+AGG | 0.281173 | 3_4:-66617129 | None:intergenic |
| GTGATGTGAACTAATTTAAA+TGG | 0.285211 | 3_4:-66616954 | None:intergenic |
| ATTCATAAGATCTTTGCTTT+TGG | 0.295772 | 3_4:+66617318 | Msa0515380:CDS |
| AAGAAAGTGAATTGTGAAAA+AGG | 0.296918 | 3_4:-66617019 | None:intergenic |
| GACACCAATTAATTTGGTTA+TGG | 0.306860 | 3_4:+66619156 | Msa0515380:three_prime_UTR |
| TCAATCAAGTTTGAAGGAAA+TGG | 0.311026 | 3_4:+66618824 | Msa0515380:CDS |
| GAATGAAAGGCTTCTTCTAT+TGG | 0.318441 | 3_4:+66617167 | Msa0515380:CDS |
| CACCAACAACTACTTGTTTA+GGG | 0.318727 | 3_4:-66617128 | None:intergenic |
| CTTTATTAACAAACATGAAT+AGG | 0.318817 | 3_4:+66617067 | Msa0515380:exon |
| CAAAGTCACGTGACACATTC+AGG | 0.325911 | 3_4:+66618954 | Msa0515380:CDS |
| AGCCTTTCATTCAAGCATAA+AGG | 0.335003 | 3_4:-66617156 | None:intergenic |
| TTATGAATAGAAGAAGAATT+TGG | 0.340183 | 3_4:-66617303 | None:intergenic |
| ACATGAATAGGAATGGATAT+AGG | 0.360762 | 3_4:+66617079 | Msa0515380:exon |
| CAATCAAGTTTGAAGGAAAT+GGG | 0.363983 | 3_4:+66618825 | Msa0515380:CDS |
| GAAACTAAAATAGAAGAGTA+TGG | 0.367581 | 3_4:-66616884 | None:intergenic |
| GCCTTTCATTCAAGCATAAA+GGG | 0.367664 | 3_4:-66617155 | None:intergenic |
| CTCATAAGGTGGAAGAAAAC+TGG | 0.371691 | 3_4:+66619007 | Msa0515380:CDS |
| CATGAATAGGAATGGATATA+GGG | 0.372518 | 3_4:+66617080 | Msa0515380:exon |
| GGTTCTTCTTGCAATTCTCT+AGG | 0.383703 | 3_4:-66618892 | None:intergenic |
| TGGTCTCTAATTTGTCCTCA+TGG | 0.391766 | 3_4:-66618913 | None:intergenic |
| CACCCTAAACAAGTAGTTGT+TGG | 0.404809 | 3_4:+66617126 | Msa0515380:CDS |
| TTCATATCAATCAAGTTTGA+AGG | 0.415927 | 3_4:+66618818 | Msa0515380:CDS |
| GCCCTTTATGCTTGAATGAA+AGG | 0.420777 | 3_4:+66617154 | Msa0515380:CDS |
| ATTATTGAGAATATATATGT+TGG | 0.430776 | 3_4:-66616915 | None:intergenic |
| GTCACATGTTCCAGCTCATA+AGG | 0.455731 | 3_4:+66618993 | Msa0515380:CDS |
| TGCATGCTCTATCACACTCT+TGG | 0.456919 | 3_4:-66618933 | None:intergenic |
| CTACTATTCATATTGACATA+TGG | 0.459031 | 3_4:+66619312 | Msa0515380:three_prime_UTR |
| GTTCTTCTTGCAATTCTCTA+GGG | 0.470567 | 3_4:-66618891 | None:intergenic |
| AAGAAGAACGGTGGTTATGA+TGG | 0.478238 | 3_4:-66617212 | None:intergenic |
| CACGTAGGCAACAAGGTTGA+AGG | 0.495184 | 3_4:+66619040 | Msa0515380:CDS |
| TTATTGAGAATATATATGTT+GGG | 0.498348 | 3_4:-66616914 | None:intergenic |
| TGAATAGAAGAAGAATTTGG+TGG | 0.500634 | 3_4:-66617300 | None:intergenic |
| GTCTACTATACTTTATTCCA+TGG | 0.505676 | 3_4:-66619122 | None:intergenic |
| TTAACAAACATGAATAGGAA+TGG | 0.508320 | 3_4:+66617072 | Msa0515380:exon |
| CTTCTATTGGCTGCAAAACA+AGG | 0.509299 | 3_4:+66617180 | Msa0515380:CDS |
| AACTAATTTAAATGGATGGA+TGG | 0.530223 | 3_4:-66616946 | None:intergenic |
| ATTTGGTGGCTTTGTGTGTA+CGG | 0.533418 | 3_4:-66617286 | None:intergenic |
| CTTCTTGCAATTCTCTAGGG+AGG | 0.538057 | 3_4:-66618888 | None:intergenic |
| AATTTAAATGGATGGATGGA+AGG | 0.543920 | 3_4:-66616942 | None:intergenic |
| AAACTAAAATAGAAGAGTAT+GGG | 0.548003 | 3_4:-66616883 | None:intergenic |
| ACACATTCAGGTGGAGAAAG+AGG | 0.548112 | 3_4:+66618966 | Msa0515380:CDS |
| TGTGAACTAATTTAAATGGA+TGG | 0.550623 | 3_4:-66616950 | None:intergenic |
| CAGTGAAAGTCAGAAAAGGC+TGG | 0.555530 | 3_4:+66619068 | Msa0515380:CDS |
| GGAGCAGTGAAAGTCAGAAA+AGG | 0.558648 | 3_4:+66619064 | Msa0515380:CDS |
| CTTGCAATTCTCTAGGGAGG+AGG | 0.560179 | 3_4:-66618885 | None:intergenic |
| TCTCGTCACTGCAAATCTCA+TGG | 0.576256 | 3_4:+66617363 | Msa0515380:CDS |
| CTTCAACCTTGTTGCCTACG+TGG | 0.576338 | 3_4:-66619039 | None:intergenic |
| AAGTCAGAAAAGGCTGGATG+AGG | 0.577043 | 3_4:+66619074 | Msa0515380:CDS |
| TAGAAGATGAAGAAGAAGAA+CGG | 0.577088 | 3_4:-66617224 | None:intergenic |
| TTCAGGTGGAGAAAGAGGAT+TGG | 0.577306 | 3_4:+66618971 | Msa0515380:CDS |
| GATATCTCTCCTAGTCCAGA+AGG | 0.583190 | 3_4:+66617402 | Msa0515380:CDS |
| GGAAAAGAGCACGGTCTCAA+AGG | 0.587379 | 3_4:+66618859 | Msa0515380:CDS |
| CAACAACTACTTGTTTAGGG+TGG | 0.614040 | 3_4:-66617125 | None:intergenic |
| AGGAAATGGGGTAGCCTCGT+GGG | 0.614477 | 3_4:+66618838 | Msa0515380:CDS |
| TATTGGCTGCAAAACAAGGT+CGG | 0.618913 | 3_4:+66617184 | Msa0515380:CDS |
| ATAGCAAAGTGATGATGATG+AGG | 0.620542 | 3_4:-66619229 | None:intergenic |
| TGTATGCCACGTAGGCAACA+AGG | 0.624880 | 3_4:+66619033 | Msa0515380:CDS |
| AAGGAAATGGGGTAGCCTCG+TGG | 0.628547 | 3_4:+66618837 | Msa0515380:CDS |
| ACATGTTCCAGCTCATAAGG+TGG | 0.637291 | 3_4:+66618996 | Msa0515380:CDS |
| AATCAAGTTTGAAGGAAATG+GGG | 0.642471 | 3_4:+66618826 | Msa0515380:CDS |
| AGCCTCGTGGGAAAAGAGCA+CGG | 0.642699 | 3_4:+66618850 | Msa0515380:CDS |
| AAGAACGGTGGTTATGATGG+TGG | 0.643533 | 3_4:-66617209 | None:intergenic |
| AAAGAGAAAGAAGAAGACCA+TGG | 0.647060 | 3_4:+66619105 | Msa0515380:CDS |
| AAGATGAAGAAGAAGAACGG+TGG | 0.658130 | 3_4:-66617221 | None:intergenic |
| GTAGGCAACAAGGTTGAAGG+AGG | 0.670514 | 3_4:+66619043 | Msa0515380:CDS |
| ACTGGAGGTGTATGCCACGT+AGG | 0.690562 | 3_4:+66619025 | Msa0515380:CDS |
| TTAGGGTGGAAATTGCAACA+TGG | 0.705580 | 3_4:-66617111 | None:intergenic |
| ATAAGGTGGAAGAAAACTGG+AGG | 0.709203 | 3_4:+66619010 | Msa0515380:CDS |
| AGTCACGTGACACATTCAGG+TGG | 0.713866 | 3_4:+66618957 | Msa0515380:CDS |
| GAATTGCAAGAAGAACCATG+AGG | 0.821093 | 3_4:+66618898 | Msa0515380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTATATTTCAAGATTA+TGG | + | chr3_4:66618074-66618093 | Msa0515380:intron | 10.0% |
| !! | TTATACTTTATACAATATTA+AGG | - | chr3_4:66618565-66618584 | None:intergenic | 10.0% |
| !! | TGTTAGTAATTAAATTAATT+TGG | - | chr3_4:66618610-66618629 | None:intergenic | 10.0% |
| !!! | AAGTTTTTTTTTTTTTTTGA+AGG | + | chr3_4:66619264-66619283 | Msa0515380:three_prime_UTR | 10.0% |
| !! | TTATTGAGAATATATATGTT+GGG | - | chr3_4:66616917-66616936 | None:intergenic | 15.0% |
| !! | ATTATTGAGAATATATATGT+TGG | - | chr3_4:66616918-66616937 | None:intergenic | 15.0% |
| !!! | TTTGGAAAAAAAAATCTTTT+TGG | - | chr3_4:66617698-66617717 | None:intergenic | 15.0% |
| !!! | CAACTTCTTTTTAATTAATT+TGG | - | chr3_4:66617716-66617735 | None:intergenic | 15.0% |
| !! | CAAATTAATTAAAAAGAAGT+TGG | + | chr3_4:66617714-66617733 | Msa0515380:intron | 15.0% |
| !! | CAATAATGAAAAGAAATTAA+TGG | - | chr3_4:66617835-66617854 | None:intergenic | 15.0% |
| !!! | CATTAATTTCTTTTCATTAT+TGG | + | chr3_4:66617833-66617852 | Msa0515380:intron | 15.0% |
| !! | ATAGTAATAATGTTCTTAAT+TGG | - | chr3_4:66618046-66618065 | None:intergenic | 15.0% |
| !!! | AAACTAAAATAGAAGAGTAT+GGG | - | chr3_4:66616886-66616905 | None:intergenic | 20.0% |
| !!! | GTTTGTTAATAAAGGTTTTT+TGG | - | chr3_4:66617061-66617080 | None:intergenic | 20.0% |
| !!! | CTATTCATGTTTGTTAATAA+AGG | - | chr3_4:66617069-66617088 | None:intergenic | 20.0% |
| !! | CTTTATTAACAAACATGAAT+AGG | + | chr3_4:66617067-66617086 | Msa0515380:exon | 20.0% |
| !! | TTATGAATAGAAGAAGAATT+TGG | - | chr3_4:66617306-66617325 | None:intergenic | 20.0% |
| !!! | ATATTAATGATTTTACCTTC+TGG | - | chr3_4:66617420-66617439 | None:intergenic | 20.0% |
| !! | ATTAATTAAAAAGAAGTTGG+TGG | + | chr3_4:66617717-66617736 | Msa0515380:intron | 20.0% |
| !!! | ATTAGTTGTTGATATTTTCA+TGG | + | chr3_4:66617785-66617804 | Msa0515380:intron | 20.0% |
| !!! | TAATTTCTTTTCATTATTGG+AGG | + | chr3_4:66617836-66617855 | Msa0515380:intron | 20.0% |
| !!! | CATTGAACTATTTTTAATAG+TGG | - | chr3_4:66618181-66618200 | None:intergenic | 20.0% |
| !!! | TTGTCTATGTATTTTTTACT+TGG | + | chr3_4:66618707-66618726 | Msa0515380:intron | 20.0% |
| !! | AATTCCATAACCAAATTAAT+TGG | - | chr3_4:66619163-66619182 | None:intergenic | 20.0% |
| ! | GAAACTAAAATAGAAGAGTA+TGG | - | chr3_4:66616887-66616906 | None:intergenic | 25.0% |
| ! | AACTAATTTAAATGGATGGA+TGG | - | chr3_4:66616949-66616968 | None:intergenic | 25.0% |
| ! | TGTGAACTAATTTAAATGGA+TGG | - | chr3_4:66616953-66616972 | None:intergenic | 25.0% |
| ! | GTGATGTGAACTAATTTAAA+TGG | - | chr3_4:66616957-66616976 | None:intergenic | 25.0% |
| ! | AAAAAGGAAAGAAAGAAGAA+GGG | - | chr3_4:66617006-66617025 | None:intergenic | 25.0% |
| ! | AAGAAAGTGAATTGTGAAAA+AGG | - | chr3_4:66617022-66617041 | None:intergenic | 25.0% |
| ! | TTAACAAACATGAATAGGAA+TGG | + | chr3_4:66617072-66617091 | Msa0515380:exon | 25.0% |
| !! | ATTCATAAGATCTTTGCTTT+TGG | + | chr3_4:66617318-66617337 | Msa0515380:CDS | 25.0% |
| ! | AAAGATTAATCTTTCGAATC+AGG | - | chr3_4:66617646-66617665 | None:intergenic | 25.0% |
| ! | ATTCGAAAGATTAATCTTTG+CGG | + | chr3_4:66617647-66617666 | Msa0515380:intron | 25.0% |
| !! | TTGTTGATATTTTCATGGTT+TGG | + | chr3_4:66617790-66617809 | Msa0515380:intron | 25.0% |
| ! | TATTTCAAGATTATGGTATG+TGG | + | chr3_4:66618081-66618100 | Msa0515380:intron | 25.0% |
| ! | ACTAGTAAATCAAATGAGAT+AGG | + | chr3_4:66618262-66618281 | Msa0515380:intron | 25.0% |
| ! | TTCATATCAATCAAGTTTGA+AGG | + | chr3_4:66618818-66618837 | Msa0515380:CDS | 25.0% |
| ! | CTATTATTTGTTTGTGTCTT+TGG | + | chr3_4:66619205-66619224 | Msa0515380:three_prime_UTR | 25.0% |
| ! | CTACTATTCATATTGACATA+TGG | + | chr3_4:66619312-66619331 | Msa0515380:three_prime_UTR | 25.0% |
| AATTTAAATGGATGGATGGA+AGG | - | chr3_4:66616945-66616964 | None:intergenic | 30.0% | |
| GAAAAAGGAAAGAAAGAAGA+AGG | - | chr3_4:66617007-66617026 | None:intergenic | 30.0% | |
| ACATGAATAGGAATGGATAT+AGG | + | chr3_4:66617079-66617098 | Msa0515380:exon | 30.0% | |
| CATGAATAGGAATGGATATA+GGG | + | chr3_4:66617080-66617099 | Msa0515380:exon | 30.0% | |
| TAGAAGATGAAGAAGAAGAA+CGG | - | chr3_4:66617227-66617246 | None:intergenic | 30.0% | |
| !!! | TTGTGAACTAGCAACTTTTT+TGG | - | chr3_4:66617253-66617272 | None:intergenic | 30.0% |
| TGAATAGAAGAAGAATTTGG+TGG | - | chr3_4:66617303-66617322 | None:intergenic | 30.0% | |
| !! | AAAAAGAAGTTGGTGGAAAA+AGG | + | chr3_4:66617724-66617743 | Msa0515380:intron | 30.0% |
| !!! | TGATATTTTCATGGTTTGGT+TGG | + | chr3_4:66617794-66617813 | Msa0515380:intron | 30.0% |
| !!! | GATATTTTCATGGTTTGGTT+GGG | + | chr3_4:66617795-66617814 | Msa0515380:intron | 30.0% |
| !!! | ATATTTTCATGGTTTGGTTG+GGG | + | chr3_4:66617796-66617815 | Msa0515380:intron | 30.0% |
| ! | TTGTGATGATGACGAAATTA+AGG | + | chr3_4:66617912-66617931 | Msa0515380:intron | 30.0% |
| ACTAGTAGTAGTAAGACATA+AGG | + | chr3_4:66617949-66617968 | Msa0515380:intron | 30.0% | |
| TAGTAGTAAGACATAAGGAT+GGG | + | chr3_4:66617954-66617973 | Msa0515380:intron | 30.0% | |
| GAACATTATTACTATGACAC+AGG | + | chr3_4:66618051-66618070 | Msa0515380:intron | 30.0% | |
| AAGATTATGGTATGTGGATT+TGG | + | chr3_4:66618087-66618106 | Msa0515380:intron | 30.0% | |
| ATTAGGGTACACAACTAATT+TGG | + | chr3_4:66618116-66618135 | Msa0515380:intron | 30.0% | |
| TCAAATTGTATCAAATCCGT+CGG | + | chr3_4:66618487-66618506 | Msa0515380:intron | 30.0% | |
| ! | TCATTAGATTTTGCTTTGTG+TGG | + | chr3_4:66618735-66618754 | Msa0515380:intron | 30.0% |
| ! | CATTAGATTTTGCTTTGTGT+GGG | + | chr3_4:66618736-66618755 | Msa0515380:intron | 30.0% |
| ATTCTCATTTCTCATTCCAA+GGG | - | chr3_4:66618768-66618787 | None:intergenic | 30.0% | |
| TCAATCAAGTTTGAAGGAAA+TGG | + | chr3_4:66618824-66618843 | Msa0515380:CDS | 30.0% | |
| CAATCAAGTTTGAAGGAAAT+GGG | + | chr3_4:66618825-66618844 | Msa0515380:CDS | 30.0% | |
| AATCAAGTTTGAAGGAAATG+GGG | + | chr3_4:66618826-66618845 | Msa0515380:CDS | 30.0% | |
| GTCTACTATACTTTATTCCA+TGG | - | chr3_4:66619125-66619144 | None:intergenic | 30.0% | |
| GAAAGTGACACCAATTAATT+TGG | + | chr3_4:66619150-66619169 | Msa0515380:three_prime_UTR | 30.0% | |
| ! | GACACCAATTAATTTGGTTA+TGG | + | chr3_4:66619156-66619175 | Msa0515380:three_prime_UTR | 30.0% |
| CACCAACAACTACTTGTTTA+GGG | - | chr3_4:66617131-66617150 | None:intergenic | 35.0% | |
| ACACCAACAACTACTTGTTT+AGG | - | chr3_4:66617132-66617151 | None:intergenic | 35.0% | |
| GCCTTTCATTCAAGCATAAA+GGG | - | chr3_4:66617158-66617177 | None:intergenic | 35.0% | |
| AGCCTTTCATTCAAGCATAA+AGG | - | chr3_4:66617159-66617178 | None:intergenic | 35.0% | |
| GAATGAAAGGCTTCTTCTAT+TGG | + | chr3_4:66617167-66617186 | Msa0515380:CDS | 35.0% | |
| !!! | TGAACTAGCAACTTTTTTGG+AGG | - | chr3_4:66617250-66617269 | None:intergenic | 35.0% |
| ! | ATGATTTTACCTTCTGGACT+AGG | - | chr3_4:66617414-66617433 | None:intergenic | 35.0% |
| TCGTAATCATCTAACACTCT+TGG | - | chr3_4:66617517-66617536 | None:intergenic | 35.0% | |
| GAATCAGGCATGATCATATT+CGG | - | chr3_4:66617631-66617650 | None:intergenic | 35.0% | |
| GTAGTAGTAAGACATAAGGA+TGG | + | chr3_4:66617953-66617972 | Msa0515380:intron | 35.0% | |
| ! | TTGGGTCATTGTTTTCTTCT+TGG | + | chr3_4:66617992-66618011 | Msa0515380:intron | 35.0% |
| ! | TTATGGTATGTGGATTTGGT+AGG | + | chr3_4:66618091-66618110 | Msa0515380:intron | 35.0% |
| ! | TATGGTATGTGGATTTGGTA+GGG | + | chr3_4:66618092-66618111 | Msa0515380:intron | 35.0% |
| GTGTATTAGATGCTGACATA+AGG | - | chr3_4:66618448-66618467 | None:intergenic | 35.0% | |
| TAGTAGCTGAGCAGAAAAAT+TGG | + | chr3_4:66618521-66618540 | Msa0515380:intron | 35.0% | |
| AGTAGCTGAGCAGAAAAATT+GGG | + | chr3_4:66618522-66618541 | Msa0515380:intron | 35.0% | |
| TTACTAACAGTGCAACTAGT+TGG | + | chr3_4:66618621-66618640 | Msa0515380:intron | 35.0% | |
| TACTAACAGTGCAACTAGTT+GGG | + | chr3_4:66618622-66618641 | Msa0515380:intron | 35.0% | |
| CATTCTCATTTCTCATTCCA+AGG | - | chr3_4:66618769-66618788 | None:intergenic | 35.0% | |
| GTTCTTCTTGCAATTCTCTA+GGG | - | chr3_4:66618894-66618913 | None:intergenic | 35.0% | |
| AAAGAGAAAGAAGAAGACCA+TGG | + | chr3_4:66619105-66619124 | Msa0515380:CDS | 35.0% | |
| ! | ATAGCAAAGTGATGATGATG+AGG | - | chr3_4:66619232-66619251 | None:intergenic | 35.0% |
| TTAGGGTGGAAATTGCAACA+TGG | - | chr3_4:66617114-66617133 | None:intergenic | 40.0% | |
| CAACAACTACTTGTTTAGGG+TGG | - | chr3_4:66617128-66617147 | None:intergenic | 40.0% | |
| CACCCTAAACAAGTAGTTGT+TGG | + | chr3_4:66617126-66617145 | Msa0515380:CDS | 40.0% | |
| GCCCTTTATGCTTGAATGAA+AGG | + | chr3_4:66617154-66617173 | Msa0515380:CDS | 40.0% | |
| ! | CTTCTATTGGCTGCAAAACA+AGG | + | chr3_4:66617180-66617199 | Msa0515380:CDS | 40.0% |
| ! | TATTGGCTGCAAAACAAGGT+CGG | + | chr3_4:66617184-66617203 | Msa0515380:CDS | 40.0% |
| AAGAAGAACGGTGGTTATGA+TGG | - | chr3_4:66617215-66617234 | None:intergenic | 40.0% | |
| AAGATGAAGAAGAAGAACGG+TGG | - | chr3_4:66617224-66617243 | None:intergenic | 40.0% | |
| !! | ATTTGGTGGCTTTGTGTGTA+CGG | - | chr3_4:66617289-66617308 | None:intergenic | 40.0% |
| TTAATCTTTGCGGTCTCATG+TGG | + | chr3_4:66617657-66617676 | Msa0515380:intron | 40.0% | |
| CATGTTTGAATGTCTTCACG+TGG | + | chr3_4:66617880-66617899 | Msa0515380:intron | 40.0% | |
| ATGTCTTCACGTGGAAGATT+AGG | + | chr3_4:66617889-66617908 | Msa0515380:intron | 40.0% | |
| AGGATGGGAAAGAAAGCTTT+CGG | + | chr3_4:66617969-66617988 | Msa0515380:intron | 40.0% | |
| ! | TCATTGTTTTCTTCTTGGCG+TGG | + | chr3_4:66617997-66618016 | Msa0515380:intron | 40.0% |
| ! | TGTGGATTTGGTAGGGAATT+AGG | + | chr3_4:66618099-66618118 | Msa0515380:intron | 40.0% |
| ! | GTGGATTTGGTAGGGAATTA+GGG | + | chr3_4:66618100-66618119 | Msa0515380:intron | 40.0% |
| ACTAACAGTGCAACTAGTTG+GGG | + | chr3_4:66618623-66618642 | Msa0515380:intron | 40.0% | |
| GGTTCTTCTTGCAATTCTCT+AGG | - | chr3_4:66618895-66618914 | None:intergenic | 40.0% | |
| GAATTGCAAGAAGAACCATG+AGG | + | chr3_4:66618898-66618917 | Msa0515380:CDS | 40.0% | |
| ! | TGGTCTCTAATTTGTCCTCA+TGG | - | chr3_4:66618916-66618935 | None:intergenic | 40.0% |
| ! | TTTTCTTCCACCTTATGAGC+TGG | - | chr3_4:66619006-66619025 | None:intergenic | 40.0% |
| CTCATAAGGTGGAAGAAAAC+TGG | + | chr3_4:66619007-66619026 | Msa0515380:CDS | 40.0% | |
| ATAAGGTGGAAGAAAACTGG+AGG | + | chr3_4:66619010-66619029 | Msa0515380:CDS | 40.0% | |
| AAGAACGGTGGTTATGATGG+TGG | - | chr3_4:66617212-66617231 | None:intergenic | 45.0% | |
| TCTCGTCACTGCAAATCTCA+TGG | + | chr3_4:66617363-66617382 | Msa0515380:CDS | 45.0% | |
| GATATCTCTCCTAGTCCAGA+AGG | + | chr3_4:66617402-66617421 | Msa0515380:CDS | 45.0% | |
| !!! | TTTTCATGGTTTGGTTGGGG+AGG | + | chr3_4:66617799-66617818 | Msa0515380:intron | 45.0% |
| TGGGAAAGAAAGCTTTCGGT+TGG | + | chr3_4:66617973-66617992 | Msa0515380:intron | 45.0% | |
| GGGAAAGAAAGCTTTCGGTT+GGG | + | chr3_4:66617974-66617993 | Msa0515380:intron | 45.0% | |
| TACTAATACCATGCTGCCGA+CGG | - | chr3_4:66618506-66618525 | None:intergenic | 45.0% | |
| TTTGTGTGGGAACATACCCT+TGG | + | chr3_4:66618749-66618768 | Msa0515380:intron | 45.0% | |
| ! | CTTCTTGCAATTCTCTAGGG+AGG | - | chr3_4:66618891-66618910 | None:intergenic | 45.0% |
| TGCATGCTCTATCACACTCT+TGG | - | chr3_4:66618936-66618955 | None:intergenic | 45.0% | |
| CAAAGTCACGTGACACATTC+AGG | + | chr3_4:66618954-66618973 | Msa0515380:CDS | 45.0% | |
| ACACATTCAGGTGGAGAAAG+AGG | + | chr3_4:66618966-66618985 | Msa0515380:CDS | 45.0% | |
| TTCAGGTGGAGAAAGAGGAT+TGG | + | chr3_4:66618971-66618990 | Msa0515380:CDS | 45.0% | |
| GTCACATGTTCCAGCTCATA+AGG | + | chr3_4:66618993-66619012 | Msa0515380:CDS | 45.0% | |
| ACATGTTCCAGCTCATAAGG+TGG | + | chr3_4:66618996-66619015 | Msa0515380:CDS | 45.0% | |
| GGAGCAGTGAAAGTCAGAAA+AGG | + | chr3_4:66619064-66619083 | Msa0515380:CDS | 45.0% | |
| CAGTGAAAGTCAGAAAAGGC+TGG | + | chr3_4:66619068-66619087 | Msa0515380:CDS | 45.0% | |
| AAGTCAGAAAAGGCTGGATG+AGG | + | chr3_4:66619074-66619093 | Msa0515380:CDS | 45.0% | |
| !!! | TAATTTTAATTTATACTTTT+TGG | - | chr3_4:66618677-66618696 | None:intergenic | 5.0% |
| ! | GGTTTGGTTGGGGAGGAATT+TGG | + | chr3_4:66617806-66617825 | Msa0515380:intron | 50.0% |
| TATCAAATCCGTCGGCAGCA+TGG | + | chr3_4:66618495-66618514 | Msa0515380:intron | 50.0% | |
| ! | GGAAAAGAGCACGGTCTCAA+AGG | + | chr3_4:66618859-66618878 | Msa0515380:CDS | 50.0% |
| ! | CTTGCAATTCTCTAGGGAGG+AGG | - | chr3_4:66618888-66618907 | None:intergenic | 50.0% |
| AGTCACGTGACACATTCAGG+TGG | + | chr3_4:66618957-66618976 | Msa0515380:CDS | 50.0% | |
| TGTATGCCACGTAGGCAACA+AGG | + | chr3_4:66619033-66619052 | Msa0515380:CDS | 50.0% | |
| CTTCAACCTTGTTGCCTACG+TGG | - | chr3_4:66619042-66619061 | None:intergenic | 50.0% | |
| CACGTAGGCAACAAGGTTGA+AGG | + | chr3_4:66619040-66619059 | Msa0515380:CDS | 50.0% | |
| GTAGGCAACAAGGTTGAAGG+AGG | + | chr3_4:66619043-66619062 | Msa0515380:CDS | 50.0% | |
| AAGGAAATGGGGTAGCCTCG+TGG | + | chr3_4:66618837-66618856 | Msa0515380:CDS | 55.0% | |
| AGGAAATGGGGTAGCCTCGT+GGG | + | chr3_4:66618838-66618857 | Msa0515380:CDS | 55.0% | |
| AGCCTCGTGGGAAAAGAGCA+CGG | + | chr3_4:66618850-66618869 | Msa0515380:CDS | 55.0% | |
| ! | ACTGGAGGTGTATGCCACGT+AGG | + | chr3_4:66619025-66619044 | Msa0515380:CDS | 55.0% |
| ! | GACCGTGCTCTTTTCCCACG+AGG | - | chr3_4:66618855-66618874 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 66616883 | 66619347 | 66616883 | ID=Msa0515380;Name=Msa0515380 |
| chr3_4 | mRNA | 66616883 | 66619347 | 66616883 | ID=Msa0515380-mRNA-1;Parent=Msa0515380;Name=Msa0515380-mRNA-1;_AED=0.01;_eAED=0.01;_QI=198|1|1|1|1|1|2|215|221 |
| chr3_4 | exon | 66616883 | 66617423 | 66616883 | ID=Msa0515380-mRNA-1:exon:17158;Parent=Msa0515380-mRNA-1 |
| chr3_4 | exon | 66618810 | 66619347 | 66618810 | ID=Msa0515380-mRNA-1:exon:17159;Parent=Msa0515380-mRNA-1 |
| chr3_4 | five_prime_UTR | 66616883 | 66617080 | 66616883 | ID=Msa0515380-mRNA-1:five_prime_utr;Parent=Msa0515380-mRNA-1 |
| chr3_4 | CDS | 66617081 | 66617423 | 66617081 | ID=Msa0515380-mRNA-1:cds;Parent=Msa0515380-mRNA-1 |
| chr3_4 | CDS | 66618810 | 66619132 | 66618810 | ID=Msa0515380-mRNA-1:cds;Parent=Msa0515380-mRNA-1 |
| chr3_4 | three_prime_UTR | 66619133 | 66619347 | 66619133 | ID=Msa0515380-mRNA-1:three_prime_utr;Parent=Msa0515380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
