Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517060 | XP_004502789.1 | 92.395 | 263 | 20 | 0 | 1 | 263 | 1 | 263 | 2.71e-176 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517060 | sp|Q9FLT9|HP302_ARATH | 58.915 | 258 | 97 | 2 | 5 | 262 | 10 | 258 | 7.75e-103 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517060 | A0A1S2YDW5 | 92.395 | 263 | 20 | 0 | 1 | 263 | 1 | 263 | 1.29e-176 | 498 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0262480 | Msa0517060 | 0.826692 | 2.359051e-54 | -8.615850e-47 |
| Msa0280430 | Msa0517060 | 0.812801 | 3.531840e-51 | -8.615850e-47 |
| Msa0300350 | Msa0517060 | 0.823433 | 1.388866e-53 | -8.615850e-47 |
| Msa0517060 | Msa0526540 | 0.802672 | 5.020051e-49 | -8.615850e-47 |
| Msa0517060 | Msa0576940 | 0.811700 | 6.141003e-51 | -8.615850e-47 |
| Msa0517060 | Msa0707390 | 0.805515 | 1.286373e-49 | -8.615850e-47 |
| Msa0517060 | Msa0719420 | 0.808085 | 3.682358e-50 | -8.615850e-47 |
| Msa0517060 | Msa0789680 | 0.807425 | 5.085961e-50 | -8.615850e-47 |
| Msa0517060 | Msa1104210 | 0.800710 | 1.268552e-48 | -8.615850e-47 |
| Msa0517060 | Msa1138870 | 0.811205 | 7.864746e-51 | -8.615850e-47 |
| Msa0517060 | Msa1166870 | 0.844647 | 6.641433e-59 | -8.615850e-47 |
| Msa0517060 | Msa1331710 | 0.813725 | 2.213659e-51 | -8.615850e-47 |
| Msa0517060 | Msa1349570 | 0.844651 | 6.625086e-59 | -8.615850e-47 |
| Msa0517060 | Msa1369190 | 0.816090 | 6.614051e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517060 | MtrunA17_Chr3g0128341 | 93.893 | 262 | 16 | 0 | 1 | 262 | 1 | 262 | 1.32e-175 | 486 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517060 | AT5G24650.1 | 58.915 | 258 | 97 | 2 | 5 | 262 | 10 | 258 | 7.88e-104 | 304 |
| Msa0517060 | AT3G49560.1 | 56.175 | 251 | 101 | 2 | 9 | 259 | 19 | 260 | 2.52e-86 | 259 |
Find 95 sgRNAs with CRISPR-Local
Find 381 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGGAGGTCCTTTGATTC+AGG | 0.192480 | 3_4:-68581653 | Msa0517060:CDS |
| CGTTACAAACACTTAGAAAA+TGG | 0.200233 | 3_4:-68581973 | Msa0517060:CDS |
| GAGAGGAGGAGTGGGGATTG+TGG | 0.234756 | 3_4:-68577258 | Msa0517060:CDS |
| TGCAGCATGGCGGCAGCTTT+TGG | 0.235154 | 3_4:-68579533 | Msa0517060:intron |
| TAGAAAATGGTTTCAAGCTT+TGG | 0.285327 | 3_4:-68581960 | Msa0517060:CDS |
| CGAGTTTGAATTTGGTCAAT+TGG | 0.290268 | 3_4:+68581994 | None:intergenic |
| ATGATATTGCAGGCTCTTGC+TGG | 0.298029 | 3_4:-68581670 | Msa0517060:intron |
| GGCGTTGAAATTCAAGAAAA+TGG | 0.316421 | 3_4:-68582073 | Msa0517060:exon |
| CACGCTTCTCTCTCAAATCT+TGG | 0.317050 | 3_4:+68578121 | None:intergenic |
| ACTGCATTTCCTGCTTGATT+TGG | 0.323697 | 3_4:+68579470 | None:intergenic |
| GAAGAAGGGAGAGGAGGAGT+GGG | 0.341832 | 3_4:-68577266 | Msa0517060:CDS |
| GTTTGTAACGAGTTTGAATT+TGG | 0.348045 | 3_4:+68581986 | None:intergenic |
| AGAGGAGGAGTGGGGATTGT+GGG | 0.348060 | 3_4:-68577257 | Msa0517060:CDS |
| TGCCGCTATTGGTGCTTTCA+TGG | 0.355015 | 3_4:-68581875 | Msa0517060:CDS |
| GCCGCTCAAGGTGCCGCTAT+TGG | 0.367727 | 3_4:-68581886 | Msa0517060:CDS |
| GGAGGAAGAGAGGGCGATGA+TGG | 0.380669 | 3_4:-68577320 | Msa0517060:CDS |
| GTGGTCAAGAATCAAAAGTC+TGG | 0.392608 | 3_4:+68578232 | None:intergenic |
| CTATTCTTTGCACTCGTTCA+AGG | 0.398995 | 3_4:-68579437 | Msa0517060:CDS |
| AGAAGAAGGGAGAGGAGGAG+TGG | 0.407966 | 3_4:-68577267 | Msa0517060:CDS |
| GAGGAAGAGAGGGCGATGAT+GGG | 0.412907 | 3_4:-68577319 | Msa0517060:CDS |
| GCAGGAAATGCAGTCACATC+TGG | 0.415380 | 3_4:-68579461 | Msa0517060:CDS |
| AGCGGCACCTTGAGCGGCGC+TGG | 0.419336 | 3_4:+68581891 | None:intergenic |
| GAGTTTGAATTTGGTCAATT+GGG | 0.427360 | 3_4:+68581995 | None:intergenic |
| GGCTTCTCTTCAACAAGCAC+AGG | 0.449575 | 3_4:-68581779 | Msa0517060:intron |
| GAAGAGAAGCCATGGCTTGA+GGG | 0.462480 | 3_4:+68581791 | None:intergenic |
| GCCGCTATTGGTGCTTTCAT+GGG | 0.474538 | 3_4:-68581874 | Msa0517060:CDS |
| GAAAGGAAGATGTTCAATCT+AGG | 0.476299 | 3_4:-68581564 | Msa0517060:intron |
| ACCAATAGCGGCACCTTGAG+CGG | 0.478375 | 3_4:+68581885 | None:intergenic |
| GGGGAGAGGCGAAACGGTGG+CGG | 0.480646 | 3_4:-68577299 | Msa0517060:CDS |
| GCAATGAAAGTGCGATGGAA+TGG | 0.482263 | 3_4:+68582096 | None:intergenic |
| GAGAGGCGAAACGGTGGCGG+CGG | 0.482752 | 3_4:-68577296 | Msa0517060:CDS |
| TGAGGGTTAAGAGAAGCATT+AGG | 0.484112 | 3_4:+68581808 | None:intergenic |
| AGGAAGAGAGGGCGATGATG+GGG | 0.486664 | 3_4:-68577318 | Msa0517060:CDS |
| CGGCAGCTGCGAGATGATGA+TGG | 0.495337 | 3_4:-68577342 | Msa0517060:CDS |
| GCTTTCATGGGTACTCTCAC+CGG | 0.501511 | 3_4:-68581862 | Msa0517060:CDS |
| GGCGGCGGCGACGAAGAAGA+AGG | 0.503423 | 3_4:-68577281 | Msa0517060:CDS |
| GAAGCATTAGGCGGTGGAGT+TGG | 0.513779 | 3_4:+68581820 | None:intergenic |
| GATGATGGGGAGAGGCGAAA+CGG | 0.516939 | 3_4:-68577305 | Msa0517060:CDS |
| GAGAGGGCGATGATGGGGAG+AGG | 0.517268 | 3_4:-68577313 | Msa0517060:CDS |
| AAGAAGGGAGAGGAGGAGTG+GGG | 0.517559 | 3_4:-68577265 | Msa0517060:CDS |
| AGAATCAAAAGTCTGGGTCC+TGG | 0.519605 | 3_4:+68578239 | None:intergenic |
| GCATAGTGAGTATCTTCAGC+AGG | 0.520197 | 3_4:+68578489 | None:intergenic |
| GAGGTCCTTTGATTCAGGCT+CGG | 0.526552 | 3_4:-68581648 | Msa0517060:CDS |
| TTCTCTTAACCCTCAAGCCA+TGG | 0.531805 | 3_4:-68581800 | Msa0517060:CDS |
| AGTGACGACGGCGGCTTCAA+CGG | 0.534169 | 3_4:+68581918 | None:intergenic |
| TTTGAAAAGGTTGAGAGGAA+AGG | 0.538369 | 3_4:-68581581 | Msa0517060:CDS |
| GACGGCGGCTTCAACGGCAA+TGG | 0.539945 | 3_4:+68581924 | None:intergenic |
| AAATTCCGAGCCTGAATCAA+AGG | 0.541754 | 3_4:+68581643 | None:intergenic |
| TGAAGAGAAGCCATGGCTTG+AGG | 0.543694 | 3_4:+68581790 | None:intergenic |
| GGCACCTTGAGCGGCGCTGG+TGG | 0.544497 | 3_4:+68581894 | None:intergenic |
| AGAAACATGTTGCAAAACCT+TGG | 0.547455 | 3_4:-68578459 | Msa0517060:CDS |
| AAAATGGAACAAGGAAAGCA+AGG | 0.552828 | 3_4:-68582057 | Msa0517060:CDS |
| TTCTTTGCACTCGTTCAAGG+TGG | 0.553419 | 3_4:-68579434 | Msa0517060:CDS |
| ACCACTTACCAACGAAAACA+TGG | 0.554052 | 3_4:+68579502 | None:intergenic |
| TTAAGAGAAGCATTAGGCGG+TGG | 0.554987 | 3_4:+68581814 | None:intergenic |
| CTTTGCCTCTACTCAATGAC+AGG | 0.556049 | 3_4:-68578386 | Msa0517060:intron |
| CAAGGAGCAATGGTGTTGAA+AGG | 0.560406 | 3_4:-68582039 | Msa0517060:CDS |
| GGCGACGAAGAAGAAGGGAG+AGG | 0.561810 | 3_4:-68577275 | Msa0517060:CDS |
| TCATTCCCTACCTATGGATG+TGG | 0.562301 | 3_4:+68578213 | None:intergenic |
| TCTTTGCACTCGTTCAAGGT+GGG | 0.562699 | 3_4:-68579433 | Msa0517060:CDS |
| TGATTCTTGACCACATCCAT+AGG | 0.564371 | 3_4:-68578223 | Msa0517060:intron |
| GGCAGCTGCGAGATGATGAT+GGG | 0.567162 | 3_4:-68577341 | Msa0517060:CDS |
| GCGGCGGCGACGAAGAAGAA+GGG | 0.569985 | 3_4:-68577280 | Msa0517060:CDS |
| ATGATGATGGGAGGAAGAGA+GGG | 0.570217 | 3_4:-68577329 | Msa0517060:CDS |
| GATGATGATGGGAGGAAGAG+AGG | 0.570863 | 3_4:-68577330 | Msa0517060:CDS |
| TGCTTGTTGAAGAGAAGCCA+TGG | 0.570983 | 3_4:+68581783 | None:intergenic |
| GTTATGACCGGAGTGAATGC+TGG | 0.579346 | 3_4:-68581616 | Msa0517060:CDS |
| TGGTCAAGAATCAAAAGTCT+GGG | 0.579852 | 3_4:+68578233 | None:intergenic |
| GACGAAGAAGAAGGGAGAGG+AGG | 0.585768 | 3_4:-68577272 | Msa0517060:CDS |
| ACAAGGAAAGCAAGGAGCAA+TGG | 0.598205 | 3_4:-68582049 | Msa0517060:CDS |
| ACTACCACCAGCGCCGCTCA+AGG | 0.598244 | 3_4:-68581898 | Msa0517060:CDS |
| AGAGATGTGAAAATTCCTCC+AGG | 0.598994 | 3_4:-68578257 | Msa0517060:CDS |
| ACGCCGCAATGAAAGTGCGA+TGG | 0.602802 | 3_4:+68582091 | None:intergenic |
| ATGGGTGGACCAAATCAAGC+AGG | 0.603273 | 3_4:-68579479 | Msa0517060:CDS |
| ATATTGCAGGCTCTTGCTGG+AGG | 0.603922 | 3_4:-68581667 | Msa0517060:intron |
| GATGGGGAGAGGCGAAACGG+TGG | 0.604093 | 3_4:-68577302 | Msa0517060:CDS |
| AAAAGCGGAAGATGCATCAC+CGG | 0.604200 | 3_4:+68581843 | None:intergenic |
| TCGTTGGTAAGTGGTATGGG+TGG | 0.609634 | 3_4:-68579494 | Msa0517060:CDS |
| GAAAGTGCGATGGAATGGAA+TGG | 0.610330 | 3_4:+68582101 | None:intergenic |
| TCTCGTAATTCTGAAGACCA+AGG | 0.621324 | 3_4:+68578442 | None:intergenic |
| TCCTACCTGTCATTGAGTAG+AGG | 0.629468 | 3_4:+68578381 | None:intergenic |
| AGGCGGTGGAGTTGGAAAAG+CGG | 0.634509 | 3_4:+68581828 | None:intergenic |
| ATTCCATCGCACTTTCATTG+CGG | 0.636870 | 3_4:-68582094 | Msa0517060:five_prime_UTR |
| ACCCATGAAAGCACCAATAG+CGG | 0.640706 | 3_4:+68581873 | None:intergenic |
| CAAGATTTGAGAGAGAAGCG+TGG | 0.647885 | 3_4:-68578120 | Msa0517060:CDS |
| GGCGCTGGTGGTAGTGACGA+CGG | 0.652693 | 3_4:+68581906 | None:intergenic |
| AGCTGCGAGATGATGATGGG+AGG | 0.659347 | 3_4:-68577338 | Msa0517060:CDS |
| TTCGATGGAATAGTTTACGA+CGG | 0.661466 | 3_4:-68577362 | Msa0517060:CDS |
| AGTAATACCAGCATTCACTC+CGG | 0.663197 | 3_4:+68581609 | None:intergenic |
| TAGTGAGTATCTTCAGCAGG+TGG | 0.670063 | 3_4:+68578492 | None:intergenic |
| ATCAAAAGTCTGGGTCCTGG+AGG | 0.677468 | 3_4:+68578242 | None:intergenic |
| AAATTCAAGAAAATGGAACA+AGG | 0.680356 | 3_4:-68582066 | Msa0517060:exon |
| GGGTTAAGAGAAGCATTAGG+CGG | 0.704564 | 3_4:+68581811 | None:intergenic |
| AATTATTTATTGCAGCATGG+CGG | 0.719549 | 3_4:-68579543 | Msa0517060:intron |
| GCTGGTGGTAGTGACGACGG+CGG | 0.763415 | 3_4:+68581909 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAACAAAAATTAAAAAAATT+AGG | + | chr3_4:68577633-68577652 | None:intergenic | 10.0% |
| !!! | ATTATTTTTAATTTGTTCTT+GGG | - | chr3_4:68578139-68578158 | Msa0517060:intron | 10.0% |
| !!! | ATATTAATTACAATCTTTTT+AGG | + | chr3_4:68578975-68578994 | None:intergenic | 10.0% |
| !!! | TTTATATATTAAAAGGTTTT+AGG | - | chr3_4:68579015-68579034 | Msa0517060:intron | 10.0% |
| !! | TTGATTATTAACAAATTATT+TGG | - | chr3_4:68580639-68580658 | Msa0517060:intron | 10.0% |
| !! | TGATTATTAACAAATTATTT+GGG | - | chr3_4:68580640-68580659 | Msa0517060:intron | 10.0% |
| !! | AAGAGAAAAGAAAAAAAATT+AGG | + | chr3_4:68577825-68577844 | None:intergenic | 15.0% |
| !! | AATAGTTTAGTGTTAATAAT+TGG | + | chr3_4:68577922-68577941 | None:intergenic | 15.0% |
| !! | CAAGAACAAATTAAAAATAA+TGG | + | chr3_4:68578140-68578159 | None:intergenic | 15.0% |
| !!! | CATTATTTTTAATTTGTTCT+TGG | - | chr3_4:68578138-68578157 | Msa0517060:intron | 15.0% |
| !! | CAATTTATGCAATATTTATT+TGG | + | chr3_4:68578636-68578655 | None:intergenic | 15.0% |
| !! | ATAAATATTGCATAAATTGA+TGG | - | chr3_4:68578637-68578656 | Msa0517060:intron | 15.0% |
| !!! | TATTTTCATAAACTCTAAAA+AGG | + | chr3_4:68578681-68578700 | None:intergenic | 15.0% |
| !! | ATTTATAAGTCAATATAAGA+TGG | - | chr3_4:68579476-68579495 | Msa0517060:CDS | 15.0% |
| !!! | AAGTTTGAAATTTAATATTG+AGG | + | chr3_4:68579519-68579538 | None:intergenic | 15.0% |
| !! | AAATGTTTACATCTTTAAAT+GGG | + | chr3_4:68580282-68580301 | None:intergenic | 15.0% |
| !! | AAAATGTTTACATCTTTAAA+TGG | + | chr3_4:68580283-68580302 | None:intergenic | 15.0% |
| !! | GTAAAATAAATTCTATACAT+TGG | + | chr3_4:68580308-68580327 | None:intergenic | 15.0% |
| !!! | TGACAGTTATTTTAAAAAAT+CGG | + | chr3_4:68580432-68580451 | None:intergenic | 15.0% |
| !!! | TGTCTAAATTTTTTAACAAT+AGG | + | chr3_4:68580691-68580710 | None:intergenic | 15.0% |
| !! | ATTGTTAAAAAATTTAGACA+TGG | - | chr3_4:68580691-68580710 | Msa0517060:intron | 15.0% |
| !! | TTTGTTGAATTTCAAAAGTT+AGG | - | chr3_4:68577646-68577665 | Msa0517060:intron | 20.0% |
| !! | TTGTTGAATTTCAAAAGTTA+GGG | - | chr3_4:68577647-68577666 | Msa0517060:intron | 20.0% |
| !!! | TGTGTTACTGTTAAAATTAT+AGG | - | chr3_4:68578878-68578897 | Msa0517060:intron | 20.0% |
| !!! | GTGTTACTGTTAAAATTATA+GGG | - | chr3_4:68578879-68578898 | Msa0517060:intron | 20.0% |
| !! | TGTTACTGTTAAAATTATAG+GGG | - | chr3_4:68578880-68578899 | Msa0517060:intron | 20.0% |
| !!! | ATGGTATATTTTCATGTATT+AGG | - | chr3_4:68579193-68579212 | Msa0517060:intron | 20.0% |
| !!! | AGTTATTAATGTCAGATTTT+TGG | - | chr3_4:68580174-68580193 | Msa0517060:intron | 20.0% |
| !! | GACATTCCTTTATAAAAATT+TGG | + | chr3_4:68580560-68580579 | None:intergenic | 20.0% |
| !! | AAAATTTAGACATGGTTTAT+TGG | - | chr3_4:68580699-68580718 | Msa0517060:intron | 20.0% |
| !!! | TGTATTTCCGATTTTTATTT+TGG | - | chr3_4:68580765-68580784 | Msa0517060:intron | 20.0% |
| !! | GCAGTTTATTTGATAAAATT+TGG | - | chr3_4:68581385-68581404 | Msa0517060:intron | 20.0% |
| !! | TGTTAAAAATAAAACGACTA+TGG | - | chr3_4:68581554-68581573 | Msa0517060:intron | 20.0% |
| ! | AAATTCAAGAAAATGGAACA+AGG | - | chr3_4:68577284-68577303 | Msa0517060:CDS | 25.0% |
| !! | TTTCATCGAATTTTCTATGT+TGG | - | chr3_4:68577594-68577613 | Msa0517060:intron | 25.0% |
| !!! | TTTGTTGTTTATGATATTGC+AGG | - | chr3_4:68577670-68577689 | Msa0517060:intron | 25.0% |
| !!! | GTATTACTTGTGTTTTGAAA+AGG | - | chr3_4:68577756-68577775 | Msa0517060:intron | 25.0% |
| !! | TTTTCTCTTTCTTGTATGTT+TGG | - | chr3_4:68577836-68577855 | Msa0517060:intron | 25.0% |
| ! | TTTAATATAATCACACGTGT+TGG | - | chr3_4:68578036-68578055 | Msa0517060:intron | 25.0% |
| ! | TGCTATAATTATGTGAATTG+TGG | - | chr3_4:68578169-68578188 | Msa0517060:intron | 25.0% |
| ! | ATAGTCCCTAAACTTAAATA+GGG | - | chr3_4:68578381-68578400 | Msa0517060:intron | 25.0% |
| !! | TATTTATTTGGCTTACACTA+AGG | + | chr3_4:68578624-68578643 | None:intergenic | 25.0% |
| ! | AATATTGCATAAATTGATGG+AGG | - | chr3_4:68578640-68578659 | Msa0517060:intron | 25.0% |
| !!! | AATATACCATCTTTTGAGAA+GGG | + | chr3_4:68579183-68579202 | None:intergenic | 25.0% |
| !!! | AAATATACCATCTTTTGAGA+AGG | + | chr3_4:68579184-68579203 | None:intergenic | 25.0% |
| !! | ATGATTTATTTGACCCTTTT+AGG | + | chr3_4:68579256-68579275 | None:intergenic | 25.0% |
| !! | TCAAATAAATCATGATAGTG+TGG | - | chr3_4:68579263-68579282 | Msa0517060:intron | 25.0% |
| !! | CAAATAAATCATGATAGTGT+GGG | - | chr3_4:68579264-68579283 | Msa0517060:intron | 25.0% |
| !! | ATCATCTCATTTGTGTTATT+TGG | - | chr3_4:68579301-68579320 | Msa0517060:intron | 25.0% |
| ! | CTTAAATTCATGTCAAGTTA+AGG | - | chr3_4:68579330-68579349 | Msa0517060:intron | 25.0% |
| !! | TCATCACCATTTTATGTTAT+TGG | - | chr3_4:68579403-68579422 | Msa0517060:intron | 25.0% |
| ! | TTCATCTACAATAAATCTGT+TGG | + | chr3_4:68579634-68579653 | None:intergenic | 25.0% |
| ! | TACAATTATTTATTGCAGCA+TGG | - | chr3_4:68579804-68579823 | Msa0517060:intron | 25.0% |
| !! | GTACTACTACAAGATTATTT+TGG | + | chr3_4:68579993-68580012 | None:intergenic | 25.0% |
| ! | TTATATTTACCAAGTCAACT+GGG | - | chr3_4:68580128-68580147 | Msa0517060:intron | 25.0% |
| ! | GTCAAATACTCAATTCATAT+TGG | - | chr3_4:68580448-68580467 | Msa0517060:intron | 25.0% |
| !! | AATGTAAAACTAGTTTACAC+TGG | - | chr3_4:68580476-68580495 | Msa0517060:intron | 25.0% |
| !! | AGACTTTTTAATAGCCTTTT+AGG | - | chr3_4:68580529-68580548 | Msa0517060:intron | 25.0% |
| !! | GCTATGCCAAATTTTTATAA+AGG | - | chr3_4:68580551-68580570 | Msa0517060:intron | 25.0% |
| !! | ATTTTTATAAAGGAATGTCC+AGG | - | chr3_4:68580561-68580580 | Msa0517060:intron | 25.0% |
| !!! | GCATTTTTCAATTTTCATGT+TGG | - | chr3_4:68580597-68580616 | Msa0517060:intron | 25.0% |
| ! | ATACATATAACAACGAATCT+AGG | + | chr3_4:68580750-68580769 | None:intergenic | 25.0% |
| !! | TATAGTTTAAGACATGCTAT+GGG | + | chr3_4:68580803-68580822 | None:intergenic | 25.0% |
| ! | TATACATTAATCATGCAGAT+AGG | - | chr3_4:68580819-68580838 | Msa0517060:intron | 25.0% |
| !!! | TACGAGAAGAATTTTAAGAA+AGG | - | chr3_4:68580924-68580943 | Msa0517060:intron | 25.0% |
| ! | AAGTACTTTAAGTCAATCAA+TGG | + | chr3_4:68581040-68581059 | None:intergenic | 25.0% |
| ! | ATAAGATAAGTCATTGTTTG+TGG | - | chr3_4:68581487-68581506 | Msa0517060:intron | 25.0% |
| ! | TGAAAATTCACTTCCATTAA+CGG | + | chr3_4:68581606-68581625 | None:intergenic | 25.0% |
| ! | TAAAACCTAAATGGACAAAA+TGG | + | chr3_4:68581701-68581720 | None:intergenic | 25.0% |
| !! | TCTTTCATCTAAAACCTAAA+TGG | + | chr3_4:68581710-68581729 | None:intergenic | 25.0% |
| ! | ACGTGGCAAAATTAAATTTA+AGG | - | chr3_4:68581729-68581748 | Msa0517060:intron | 25.0% |
| ! | CGTGGCAAAATTAAATTTAA+GGG | - | chr3_4:68581730-68581749 | Msa0517060:intron | 25.0% |
| ! | ATCTAATTCAGATTTGTGTT+TGG | - | chr3_4:68581945-68581964 | Msa0517060:CDS | 25.0% |
| !!! | TTTGATTTTGTAGATTTCGA+TGG | - | chr3_4:68581973-68581992 | Msa0517060:CDS | 25.0% |
| GAGTTTGAATTTGGTCAATT+GGG | + | chr3_4:68577358-68577377 | None:intergenic | 30.0% | |
| GTTTGTAACGAGTTTGAATT+TGG | + | chr3_4:68577367-68577386 | None:intergenic | 30.0% | |
| CGTTACAAACACTTAGAAAA+TGG | - | chr3_4:68577377-68577396 | Msa0517060:intron | 30.0% | |
| TAGAAAATGGTTTCAAGCTT+TGG | - | chr3_4:68577390-68577409 | Msa0517060:intron | 30.0% | |
| ! | TTGTATGTTTGGTTTACTTG+TGG | - | chr3_4:68577847-68577866 | Msa0517060:intron | 30.0% |
| ! | TGTATGTTTGGTTTACTTGT+GGG | - | chr3_4:68577848-68577867 | Msa0517060:intron | 30.0% |
| TTGTGGTTTAGTTGAATAAC+TGG | - | chr3_4:68578186-68578205 | Msa0517060:intron | 30.0% | |
| AGAAAAGGGAAATGAAAGAA+AGG | - | chr3_4:68578358-68578377 | Msa0517060:intron | 30.0% | |
| GATAGTCCCTAAACTTAAAT+AGG | - | chr3_4:68578380-68578399 | Msa0517060:intron | 30.0% | |
| TAGTCCCTAAACTTAAATAG+GGG | - | chr3_4:68578382-68578401 | Msa0517060:intron | 30.0% | |
| ! | AAACCCCCTATTTAAGTTTA+GGG | + | chr3_4:68578389-68578408 | None:intergenic | 30.0% |
| ! | GAGGTACTCAAAAATTGTAT+TGG | - | chr3_4:68578442-68578461 | Msa0517060:CDS | 30.0% |
| GTACTCAAAAATTGTATTGG+AGG | - | chr3_4:68578445-68578464 | Msa0517060:CDS | 30.0% | |
| !! | TTTTGTTTGTGAGTTTAGAG+AGG | + | chr3_4:68578601-68578620 | None:intergenic | 30.0% |
| TGAGAAAACTCAATATCTCA+AGG | + | chr3_4:68578716-68578735 | None:intergenic | 30.0% | |
| !!! | GAGATTTTTTTTGAACCATG+AGG | - | chr3_4:68578927-68578946 | Msa0517060:intron | 30.0% |
| TTAGGTTATCAACTGTTAAG+AGG | - | chr3_4:68579033-68579052 | Msa0517060:intron | 30.0% | |
| TTCATTGTATTTCCTCGTTA+AGG | - | chr3_4:68579066-68579085 | Msa0517060:intron | 30.0% | |
| ! | TTGCCTTATTCTACTATTAG+TGG | - | chr3_4:68579094-68579113 | Msa0517060:intron | 30.0% |
| ! | TGCCTTATTCTACTATTAGT+GGG | - | chr3_4:68579095-68579114 | Msa0517060:intron | 30.0% |
| AACCCACTAATAGTAGAATA+AGG | + | chr3_4:68579100-68579119 | None:intergenic | 30.0% | |
| !! | TATTCTACTATTAGTGGGTT+TGG | - | chr3_4:68579100-68579119 | Msa0517060:intron | 30.0% |
| !! | ATTCTACTATTAGTGGGTTT+GGG | - | chr3_4:68579101-68579120 | Msa0517060:intron | 30.0% |
| !! | CTCATTTGTGTTATTTGGTT+TGG | - | chr3_4:68579306-68579325 | Msa0517060:intron | 30.0% |
| ! | ACCATTTTATGTTATTGGTC+TGG | - | chr3_4:68579408-68579427 | Msa0517060:intron | 30.0% |
| ACCAGACCAATAACATAAAA+TGG | + | chr3_4:68579412-68579431 | None:intergenic | 30.0% | |
| ! | ATATTTCAATACACTTGGTG+TGG | - | chr3_4:68579446-68579465 | Msa0517060:CDS | 30.0% |
| ! | AATATAAGATGGAGTATCAC+TGG | - | chr3_4:68579487-68579506 | Msa0517060:CDS | 30.0% |
| ! | TGAAAATGAATTTGCTCTTG+TGG | - | chr3_4:68579650-68579669 | Msa0517060:intron | 30.0% |
| !!! | GTGATGCTTTTGGTTTAAAT+CGG | - | chr3_4:68579672-68579691 | Msa0517060:intron | 30.0% |
| AAGACACATCAATGATAACA+AGG | + | chr3_4:68579760-68579779 | None:intergenic | 30.0% | |
| AATTATTTATTGCAGCATGG+CGG | - | chr3_4:68579807-68579826 | Msa0517060:intron | 30.0% | |
| ATGTTTACCACTGATGAAAT+GGG | + | chr3_4:68580017-68580036 | None:intergenic | 30.0% | |
| TATGTTTACCACTGATGAAA+TGG | + | chr3_4:68580018-68580037 | None:intergenic | 30.0% | |
| CTTATATTTACCAAGTCAAC+TGG | - | chr3_4:68580127-68580146 | Msa0517060:intron | 30.0% | |
| GCTATGTAAAATACAAGCTT+GGG | - | chr3_4:68580150-68580169 | Msa0517060:intron | 30.0% | |
| AGCAATATGATAGTAAGTCA+TGG | + | chr3_4:68580386-68580405 | None:intergenic | 30.0% | |
| AGTCTATCTTGAAAGAGAAA+AGG | + | chr3_4:68580514-68580533 | None:intergenic | 30.0% | |
| AAAATTTGGCATAGCCTAAA+AGG | + | chr3_4:68580546-68580565 | None:intergenic | 30.0% | |
| TAATCAACAAACATTCACTG+AGG | + | chr3_4:68580626-68580645 | None:intergenic | 30.0% | |
| ! | GTATAGTTTAAGACATGCTA+TGG | + | chr3_4:68580804-68580823 | None:intergenic | 30.0% |
| ! | AGCTTTAGCAATTAAGAGTA+TGG | + | chr3_4:68581191-68581210 | None:intergenic | 30.0% |
| AGATTATGCATGTCAGTTAA+CGG | + | chr3_4:68581262-68581281 | None:intergenic | 30.0% | |
| !!! | ATCTGAACTCTTTTTTAGGA+GGG | + | chr3_4:68581657-68581676 | None:intergenic | 30.0% |
| !!! | TATCTGAACTCTTTTTTAGG+AGG | + | chr3_4:68581658-68581677 | None:intergenic | 30.0% |
| !!! | GCATATCTGAACTCTTTTTT+AGG | + | chr3_4:68581661-68581680 | None:intergenic | 30.0% |
| ! | AAAATGGAGCATTACCTAAA+TGG | + | chr3_4:68581685-68581704 | None:intergenic | 30.0% |
| ! | GGCGTTGAAATTCAAGAAAA+TGG | - | chr3_4:68577277-68577296 | Msa0517060:CDS | 35.0% |
| AAAATGGAACAAGGAAAGCA+AGG | - | chr3_4:68577293-68577312 | Msa0517060:CDS | 35.0% | |
| !!! | ATTGGGTTTTGAAGTTGTTG+TGG | + | chr3_4:68577341-68577360 | None:intergenic | 35.0% |
| CGAGTTTGAATTTGGTCAAT+TGG | + | chr3_4:68577359-68577378 | None:intergenic | 35.0% | |
| !!! | TGTGTTTTGAAAAGGTTGAG+AGG | - | chr3_4:68577764-68577783 | Msa0517060:intron | 35.0% |
| TTTGAAAAGGTTGAGAGGAA+AGG | - | chr3_4:68577769-68577788 | Msa0517060:intron | 35.0% | |
| GAAAGGAAGATGTTCAATCT+AGG | - | chr3_4:68577786-68577805 | Msa0517060:intron | 35.0% | |
| AGTCCCTAAACTTAAATAGG+GGG | - | chr3_4:68578383-68578402 | Msa0517060:intron | 35.0% | |
| ! | CAAACCCCCTATTTAAGTTT+AGG | + | chr3_4:68578390-68578409 | None:intergenic | 35.0% |
| TACAAAACATCCCCTCAAAA+TGG | - | chr3_4:68578420-68578439 | Msa0517060:CDS | 35.0% | |
| ! | TTTGAGTACCTCCATTTTGA+GGG | + | chr3_4:68578434-68578453 | None:intergenic | 35.0% |
| !! | TTTTGAGTACCTCCATTTTG+AGG | + | chr3_4:68578435-68578454 | None:intergenic | 35.0% |
| CTCAAAAATTGTATTGGAGG+AGG | - | chr3_4:68578448-68578467 | Msa0517060:CDS | 35.0% | |
| ATTGTATTGGAGGAGGATTT+CGG | - | chr3_4:68578455-68578474 | Msa0517060:CDS | 35.0% | |
| TTTGTGAGTTTAGAGAGGAA+GGG | + | chr3_4:68578596-68578615 | None:intergenic | 35.0% | |
| AAATTATAGGGGATTCAGTC+AGG | - | chr3_4:68578891-68578910 | Msa0517060:intron | 35.0% | |
| AATTATAGGGGATTCAGTCA+GGG | - | chr3_4:68578892-68578911 | Msa0517060:intron | 35.0% | |
| ! | ATCATCATCTCTTTTCCTCA+TGG | + | chr3_4:68578945-68578964 | None:intergenic | 35.0% |
| GTTATCAACTGTTAAGAGGA+GGG | - | chr3_4:68579037-68579056 | Msa0517060:intron | 35.0% | |
| AAGGCAAATAATCCTTAACG+AGG | + | chr3_4:68579081-68579100 | None:intergenic | 35.0% | |
| GACGCATATTTCAATACACT+TGG | - | chr3_4:68579441-68579460 | Msa0517060:CDS | 35.0% | |
| TGGTAAGATTGTCCAAATAC+CGG | + | chr3_4:68579614-68579633 | None:intergenic | 35.0% | |
| GAGCGTTAAGAAATAGGAAA+TGG | + | chr3_4:68579714-68579733 | None:intergenic | 35.0% | |
| ! | TGAGTAGAGCGTTAAGAAAT+AGG | + | chr3_4:68579720-68579739 | None:intergenic | 35.0% |
| !! | TTTTCGTTGGTAAGTGGTAT+GGG | - | chr3_4:68579853-68579872 | Msa0517060:intron | 35.0% |
| TGTTTACCACTGATGAAATG+GGG | + | chr3_4:68580016-68580035 | None:intergenic | 35.0% | |
| GTAAACATAAATGCTGCACT+AGG | - | chr3_4:68580029-68580048 | Msa0517060:intron | 35.0% | |
| CACAACATAGATTTGGCATA+GGG | + | chr3_4:68580102-68580121 | None:intergenic | 35.0% | |
| ACACAACATAGATTTGGCAT+AGG | + | chr3_4:68580103-68580122 | None:intergenic | 35.0% | |
| TGCCAAATCTATGTTGTGTA+AGG | - | chr3_4:68580104-68580123 | Msa0517060:intron | 35.0% | |
| AGCCTTACACAACATAGATT+TGG | + | chr3_4:68580109-68580128 | None:intergenic | 35.0% | |
| GGCTATGTAAAATACAAGCT+TGG | - | chr3_4:68580149-68580168 | Msa0517060:intron | 35.0% | |
| !!! | TACAAGACTTTTTCGATGGA+TGG | + | chr3_4:68580200-68580219 | None:intergenic | 35.0% |
| ! | ATCCATCGAAAAAGTCTTGT+AGG | - | chr3_4:68580199-68580218 | Msa0517060:intron | 35.0% |
| ! | TCCATCGAAAAAGTCTTGTA+GGG | - | chr3_4:68580200-68580219 | Msa0517060:intron | 35.0% |
| ATCTTGCAATAAGGCTTTCA+AGG | + | chr3_4:68580344-68580363 | None:intergenic | 35.0% | |
| AGAAACCTCATCTTGCAATA+AGG | + | chr3_4:68580353-68580372 | None:intergenic | 35.0% | |
| TATTGCAAGATGAGGTTTCT+CGG | - | chr3_4:68580353-68580372 | Msa0517060:intron | 35.0% | |
| !! | GGGGGTACCAAAATAAAAAT+CGG | + | chr3_4:68580775-68580794 | None:intergenic | 35.0% |
| AAGACATGCTATGGGTTTAA+GGG | + | chr3_4:68580795-68580814 | None:intergenic | 35.0% | |
| TAAGACATGCTATGGGTTTA+AGG | + | chr3_4:68580796-68580815 | None:intergenic | 35.0% | |
| AGAAACATGTTGCAAAACCT+TGG | - | chr3_4:68580891-68580910 | Msa0517060:intron | 35.0% | |
| TGGTCAAGAATCAAAAGTCT+GGG | + | chr3_4:68581120-68581139 | None:intergenic | 35.0% | |
| TAAAGCTAAAGTCTGTCTTC+AGG | - | chr3_4:68581204-68581223 | Msa0517060:intron | 35.0% | |
| AAAGCTAAAGTCTGTCTTCA+GGG | - | chr3_4:68581205-68581224 | Msa0517060:intron | 35.0% | |
| ! | GCTTTTCACCACTTATAGTT+CGG | + | chr3_4:68581292-68581311 | None:intergenic | 35.0% |
| ! | AGTGGTGAAAAGCATAGTAT+AGG | - | chr3_4:68581299-68581318 | Msa0517060:intron | 35.0% |
| ! | GTGGTGAAAAGCATAGTATA+GGG | - | chr3_4:68581300-68581319 | Msa0517060:intron | 35.0% |
| ATGGGGTCAAAAGCAAATTA+TGG | - | chr3_4:68581442-68581461 | Msa0517060:intron | 35.0% | |
| CAAAAGCAAATTATGGTGCA+TGG | - | chr3_4:68581449-68581468 | Msa0517060:intron | 35.0% | |
| ATAGCATTAGCAACCGTTAA+TGG | - | chr3_4:68581590-68581609 | Msa0517060:CDS | 35.0% | |
| !!! | TCTGAACTCTTTTTTAGGAG+GGG | + | chr3_4:68581656-68581675 | None:intergenic | 35.0% |
| AGTTCAGATATGCTCCATTT+AGG | - | chr3_4:68581668-68581687 | Msa0517060:intron | 35.0% | |
| ! | ATGCTCCATTTTGTCCATTT+AGG | - | chr3_4:68581693-68581712 | Msa0517060:intron | 35.0% |
| !!! | TAGGTTTTAGATGAAAGACG+TGG | - | chr3_4:68581712-68581731 | Msa0517060:intron | 35.0% |
| GATTAGATCAGAACAGATGA+CGG | + | chr3_4:68581928-68581947 | None:intergenic | 35.0% | |
| TTCGATGGAATAGTTTACGA+CGG | - | chr3_4:68581988-68582007 | Msa0517060:CDS | 35.0% | |
| ATTCCATCGCACTTTCATTG+CGG | - | chr3_4:68577256-68577275 | Msa0517060:CDS | 40.0% | |
| !! | TGAGGGTTAAGAGAAGCATT+AGG | + | chr3_4:68577545-68577564 | None:intergenic | 40.0% |
| AAATTCCGAGCCTGAATCAA+AGG | + | chr3_4:68577710-68577729 | None:intergenic | 40.0% | |
| !!! | CGGAATTTTGCTGTTATGAC+CGG | - | chr3_4:68577722-68577741 | Msa0517060:intron | 40.0% |
| AGTAATACCAGCATTCACTC+CGG | + | chr3_4:68577744-68577763 | None:intergenic | 40.0% | |
| ! | TTTGCGAGTTTCAAGTGGAT+TGG | - | chr3_4:68578308-68578327 | Msa0517060:intron | 40.0% |
| TGGGTAAAAGGAAGGAGAAA+AGG | - | chr3_4:68578343-68578362 | Msa0517060:intron | 40.0% | |
| GGGTAAAAGGAAGGAGAAAA+GGG | - | chr3_4:68578344-68578363 | Msa0517060:intron | 40.0% | |
| ! | TTGAGGGGATGTTTTGTATG+AGG | + | chr3_4:68578418-68578437 | None:intergenic | 40.0% |
| AAAACATCCCCTCAAAATGG+AGG | - | chr3_4:68578423-68578442 | Msa0517060:CDS | 40.0% | |
| ! | TTGAGTACCTCCATTTTGAG+GGG | + | chr3_4:68578433-68578452 | None:intergenic | 40.0% |
| GTTTGTGAGTTTAGAGAGGA+AGG | + | chr3_4:68578597-68578616 | None:intergenic | 40.0% | |
| GATAGTTGTGGTTGTGTTGA+TGG | + | chr3_4:68578757-68578776 | None:intergenic | 40.0% | |
| CAACACAACCACAACTATCA+AGG | - | chr3_4:68578758-68578777 | Msa0517060:intron | 40.0% | |
| ! | TCACACAACCTTGATAGTTG+TGG | + | chr3_4:68578769-68578788 | None:intergenic | 40.0% |
| GGTTATCAACTGTTAAGAGG+AGG | - | chr3_4:68579036-68579055 | Msa0517060:intron | 40.0% | |
| !! | ATACCATCTTTTGAGAAGGG+TGG | + | chr3_4:68579180-68579199 | None:intergenic | 40.0% |
| ACAGGACAGATTGCCTAAAA+GGG | - | chr3_4:68579240-68579259 | Msa0517060:intron | 40.0% | |
| CATGCACAACTTGTGCTATA+AGG | - | chr3_4:68579365-68579384 | Msa0517060:intron | 40.0% | |
| ACCACTTACCAACGAAAACA+TGG | + | chr3_4:68579851-68579870 | None:intergenic | 40.0% | |
| !! | GTTTTCGTTGGTAAGTGGTA+TGG | - | chr3_4:68579852-68579871 | Msa0517060:intron | 40.0% |
| ACTGCATTTCCTGCTTGATT+TGG | + | chr3_4:68579883-68579902 | None:intergenic | 40.0% | |
| CTATTCTTTGCACTCGTTCA+AGG | - | chr3_4:68579913-68579932 | Msa0517060:intron | 40.0% | |
| GTTTACCACTGATGAAATGG+GGG | + | chr3_4:68580015-68580034 | None:intergenic | 40.0% | |
| CATAAATGCTGCACTAGGAA+TGG | - | chr3_4:68580034-68580053 | Msa0517060:intron | 40.0% | |
| ACTACTCACTATGACTCCAA+GGG | + | chr3_4:68580074-68580093 | None:intergenic | 40.0% | |
| ACATAGATTTGGCATAGGGT+AGG | + | chr3_4:68580098-68580117 | None:intergenic | 40.0% | |
| TTTACATAGCCCAGTTGACT+TGG | + | chr3_4:68580140-68580159 | None:intergenic | 40.0% | |
| ! | AAAGTCTTGTAGGGCCTATT+AGG | - | chr3_4:68580209-68580228 | Msa0517060:intron | 40.0% |
| CATACATGCACCTACCTAAT+AGG | + | chr3_4:68580226-68580245 | None:intergenic | 40.0% | |
| CAATAAGGCTTTCAAGGTCA+TGG | + | chr3_4:68580338-68580357 | None:intergenic | 40.0% | |
| !! | GAAAGCCTTATTGCAAGATG+AGG | - | chr3_4:68580345-68580364 | Msa0517060:intron | 40.0% |
| AATGCAAGACACATAAGACC+TGG | + | chr3_4:68580582-68580601 | None:intergenic | 40.0% | |
| TAGGCAAGAACATCTCACTT+GGG | + | chr3_4:68580731-68580750 | None:intergenic | 40.0% | |
| AGACATGCTATGGGTTTAAG+GGG | + | chr3_4:68580794-68580813 | None:intergenic | 40.0% | |
| ! | TCTCGTAATTCTGAAGACCA+AGG | + | chr3_4:68580911-68580930 | None:intergenic | 40.0% |
| AGAGATGTGAAAATTCCTCC+AGG | - | chr3_4:68581093-68581112 | Msa0517060:intron | 40.0% | |
| GTGGTCAAGAATCAAAAGTC+TGG | + | chr3_4:68581121-68581140 | None:intergenic | 40.0% | |
| TGATTCTTGACCACATCCAT+AGG | - | chr3_4:68581127-68581146 | Msa0517060:intron | 40.0% | |
| ! | AGAGTATCATTCCCTACCTA+TGG | + | chr3_4:68581146-68581165 | None:intergenic | 40.0% |
| TTATGCATGTCAGTTAACGG+CGG | + | chr3_4:68581259-68581278 | None:intergenic | 40.0% | |
| TTTCACCACTTATAGTTCGG+AGG | + | chr3_4:68581289-68581308 | None:intergenic | 40.0% | |
| AAGCACCACAGTTAATCACA+CGG | - | chr3_4:68581783-68581802 | Msa0517060:CDS | 40.0% | |
| ACGTAATAGCAGAAGACAGA+AGG | + | chr3_4:68581827-68581846 | None:intergenic | 40.0% | |
| ! | GCAATGAAAGTGCGATGGAA+TGG | + | chr3_4:68577257-68577276 | None:intergenic | 45.0% |
| ACAAGGAAAGCAAGGAGCAA+TGG | - | chr3_4:68577301-68577320 | Msa0517060:CDS | 45.0% | |
| ! | CAAGGAGCAATGGTGTTGAA+AGG | - | chr3_4:68577311-68577330 | Msa0517060:CDS | 45.0% |
| !! | ACCCATGAAAGCACCAATAG+CGG | + | chr3_4:68577480-68577499 | None:intergenic | 45.0% |
| AAAAGCGGAAGATGCATCAC+CGG | + | chr3_4:68577510-68577529 | None:intergenic | 45.0% | |
| !! | TTAAGAGAAGCATTAGGCGG+TGG | + | chr3_4:68577539-68577558 | None:intergenic | 45.0% |
| !! | GGGTTAAGAGAAGCATTAGG+CGG | + | chr3_4:68577542-68577561 | None:intergenic | 45.0% |
| TTCTCTTAACCCTCAAGCCA+TGG | - | chr3_4:68577550-68577569 | Msa0517060:intron | 45.0% | |
| ! | TGCTTGTTGAAGAGAAGCCA+TGG | + | chr3_4:68577570-68577589 | None:intergenic | 45.0% |
| ATGATATTGCAGGCTCTTGC+TGG | - | chr3_4:68577680-68577699 | Msa0517060:intron | 45.0% | |
| AGTGTTTCTTGTGTCGTGTC+GGG | + | chr3_4:68577976-68577995 | None:intergenic | 45.0% | |
| CAGTGTTTCTTGTGTCGTGT+CGG | + | chr3_4:68577977-68577996 | None:intergenic | 45.0% | |
| !! | TGTTGGTTCCGTGTTTGTGT+TGG | - | chr3_4:68578053-68578072 | Msa0517060:intron | 45.0% |
| TCCAGTGTCCAACACAAACA+CGG | + | chr3_4:68578064-68578083 | None:intergenic | 45.0% | |
| CTCTGTTTGCGAGTTTCAAG+TGG | - | chr3_4:68578303-68578322 | Msa0517060:intron | 45.0% | |
| !! | CGAGTTTCAAGTGGATTGGA+GGG | - | chr3_4:68578312-68578331 | Msa0517060:intron | 45.0% |
| !! | GAGTTTCAAGTGGATTGGAG+GGG | - | chr3_4:68578313-68578332 | Msa0517060:intron | 45.0% |
| !! | GAGAGCTTTGGGTAAAAGGA+AGG | - | chr3_4:68578335-68578354 | Msa0517060:intron | 45.0% |
| TATTGGAGGAGGATTTCGGA+GGG | - | chr3_4:68578459-68578478 | Msa0517060:CDS | 45.0% | |
| GAGTTTAGAGAGGAAGGGAA+GGG | + | chr3_4:68578591-68578610 | None:intergenic | 45.0% | |
| TGAGTTTAGAGAGGAAGGGA+AGG | + | chr3_4:68578592-68578611 | None:intergenic | 45.0% | |
| !! | GTGGTTGTGTTGATGGTAGA+AGG | + | chr3_4:68578750-68578769 | None:intergenic | 45.0% |
| CTGTCTACCCTTATAGGCTT+TGG | + | chr3_4:68579224-68579243 | None:intergenic | 45.0% | |
| CAAAGCCTATAAGGGTAGAC+AGG | - | chr3_4:68579222-68579241 | Msa0517060:intron | 45.0% | |
| TCTGTCCTGTCTACCCTTAT+AGG | + | chr3_4:68579230-68579249 | None:intergenic | 45.0% | |
| GACAGGACAGATTGCCTAAA+AGG | - | chr3_4:68579239-68579258 | Msa0517060:intron | 45.0% | |
| !! | TGCTCTTGTGGTGATGCTTT+TGG | - | chr3_4:68579662-68579681 | Msa0517060:intron | 45.0% |
| !! | GCCATGTTTTCGTTGGTAAG+TGG | - | chr3_4:68579847-68579866 | Msa0517060:intron | 45.0% |
| TTCTTTGCACTCGTTCAAGG+TGG | - | chr3_4:68579916-68579935 | Msa0517060:intron | 45.0% | |
| TCTTTGCACTCGTTCAAGGT+GGG | - | chr3_4:68579917-68579936 | Msa0517060:intron | 45.0% | |
| TAGTACCCCCATTTCATCAG+TGG | - | chr3_4:68580007-68580026 | Msa0517060:intron | 45.0% | |
| GCTGCACTAGGAATGGAAAA+CGG | - | chr3_4:68580041-68580060 | Msa0517060:intron | 45.0% | |
| CACTAGGAATGGAAAACGGT+CGG | - | chr3_4:68580045-68580064 | Msa0517060:intron | 45.0% | |
| CACTACTCACTATGACTCCA+AGG | + | chr3_4:68580075-68580094 | None:intergenic | 45.0% | |
| !!! | GCCCTACAAGACTTTTTCGA+TGG | + | chr3_4:68580204-68580223 | None:intergenic | 45.0% |
| TCTTGTAGGGCCTATTAGGT+AGG | - | chr3_4:68580213-68580232 | Msa0517060:intron | 45.0% | |
| CTAGGCAAGAACATCTCACT+TGG | + | chr3_4:68580732-68580751 | None:intergenic | 45.0% | |
| GACATGCTATGGGTTTAAGG+GGG | + | chr3_4:68580793-68580812 | None:intergenic | 45.0% | |
| TAGTGAGTATCTTCAGCAGG+TGG | + | chr3_4:68580861-68580880 | None:intergenic | 45.0% | |
| GCATAGTGAGTATCTTCAGC+AGG | + | chr3_4:68580864-68580883 | None:intergenic | 45.0% | |
| CTTTGCCTCTACTCAATGAC+AGG | - | chr3_4:68580964-68580983 | Msa0517060:intron | 45.0% | |
| TCCTACCTGTCATTGAGTAG+AGG | + | chr3_4:68580972-68580991 | None:intergenic | 45.0% | |
| AGAATCAAAAGTCTGGGTCC+TGG | + | chr3_4:68581114-68581133 | None:intergenic | 45.0% | |
| TCTTGACCACATCCATAGGT+AGG | - | chr3_4:68581131-68581150 | Msa0517060:intron | 45.0% | |
| CTTGACCACATCCATAGGTA+GGG | - | chr3_4:68581132-68581151 | Msa0517060:intron | 45.0% | |
| TCATTCCCTACCTATGGATG+TGG | + | chr3_4:68581140-68581159 | None:intergenic | 45.0% | |
| CACGCTTCTCTCTCAAATCT+TGG | + | chr3_4:68581232-68581251 | None:intergenic | 45.0% | |
| CAAGATTTGAGAGAGAAGCG+TGG | - | chr3_4:68581230-68581249 | Msa0517060:intron | 45.0% | |
| TCCTACCTCCGAACTATAAG+TGG | - | chr3_4:68581281-68581300 | Msa0517060:intron | 45.0% | |
| ACCACTTATAGTTCGGAGGT+AGG | + | chr3_4:68581285-68581304 | None:intergenic | 45.0% | |
| TGATTGCCCTGAAACGCAAA+TGG | - | chr3_4:68581423-68581442 | Msa0517060:intron | 45.0% | |
| GATTGCCCTGAAACGCAAAT+GGG | - | chr3_4:68581424-68581443 | Msa0517060:intron | 45.0% | |
| ATTGCCCTGAAACGCAAATG+GGG | - | chr3_4:68581425-68581444 | Msa0517060:intron | 45.0% | |
| TTGACCCCATTTGCGTTTCA+GGG | + | chr3_4:68581432-68581451 | None:intergenic | 45.0% | |
| TTTGACCCCATTTGCGTTTC+AGG | + | chr3_4:68581433-68581452 | None:intergenic | 45.0% | |
| CTTCACCGTGTGATTAACTG+TGG | + | chr3_4:68581791-68581810 | None:intergenic | 45.0% | |
| CACAGTTAATCACACGGTGA+AGG | - | chr3_4:68581789-68581808 | Msa0517060:CDS | 45.0% | |
| TTTACCGTGATGAGAGGAGA+TGG | + | chr3_4:68581860-68581879 | None:intergenic | 45.0% | |
| !! | ATGATGATGGGAGGAAGAGA+GGG | - | chr3_4:68582021-68582040 | Msa0517060:CDS | 45.0% |
| !!! | TATTTGTATTTTTTTTTAAA+AGG | - | chr3_4:68578232-68578251 | Msa0517060:CDS | 5.0% |
| !! | TTAATATATAAATATGATTA+TGG | + | chr3_4:68579007-68579026 | None:intergenic | 5.0% |
| !! | AATCATATTTATATATTAAA+AGG | - | chr3_4:68579008-68579027 | Msa0517060:intron | 5.0% |
| ! | TGCCGCTATTGGTGCTTTCA+TGG | - | chr3_4:68577475-68577494 | Msa0517060:intron | 50.0% |
| ! | GCCGCTATTGGTGCTTTCAT+GGG | - | chr3_4:68577476-68577495 | Msa0517060:intron | 50.0% |
| GCTTTCATGGGTACTCTCAC+CGG | - | chr3_4:68577488-68577507 | Msa0517060:intron | 50.0% | |
| GAAGAGAAGCCATGGCTTGA+GGG | + | chr3_4:68577562-68577581 | None:intergenic | 50.0% | |
| TGAAGAGAAGCCATGGCTTG+AGG | + | chr3_4:68577563-68577582 | None:intergenic | 50.0% | |
| GGCTTCTCTTCAACAAGCAC+AGG | - | chr3_4:68577571-68577590 | Msa0517060:intron | 50.0% | |
| ATATTGCAGGCTCTTGCTGG+AGG | - | chr3_4:68577683-68577702 | Msa0517060:intron | 50.0% | |
| TGCTGGAGGTCCTTTGATTC+AGG | - | chr3_4:68577697-68577716 | Msa0517060:intron | 50.0% | |
| GAGGTCCTTTGATTCAGGCT+CGG | - | chr3_4:68577702-68577721 | Msa0517060:intron | 50.0% | |
| GTTATGACCGGAGTGAATGC+TGG | - | chr3_4:68577734-68577753 | Msa0517060:intron | 50.0% | |
| TCCGTGTTTGTGTTGGACAC+TGG | - | chr3_4:68578060-68578079 | Msa0517060:intron | 50.0% | |
| ! | CAATCAGATGTGCTGCTGCT+AGG | - | chr3_4:68578092-68578111 | Msa0517060:intron | 50.0% |
| !! | GCGAGTTTCAAGTGGATTGG+AGG | - | chr3_4:68578311-68578330 | Msa0517060:intron | 50.0% |
| !! | AGGGGAGAGCTTTGGGTAAA+AGG | - | chr3_4:68578331-68578350 | Msa0517060:intron | 50.0% |
| GTATTGGAGGAGGATTTCGG+AGG | - | chr3_4:68578458-68578477 | Msa0517060:CDS | 50.0% | |
| TTAGAGAGGAAGGGAAGGGA+GGG | + | chr3_4:68578587-68578606 | None:intergenic | 50.0% | |
| TTTAGAGAGGAAGGGAAGGG+AGG | + | chr3_4:68578588-68578607 | None:intergenic | 50.0% | |
| GGGATTCAGTCAGGGAAATG+AGG | - | chr3_4:68578900-68578919 | Msa0517060:intron | 50.0% | |
| !! | CATCTTTTGAGAAGGGTGGC+AGG | + | chr3_4:68579176-68579195 | None:intergenic | 50.0% |
| CTGCCACCCTTCTCAAAAGA+TGG | - | chr3_4:68579174-68579193 | Msa0517060:intron | 50.0% | |
| AGGCAGAGCCAAAGCCTATA+AGG | - | chr3_4:68579213-68579232 | Msa0517060:intron | 50.0% | |
| GGCAGAGCCAAAGCCTATAA+GGG | - | chr3_4:68579214-68579233 | Msa0517060:intron | 50.0% | |
| CTTGAAGAGCTCTCTGATGC+CGG | - | chr3_4:68579592-68579611 | Msa0517060:intron | 50.0% | |
| AGCTCTCTGATGCCGGTATT+TGG | - | chr3_4:68579599-68579618 | Msa0517060:intron | 50.0% | |
| !!! | TTCTGGGGCCATGTTTTCGT+TGG | - | chr3_4:68579840-68579859 | Msa0517060:intron | 50.0% |
| ! | TCGTTGGTAAGTGGTATGGG+TGG | - | chr3_4:68579856-68579875 | Msa0517060:intron | 50.0% |
| ATGGGTGGACCAAATCAAGC+AGG | - | chr3_4:68579871-68579890 | Msa0517060:intron | 50.0% | |
| GCAGGAAATGCAGTCACATC+TGG | - | chr3_4:68579889-68579908 | Msa0517060:intron | 50.0% | |
| ! | GCATTTTGTTCGTGCTCACC+TGG | + | chr3_4:68579948-68579967 | None:intergenic | 50.0% |
| ACTCACTATGACTCCAAGGG+TGG | + | chr3_4:68580071-68580090 | None:intergenic | 50.0% | |
| GCCTCTACTCAATGACAGGT+AGG | - | chr3_4:68580968-68580987 | Msa0517060:intron | 50.0% | |
| ATCAAAAGTCTGGGTCCTGG+AGG | + | chr3_4:68581111-68581130 | None:intergenic | 50.0% | |
| CTCTCCATCTCCTCTCATCA+CGG | - | chr3_4:68581853-68581872 | Msa0517060:CDS | 50.0% | |
| TGGAGGTTTACCGTGATGAG+AGG | + | chr3_4:68581866-68581885 | None:intergenic | 50.0% | |
| ! | TCAGAACAGATGACGGCGAT+GGG | + | chr3_4:68581921-68581940 | None:intergenic | 50.0% |
| ! | ATCAGAACAGATGACGGCGA+TGG | + | chr3_4:68581922-68581941 | None:intergenic | 50.0% |
| !! | GATGATGATGGGAGGAAGAG+AGG | - | chr3_4:68582020-68582039 | Msa0517060:CDS | 50.0% |
| ! | ACGCCGCAATGAAAGTGCGA+TGG | + | chr3_4:68577262-68577281 | None:intergenic | 55.0% |
| ACCAATAGCGGCACCTTGAG+CGG | + | chr3_4:68577468-68577487 | None:intergenic | 55.0% | |
| AGGCGGTGGAGTTGGAAAAG+CGG | + | chr3_4:68577525-68577544 | None:intergenic | 55.0% | |
| ! | GAAGCATTAGGCGGTGGAGT+TGG | + | chr3_4:68577533-68577552 | None:intergenic | 55.0% |
| ! | TGGATTGGAGGGGAGAGCTT+TGG | - | chr3_4:68578323-68578342 | Msa0517060:intron | 55.0% |
| GGATTGGAGGGGAGAGCTTT+GGG | - | chr3_4:68578324-68578343 | Msa0517060:intron | 55.0% | |
| ! | CTTTGGGGGAGAAGAGTAGG+GGG | + | chr3_4:68578564-68578583 | None:intergenic | 55.0% |
| !! | GCTTTGGGGGAGAAGAGTAG+GGG | + | chr3_4:68578565-68578584 | None:intergenic | 55.0% |
| !! | GGCTTTGGGGGAGAAGAGTA+GGG | + | chr3_4:68578566-68578585 | None:intergenic | 55.0% |
| !!! | ATGGCGGCAGCTTTTGGTTC+TGG | - | chr3_4:68579823-68579842 | Msa0517060:intron | 55.0% |
| !!! | TGGCGGCAGCTTTTGGTTCT+GGG | - | chr3_4:68579824-68579843 | Msa0517060:intron | 55.0% |
| !! | CGTTCAAGGTGGGCTTTTCC+AGG | - | chr3_4:68579927-68579946 | Msa0517060:intron | 55.0% |
| GGCAGCTGCGAGATGATGAT+GGG | - | chr3_4:68582009-68582028 | Msa0517060:CDS | 55.0% | |
| !! | AGCTGCGAGATGATGATGGG+AGG | - | chr3_4:68582012-68582031 | Msa0517060:CDS | 55.0% |
| GAGGAAGAGAGGGCGATGAT+GGG | - | chr3_4:68582031-68582050 | Msa0517060:CDS | 55.0% | |
| AGGAAGAGAGGGCGATGATG+GGG | - | chr3_4:68582032-68582051 | Msa0517060:CDS | 55.0% | |
| !! | GATGATGGGGAGAGGCGAAA+CGG | - | chr3_4:68582045-68582064 | Msa0517060:CDS | 55.0% |
| GACGAAGAAGAAGGGAGAGG+AGG | - | chr3_4:68582078-68582097 | Msa0517060:five_prime_UTR | 55.0% | |
| AGAAGAAGGGAGAGGAGGAG+TGG | - | chr3_4:68582083-68582102 | Msa0517060:five_prime_UTR | 55.0% | |
| GAAGAAGGGAGAGGAGGAGT+GGG | - | chr3_4:68582084-68582103 | Msa0517060:five_prime_UTR | 55.0% | |
| AAGAAGGGAGAGGAGGAGTG+GGG | - | chr3_4:68582085-68582104 | Msa0517060:five_prime_UTR | 55.0% | |
| AGAGGAGGAGTGGGGATTGT+GGG | - | chr3_4:68582093-68582112 | Msa0517060:five_prime_UTR | 55.0% | |
| AGTGACGACGGCGGCTTCAA+CGG | + | chr3_4:68577435-68577454 | None:intergenic | 60.0% | |
| !! | GGGCTTTGGGGGAGAAGAGT+AGG | + | chr3_4:68578567-68578586 | None:intergenic | 60.0% |
| ! | AAGGGAAGGGAGGGCTTTGG+GGG | + | chr3_4:68578578-68578597 | None:intergenic | 60.0% |
| GAAGGGAAGGGAGGGCTTTG+GGG | + | chr3_4:68578579-68578598 | None:intergenic | 60.0% | |
| GGAAGGGAAGGGAGGGCTTT+GGG | + | chr3_4:68578580-68578599 | None:intergenic | 60.0% | |
| AGGAAGGGAAGGGAGGGCTT+TGG | + | chr3_4:68578581-68578600 | None:intergenic | 60.0% | |
| ! | TGCAGCATGGCGGCAGCTTT+TGG | - | chr3_4:68579817-68579836 | Msa0517060:intron | 60.0% |
| !!! | GGCGGCAGCTTTTGGTTCTG+GGG | - | chr3_4:68579825-68579844 | Msa0517060:intron | 60.0% |
| TGACGGCGATGGGTGGTTGT+GGG | + | chr3_4:68581911-68581930 | None:intergenic | 60.0% | |
| ATGACGGCGATGGGTGGTTG+TGG | + | chr3_4:68581912-68581931 | None:intergenic | 60.0% | |
| ! | GAACAGATGACGGCGATGGG+TGG | + | chr3_4:68581918-68581937 | None:intergenic | 60.0% |
| CGGCAGCTGCGAGATGATGA+TGG | - | chr3_4:68582008-68582027 | Msa0517060:CDS | 60.0% | |
| GGAGGAAGAGAGGGCGATGA+TGG | - | chr3_4:68582030-68582049 | Msa0517060:CDS | 60.0% | |
| GGCGACGAAGAAGAAGGGAG+AGG | - | chr3_4:68582075-68582094 | Msa0517060:exon | 60.0% | |
| GAGAGGAGGAGTGGGGATTG+TGG | - | chr3_4:68582092-68582111 | Msa0517060:five_prime_UTR | 60.0% | |
| GACGGCGGCTTCAACGGCAA+TGG | + | chr3_4:68577429-68577448 | None:intergenic | 65.0% | |
| ! | GCTGGTGGTAGTGACGACGG+CGG | + | chr3_4:68577444-68577463 | None:intergenic | 65.0% |
| !! | GGCGCTGGTGGTAGTGACGA+CGG | + | chr3_4:68577447-68577466 | None:intergenic | 65.0% |
| ACTACCACCAGCGCCGCTCA+AGG | - | chr3_4:68577452-68577471 | Msa0517060:intron | 65.0% | |
| !! | GCCGCTCAAGGTGCCGCTAT+TGG | - | chr3_4:68577464-68577483 | Msa0517060:intron | 65.0% |
| GGAAAACGGTCGGCCACCCT+TGG | - | chr3_4:68580055-68580074 | Msa0517060:intron | 65.0% | |
| !! | GAGAGGGCGATGATGGGGAG+AGG | - | chr3_4:68582037-68582056 | Msa0517060:CDS | 65.0% |
| GATGGGGAGAGGCGAAACGG+TGG | - | chr3_4:68582048-68582067 | Msa0517060:CDS | 65.0% | |
| GCGGCGGCGACGAAGAAGAA+GGG | - | chr3_4:68582070-68582089 | Msa0517060:exon | 65.0% | |
| !! | GTGCTGGTGGTGGTGGGTGG+AGG | + | chr3_4:68581883-68581902 | None:intergenic | 70.0% |
| !! | GTGGTGCTGGTGGTGGTGGG+TGG | + | chr3_4:68581886-68581905 | None:intergenic | 70.0% |
| !! | GCGGTGGTGCTGGTGGTGGT+GGG | + | chr3_4:68581889-68581908 | None:intergenic | 70.0% |
| ! | GTTGTGGGCGGTGGTGCTGG+TGG | + | chr3_4:68581896-68581915 | None:intergenic | 70.0% |
| GTGGTTGTGGGCGGTGGTGC+TGG | + | chr3_4:68581899-68581918 | None:intergenic | 70.0% | |
| CGATGGGTGGTTGTGGGCGG+TGG | + | chr3_4:68581905-68581924 | None:intergenic | 70.0% | |
| CGGCGATGGGTGGTTGTGGG+CGG | + | chr3_4:68581908-68581927 | None:intergenic | 70.0% | |
| GGGGAGAGGCGAAACGGTGG+CGG | - | chr3_4:68582051-68582070 | Msa0517060:CDS | 70.0% | |
| ! | GAGAGGCGAAACGGTGGCGG+CGG | - | chr3_4:68582054-68582073 | Msa0517060:CDS | 70.0% |
| GGCGGCGGCGACGAAGAAGA+AGG | - | chr3_4:68582069-68582088 | Msa0517060:exon | 70.0% | |
| ! | GGCACCTTGAGCGGCGCTGG+TGG | + | chr3_4:68577459-68577478 | None:intergenic | 75.0% |
| AGCGGCACCTTGAGCGGCGC+TGG | + | chr3_4:68577462-68577481 | None:intergenic | 75.0% | |
| !! | GGCGGTGGTGCTGGTGGTGG+TGG | + | chr3_4:68581890-68581909 | None:intergenic | 75.0% |
| !! | GTGGGCGGTGGTGCTGGTGG+TGG | + | chr3_4:68581893-68581912 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 68577250 | 68582122 | 68577250 | ID=Msa0517060;Name=Msa0517060 |
| chr3_4 | mRNA | 68577250 | 68582122 | 68577250 | ID=Msa0517060-mRNA-1;Parent=Msa0517060;Name=Msa0517060-mRNA-1;_AED=0.24;_eAED=0.24;_QI=46|0.83|0.71|0.85|1|1|7|0|307 |
| chr3_4 | exon | 68577250 | 68577386 | 68577250 | ID=Msa0517060-mRNA-1:exon:18133;Parent=Msa0517060-mRNA-1 |
| chr3_4 | exon | 68578112 | 68578146 | 68578112 | ID=Msa0517060-mRNA-1:exon:18132;Parent=Msa0517060-mRNA-1 |
| chr3_4 | exon | 68578224 | 68578286 | 68578224 | ID=Msa0517060-mRNA-1:exon:18131;Parent=Msa0517060-mRNA-1 |
| chr3_4 | exon | 68578387 | 68578535 | 68578387 | ID=Msa0517060-mRNA-1:exon:18130;Parent=Msa0517060-mRNA-1 |
| chr3_4 | exon | 68579424 | 68579550 | 68579424 | ID=Msa0517060-mRNA-1:exon:18129;Parent=Msa0517060-mRNA-1 |
| chr3_4 | exon | 68581565 | 68581680 | 68581565 | ID=Msa0517060-mRNA-1:exon:18128;Parent=Msa0517060-mRNA-1 |
| chr3_4 | exon | 68581780 | 68582122 | 68581780 | ID=Msa0517060-mRNA-1:exon:18127;Parent=Msa0517060-mRNA-1 |
| chr3_4 | five_prime_UTR | 68582077 | 68582122 | 68582077 | ID=Msa0517060-mRNA-1:five_prime_utr;Parent=Msa0517060-mRNA-1 |
| chr3_4 | CDS | 68581780 | 68582076 | 68581780 | ID=Msa0517060-mRNA-1:cds;Parent=Msa0517060-mRNA-1 |
| chr3_4 | CDS | 68581565 | 68581680 | 68581565 | ID=Msa0517060-mRNA-1:cds;Parent=Msa0517060-mRNA-1 |
| chr3_4 | CDS | 68579424 | 68579550 | 68579424 | ID=Msa0517060-mRNA-1:cds;Parent=Msa0517060-mRNA-1 |
| chr3_4 | CDS | 68578387 | 68578535 | 68578387 | ID=Msa0517060-mRNA-1:cds;Parent=Msa0517060-mRNA-1 |
| chr3_4 | CDS | 68578224 | 68578286 | 68578224 | ID=Msa0517060-mRNA-1:cds;Parent=Msa0517060-mRNA-1 |
| chr3_4 | CDS | 68578112 | 68578146 | 68578112 | ID=Msa0517060-mRNA-1:cds;Parent=Msa0517060-mRNA-1 |
| chr3_4 | CDS | 68577250 | 68577386 | 68577250 | ID=Msa0517060-mRNA-1:cds;Parent=Msa0517060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
