AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0300350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0300350 MtrunA17_Chr2g0325151 100.000 223 0 0 1 223 1 223 4.44e-168 461
Msa0300350 MtrunA17_Chr3g0128921 98.649 222 3 0 1 222 1 222 1.02e-165 456
Msa0300350 MtrunA17_Chr3g0108371 93.119 218 15 0 1 218 1 218 2.85e-152 421
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0300350 AT1G26910.1 88.991 218 24 0 1 218 1 218 1.35e-146 407
Msa0300350 AT1G14320.1 88.532 218 25 0 1 218 1 218 2.16e-145 404
Msa0300350 AT1G66580.1 88.128 219 26 0 1 219 1 219 7.56e-145 403
Msa0300350 AT1G26910.2 87.845 181 22 0 38 218 1 181 9.68e-118 333
Msa0300350 AT1G14320.2 76.596 94 20 1 127 218 31 124 1.19e-45 148
Msa0300350 AT1G14320.2 97.436 39 1 0 38 76 1 39 1.96e-20 83.6

Find 89 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATCTATATATATATTT+AGG 0.110733 2_3:+55691835 None:intergenic
CCACGACAGAATCGTGATTT+TGG 0.179385 2_3:+55689952 None:intergenic
ACGACTCAATTCTCACAAAA+TGG 0.201618 2_3:-55688691 Msa0300350:three_prime_UTR
TATATATATATTTAGGGTTT+AGG 0.247570 2_3:+55691842 None:intergenic
TATATTTAGGGTTTAGGTTT+TGG 0.252043 2_3:+55691848 None:intergenic
AAATTATGGATATAGATTTA+TGG 0.263435 2_3:-55691895 Msa0300350:five_prime_UTR
TTCTCACATCAAATACTAAA+AGG 0.270230 2_3:+55688793 None:intergenic
AAACCACGTTCAAGAAATTA+TGG 0.291184 2_3:-55691909 Msa0300350:five_prime_UTR
AAAATCTATATATATATTTA+GGG 0.301012 2_3:+55691836 None:intergenic
ACATCGTAAATCCTGATCTT+AGG 0.319740 2_3:+55689919 None:intergenic
CGTGAGATTGCAAGTAGATT+TGG 0.321079 2_3:+55688711 None:intergenic
CTTTGACATGTACTTGTTGC+AGG 0.330350 2_3:+55689792 None:intergenic
TTGGTTAGATACTGGGCTTA+TGG 0.352344 2_3:+55691867 None:intergenic
GTTTCCTTTCTGTGTTCATC+TGG 0.355959 2_3:-55689869 Msa0300350:CDS
CTGTGTTCATCTGGTCAGTT+GGG 0.370061 2_3:-55689860 Msa0300350:CDS
ACTGGTATGAGAGGTGCTTT+TGG 0.372976 2_3:-55689667 Msa0300350:CDS
ATGCATTCCACTTGAGAGTC+AGG 0.376262 2_3:-55689756 Msa0300350:CDS
GTTTGTGCTAGAGTGGCTAT+TGG 0.382737 2_3:-55689631 Msa0300350:CDS
TTTCATGTGCTGGTGCTGAT+AGG 0.390293 2_3:-55689696 Msa0300350:CDS
TCTGTGTTCATCTGGTCAGT+TGG 0.393251 2_3:-55689861 Msa0300350:CDS
GGTTCAGTTTCTCTGAGAAT+TGG 0.395180 2_3:-55688669 Msa0300350:three_prime_UTR
CAAGGAACGCAGCGCAGCCA+TGG 0.401788 2_3:-55691765 Msa0300350:exon
ACCTTAGCATTCACCCCATC+GGG 0.415318 2_3:+55689305 None:intergenic
TTTGTGCTAGAGTGGCTATT+GGG 0.420431 2_3:-55689630 Msa0300350:CDS
TTGCAGCTTCTTGGATGCCA+TGG 0.430564 2_3:-55689058 Msa0300350:intron
CGACTCAATTCTCACAAAAT+GGG 0.447416 2_3:-55688690 Msa0300350:three_prime_UTR
TTAGATACTGGGCTTATGGA+TGG 0.448359 2_3:+55691871 None:intergenic
CGATGTTGGCATGAAGAAGA+AGG 0.456800 2_3:-55689902 Msa0300350:CDS
TGAGTATCTGAAGTTGAAAT+CGG 0.458837 2_3:-55689342 Msa0300350:CDS
CATGTCAAAGTTTGCAGGAA+AGG 0.460338 2_3:-55689779 Msa0300350:CDS
ATGGCTTGTTCTTAATTTGA+CGG 0.461186 2_3:+55689977 None:intergenic
CGTGCTAAGTTTAAGTTCCC+TGG 0.464822 2_3:-55689544 Msa0300350:CDS
CAATTGCAAGAATGAATATG+AGG 0.466326 2_3:-55688924 Msa0300350:three_prime_UTR
TGCTAGAGTGGCTATTGGGC+AGG 0.472691 2_3:-55689626 Msa0300350:CDS
AAGTACATGTCAAAGTTTGC+AGG 0.473692 2_3:-55689784 Msa0300350:CDS
TCTTGGATGCCATGGACCAT+TGG 0.486612 2_3:-55689050 Msa0300350:CDS
TAAATCCTGATCTTAGGATC+AGG 0.495721 2_3:+55689925 None:intergenic
TACCTTAGCATTCACCCCAT+CGG 0.499742 2_3:+55689304 None:intergenic
GAACTCAAATTAACAAAGTA+CGG 0.499868 2_3:+55688889 None:intergenic
TGCCAGCTGTAATGAGGCTT+AGG 0.501937 2_3:-55688996 Msa0300350:exon
TTTGAATGCCAGCTGTAATG+AGG 0.503491 2_3:-55689002 Msa0300350:CDS
AAGGAACGCAGCGCAGCCAT+GGG 0.507562 2_3:-55691764 Msa0300350:exon
TTAGGTCTTACTTCTTCCCA+TGG 0.509780 2_3:+55691748 None:intergenic
TAACATAAATCATAAATTCA+AGG 0.511918 2_3:+55688842 None:intergenic
TCTTGTTGATCCTGAGTACA+TGG 0.512666 2_3:+55689722 None:intergenic
AACAAGATGCTTTCATGTGC+TGG 0.512686 2_3:-55689706 Msa0300350:CDS
CCATTGGCTAACCGTCAACC+TGG 0.512794 2_3:-55689034 Msa0300350:CDS
CAACAACAGCCACCATGCTC+AGG 0.521206 2_3:-55689578 Msa0300350:CDS
TCAAAGAGACCAAATCTCAA+TGG 0.524148 2_3:+55688760 None:intergenic
GCTCCTTTCTGTCCGTTGCA+AGG 0.530827 2_3:-55689602 Msa0300350:CDS
AGATCATCGTTAGCAGGAAG+TGG 0.534059 2_3:-55689513 Msa0300350:intron
AGCCTAAGCCTCATTACAGC+TGG 0.535691 2_3:+55688994 None:intergenic
GTCAAAAGATCATCGTTAGC+AGG 0.537568 2_3:-55689519 Msa0300350:CDS
TGTCCTTGCAACGGACAGAA+AGG 0.541207 2_3:+55689599 None:intergenic
GAGTTCCTGATCCTAAGATC+AGG 0.544600 2_3:-55689930 Msa0300350:CDS
CCAGGTTGACGGTTAGCCAA+TGG 0.544617 2_3:+55689034 None:intergenic
TCAGGGTGTTTGTGCTAGAG+TGG 0.548804 2_3:-55689638 Msa0300350:CDS
AAAACAGAATTATGCCCGAT+GGG 0.552482 2_3:-55689319 Msa0300350:CDS
GACGGAGAGCCTCCTGAGCA+TGG 0.554611 2_3:+55689566 None:intergenic
AAGATCAGGATTTACGATGT+TGG 0.557539 2_3:-55689916 Msa0300350:CDS
CAAGATTGATTTGATTTGTG+CGG 0.558004 2_3:+55691808 None:intergenic
GACGGTTAGCCAATGGTCCA+TGG 0.564761 2_3:+55689041 None:intergenic
GGCTGTTGTTGTCCTTGCAA+CGG 0.568368 2_3:+55689590 None:intergenic
GGTGCTGATAGGCTTCAAAC+TGG 0.570540 2_3:-55689685 Msa0300350:CDS
TCATCTGGTCAGTTGGGAGA+AGG 0.572889 2_3:-55689854 Msa0300350:CDS
CTGACCAGATGAACACAGAA+AGG 0.573863 2_3:+55689865 None:intergenic
AGGAGACAGCACAGGACGCA+AGG 0.573942 2_3:-55691783 Msa0300350:five_prime_UTR
ATTTGACGGTAACACCTAGC+AGG 0.579048 2_3:+55689991 None:intergenic
TAGATACTGGGCTTATGGAT+GGG 0.579484 2_3:+55691872 None:intergenic
TCAACTTCAGATACTCAGCT+CGG 0.581935 2_3:+55689348 None:intergenic
GCCCGATGGGGTGAATGCTA+AGG 0.582072 2_3:-55689306 Msa0300350:intron
TTCATCCATTCCATGTACTC+AGG 0.583517 2_3:-55689732 Msa0300350:CDS
TGCATTCCACTTGAGAGTCA+GGG 0.588140 2_3:-55689755 Msa0300350:CDS
CAACAGCCACCATGCTCAGG+AGG 0.593303 2_3:-55689575 Msa0300350:CDS
GTGAGGCACTTGAAGCTGCT+AGG 0.594487 2_3:-55689819 Msa0300350:CDS
CAAATCAAATCAATCTTGCA+AGG 0.595587 2_3:-55691803 Msa0300350:five_prime_UTR
GATGAACCCTGACTCTCAAG+TGG 0.599276 2_3:+55689749 None:intergenic
AGGCTTCAAACTGGTATGAG+AGG 0.600097 2_3:-55689676 Msa0300350:CDS
TATCCATAATTTCTTGAACG+TGG 0.619070 2_3:+55691906 None:intergenic
CCAAAATCACGATTCTGTCG+TGG 0.626637 2_3:-55689952 Msa0300350:CDS
GAAAACAGAATTATGCCCGA+TGG 0.626773 2_3:-55689320 Msa0300350:CDS
TTGATCCTGAGTACATGGAA+TGG 0.632244 2_3:+55689727 None:intergenic
GATGTTGGCATGAAGAAGAA+GGG 0.638141 2_3:-55689901 Msa0300350:CDS
GAAGGAAAATGTCTCAAGTG+AGG 0.670840 2_3:-55689836 Msa0300350:CDS
ATCTTGCAAGGAGACAGCAC+AGG 0.680122 2_3:-55691791 Msa0300350:five_prime_UTR
AAACAGAATTATGCCCGATG+GGG 0.689778 2_3:-55689318 Msa0300350:CDS
GGAGAGCCTCCTGAGCATGG+TGG 0.689789 2_3:+55689569 None:intergenic
GGAACTTAAACTTAGCACGA+CGG 0.721521 2_3:+55689548 None:intergenic
ACTCTAGCACAAACACCCTG+AGG 0.744760 2_3:+55689640 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAATCTATATATATATTT+AGG + chr2_3:55688674-55688693 None:intergenic 10.0%
!! TGTAACAAATAATATATTAA+GGG + chr2_3:55689251-55689270 None:intergenic 10.0%
!!! TATTTTGAAATATTAGTTTT+TGG - chr2_3:55691542-55691561 Msa0300350:intron 10.0%
!!! ATTTATGTTATATTTTGTTA+TGG - chr2_3:55691677-55691696 Msa0300350:intron 10.0%
!! AATTAAAAAAAAAATCTAGT+TGG + chr2_3:55691913-55691932 None:intergenic 10.0%
!! AAATTATGGATATAGATTTA+TGG - chr2_3:55688611-55688630 Msa0300350:three_prime_UTR 15.0%
!!! TATATATATATTTAGGGTTT+AGG + chr2_3:55688667-55688686 None:intergenic 15.0%
!!! TGATTTGTGATTTAAAATTT+AGG - chr2_3:55688987-55689006 Msa0300350:exon 15.0%
!!! GATTTGTGATTTAAAATTTA+GGG - chr2_3:55688988-55689007 Msa0300350:exon 15.0%
!! TTAAATTAATTGAGAATTTG+AGG - chr2_3:55689123-55689142 Msa0300350:intron 15.0%
!! CTGTAACAAATAATATATTA+AGG + chr2_3:55689252-55689271 None:intergenic 15.0%
!! TTACATTCAAAATATAAACA+GGG + chr2_3:55689911-55689930 None:intergenic 15.0%
!! TTTCATAAAAATTAGTACTT+GGG + chr2_3:55690166-55690185 None:intergenic 15.0%
!! ATTTCATAAAAATTAGTACT+TGG + chr2_3:55690167-55690186 None:intergenic 15.0%
!!! ATCATGTTTGTTTTATTTAT+AGG - chr2_3:55690491-55690510 Msa0300350:intron 15.0%
!!! TCATGTTTGTTTTATTTATA+GGG - chr2_3:55690492-55690511 Msa0300350:intron 15.0%
!! TAACATAAATCATAAATTCA+AGG + chr2_3:55691667-55691686 None:intergenic 15.0%
!!! TAGATTTTTTTTTTAATTGC+TGG - chr2_3:55691915-55691934 Msa0300350:five_prime_UTR 15.0%
!! GAAATGAATGAAAATTAGAA+GGG + chr2_3:55688786-55688805 None:intergenic 20.0%
!! AGAAATGAATGAAAATTAGA+AGG + chr2_3:55688787-55688806 None:intergenic 20.0%
!! AAATGAAATGAAGAAACAAA+TGG + chr2_3:55688836-55688855 None:intergenic 20.0%
!! ATTGAAATAAAACGAATTCA+TGG + chr2_3:55688859-55688878 None:intergenic 20.0%
!!! AGATATGATGATGTTTATAT+TGG - chr2_3:55688887-55688906 Msa0300350:three_prime_UTR 20.0%
!! AAAGGTTTACTAAAACATAA+AGG + chr2_3:55689411-55689430 None:intergenic 20.0%
!!! ACCTTTTTGATTTTTTATTG+CGG - chr2_3:55689425-55689444 Msa0300350:intron 20.0%
!! AATGATGATATTTATCCATA+CGG - chr2_3:55689607-55689626 Msa0300350:CDS 20.0%
!! GTTACATTCAAAATATAAAC+AGG + chr2_3:55689912-55689931 None:intergenic 20.0%
!! CTATAATTAGAATTAGTACT+TGG + chr2_3:55689934-55689953 None:intergenic 20.0%
!!! TGAATGTCATGATATTTTAA+TGG - chr2_3:55690399-55690418 Msa0300350:intron 20.0%
!! CAATAATTAGAGTTAATACA+TGG + chr2_3:55691099-55691118 None:intergenic 20.0%
!!! ATGTTAGTTTGGAATATATT+AGG - chr2_3:55691314-55691333 Msa0300350:intron 20.0%
!!! TGTTAGTTTGGAATATATTA+GGG - chr2_3:55691315-55691334 Msa0300350:intron 20.0%
!!! AAAAGAACTTATAAGTTGAA+AGG + chr2_3:55691422-55691441 None:intergenic 20.0%
!! TATTTGATGTGAGAAAAAAA+AGG - chr2_3:55691721-55691740 Msa0300350:intron 20.0%
!!! TATATTTAGGGTTTAGGTTT+TGG + chr2_3:55688661-55688680 None:intergenic 25.0%
! ATGAAAATTAGAAGGGAATT+AGG + chr2_3:55688779-55688798 None:intergenic 25.0%
! AAAAATAAGCTAATCCAAAC+GGG + chr2_3:55689186-55689205 None:intergenic 25.0%
! CAAAAATAAGCTAATCCAAA+CGG + chr2_3:55689187-55689206 None:intergenic 25.0%
! TAATATATTAAGGGTCTGTT+TGG + chr2_3:55689242-55689261 None:intergenic 25.0%
! ATGATTATCCTATTATTGTG+TGG - chr2_3:55689303-55689322 Msa0300350:intron 25.0%
! GAACTAACAAACAATTACAA+TGG + chr2_3:55689329-55689348 None:intergenic 25.0%
! ACCGCAATAAAAAATCAAAA+AGG + chr2_3:55689429-55689448 None:intergenic 25.0%
! TCCATTATGTATTATGTGTT+GGG + chr2_3:55689525-55689544 None:intergenic 25.0%
!! TATCTTGACATTTCGTTTTA+CGG - chr2_3:55689813-55689832 Msa0300350:CDS 25.0%
! ACAGTATAATCAGAATAGTA+AGG + chr2_3:55690035-55690054 None:intergenic 25.0%
!! GTGATATTTCTGAATAATCA+CGG + chr2_3:55690282-55690301 None:intergenic 25.0%
! TAACTTGAATCATGTTAGTT+TGG - chr2_3:55691303-55691322 Msa0300350:intron 25.0%
! GAACTCAAATTAACAAAGTA+CGG + chr2_3:55691620-55691639 None:intergenic 25.0%
! TTCTCACATCAAATACTAAA+AGG + chr2_3:55691716-55691735 None:intergenic 25.0%
AAACCACGTTCAAGAAATTA+TGG - chr2_3:55688597-55688616 Msa0300350:three_prime_UTR 30.0%
TATCCATAATTTCTTGAACG+TGG + chr2_3:55688603-55688622 None:intergenic 30.0%
!!! TTAGGTTTTGGTTAGATACT+GGG + chr2_3:55688649-55688668 None:intergenic 30.0%
!!! TTTAGGTTTTGGTTAGATAC+TGG + chr2_3:55688650-55688669 None:intergenic 30.0%
!! CAAGATTGATTTGATTTGTG+CGG + chr2_3:55688701-55688720 None:intergenic 30.0%
CAAATCAAATCAATCTTGCA+AGG - chr2_3:55688703-55688722 Msa0300350:three_prime_UTR 30.0%
CGTTGTTTATTGATGAATTC+AGG - chr2_3:55689366-55689385 Msa0300350:CDS 30.0%
ATTGATGAATTCAGGATCTT+AGG - chr2_3:55689374-55689393 Msa0300350:intron 30.0%
!!! TTGATTTTTTATTGCGGTAG+TGG - chr2_3:55689431-55689450 Msa0300350:intron 30.0%
TAGTAAGATCAAATTGAGCA+TGG + chr2_3:55689497-55689516 None:intergenic 30.0%
TCCCAACACATAATACATAA+TGG - chr2_3:55689521-55689540 Msa0300350:CDS 30.0%
CTCCATTATGTATTATGTGT+TGG + chr2_3:55689526-55689545 None:intergenic 30.0%
! CTATCATTCTTTGTTGTCTT+TGG - chr2_3:55689559-55689578 Msa0300350:CDS 30.0%
! ATCTTGACATTTCGTTTTAC+GGG - chr2_3:55689814-55689833 Msa0300350:CDS 30.0%
AACAGGGAATTAGTAACAAT+AGG + chr2_3:55689895-55689914 None:intergenic 30.0%
TCCAAAATATCACCATCTTT+CGG - chr2_3:55690061-55690080 Msa0300350:intron 30.0%
TTAGTACTTGGGTATATCTA+TGG + chr2_3:55690155-55690174 None:intergenic 30.0%
ACGGTATAATCAGAATAGTA+AGG + chr2_3:55690263-55690282 None:intergenic 30.0%
TCAGAAATATCACCATCTTT+CGG - chr2_3:55690289-55690308 Msa0300350:intron 30.0%
!! ATGGCTTGTTCTTAATTTGA+CGG + chr2_3:55690532-55690551 None:intergenic 30.0%
ACAAATCTACAATCGAAGTA+AGG + chr2_3:55691044-55691063 None:intergenic 30.0%
TTGTTTGTAATGCTTCTTCA+GGG - chr2_3:55691119-55691138 Msa0300350:intron 30.0%
! TGAGTATCTGAAGTTGAAAT+CGG - chr2_3:55691164-55691183 Msa0300350:intron 30.0%
! ATATTTTCTTCCTCATGCTA+AGG - chr2_3:55691265-55691284 Msa0300350:intron 30.0%
AATCTGTTTGAACACTCAAA+TGG - chr2_3:55691360-55691379 Msa0300350:intron 30.0%
CAATTGCAAGAATGAATATG+AGG - chr2_3:55691582-55691601 Msa0300350:intron 30.0%
AAAAAGGTTCCATTGAGATT+TGG - chr2_3:55691737-55691756 Msa0300350:intron 30.0%
GAGAGATCAGAAATTGGAAA+GGG + chr2_3:55688943-55688962 None:intergenic 35.0%
AGAGAGATCAGAAATTGGAA+AGG + chr2_3:55688944-55688963 None:intergenic 35.0%
CTGAAAGAGAGATCAGAAAT+TGG + chr2_3:55688949-55688968 None:intergenic 35.0%
TATTAAGGGTCTGTTTGGAT+TGG + chr2_3:55689237-55689256 None:intergenic 35.0%
TACAATGGCCACACAATAAT+AGG + chr2_3:55689314-55689333 None:intergenic 35.0%
!!! TGTTCGTCAACTTTTTTACC+AGG - chr2_3:55689462-55689481 Msa0300350:intron 35.0%
TCATCAAAAACAGAACCGTA+TGG + chr2_3:55689625-55689644 None:intergenic 35.0%
TGCGTCATGTATATTGTCTA+TGG - chr2_3:55689757-55689776 Msa0300350:CDS 35.0%
! TCTTGACATTTCGTTTTACG+GGG - chr2_3:55689815-55689834 Msa0300350:CDS 35.0%
! GGGATAGATCAAACTTTTAC+AGG - chr2_3:55689835-55689854 Msa0300350:CDS 35.0%
!! TTTTATTTATAGGGCCTGCT+AGG - chr2_3:55690501-55690520 Msa0300350:intron 35.0%
! CAGAATCGTGATTTTGGATA+TGG + chr2_3:55690551-55690570 None:intergenic 35.0%
TAAATCCTGATCTTAGGATC+AGG + chr2_3:55690584-55690603 None:intergenic 35.0%
ACATCGTAAATCCTGATCTT+AGG + chr2_3:55690590-55690609 None:intergenic 35.0%
AAGATCAGGATTTACGATGT+TGG - chr2_3:55690590-55690609 Msa0300350:intron 35.0%
AAGTACATGTCAAAGTTTGC+AGG - chr2_3:55690722-55690741 Msa0300350:intron 35.0%
! TGCTAACGATGATCTTTTGA+CGG + chr2_3:55690988-55691007 None:intergenic 35.0%
TCGATTGTAGATTTGTAGTC+TGG - chr2_3:55691048-55691067 Msa0300350:intron 35.0%
CGATTGTAGATTTGTAGTCT+GGG - chr2_3:55691049-55691068 Msa0300350:intron 35.0%
GTTGTTTGTAATGCTTCTTC+AGG - chr2_3:55691118-55691137 Msa0300350:intron 35.0%
TGTTTGTAATGCTTCTTCAG+GGG - chr2_3:55691120-55691139 Msa0300350:intron 35.0%
AAAACAGAATTATGCCCGAT+GGG - chr2_3:55691187-55691206 Msa0300350:intron 35.0%
! TTTGTGATTTTGCAGCTTCT+TGG - chr2_3:55691439-55691458 Msa0300350:intron 35.0%
TCAAAGAGACCAAATCTCAA+TGG + chr2_3:55691749-55691768 None:intergenic 35.0%
ACGACTCAATTCTCACAAAA+TGG - chr2_3:55691815-55691834 Msa0300350:five_prime_UTR 35.0%
CGACTCAATTCTCACAAAAT+GGG - chr2_3:55691816-55691835 Msa0300350:five_prime_UTR 35.0%
TAGATACTGGGCTTATGGAT+GGG + chr2_3:55688637-55688656 None:intergenic 40.0%
TTAGATACTGGGCTTATGGA+TGG + chr2_3:55688638-55688657 None:intergenic 40.0%
TTGGTTAGATACTGGGCTTA+TGG + chr2_3:55688642-55688661 None:intergenic 40.0%
TTAGGTCTTACTTCTTCCCA+TGG + chr2_3:55688761-55688780 None:intergenic 40.0%
! TTTTGAATCAAGTGCCCGTT+TGG - chr2_3:55689169-55689188 Msa0300350:intron 40.0%
! ATAGCTTGCAAGAGATCAGA+TGG + chr2_3:55689666-55689685 None:intergenic 40.0%
! GCCGAAAGATGGTGATATTT+TGG + chr2_3:55690065-55690084 None:intergenic 40.0%
GATGTTGGCATGAAGAAGAA+GGG - chr2_3:55690605-55690624 Msa0300350:intron 40.0%
GTTTCCTTTCTGTGTTCATC+TGG - chr2_3:55690637-55690656 Msa0300350:intron 40.0%
GAAGGAAAATGTCTCAAGTG+AGG - chr2_3:55690670-55690689 Msa0300350:intron 40.0%
! CTTTGACATGTACTTGTTGC+AGG + chr2_3:55690717-55690736 None:intergenic 40.0%
CATGTCAAAGTTTGCAGGAA+AGG - chr2_3:55690727-55690746 Msa0300350:intron 40.0%
TTCATCCATTCCATGTACTC+AGG - chr2_3:55690774-55690793 Msa0300350:intron 40.0%
TTGATCCTGAGTACATGGAA+TGG + chr2_3:55690782-55690801 None:intergenic 40.0%
TCTTGTTGATCCTGAGTACA+TGG + chr2_3:55690787-55690806 None:intergenic 40.0%
AACAAGATGCTTTCATGTGC+TGG - chr2_3:55690800-55690819 Msa0300350:intron 40.0%
TTTGTGCTAGAGTGGCTATT+GGG - chr2_3:55690876-55690895 Msa0300350:intron 40.0%
GGAACTTAAACTTAGCACGA+CGG + chr2_3:55690961-55690980 None:intergenic 40.0%
GTCAAAAGATCATCGTTAGC+AGG - chr2_3:55690987-55691006 Msa0300350:intron 40.0%
! TTTGTAGTCTGGGATTACTC+TGG - chr2_3:55691059-55691078 Msa0300350:intron 40.0%
TCAACTTCAGATACTCAGCT+CGG + chr2_3:55691161-55691180 None:intergenic 40.0%
GAAAACAGAATTATGCCCGA+TGG - chr2_3:55691186-55691205 Msa0300350:intron 40.0%
AAACAGAATTATGCCCGATG+GGG - chr2_3:55691188-55691207 Msa0300350:intron 40.0%
AAGTACATGTCCTTAGCATG+AGG + chr2_3:55691278-55691297 None:intergenic 40.0%
! AAAAAGCTCTTCCAGGTTGA+CGG + chr2_3:55691486-55691505 None:intergenic 40.0%
GCATTCAAAAAAGCTCTTCC+AGG + chr2_3:55691493-55691512 None:intergenic 40.0%
TTTGAATGCCAGCTGTAATG+AGG - chr2_3:55691504-55691523 Msa0300350:intron 40.0%
CGTGAGATTGCAAGTAGATT+TGG + chr2_3:55691798-55691817 None:intergenic 40.0%
! GGTTCAGTTTCTCTGAGAAT+TGG - chr2_3:55691837-55691856 Msa0300350:five_prime_UTR 40.0%
GTCACGGTGAATCAGAAACA+CGG + chr2_3:55688914-55688933 None:intergenic 45.0%
TTGGAAAGGGTTGTCTGTCA+CGG + chr2_3:55688930-55688949 None:intergenic 45.0%
! TTTTACAGGTCTTGCGACAC+AGG - chr2_3:55689849-55689868 Msa0300350:CDS 45.0%
ATGCAATCTCAGCCGAAAGA+TGG + chr2_3:55690304-55690323 None:intergenic 45.0%
ATTTGACGGTAACACCTAGC+AGG + chr2_3:55690518-55690537 None:intergenic 45.0%
! CCACGACAGAATCGTGATTT+TGG + chr2_3:55690557-55690576 None:intergenic 45.0%
CCAAAATCACGATTCTGTCG+TGG - chr2_3:55690554-55690573 Msa0300350:intron 45.0%
GAGTTCCTGATCCTAAGATC+AGG - chr2_3:55690576-55690595 Msa0300350:intron 45.0%
CGATGTTGGCATGAAGAAGA+AGG - chr2_3:55690604-55690623 Msa0300350:intron 45.0%
CTGACCAGATGAACACAGAA+AGG + chr2_3:55690644-55690663 None:intergenic 45.0%
TCTGTGTTCATCTGGTCAGT+TGG - chr2_3:55690645-55690664 Msa0300350:intron 45.0%
CTGTGTTCATCTGGTCAGTT+GGG - chr2_3:55690646-55690665 Msa0300350:intron 45.0%
ATGCATTCCACTTGAGAGTC+AGG - chr2_3:55690750-55690769 Msa0300350:intron 45.0%
TGCATTCCACTTGAGAGTCA+GGG - chr2_3:55690751-55690770 Msa0300350:intron 45.0%
!! TTTCATGTGCTGGTGCTGAT+AGG - chr2_3:55690810-55690829 Msa0300350:intron 45.0%
AGGCTTCAAACTGGTATGAG+AGG - chr2_3:55690830-55690849 Msa0300350:intron 45.0%
!!! ACTGGTATGAGAGGTGCTTT+TGG - chr2_3:55690839-55690858 Msa0300350:intron 45.0%
GTTTGTGCTAGAGTGGCTAT+TGG - chr2_3:55690875-55690894 Msa0300350:intron 45.0%
! CGTGCTAAGTTTAAGTTCCC+TGG - chr2_3:55690962-55690981 Msa0300350:intron 45.0%
AGATCATCGTTAGCAGGAAG+TGG - chr2_3:55690993-55691012 Msa0300350:intron 45.0%
TACCTTAGCATTCACCCCAT+CGG + chr2_3:55691205-55691224 None:intergenic 45.0%
!! AAAATCTATATATATATTTA+GGG + chr2_3:55688673-55688692 None:intergenic 5.0%
ATCTTGCAAGGAGACAGCAC+AGG - chr2_3:55688715-55688734 Msa0300350:three_prime_UTR 50.0%
CTGCAATCTCAGCCGAAAGA+TGG + chr2_3:55690076-55690095 None:intergenic 50.0%
TCATCTGGTCAGTTGGGAGA+AGG - chr2_3:55690652-55690671 Msa0300350:intron 50.0%
GATGAACCCTGACTCTCAAG+TGG + chr2_3:55690760-55690779 None:intergenic 50.0%
!! GGTGCTGATAGGCTTCAAAC+TGG - chr2_3:55690821-55690840 Msa0300350:intron 50.0%
! AGGTGCTTTTGGTAAGCCTC+AGG - chr2_3:55690850-55690869 Msa0300350:intron 50.0%
! GGTGCTTTTGGTAAGCCTCA+GGG - chr2_3:55690851-55690870 Msa0300350:intron 50.0%
ACTCTAGCACAAACACCCTG+AGG + chr2_3:55690869-55690888 None:intergenic 50.0%
! TCAGGGTGTTTGTGCTAGAG+TGG - chr2_3:55690868-55690887 Msa0300350:intron 50.0%
TGTCCTTGCAACGGACAGAA+AGG + chr2_3:55690910-55690929 None:intergenic 50.0%
GGCTGTTGTTGTCCTTGCAA+CGG + chr2_3:55690919-55690938 None:intergenic 50.0%
! CGATGATCTTTTGACGGCCA+GGG + chr2_3:55690982-55691001 None:intergenic 50.0%
! ACGATGATCTTTTGACGGCC+AGG + chr2_3:55690983-55691002 None:intergenic 50.0%
ACCTTAGCATTCACCCCATC+GGG + chr2_3:55691204-55691223 None:intergenic 50.0%
TTGCAGCTTCTTGGATGCCA+TGG - chr2_3:55691448-55691467 Msa0300350:intron 50.0%
TCTTGGATGCCATGGACCAT+TGG - chr2_3:55691456-55691475 Msa0300350:intron 50.0%
TGCCAGCTGTAATGAGGCTT+AGG - chr2_3:55691510-55691529 Msa0300350:intron 50.0%
AGCCTAAGCCTCATTACAGC+TGG + chr2_3:55691515-55691534 None:intergenic 50.0%
TGAGCATGGCAAACAGTGCC+TGG + chr2_3:55689483-55689502 None:intergenic 55.0%
! GTGAGGCACTTGAAGCTGCT+AGG - chr2_3:55690687-55690706 Msa0300350:intron 55.0%
TGCTAGAGTGGCTATTGGGC+AGG - chr2_3:55690880-55690899 Msa0300350:intron 55.0%
GCTCCTTTCTGTCCGTTGCA+AGG - chr2_3:55690904-55690923 Msa0300350:intron 55.0%
CAACAACAGCCACCATGCTC+AGG - chr2_3:55690928-55690947 Msa0300350:intron 55.0%
! GACGGTTAGCCAATGGTCCA+TGG + chr2_3:55691468-55691487 None:intergenic 55.0%
! CCAGGTTGACGGTTAGCCAA+TGG + chr2_3:55691475-55691494 None:intergenic 55.0%
! CCATTGGCTAACCGTCAACC+TGG - chr2_3:55691472-55691491 Msa0300350:intron 55.0%
AGGAGACAGCACAGGACGCA+AGG - chr2_3:55688723-55688742 Msa0300350:three_prime_UTR 60.0%
AAGGAACGCAGCGCAGCCAT+GGG - chr2_3:55688742-55688761 Msa0300350:three_prime_UTR 60.0%
CAACAGCCACCATGCTCAGG+AGG - chr2_3:55690931-55690950 Msa0300350:intron 60.0%
GCCCGATGGGGTGAATGCTA+AGG - chr2_3:55691200-55691219 Msa0300350:intron 60.0%
CAAGGAACGCAGCGCAGCCA+TGG - chr2_3:55688741-55688760 Msa0300350:three_prime_UTR 65.0%
GGAGAGCCTCCTGAGCATGG+TGG + chr2_3:55690940-55690959 None:intergenic 65.0%
GACGGAGAGCCTCCTGAGCA+TGG + chr2_3:55690943-55690962 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 55688574 55691954 55688574 ID=Msa0300350;Name=Msa0300350
chr2_3 mRNA 55688574 55691954 55688574 ID=Msa0300350-mRNA-1;Parent=Msa0300350;Name=Msa0300350-mRNA-1;_AED=0.01;_eAED=0.01;_QI=186|1|1|1|1|1|4|423|223
chr2_3 exon 55688574 55689074 55688574 ID=Msa0300350-mRNA-1:exon:17830;Parent=Msa0300350-mRNA-1
chr2_3 exon 55689307 55689388 55689307 ID=Msa0300350-mRNA-1:exon:17829;Parent=Msa0300350-mRNA-1
chr2_3 exon 55689514 55690015 55689514 ID=Msa0300350-mRNA-1:exon:17828;Parent=Msa0300350-mRNA-1
chr2_3 exon 55691759 55691954 55691759 ID=Msa0300350-mRNA-1:exon:17827;Parent=Msa0300350-mRNA-1
chr2_3 five_prime_UTR 55691769 55691954 55691769 ID=Msa0300350-mRNA-1:five_prime_utr;Parent=Msa0300350-mRNA-1
chr2_3 CDS 55691759 55691768 55691759 ID=Msa0300350-mRNA-1:cds;Parent=Msa0300350-mRNA-1
chr2_3 CDS 55689514 55690015 55689514 ID=Msa0300350-mRNA-1:cds;Parent=Msa0300350-mRNA-1
chr2_3 CDS 55689307 55689388 55689307 ID=Msa0300350-mRNA-1:cds;Parent=Msa0300350-mRNA-1
chr2_3 CDS 55688997 55689074 55688997 ID=Msa0300350-mRNA-1:cds;Parent=Msa0300350-mRNA-1
chr2_3 three_prime_UTR 55688574 55688996 55688574 ID=Msa0300350-mRNA-1:three_prime_utr;Parent=Msa0300350-mRNA-1
Gene Sequence

>Msa0300350

ATGGGAAGAAGGCCTGCTAGGTGTTACCGTCAAATTAAGAACAAGCCATATCCAAAATCACGATTCTGTCGTGGAGTTCCTGATCCTAAGATCAGGATTTACGATGTTGGCATGAAGAAGAAGGGTGTTGATGAGTTTCCTTTCTGTGTTCATCTGGTCAGTTGGGAGAAGGAAAATGTCTCAAGTGAGGCACTTGAAGCTGCTAGGATTGCCTGCAACAAGTACATGTCAAAGTTTGCAGGAAAGGATGCATTCCACTTGAGAGTCAGGGTTCATCCATTCCATGTACTCAGGATCAACAAGATGCTTTCATGTGCTGGTGCTGATAGGCTTCAAACTGGTATGAGAGGTGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTAGAGTGGCTATTGGGCAGGTGCTCCTTTCTGTCCGTTGCAAGGACAACAACAGCCACCATGCTCAGGAGGCTCTCCGTCGTGCTAAGTTTAAGTTCCCTGGCCGTCAAAAGATCATCGTTAGCAGGAAGTGGGGATTCACAAAGATCAACCGAGCTGAGTATCTGAAGTTGAAATCGGAAAACAGAATTATGCCCGATGGGGTGAATGCTAAGCTTCTTGGATGCCATGGACCATTGGCTAACCGTCAACCTGGAAGAGCTTTTTTGAATGCCAGCTGTAATGAGGCTTAG

Protein sequence

>Msa0300350

MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKINRAEYLKLKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLNASCNEA*