AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0436280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436280 MtrunA17_Chr3g0133221 91.071 280 3 2 1 280 1 258 0.0 512
Msa0436280 MtrunA17_Chr8g0367701 71.667 180 51 0 100 279 90 269 1.90e-98 290
Msa0436280 MtrunA17_Chr7g0251801 47.475 198 94 3 81 277 86 274 4.14e-64 202
Msa0436280 MtrunA17_Chr2g0315771 47.030 202 102 3 82 278 25 226 3.58e-61 193
Msa0436280 MtrunA17_Chr1g0162171 39.623 159 95 1 120 277 62 220 1.34e-43 148
Msa0436280 MtrunA17_Chr6g0481891 38.994 159 96 1 120 277 38 196 2.21e-42 144
Msa0436280 MtrunA17_Chr8g0388871 37.654 162 97 2 119 277 22 182 3.03e-40 138
Msa0436280 MtrunA17_Chr1g0212091 36.413 184 107 3 96 277 43 218 4.02e-40 139
Msa0436280 MtrunA17_Chr1g0212121 35.849 159 101 1 120 277 57 215 5.46e-37 130
Msa0436280 MtrunA17_Chr1g0212171 35.625 160 102 1 119 277 59 218 1.22e-36 130
Msa0436280 MtrunA17_Chr1g0212181 35.583 163 103 2 120 280 57 219 3.61e-35 126
Msa0436280 MtrunA17_Chr1g0212111 43.396 106 59 1 173 277 49 154 3.95e-25 98.6
Msa0436280 MtrunA17_Chr1g0212131 41.071 56 33 0 222 277 6 61 8.15e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436280 AT1G28200.1 72.951 244 57 2 37 280 23 257 2.00e-123 353
Msa0436280 AT1G28200.2 72.951 244 57 2 37 280 23 257 2.00e-123 353
Msa0436280 AT2G22475.1 72.727 198 53 1 83 279 96 293 5.20e-110 320
Msa0436280 AT2G22475.2 72.603 146 39 1 83 227 96 241 9.06e-77 234
Msa0436280 AT4G40100.1 57.789 199 47 4 83 279 55 218 4.90e-73 223
Msa0436280 AT5G13200.1 47.644 191 91 3 84 273 74 256 4.94e-59 189
Msa0436280 AT4G01600.1 42.211 199 108 3 83 277 29 224 1.04e-54 177
Msa0436280 AT4G01600.3 42.135 178 101 1 102 277 8 185 8.12e-52 168
Msa0436280 AT4G01600.2 41.206 199 105 4 83 277 29 219 1.08e-50 166
Msa0436280 AT5G23350.1 34.259 216 133 4 67 277 2 213 6.38e-40 138
Msa0436280 AT5G23360.1 36.875 160 98 2 120 277 47 205 1.13e-38 135
Msa0436280 AT5G23370.1 33.333 219 131 6 67 277 2 213 3.77e-38 134
Msa0436280 AT5G08350.1 33.831 201 116 4 79 277 27 212 4.56e-38 134
Msa0436280 AT5G13200.2 46.479 142 67 3 84 224 74 207 2.36e-37 132

Find 108 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCGTTGTTACTTGTTTC+TGG 0.126004 3_2:-89738225 Msa0436280:three_prime_UTR
CCGTTGACAATCATGAATTT+TGG 0.145817 3_2:-89738468 Msa0436280:CDS
AAATAATAATTTGACGGTTT+TGG 0.155065 3_2:-89742536 Msa0436280:five_prime_UTR
TGAAAGATGTTCTTGGAAAA+TGG 0.239709 3_2:-89741949 Msa0436280:CDS
GAATCAGAGTGTTGGGGTTT+GGG 0.276522 3_2:+89742257 None:intergenic
AGCAAGATCTTCAGCCTTCT+TGG 0.287689 3_2:+89741904 None:intergenic
TTGTGTTGGTGGGTTGGACT+TGG 0.298593 3_2:+89742300 None:intergenic
AGAATCAGAGTGTTGGGGTT+TGG 0.300088 3_2:+89742256 None:intergenic
ACGTCGTTTGGGTCGAGTTT+AGG 0.310396 3_2:+89742203 None:intergenic
TTTAGGATACGGAGCGTAAT+CGG 0.313258 3_2:+89742220 None:intergenic
GGTGGTGGTGCGACGTCGTT+TGG 0.326020 3_2:+89742191 None:intergenic
AAATGTCAATCAGTGCCTTC+AGG 0.326175 3_2:-89742678 Msa0436280:five_prime_UTR
ATATTATTACATTCTAAATC+TGG 0.330201 3_2:-89738175 Msa0436280:three_prime_UTR
TCAATTCAAACCCAAGTTGA+TGG 0.340780 3_2:+89742426 None:intergenic
ATTTAAACATGATAGTTATA+TGG 0.356108 3_2:-89738122 Msa0436280:three_prime_UTR
GATTCGGTGAAAGATGTTCT+TGG 0.357881 3_2:-89741956 Msa0436280:CDS
TGCTACCTCTCCACCTCTGC+TGG 0.362383 3_2:-89740838 Msa0436280:CDS
CTCTTAGCAGAAGTGGGTTC+GGG 0.375941 3_2:+89742077 None:intergenic
GACTCAATGGAGCTATTATA+AGG 0.381490 3_2:-89740731 Msa0436280:intron
GCAGAAGTGGGTTCGGGAAC+TGG 0.387440 3_2:+89742083 None:intergenic
TTAGGATACGGAGCGTAATC+GGG 0.390438 3_2:+89742221 None:intergenic
TACTTCCTTAGTCTAGTTTG+TGG 0.390817 3_2:-89738275 Msa0436280:three_prime_UTR
GGGTTGGCTTTGCTTGTGGA+TGG 0.392668 3_2:+89738517 None:intergenic
AGAGTGTTGGGGTTTGGGAT+TGG 0.396714 3_2:+89742262 None:intergenic
CACCTCTGCTGGACCTGTCA+TGG 0.396719 3_2:-89740827 Msa0436280:CDS
GAAAGATGTTCTTGGAAAAT+GGG 0.402168 3_2:-89741948 Msa0436280:CDS
TGCTCAGGGAACAAAAGTTC+TGG 0.404565 3_2:-89740938 Msa0436280:CDS
ATCAACACAGACCTCATGTT+TGG 0.406142 3_2:+89738346 None:intergenic
ACTCTTAGCAGAAGTGGGTT+CGG 0.407099 3_2:+89742076 None:intergenic
GCAACAGGTGGTGGTGGTGG+TGG 0.410841 3_2:+89742176 None:intergenic
TACTACTCATATTGTTGACT+TGG 0.419934 3_2:+89742363 None:intergenic
TTGTGTTTGTGTTGGTGGGT+TGG 0.423984 3_2:+89742294 None:intergenic
ATTGAGTCTGGTCACCAGTC+TGG 0.437061 3_2:+89740746 None:intergenic
GTGTTTGTGTTTGTGTTGGT+GGG 0.438866 3_2:+89742290 None:intergenic
AAGAAGGCTGAAGATCTTGC+TGG 0.439141 3_2:-89741902 Msa0436280:CDS
GGTTGGCTTTGCTTGTGGAT+GGG 0.441303 3_2:+89738518 None:intergenic
TTCCATAAAACAGTGAAAAC+AGG 0.443896 3_2:-89740994 Msa0436280:intron
TGTGTTTGTGTTTGTGTTGG+TGG 0.453606 3_2:+89742289 None:intergenic
TGCTGTGGGAAGAATTGCTC+AGG 0.454151 3_2:-89740953 Msa0436280:CDS
AGAGTGAGAATCAGAGTGTT+GGG 0.455084 3_2:+89742250 None:intergenic
GGGCATGGTGGTGGCAGCAT+CGG 0.455840 3_2:+89742136 None:intergenic
AGTTCAAAATAATAATTTGA+CGG 0.461591 3_2:-89742542 Msa0436280:five_prime_UTR
TGTGTTGGTGGGTTGGACTT+GGG 0.461657 3_2:+89742301 None:intergenic
TTCAGAGAAAACCATCAACT+TGG 0.467782 3_2:-89742437 Msa0436280:five_prime_UTR
TATAATAGCTCCATTGAGTC+TGG 0.472016 3_2:+89740734 None:intergenic
GTGGGTTCGGGAACTGGTGC+AGG 0.472656 3_2:+89742089 None:intergenic
TGGACTTGGGCTTGAACATG+AGG 0.476251 3_2:+89742314 None:intergenic
GTTTGTGTTTGTGTTTGTGT+TGG 0.477634 3_2:+89742286 None:intergenic
GTAGCAACAGGTGGTGGTGG+TGG 0.480688 3_2:+89742173 None:intergenic
ACTACTCATATTGTTGACTT+GGG 0.480812 3_2:+89742364 None:intergenic
GGGATTAGATTCGGCGGGCA+TGG 0.481538 3_2:+89742121 None:intergenic
ACCTCTGCTGGACCTGTCAT+GGG 0.481952 3_2:-89740826 Msa0436280:CDS
GCAGTCTCGCTGATACACTA+TGG 0.482340 3_2:-89738392 Msa0436280:exon
TCGATCGATTTGTTGTAAGT+TGG 0.489993 3_2:-89738149 Msa0436280:three_prime_UTR
AGATTCGGCGGGCATGGTGG+TGG 0.492264 3_2:+89742127 None:intergenic
CATGGTGGTGGCAGCATCGG+TGG 0.493757 3_2:+89742139 None:intergenic
GCGCGAGATTCAGTAGCAAC+AGG 0.494862 3_2:+89742161 None:intergenic
AGTAGGGTTGGCTTTGCTTG+TGG 0.497012 3_2:+89738513 None:intergenic
GTGGTGGTGCGACGTCGTTT+GGG 0.498600 3_2:+89742192 None:intergenic
ATTGTTGACTTGGGGAGGAT+CGG 0.507858 3_2:+89742373 None:intergenic
AACTGGTGCAGGAGAGACAT+AGG 0.514578 3_2:+89742100 None:intergenic
AATGTCAATCAGTGCCTTCA+GGG 0.516355 3_2:-89742677 Msa0436280:five_prime_UTR
TAGCTCCACAAACTAGACTA+AGG 0.517632 3_2:+89738270 None:intergenic
TCAGTAGCAACAGGTGGTGG+TGG 0.526626 3_2:+89742170 None:intergenic
GAAATTACTCTTAGCAGAAG+TGG 0.529017 3_2:+89742070 None:intergenic
GAAAGATCGTTGAATTGAAG+AGG 0.529234 3_2:-89742570 Msa0436280:five_prime_UTR
GATTCAGTAGCAACAGGTGG+TGG 0.532264 3_2:+89742167 None:intergenic
AGACTGGTGACCAGACTCAA+TGG 0.534492 3_2:-89740744 Msa0436280:CDS
AAATTACTCTTAGCAGAAGT+GGG 0.535463 3_2:+89742071 None:intergenic
AGAGACATAGGGATTAGATT+CGG 0.541864 3_2:+89742112 None:intergenic
TTTGGGTCGAGTTTAGGATA+CGG 0.542371 3_2:+89742209 None:intergenic
TAGCCTAACCTCTGCCCTGA+AGG 0.542482 3_2:+89742663 None:intergenic
CATGACAGGTCCAGCAGAGG+TGG 0.545232 3_2:+89740828 None:intergenic
CTCATATTGTTGACTTGGGG+AGG 0.551649 3_2:+89742368 None:intergenic
ACTGCTCGCAGCTGATGCAA+TGG 0.553859 3_2:+89738544 None:intergenic
TCACCAGTCTGGTAAGAAAG+TGG 0.556592 3_2:+89740757 None:intergenic
GAGAGTGAGAATCAGAGTGT+TGG 0.556618 3_2:+89742249 None:intergenic
TGAACATGAGGTTGAACTTG+AGG 0.558806 3_2:+89742326 None:intergenic
AACCCACTTTCTTACCAGAC+TGG 0.563921 3_2:-89740760 Msa0436280:CDS
GTCAACAATATGAGTAGTAG+TGG 0.564010 3_2:-89742359 Msa0436280:exon
TCAGAGAAAACCATCAACTT+GGG 0.565702 3_2:-89742436 Msa0436280:five_prime_UTR
CCAAAATTCATGATTGTCAA+CGG 0.566250 3_2:+89738468 None:intergenic
GAGTGAGAATCAGAGTGTTG+GGG 0.569409 3_2:+89742251 None:intergenic
ACATAGGGATTAGATTCGGC+GGG 0.570583 3_2:+89742116 None:intergenic
TAGGATACGGAGCGTAATCG+GGG 0.571711 3_2:+89742222 None:intergenic
AATCAGTGCCTTCAGGGCAG+AGG 0.572910 3_2:-89742671 Msa0436280:five_prime_UTR
GTGCCTTCAGGGCAGAGGTT+AGG 0.573375 3_2:-89742666 Msa0436280:five_prime_UTR
ACAGCAGCATCAGCAAAACT+AGG 0.577655 3_2:+89740970 None:intergenic
AAATACAAGACTCCCATGAC+AGG 0.580237 3_2:+89740814 None:intergenic
GACATAGGGATTAGATTCGG+CGG 0.580305 3_2:+89742115 None:intergenic
CAGGTCCAGCAGAGGTGGAG+AGG 0.582547 3_2:+89740833 None:intergenic
ATTAGATTCGGCGGGCATGG+TGG 0.585883 3_2:+89742124 None:intergenic
TTCTCTGAAACGTGAATACG+TGG 0.591351 3_2:+89742451 None:intergenic
AGCTGCTGAAGCTACCAAGA+AGG 0.592291 3_2:-89741918 Msa0436280:CDS
AAAGATGTTCTTGGAAAATG+GGG 0.592681 3_2:-89741947 Msa0436280:CDS
CACCAGTCTGGTAAGAAAGT+GGG 0.607437 3_2:+89740758 None:intergenic
CTACTCATATTGTTGACTTG+GGG 0.609204 3_2:+89742365 None:intergenic
GGAACAAAAGTTCTGGCAGA+AGG 0.613260 3_2:-89740931 Msa0436280:CDS
TTCAGGGCAGAGGTTAGGCT+AGG 0.620632 3_2:-89742661 Msa0436280:five_prime_UTR
ACTGGTGCAGGAGAGACATA+GGG 0.634538 3_2:+89742101 None:intergenic
TCCCATGACAGGTCCAGCAG+AGG 0.644056 3_2:+89740825 None:intergenic
ACAAAAGTTCTGGCAGAAGG+TGG 0.648034 3_2:-89740928 Msa0436280:CDS
AAGATCTTGCTGGAAACATG+TGG 0.657196 3_2:-89741892 Msa0436280:CDS
ACATGAGGTTGAACTTGAGG+AGG 0.662022 3_2:+89742329 None:intergenic
AGGATACGGAGCGTAATCGG+GGG 0.674476 3_2:+89742223 None:intergenic
CGAGATTCAGTAGCAACAGG+TGG 0.675679 3_2:+89742164 None:intergenic
CATGTAGTATACCAAACATG+AGG 0.682970 3_2:-89738357 Msa0436280:three_prime_UTR
GCTGTGGGAAGAATTGCTCA+GGG 0.687709 3_2:-89740952 Msa0436280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTAAATTA+AGG + chr3_2:89738157-89738176 None:intergenic 0.0%
!!! ATTTTAATTAATTTTATAGC+TGG - chr3_2:89739703-89739722 Msa0436280:intron 10.0%
!! AAAAAAAGTTAAAAAAGCAA+CGG - chr3_2:89738186-89738205 Msa0436280:three_prime_UTR 15.0%
!! AGTTCAAAATAATAATTTGA+CGG - chr3_2:89738246-89738265 Msa0436280:three_prime_UTR 15.0%
!! CTTAAATGAATTTCAATAAT+TGG + chr3_2:89738960-89738979 None:intergenic 15.0%
!!! TATTCATAAAATTTTGCTAT+AGG + chr3_2:89740242-89740261 None:intergenic 15.0%
!!! TTTAATTAACATGAGATTTT+TGG - chr3_2:89740416-89740435 Msa0436280:intron 15.0%
!!! TACATGTTTATTTTTTTTGA+AGG - chr3_2:89740727-89740746 Msa0436280:intron 15.0%
!! ACAAAAGGTTATAAAATTTA+GGG + chr3_2:89741127-89741146 None:intergenic 15.0%
!! AACAAAAGGTTATAAAATTT+AGG + chr3_2:89741128-89741147 None:intergenic 15.0%
!! AACAAAGGTTATAAAATTTA+GGG + chr3_2:89741738-89741757 None:intergenic 15.0%
!! AATGTAATCTATTAATCATA+CGG + chr3_2:89742047-89742066 None:intergenic 15.0%
!! ATATTATTACATTCTAAATC+TGG - chr3_2:89742613-89742632 Msa0436280:five_prime_UTR 15.0%
!! ATTTAAACATGATAGTTATA+TGG - chr3_2:89742666-89742685 Msa0436280:five_prime_UTR 15.0%
!!! AAATAATAATTTGACGGTTT+TGG - chr3_2:89738252-89738271 Msa0436280:three_prime_UTR 20.0%
!!! AATAATAATTTGACGGTTTT+GGG - chr3_2:89738253-89738272 Msa0436280:three_prime_UTR 20.0%
!!! CATTTTGATATTTGAATTCA+AGG - chr3_2:89738308-89738327 Msa0436280:three_prime_UTR 20.0%
!! TAATTGGAAGTAAAAGAATT+AGG + chr3_2:89738944-89738963 None:intergenic 20.0%
!! GCTATTCAATAAATATTTCT+TGG - chr3_2:89738979-89738998 Msa0436280:intron 20.0%
!! AATTAGAATAGATTGAATGA+AGG - chr3_2:89739458-89739477 Msa0436280:intron 20.0%
!! ATTAGAATAGATTGAATGAA+GGG - chr3_2:89739459-89739478 Msa0436280:intron 20.0%
!!! TAATCTCTACACTTTTTTAA+TGG + chr3_2:89739538-89739557 None:intergenic 20.0%
!!! ATTAATTTTATAGCTGGAAA+TGG - chr3_2:89739709-89739728 Msa0436280:intron 20.0%
!! TTGTTCTTTAATAACTGATT+TGG - chr3_2:89740114-89740133 Msa0436280:intron 20.0%
!! TAATCATCCAAAATAATTTC+AGG + chr3_2:89740461-89740480 None:intergenic 20.0%
!!! ATAGATTTTAGATGTATCTA+GGG - chr3_2:89740670-89740689 Msa0436280:intron 20.0%
!! TAATTCCTCGAAAAAAATAT+TGG + chr3_2:89740709-89740728 None:intergenic 20.0%
!! ATCTGATTATAACATTTGTT+TGG - chr3_2:89740974-89740993 Msa0436280:CDS 20.0%
!! TCTGATTATAACATTTGTTT+GGG - chr3_2:89740975-89740994 Msa0436280:CDS 20.0%
!!! TACTTTTAATCACAACAAAA+AGG + chr3_2:89741366-89741385 None:intergenic 20.0%
!! CAAGCAATTTATATTAAGAT+TGG - chr3_2:89741433-89741452 Msa0436280:intron 20.0%
!! AGATATATTGTATTGAGAAA+TGG - chr3_2:89741590-89741609 Msa0436280:intron 20.0%
!! CAACAAAGGTTATAAAATTT+AGG + chr3_2:89741739-89741758 None:intergenic 20.0%
!! TTGAGAATAAATGTTATCTT+TGG - chr3_2:89742072-89742091 Msa0436280:intron 20.0%
!!! GTCATATTTTTTCTATTGTT+TGG - chr3_2:89742175-89742194 Msa0436280:CDS 20.0%
!!! TCTGTATAAATTTTTCAGTA+GGG + chr3_2:89742294-89742313 None:intergenic 20.0%
!!! ATCTGTATAAATTTTTCAGT+AGG + chr3_2:89742295-89742314 None:intergenic 20.0%
!!! AATCATGAATTTTGGTTTAT+GGG - chr3_2:89742328-89742347 Msa0436280:CDS 20.0%
!! TAAAGTATCTGCAAAATCAA+AGG + chr3_2:89738812-89738831 None:intergenic 25.0%
!! TTTTGCAGATACTTTAGATT+CGG - chr3_2:89738816-89738835 Msa0436280:intron 25.0%
!! ATTTTTACTTTGTATGTGCA+TGG - chr3_2:89739072-89739091 Msa0436280:intron 25.0%
!!! CACTTATTTTATTCTAGTGT+TGG + chr3_2:89739277-89739296 None:intergenic 25.0%
! CTAATTACGACAAAATTTAG+AGG + chr3_2:89739444-89739463 None:intergenic 25.0%
! TCAGTTATTAAAGAACAAAG+CGG + chr3_2:89740112-89740131 None:intergenic 25.0%
!! TGATTATTTCTCAATACTAG+AGG - chr3_2:89740176-89740195 Msa0436280:intron 25.0%
! ATTAAAAAATCCTCAAATGC+TGG + chr3_2:89740402-89740421 None:intergenic 25.0%
! AAGTAATACGTATCATTGTT+TGG - chr3_2:89740495-89740514 Msa0436280:intron 25.0%
!! CATCTAAAATCTATGAGTAT+TGG + chr3_2:89740664-89740683 None:intergenic 25.0%
!! CATAGATTTTAGATGTATCT+AGG - chr3_2:89740669-89740688 Msa0436280:intron 25.0%
!!! TTTTTTTGAAGGATTTTTCG+AGG - chr3_2:89740738-89740757 Msa0436280:CDS 25.0%
!!! GAACAAGTAGCTATTTTTTT+TGG + chr3_2:89740858-89740877 None:intergenic 25.0%
! CTGATTATAACATTTGTTTG+GGG - chr3_2:89740976-89740995 Msa0436280:CDS 25.0%
! TGATTATAACATTTGTTTGG+GGG - chr3_2:89740977-89740996 Msa0436280:CDS 25.0%
! ACTTTAAACCAAACCAATAT+CGG + chr3_2:89741220-89741239 None:intergenic 25.0%
! TCATATATGTTTCCCAATAT+TGG - chr3_2:89741847-89741866 Msa0436280:intron 25.0%
!! ACATAATTCTTTTGATGTTG+AGG - chr3_2:89741913-89741932 Msa0436280:CDS 25.0%
!! CATAATTCTTTTGATGTTGA+GGG - chr3_2:89741914-89741933 Msa0436280:CDS 25.0%
! GAATAAATGTTATCTTTGGA+TGG - chr3_2:89742076-89742095 Msa0436280:intron 25.0%
!!! TATAAATTTTTCAGTAGGGT+TGG + chr3_2:89742290-89742309 None:intergenic 25.0%
!!! CAATCATGAATTTTGGTTTA+TGG - chr3_2:89742327-89742346 Msa0436280:CDS 25.0%
!!! TTTCATGTTTTTGTGAATTG+AGG + chr3_2:89742475-89742494 None:intergenic 25.0%
!! ACTACTCATATTGTTGACTT+GGG + chr3_2:89738427-89738446 None:intergenic 30.0%
! TACTACTCATATTGTTGACT+TGG + chr3_2:89738428-89738447 None:intergenic 30.0%
AAATTACTCTTAGCAGAAGT+GGG + chr3_2:89738720-89738739 None:intergenic 30.0%
TATCTGCAAAATCAAAGGAT+AGG + chr3_2:89738807-89738826 None:intergenic 30.0%
TGAAAGATGTTCTTGGAAAA+TGG - chr3_2:89738839-89738858 Msa0436280:intron 30.0%
GAAAGATGTTCTTGGAAAAT+GGG - chr3_2:89738840-89738859 Msa0436280:intron 30.0%
AAAGATGTTCTTGGAAAATG+GGG - chr3_2:89738841-89738860 Msa0436280:intron 30.0%
TAGAAAAATAGAGAGAGTTG+AGG - chr3_2:89739346-89739365 Msa0436280:intron 30.0%
CAGAAAATATGCTAGAAACT+AGG - chr3_2:89739381-89739400 Msa0436280:intron 30.0%
AAGTGTAGAGATTAATGAGT+TGG - chr3_2:89739544-89739563 Msa0436280:intron 30.0%
! AGAGATTAATGAGTTGGATA+AGG - chr3_2:89739550-89739569 Msa0436280:intron 30.0%
! AAGCTTTATCCAATTAAGTG+GGG + chr3_2:89739624-89739643 None:intergenic 30.0%
! CAAGCTTTATCCAATTAAGT+GGG + chr3_2:89739625-89739644 None:intergenic 30.0%
AGAAAACACAGAAAGTAAAC+TGG - chr3_2:89739736-89739755 Msa0436280:intron 30.0%
GTCAAAATAGCTCAAATGAA+TGG + chr3_2:89739773-89739792 None:intergenic 30.0%
TTCCATAAAACAGTGAAAAC+AGG - chr3_2:89739794-89739813 Msa0436280:intron 30.0%
GTAATGCAGTATACATATCA+TGG + chr3_2:89740142-89740161 None:intergenic 30.0%
AATGACTCCAACTAAATTTC+CGG + chr3_2:89740297-89740316 None:intergenic 30.0%
! ATTGATATTTGAGGTTCCAA+GGG + chr3_2:89740352-89740371 None:intergenic 30.0%
ACTGACATGATTGATATTTG+AGG + chr3_2:89740361-89740380 None:intergenic 30.0%
!!! GATTTTTGGAATTCGAAGAA+AGG - chr3_2:89740430-89740449 Msa0436280:intron 30.0%
!! TATTTTGGATGATTACCCTT+AGG - chr3_2:89740466-89740485 Msa0436280:intron 30.0%
! ATTTTGGATGATTACCCTTA+GGG - chr3_2:89740467-89740486 Msa0436280:intron 30.0%
GTATTACTTAAGATCCCTAA+GGG + chr3_2:89740484-89740503 None:intergenic 30.0%
! AAATCAAGGATTCCCTTTTA+CGG - chr3_2:89740552-89740571 Msa0436280:intron 30.0%
! TCCAAATTTGAAGTATGAGT+GGG - chr3_2:89740607-89740626 Msa0436280:intron 30.0%
TATTGGACATGTACTAGTAT+CGG + chr3_2:89740647-89740666 None:intergenic 30.0%
! ATTTTAGATGTATCTAGGGA+AGG - chr3_2:89740674-89740693 Msa0436280:intron 30.0%
! TTTTAGATGTATCTAGGGAA+GGG - chr3_2:89740675-89740694 Msa0436280:intron 30.0%
!!! ATGCTCCAATATTTTTTTCG+AGG - chr3_2:89740701-89740720 Msa0436280:intron 30.0%
! TTGGAGTAGTGTTTAAAATG+TGG + chr3_2:89740776-89740795 None:intergenic 30.0%
AAACACTACTCCAATACAAT+TGG - chr3_2:89740782-89740801 Msa0436280:CDS 30.0%
AACACTACTCCAATACAATT+GGG - chr3_2:89740783-89740802 Msa0436280:CDS 30.0%
ATGATGTATCCCAATTGTAT+TGG + chr3_2:89740795-89740814 None:intergenic 30.0%
! TTGTTCAACCTTTTTCTTCA+TGG - chr3_2:89740872-89740891 Msa0436280:CDS 30.0%
GATTATAACATTTGTTTGGG+GGG - chr3_2:89740978-89740997 Msa0436280:CDS 30.0%
ATTATAACATTTGTTTGGGG+GGG - chr3_2:89740979-89740998 Msa0436280:CDS 30.0%
! TAACGTAAACCTACTACTTT+TGG - chr3_2:89741048-89741067 Msa0436280:intron 30.0%
TTAAGGAAACCAAAAGTAGT+AGG + chr3_2:89741060-89741079 None:intergenic 30.0%
! AACCTTTTGTTGATGTAACT+AGG - chr3_2:89741137-89741156 Msa0436280:intron 30.0%
AAGGAACTCTTAAAAACTCA+GGG + chr3_2:89741180-89741199 None:intergenic 30.0%
TAAGGAACTCTTAAAAACTC+AGG + chr3_2:89741181-89741200 None:intergenic 30.0%
TTTAAACCAAACCAATATCG+GGG + chr3_2:89741218-89741237 None:intergenic 30.0%
CTTTAAACCAAACCAATATC+GGG + chr3_2:89741219-89741238 None:intergenic 30.0%
! CATAATTCTTTTGATGTCGA+GGG - chr3_2:89741271-89741290 Msa0436280:intron 30.0%
TATTGAGAAATGGTAAAACG+TGG - chr3_2:89741600-89741619 Msa0436280:intron 30.0%
TTAAGGAAACCAAAAGTAGT+AGG + chr3_2:89741060-89741079 None:intergenic 30.0%
TAACCTTTGTTGATGTAACT+AGG - chr3_2:89741747-89741766 Msa0436280:intron 30.0%
TGGGAAACATATATGAACTA+AGG + chr3_2:89741843-89741862 None:intergenic 30.0%
! TATGTTTCCCAATATTGGTT+TGG - chr3_2:89741852-89741871 Msa0436280:intron 30.0%
CTTTGAACCAAACCAATATT+GGG + chr3_2:89741862-89741881 None:intergenic 30.0%
ACTTTGAACCAAACCAATAT+TGG + chr3_2:89741863-89741882 None:intergenic 30.0%
CATCAAAAGAATTATGTGTC+TGG + chr3_2:89741910-89741929 None:intergenic 30.0%
!! TTTTGATGTTGAGGGTATAA+AGG - chr3_2:89741922-89741941 Msa0436280:CDS 30.0%
AGGATACAATGAGTAAGAAT+GGG + chr3_2:89741993-89742012 None:intergenic 30.0%
GATTAGTGACTACACTTATA+TGG - chr3_2:89742100-89742119 Msa0436280:CDS 30.0%
! AGCTTTTCATCTTATGCATT+AGG - chr3_2:89742213-89742232 Msa0436280:CDS 30.0%
! TTTTCATCTTATGCATTAGG+TGG - chr3_2:89742216-89742235 Msa0436280:CDS 30.0%
CCAAAATTCATGATTGTCAA+CGG + chr3_2:89742323-89742342 None:intergenic 30.0%
!!! GAGCTATTTTAGTATTGTGA+TGG - chr3_2:89742535-89742554 Msa0436280:five_prime_UTR 30.0%
GAAAGATCGTTGAATTGAAG+AGG - chr3_2:89738218-89738237 Msa0436280:three_prime_UTR 35.0%
TTCAGAGAAAACCATCAACT+TGG - chr3_2:89738351-89738370 Msa0436280:three_prime_UTR 35.0%
TCAGAGAAAACCATCAACTT+GGG - chr3_2:89738352-89738371 Msa0436280:three_prime_UTR 35.0%
! TCAATTCAAACCCAAGTTGA+TGG + chr3_2:89738365-89738384 None:intergenic 35.0%
!! CTACTCATATTGTTGACTTG+GGG + chr3_2:89738426-89738445 None:intergenic 35.0%
GTCAACAATATGAGTAGTAG+TGG - chr3_2:89738429-89738448 Msa0436280:CDS 35.0%
GTTTGTGTTTGTGTTTGTGT+TGG + chr3_2:89738505-89738524 None:intergenic 35.0%
AGAGACATAGGGATTAGATT+CGG + chr3_2:89738679-89738698 None:intergenic 35.0%
GAAATTACTCTTAGCAGAAG+TGG + chr3_2:89738721-89738740 None:intergenic 35.0%
TTGTGATCAAGAGAAGATAG+AGG - chr3_2:89739127-89739146 Msa0436280:intron 35.0%
!! TTGTATGTGAAGGAAGTGTT+GGG - chr3_2:89739241-89739260 Msa0436280:intron 35.0%
AAATAAGTGTAGCAGAGATG+AGG - chr3_2:89739288-89739307 Msa0436280:intron 35.0%
ATATGCTAGAAACTAGGCTT+AGG - chr3_2:89739387-89739406 Msa0436280:intron 35.0%
TTTATCCAATTAAGTGGGGT+AGG + chr3_2:89739620-89739639 None:intergenic 35.0%
! CCAAGCTTTATCCAATTAAG+TGG + chr3_2:89739626-89739645 None:intergenic 35.0%
CCACTTAATTGGATAAAGCT+TGG - chr3_2:89739623-89739642 Msa0436280:intron 35.0%
! GACCTGTTTTCACTGTTTTA+TGG + chr3_2:89739799-89739818 None:intergenic 35.0%
!!! GTTTTAAGAAGTTGTTCCTC+TGG + chr3_2:89739923-89739942 None:intergenic 35.0%
TATAATAGCTCCATTGAGTC+TGG + chr3_2:89740057-89740076 None:intergenic 35.0%
GACTCAATGGAGCTATTATA+AGG - chr3_2:89740057-89740076 Msa0436280:intron 35.0%
AAATTTCCGGGACACAAATT+GGG + chr3_2:89740284-89740303 None:intergenic 35.0%
TAAATTTCCGGGACACAAAT+TGG + chr3_2:89740285-89740304 None:intergenic 35.0%
ATGACTCCAACTAAATTTCC+GGG + chr3_2:89740296-89740315 None:intergenic 35.0%
! GATTGATATTTGAGGTTCCA+AGG + chr3_2:89740353-89740372 None:intergenic 35.0%
ACTAATATCACCAGCATTTG+AGG - chr3_2:89740389-89740408 Msa0436280:intron 35.0%
! GGTGCTTCCTGAAATTATTT+TGG - chr3_2:89740451-89740470 Msa0436280:intron 35.0%
CGTATTACTTAAGATCCCTA+AGG + chr3_2:89740485-89740504 None:intergenic 35.0%
AAGGCAACATAACTGAACAT+GGG + chr3_2:89740527-89740546 None:intergenic 35.0%
AAAGGCAACATAACTGAACA+TGG + chr3_2:89740528-89740547 None:intergenic 35.0%
TGTTGCCTTTCTTGAAATCA+AGG - chr3_2:89740538-89740557 Msa0436280:intron 35.0%
GGAATCCTTGATTTCAAGAA+AGG + chr3_2:89740546-89740565 None:intergenic 35.0%
! ACTTCAAATTTGGAGTACCT+GGG + chr3_2:89740601-89740620 None:intergenic 35.0%
! TACTTCAAATTTGGAGTACC+TGG + chr3_2:89740602-89740621 None:intergenic 35.0%
! CTCCAAATTTGAAGTATGAG+TGG - chr3_2:89740606-89740625 Msa0436280:intron 35.0%
ACCCACTCATACTTCAAATT+TGG + chr3_2:89740611-89740630 None:intergenic 35.0%
! ACATGTACTAGTATCGGATA+CGG + chr3_2:89740641-89740660 None:intergenic 35.0%
! GAGTAGTGTTTAAAATGTGG+CGG + chr3_2:89740773-89740792 None:intergenic 35.0%
AGACAACACCATGAAGAAAA+AGG + chr3_2:89740883-89740902 None:intergenic 35.0%
TCGTGATAAACTAAGAAGCA+TGG - chr3_2:89740902-89740921 Msa0436280:CDS 35.0%
! CGTGATAAACTAAGAAGCAT+GGG - chr3_2:89740903-89740922 Msa0436280:CDS 35.0%
AGCAAAGGCTTCTCTTAAAT+AGG - chr3_2:89740937-89740956 Msa0436280:CDS 35.0%
TTATAACATTTGTTTGGGGG+GGG - chr3_2:89740980-89740999 Msa0436280:CDS 35.0%
AGCCTAGTTACATCAACAAA+AGG + chr3_2:89741142-89741161 None:intergenic 35.0%
GGGGAAACATATATGAACTA+AGG + chr3_2:89741199-89741218 None:intergenic 35.0%
CATATATGTTTCCCCGATAT+TGG - chr3_2:89741204-89741223 Msa0436280:intron 35.0%
CATCAAAAGAATTATGCGTC+TGG + chr3_2:89741267-89741286 None:intergenic 35.0%
! GCATAATTCTTTTGATGTCG+AGG - chr3_2:89741270-89741289 Msa0436280:intron 35.0%
GCAAGAATATGATAGGGATT+AGG - chr3_2:89741325-89741344 Msa0436280:intron 35.0%
! TAGCGTAAACCTACTACTTT+TGG - chr3_2:89741661-89741680 Msa0436280:intron 35.0%
AAGGAACTCCTAAAAACTCA+GGG + chr3_2:89741790-89741809 None:intergenic 35.0%
CAGGATACAATGAGTAAGAA+TGG + chr3_2:89741994-89742013 None:intergenic 35.0%
ACTCATTGTATCCTGAATTC+TGG - chr3_2:89741999-89742018 Msa0436280:intron 35.0%
CTCTTTAACTACCAGAATTC+AGG + chr3_2:89742013-89742032 None:intergenic 35.0%
! CCGTTGACAATCATGAATTT+TGG - chr3_2:89742320-89742339 Msa0436280:CDS 35.0%
CATGTAGTATACCAAACATG+AGG - chr3_2:89742431-89742450 Msa0436280:five_prime_UTR 35.0%
! TACTTCCTTAGTCTAGTTTG+TGG - chr3_2:89742513-89742532 Msa0436280:five_prime_UTR 35.0%
! CATTCGTTGTTACTTGTTTC+TGG - chr3_2:89742563-89742582 Msa0436280:five_prime_UTR 35.0%
!! TCGATCGATTTGTTGTAAGT+TGG - chr3_2:89742639-89742658 Msa0436280:five_prime_UTR 35.0%
AAATGTCAATCAGTGCCTTC+AGG - chr3_2:89738110-89738129 Msa0436280:three_prime_UTR 40.0%
AATGTCAATCAGTGCCTTCA+GGG - chr3_2:89738111-89738130 Msa0436280:three_prime_UTR 40.0%
!! TTCTCTGAAACGTGAATACG+TGG + chr3_2:89738340-89738359 None:intergenic 40.0%
TGAACATGAGGTTGAACTTG+AGG + chr3_2:89738465-89738484 None:intergenic 40.0%
! GTGTTTGTGTTTGTGTTGGT+GGG + chr3_2:89738501-89738520 None:intergenic 40.0%
TGTGTTTGTGTTTGTGTTGG+TGG + chr3_2:89738502-89738521 None:intergenic 40.0%
! AGAGTGAGAATCAGAGTGTT+GGG + chr3_2:89738541-89738560 None:intergenic 40.0%
! TTTAGGATACGGAGCGTAAT+CGG + chr3_2:89738571-89738590 None:intergenic 40.0%
! TTTGGGTCGAGTTTAGGATA+CGG + chr3_2:89738582-89738601 None:intergenic 40.0%
!! GATTCGGTGAAAGATGTTCT+TGG - chr3_2:89738832-89738851 Msa0436280:intron 40.0%
AAGATCTTGCTGGAAACATG+TGG - chr3_2:89738896-89738915 Msa0436280:intron 40.0%
TTACTTTGTATGTGCATGGC+TGG - chr3_2:89739076-89739095 Msa0436280:intron 40.0%
TACTTTGTATGTGCATGGCT+GGG - chr3_2:89739077-89739096 Msa0436280:intron 40.0%
AAGATAGAGGCCAATTAGAG+AGG - chr3_2:89739140-89739159 Msa0436280:intron 40.0%
GCAAACACATCCTCTCTAAT+TGG + chr3_2:89739153-89739172 None:intergenic 40.0%
AGAGGATGTGTTTGCATTTC+TGG - chr3_2:89739158-89739177 Msa0436280:intron 40.0%
! GTTGTATGTGAAGGAAGTGT+TGG - chr3_2:89739240-89739259 Msa0436280:intron 40.0%
AGGATCATGTGTTCAATGTG+TGG - chr3_2:89739308-89739327 Msa0436280:intron 40.0%
!!! AACTTTTGAGACTGTACCAG+AGG - chr3_2:89739904-89739923 Msa0436280:intron 40.0%
AAATACAAGACTCCCATGAC+AGG + chr3_2:89739977-89739996 None:intergenic 40.0%
AACAAAGCGGTAACAAGCAA+AGG + chr3_2:89740099-89740118 None:intergenic 40.0%
AATTTCCGGGACACAAATTG+GGG + chr3_2:89740283-89740302 None:intergenic 40.0%
TTGTGTCCCGGAAATTTAGT+TGG - chr3_2:89740287-89740306 Msa0436280:intron 40.0%
AAAATCACACTCTCTTCCCT+TGG - chr3_2:89740333-89740352 Msa0436280:intron 40.0%
GCTGGTGATATTAGTCGTTA+AGG + chr3_2:89740384-89740403 None:intergenic 40.0%
CATGCAAGACTACCGTAAAA+GGG + chr3_2:89740567-89740586 None:intergenic 40.0%
ACATGCAAGACTACCGTAAA+AGG + chr3_2:89740568-89740587 None:intergenic 40.0%
TATAACATTTGTTTGGGGGG+GGG - chr3_2:89740981-89741000 Msa0436280:CDS 40.0%
! ATGTTTCCCCGATATTGGTT+TGG - chr3_2:89741209-89741228 Msa0436280:intron 40.0%
TAGGGAAATGCTAAAGAGTG+CGG - chr3_2:89741543-89741562 Msa0436280:intron 40.0%
CAGCCTAGTTACATCAACAA+AGG + chr3_2:89741143-89741162 None:intergenic 40.0%
CAAGGAACTCCTAAAAACTC+AGG + chr3_2:89741791-89741810 None:intergenic 40.0%
GAATTTGAGAGAGAGATGCA+AGG + chr3_2:89741809-89741828 None:intergenic 40.0%
! ATGTTGAGGGTATAAAGGAG+TGG - chr3_2:89741927-89741946 Msa0436280:CDS 40.0%
AAAGGAGTGGAAGCTAACTA+AGG - chr3_2:89741940-89741959 Msa0436280:CDS 40.0%
GACTACACTTATATGGTGTG+TGG - chr3_2:89742107-89742126 Msa0436280:CDS 40.0%
ATCAACACAGACCTCATGTT+TGG + chr3_2:89742445-89742464 None:intergenic 40.0%
TAGCTCCACAAACTAGACTA+AGG + chr3_2:89742521-89742540 None:intergenic 40.0%
!! ATTGTTGACTTGGGGAGGAT+CGG + chr3_2:89738418-89738437 None:intergenic 45.0%
!! CTCATATTGTTGACTTGGGG+AGG + chr3_2:89738423-89738442 None:intergenic 45.0%
ACATGAGGTTGAACTTGAGG+AGG + chr3_2:89738462-89738481 None:intergenic 45.0%
! TTGTGTTTGTGTTGGTGGGT+TGG + chr3_2:89738497-89738516 None:intergenic 45.0%
!! GAATCAGAGTGTTGGGGTTT+GGG + chr3_2:89738534-89738553 None:intergenic 45.0%
!! AGAATCAGAGTGTTGGGGTT+TGG + chr3_2:89738535-89738554 None:intergenic 45.0%
!! GAGTGAGAATCAGAGTGTTG+GGG + chr3_2:89738540-89738559 None:intergenic 45.0%
GAGAGTGAGAATCAGAGTGT+TGG + chr3_2:89738542-89738561 None:intergenic 45.0%
TTAGGATACGGAGCGTAATC+GGG + chr3_2:89738570-89738589 None:intergenic 45.0%
ACATAGGGATTAGATTCGGC+GGG + chr3_2:89738675-89738694 None:intergenic 45.0%
GACATAGGGATTAGATTCGG+CGG + chr3_2:89738676-89738695 None:intergenic 45.0%
! ACTCTTAGCAGAAGTGGGTT+CGG + chr3_2:89738715-89738734 None:intergenic 45.0%
AGCAAGATCTTCAGCCTTCT+TGG + chr3_2:89738887-89738906 None:intergenic 45.0%
AAGAAGGCTGAAGATCTTGC+TGG - chr3_2:89738886-89738905 Msa0436280:intron 45.0%
ACTTTGTATGTGCATGGCTG+GGG - chr3_2:89739078-89739097 Msa0436280:intron 45.0%
ACCTGCGATGTTGTATGTGA+AGG - chr3_2:89739231-89739250 Msa0436280:intron 45.0%
TCCTTCACATACAACATCGC+AGG + chr3_2:89739235-89739254 None:intergenic 45.0%
GAAACTAGGCTTAGGTGCTT+TGG - chr3_2:89739395-89739414 Msa0436280:intron 45.0%
ATTAAGTGGGGTAGGCTACA+TGG + chr3_2:89739612-89739631 None:intergenic 45.0%
TGTAGCCTACCCCACTTAAT+TGG - chr3_2:89739612-89739631 Msa0436280:intron 45.0%
ACAGCAGCATCAGCAAAACT+AGG + chr3_2:89739821-89739840 None:intergenic 45.0%
!! TAGTTTTGCTGATGCTGCTG+TGG - chr3_2:89739820-89739839 Msa0436280:intron 45.0%
! AGTTTTGCTGATGCTGCTGT+GGG - chr3_2:89739821-89739840 Msa0436280:intron 45.0%
TGCTCAGGGAACAAAAGTTC+TGG - chr3_2:89739850-89739869 Msa0436280:intron 45.0%
! GGAACAAAAGTTCTGGCAGA+AGG - chr3_2:89739857-89739876 Msa0436280:intron 45.0%
! ACAAAAGTTCTGGCAGAAGG+TGG - chr3_2:89739860-89739879 Msa0436280:intron 45.0%
AACCCACTTTCTTACCAGAC+TGG - chr3_2:89740028-89740047 Msa0436280:intron 45.0%
CACCAGTCTGGTAAGAAAGT+GGG + chr3_2:89740033-89740052 None:intergenic 45.0%
TCACCAGTCTGGTAAGAAAG+TGG + chr3_2:89740034-89740053 None:intergenic 45.0%
TAAACCCCCAATTTGTGTCC+CGG - chr3_2:89740275-89740294 Msa0436280:intron 45.0%
ATTTCCGGGACACAAATTGG+GGG + chr3_2:89740282-89740301 None:intergenic 45.0%
TGCATGTTACCTATGAACCC+AGG - chr3_2:89740581-89740600 Msa0436280:intron 45.0%
! TTTGGAGTACCTGGGTTCAT+AGG + chr3_2:89740593-89740612 None:intergenic 45.0%
TGGTAGAGAAAGACTGTACG+AGG + chr3_2:89740838-89740857 None:intergenic 45.0%
TGGGCAACTGAATAGAGCAA+AGG - chr3_2:89740922-89740941 Msa0436280:CDS 45.0%
ATAACATTTGTTTGGGGGGG+GGG - chr3_2:89740982-89741001 Msa0436280:CDS 45.0%
AACAAGTGCCCTAAGGGTTA+GGG + chr3_2:89741097-89741116 None:intergenic 45.0%
TAACAAGTGCCCTAAGGGTT+AGG + chr3_2:89741098-89741117 None:intergenic 45.0%
CATGCTAACAAGTGCCCTAA+GGG + chr3_2:89741103-89741122 None:intergenic 45.0%
TCATGCTAACAAGTGCCCTA+AGG + chr3_2:89741104-89741123 None:intergenic 45.0%
ATTCTTGCAAGATGTGTGCG+AGG - chr3_2:89741302-89741321 Msa0436280:intron 45.0%
TTCTTGCAAGATGTGTGCGA+GGG - chr3_2:89741303-89741322 Msa0436280:intron 45.0%
TGCGAGGGCAAGAATATGAT+AGG - chr3_2:89741318-89741337 Msa0436280:intron 45.0%
GCGAGGGCAAGAATATGATA+GGG - chr3_2:89741319-89741338 Msa0436280:intron 45.0%
TAACAAGTGCCCTAAGGGTT+GGG + chr3_2:89741098-89741117 None:intergenic 45.0%
CATGCTAACAAGTGCCCTAA+GGG + chr3_2:89741103-89741122 None:intergenic 45.0%
TCATGCTAACAAGTGCCCTA+AGG + chr3_2:89741104-89741123 None:intergenic 45.0%
! AGCTCAAGCCCTGAGTTTTT+AGG - chr3_2:89741169-89741188 Msa0436280:intron 45.0%
GAGTGGAAGCTAACTAAGGT+GGG - chr3_2:89741944-89741963 Msa0436280:CDS 45.0%
!!! ATATTTTTATAAATATTGAT+TGG - chr3_2:89741385-89741404 Msa0436280:intron 5.0%
!! AAAATAATATATTAAACTTT+AGG - chr3_2:89741524-89741543 Msa0436280:intron 5.0%
!! AAATAATATATTAAACTTTA+GGG - chr3_2:89741525-89741544 Msa0436280:intron 5.0%
TGGACTTGGGCTTGAACATG+AGG + chr3_2:89738477-89738496 None:intergenic 50.0%
!! TGTGTTGGTGGGTTGGACTT+GGG + chr3_2:89738490-89738509 None:intergenic 50.0%
!! TTGTGTTGGTGGGTTGGACT+TGG + chr3_2:89738491-89738510 None:intergenic 50.0%
!! AGAGTGTTGGGGTTTGGGAT+TGG + chr3_2:89738529-89738548 None:intergenic 50.0%
TAGGATACGGAGCGTAATCG+GGG + chr3_2:89738569-89738588 None:intergenic 50.0%
ACGTCGTTTGGGTCGAGTTT+AGG + chr3_2:89738588-89738607 None:intergenic 50.0%
GATTCAGTAGCAACAGGTGG+TGG + chr3_2:89738624-89738643 None:intergenic 50.0%
CGAGATTCAGTAGCAACAGG+TGG + chr3_2:89738627-89738646 None:intergenic 50.0%
ACTGGTGCAGGAGAGACATA+GGG + chr3_2:89738690-89738709 None:intergenic 50.0%
AACTGGTGCAGGAGAGACAT+AGG + chr3_2:89738691-89738710 None:intergenic 50.0%
! CTCTTAGCAGAAGTGGGTTC+GGG + chr3_2:89738714-89738733 None:intergenic 50.0%
AGCTGCTGAAGCTACCAAGA+AGG - chr3_2:89738870-89738889 Msa0436280:intron 50.0%
ACTAGGCTTAGGTGCTTTGG+AGG - chr3_2:89739398-89739417 Msa0436280:intron 50.0%
TGCTGTGGGAAGAATTGCTC+AGG - chr3_2:89739835-89739854 Msa0436280:intron 50.0%
GCTGTGGGAAGAATTGCTCA+GGG - chr3_2:89739836-89739855 Msa0436280:intron 50.0%
ATTGAGTCTGGTCACCAGTC+TGG + chr3_2:89740045-89740064 None:intergenic 50.0%
AGACTGGTGACCAGACTCAA+TGG - chr3_2:89740044-89740063 Msa0436280:intron 50.0%
TAACATTTGTTTGGGGGGGG+GGG - chr3_2:89740983-89741002 Msa0436280:CDS 50.0%
ACAAGTGCCCTAAGGGTTAG+GGG + chr3_2:89741096-89741115 None:intergenic 50.0%
! TGCTAAAGAGTGCGGAGCAT+TGG - chr3_2:89741551-89741570 Msa0436280:intron 50.0%
CTAACAAGTGCCCTAAGGGT+TGG + chr3_2:89741099-89741118 None:intergenic 50.0%
GGAGTGGAAGCTAACTAAGG+TGG - chr3_2:89741943-89741962 Msa0436280:CDS 50.0%
!! GGTTGGCTTTGCTTGTGGAT+GGG + chr3_2:89742273-89742292 None:intergenic 50.0%
!! AGTAGGGTTGGCTTTGCTTG+TGG + chr3_2:89742278-89742297 None:intergenic 50.0%
GCAGTCTCGCTGATACACTA+TGG - chr3_2:89742396-89742415 Msa0436280:five_prime_UTR 50.0%
AATCAGTGCCTTCAGGGCAG+AGG - chr3_2:89738117-89738136 Msa0436280:three_prime_UTR 55.0%
TAGCCTAACCTCTGCCCTGA+AGG + chr3_2:89738128-89738147 None:intergenic 55.0%
TTCAGGGCAGAGGTTAGGCT+AGG - chr3_2:89738127-89738146 Msa0436280:three_prime_UTR 55.0%
AGGATACGGAGCGTAATCGG+GGG + chr3_2:89738568-89738587 None:intergenic 55.0%
! TCAGTAGCAACAGGTGGTGG+TGG + chr3_2:89738621-89738640 None:intergenic 55.0%
GCGCGAGATTCAGTAGCAAC+AGG + chr3_2:89738630-89738649 None:intergenic 55.0%
ATTAGATTCGGCGGGCATGG+TGG + chr3_2:89738667-89738686 None:intergenic 55.0%
!! GGCTTAGGTGCTTTGGAGGT+TGG - chr3_2:89739402-89739421 Msa0436280:intron 55.0%
ACCTCTGCTGGACCTGTCAT+GGG - chr3_2:89739962-89739981 Msa0436280:intron 55.0%
!! AGACTGTACGAGGAGCACTG+AGG + chr3_2:89740828-89740847 None:intergenic 55.0%
! GGGGCTTAGGGCACTTGTTA+AGG + chr3_2:89741077-89741096 None:intergenic 55.0%
CCCTAAGGGTTAGGGGCTTA+GGG + chr3_2:89741089-89741108 None:intergenic 55.0%
CCCTAAGCCCCTAACCCTTA+GGG - chr3_2:89741086-89741105 Msa0436280:intron 55.0%
ACTGCTCGCAGCTGATGCAA+TGG + chr3_2:89742247-89742266 None:intergenic 55.0%
!! GGGTTGGCTTTGCTTGTGGA+TGG + chr3_2:89742274-89742293 None:intergenic 55.0%
GTGCCTTCAGGGCAGAGGTT+AGG - chr3_2:89738122-89738141 Msa0436280:three_prime_UTR 60.0%
! GTGGTGGTGCGACGTCGTTT+GGG + chr3_2:89738599-89738618 None:intergenic 60.0%
!! GTAGCAACAGGTGGTGGTGG+TGG + chr3_2:89738618-89738637 None:intergenic 60.0%
GGGATTAGATTCGGCGGGCA+TGG + chr3_2:89738670-89738689 None:intergenic 60.0%
! GCAGAAGTGGGTTCGGGAAC+TGG + chr3_2:89738708-89738727 None:intergenic 60.0%
TGCTACCTCTCCACCTCTGC+TGG - chr3_2:89739950-89739969 Msa0436280:intron 60.0%
CATGACAGGTCCAGCAGAGG+TGG + chr3_2:89739963-89739982 None:intergenic 60.0%
CACCTCTGCTGGACCTGTCA+TGG - chr3_2:89739961-89739980 Msa0436280:intron 60.0%
TCCCATGACAGGTCCAGCAG+AGG + chr3_2:89739966-89739985 None:intergenic 60.0%
GCCCTAAGCCCCTAACCCTT+AGG - chr3_2:89741085-89741104 Msa0436280:intron 60.0%
GCCCTAAGGGTTAGGGGCTT+AGG + chr3_2:89741090-89741109 None:intergenic 60.0%
! TGGGCGTAGGGCGCTTGTTA+AGG + chr3_2:89741690-89741709 None:intergenic 60.0%
TGCCCTAAGGGTTGGGCGTA+GGG + chr3_2:89741702-89741721 None:intergenic 60.0%
! GGTGGTGGTGCGACGTCGTT+TGG + chr3_2:89738600-89738619 None:intergenic 65.0%
!! GCAACAGGTGGTGGTGGTGG+TGG + chr3_2:89738615-89738634 None:intergenic 65.0%
!! CATGGTGGTGGCAGCATCGG+TGG + chr3_2:89738652-89738671 None:intergenic 65.0%
!! GGGCATGGTGGTGGCAGCAT+CGG + chr3_2:89738655-89738674 None:intergenic 65.0%
AGATTCGGCGGGCATGGTGG+TGG + chr3_2:89738664-89738683 None:intergenic 65.0%
GTGGGTTCGGGAACTGGTGC+AGG + chr3_2:89738702-89738721 None:intergenic 65.0%
CAGGTCCAGCAGAGGTGGAG+AGG + chr3_2:89739958-89739977 None:intergenic 65.0%
CGCCCTACGCCCAACCCTTA+GGG - chr3_2:89741697-89741716 Msa0436280:intron 65.0%
GTGCCCTAAGGGTTGGGCGT+AGG + chr3_2:89741703-89741722 None:intergenic 65.0%
GCGCCCTACGCCCAACCCTT+AGG - chr3_2:89741696-89741715 Msa0436280:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 89738096 89742714 89738096 ID=Msa0436280;Name=Msa0436280
chr3_2 mRNA 89738096 89742714 89738096 ID=Msa0436280-mRNA-1;Parent=Msa0436280;Name=Msa0436280-mRNA-1;_AED=0.03;_eAED=0.03;_QI=342|1|1|1|1|1|4|306|280
chr3_2 exon 89738096 89738575 89738096 ID=Msa0436280-mRNA-1:exon:26671;Parent=Msa0436280-mRNA-1
chr3_2 exon 89740732 89741003 89740732 ID=Msa0436280-mRNA-1:exon:26670;Parent=Msa0436280-mRNA-1
chr3_2 exon 89741885 89741986 89741885 ID=Msa0436280-mRNA-1:exon:26669;Parent=Msa0436280-mRNA-1
chr3_2 exon 89742078 89742714 89742078 ID=Msa0436280-mRNA-1:exon:26668;Parent=Msa0436280-mRNA-1
chr3_2 five_prime_UTR 89742373 89742714 89742373 ID=Msa0436280-mRNA-1:five_prime_utr;Parent=Msa0436280-mRNA-1
chr3_2 CDS 89742078 89742372 89742078 ID=Msa0436280-mRNA-1:cds;Parent=Msa0436280-mRNA-1
chr3_2 CDS 89741885 89741986 89741885 ID=Msa0436280-mRNA-1:cds;Parent=Msa0436280-mRNA-1
chr3_2 CDS 89740732 89741003 89740732 ID=Msa0436280-mRNA-1:cds;Parent=Msa0436280-mRNA-1
chr3_2 CDS 89738402 89738575 89738402 ID=Msa0436280-mRNA-1:cds;Parent=Msa0436280-mRNA-1
chr3_2 three_prime_UTR 89738096 89738401 89738096 ID=Msa0436280-mRNA-1:three_prime_utr;Parent=Msa0436280-mRNA-1
Gene Sequence

>Msa0436280

ATGAGTAGTAGTGGTGATCAACCTCCTCAAGTTCAACCTCATGTTCAAGCCCAAGTCCAACCCACCAACACAAACACAAACACAAACACCAATCCCAAACCCCAACACTCTGATTCTCACTCTCACACCCCCGATTACGCTCCGTATCCTAAACTCGACCCAAACGACGTCGCACCACCACCACCACCACCTGTTGCTACTGAATCTCGCGCCACCGATGCTGCCACCACCATGCCCGCCGAATCTAATCCCTATGTCTCTCCTGCACCAGTTCCCGAACCCACTTCTGCTAAGAATACTTTAGATTCGGTGAAAGATGTTCTTGGAAAATGGGGTAAGAAAGCTGCTGAAGCTACCAAGAAGGCTGAAGATCTTGCTGGAAACATGTGGCAACACTTGAAAACAGGTCCTAGTTTTGCTGATGCTGCTGTGGGAAGAATTGCTCAGGGAACAAAAGTTCTGGCAGAAGGTGGCTACGAGAAGATCTTTAGACAAACTTTTGAGACTGTACCAGAGGAACAACTTCTTAAAACATATGCATGCTACCTCTCCACCTCTGCTGGACCTGTCATGGGAGTCTTGTATTTGTCAACTGCTAAGCTCGCATTCTGTAGCGACAACCCACTTTCTTACCAGACTGGTGACCAGACTCAATGGAGCTATTATAAGGTGGTCATTCCATTGCATCAGCTGCGAGCAGTGAACCCATCCACAAGCAAAGCCAACCCTACTGAAAAATTTATACAGATTATCTCCGTTGACAATCATGAATTTTGGTTTATGGGCTTTGTGTACTACGACAGCGCTGTTAAACATATTCAAGAAGCATTGCAGTCTCGCTGA

Protein sequence

>Msa0436280

MSSSGDQPPQVQPHVQAQVQPTNTNTNTNTNPKPQHSDSHSHTPDYAPYPKLDPNDVAPPPPPPVATESRATDAATTMPAESNPYVSPAPVPEPTSAKNTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLLKTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQTGDQTQWSYYKVVIPLHQLRAVNPSTSKANPTEKFIQIISVDNHEFWFMGFVYYDSAVKHIQEALQSR*