Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207690 | KEH37969.1 | 99.217 | 511 | 4 | 0 | 11 | 521 | 1 | 511 | 0.0 | 1052 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207690 | sp|O48780|KCS11_ARATH | 82.515 | 509 | 88 | 1 | 13 | 521 | 2 | 509 | 0.0 | 898 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207690 | A0A072V7F7 | 99.217 | 511 | 4 | 0 | 11 | 521 | 1 | 511 | 0.0 | 1052 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0140140 | Msa0207690 | 0.811301 | 7.498661e-51 | -8.615850e-47 |
| Msa0198210 | Msa0207690 | 0.822451 | 2.352919e-53 | -8.615850e-47 |
| Msa0207680 | Msa0207690 | 0.959479 | 1.732766e-117 | -8.615850e-47 |
| Msa0207690 | Msa0209360 | 0.906259 | 1.796797e-80 | -8.615850e-47 |
| Msa0207690 | Msa0242820 | 0.836787 | 7.625257e-57 | -8.615850e-47 |
| Msa0207690 | Msa0280470 | 0.806579 | 7.681665e-50 | -8.615850e-47 |
| Msa0207690 | Msa0287640 | 0.832904 | 7.242822e-56 | -8.615850e-47 |
| Msa0207690 | Msa0287660 | 0.851243 | 1.007551e-60 | -8.615850e-47 |
| Msa0207690 | Msa0373050 | 0.810170 | 1.316456e-50 | -8.615850e-47 |
| Msa0207690 | Msa0373060 | 0.819218 | 1.303193e-52 | -8.615850e-47 |
| Msa0207690 | Msa0382460 | 0.802561 | 5.291378e-49 | -8.615850e-47 |
| Msa0207690 | Msa0421580 | 0.818502 | 1.895573e-52 | -8.615850e-47 |
| Msa0207690 | Msa0476960 | 0.825721 | 4.015893e-54 | -8.615850e-47 |
| Msa0207690 | Msa0510120 | 0.813661 | 2.286417e-51 | -8.615850e-47 |
| Msa0207690 | Msa0519360 | 0.803204 | 3.898330e-49 | -8.615850e-47 |
| Msa0207690 | Msa0521890 | 0.800149 | 1.649966e-48 | -8.615850e-47 |
| Msa0207690 | Msa0553950 | 0.821399 | 4.122268e-53 | -8.615850e-47 |
| Msa0207690 | Msa0559660 | 0.843858 | 1.082164e-58 | -8.615850e-47 |
| Msa0207690 | Msa0575380 | 0.815502 | 8.945615e-52 | -8.615850e-47 |
| Msa0207690 | Msa0576180 | 0.814187 | 1.750571e-51 | -8.615850e-47 |
| Msa0207690 | Msa0581370 | 0.812537 | 4.033243e-51 | -8.615850e-47 |
| Msa0207690 | Msa0608050 | 0.826228 | 3.044349e-54 | -8.615850e-47 |
| Msa0207690 | Msa0608060 | 0.856969 | 2.246008e-62 | -8.615850e-47 |
| Msa0207690 | Msa0627580 | 0.841015 | 6.138875e-58 | -8.615850e-47 |
| Msa0207690 | Msa0631820 | 0.800765 | 1.235948e-48 | -8.615850e-47 |
| Msa0207690 | Msa0647320 | 0.834203 | 3.433462e-56 | -8.615850e-47 |
| Msa0207690 | Msa0648440 | 0.854166 | 1.474785e-61 | -8.615850e-47 |
| Msa0207690 | Msa0654420 | 0.852472 | 4.513734e-61 | -8.615850e-47 |
| Msa0207690 | Msa0654480 | 0.868175 | 7.935933e-66 | -8.615850e-47 |
| Msa0207690 | Msa0690190 | 0.813713 | 2.226191e-51 | -8.615850e-47 |
| Msa0207690 | Msa0690930 | 0.858370 | 8.629898e-63 | -8.615850e-47 |
| Msa0207690 | Msa0719740 | 0.859349 | 4.399780e-63 | -8.615850e-47 |
| Msa0207690 | Msa0758400 | 0.852887 | 3.437692e-61 | -8.615850e-47 |
| Msa0207690 | Msa0802750 | 0.862267 | 5.719006e-64 | -8.615850e-47 |
| Msa0207690 | Msa0841060 | 0.846545 | 2.030245e-59 | -8.615850e-47 |
| Msa0207690 | Msa0887100 | -0.841926 | 3.532586e-58 | -8.615850e-47 |
| Msa0207690 | Msa0913140 | -0.809142 | 2.189633e-50 | -8.615850e-47 |
| Msa0207690 | Msa0930210 | 0.857521 | 1.542034e-62 | -8.615850e-47 |
| Msa0207690 | Msa0950470 | -0.800952 | 1.131898e-48 | -8.615850e-47 |
| Msa0207690 | Msa1026770 | 0.845802 | 3.235137e-59 | -8.615850e-47 |
| Msa0207690 | Msa1026800 | 0.846040 | 2.787425e-59 | -8.615850e-47 |
| Msa0207690 | Msa1031180 | 0.804448 | 2.149663e-49 | -8.615850e-47 |
| Msa0207690 | Msa1046740 | 0.800220 | 1.596350e-48 | -8.615850e-47 |
| Msa0207690 | Msa1088160 | 0.826152 | 3.173018e-54 | -8.615850e-47 |
| Msa0207690 | Msa1111770 | 0.820136 | 8.045542e-53 | -8.615850e-47 |
| Msa0207690 | Msa1127910 | 0.808230 | 3.429992e-50 | -8.615850e-47 |
| Msa0207690 | Msa1162750 | 0.800671 | 1.291961e-48 | -8.615850e-47 |
| Msa0207690 | Msa1175380 | 0.830179 | 3.398133e-55 | -8.615850e-47 |
| Msa0207690 | Msa1218320 | 0.829156 | 6.026557e-55 | -8.615850e-47 |
| Msa0207690 | Msa1218360 | 0.827947 | 1.180666e-54 | -8.615850e-47 |
| Msa0207690 | Msa1221290 | 0.802590 | 5.219229e-49 | -8.615850e-47 |
| Msa0207690 | Msa1235470 | 0.835592 | 1.534289e-56 | -8.615850e-47 |
| Msa0207690 | Msa1236860 | -0.810695 | 1.014109e-50 | -8.615850e-47 |
| Msa0207690 | Msa1277350 | 0.823190 | 1.582858e-53 | -8.615850e-47 |
| Msa0207690 | Msa1314140 | 0.800731 | 1.256161e-48 | -8.615850e-47 |
| Msa0207690 | Msa1315760 | 0.838012 | 3.701382e-57 | -8.615850e-47 |
| Msa0207690 | Msa1337450 | 0.821057 | 4.941549e-53 | -8.615850e-47 |
| Msa0207690 | Msa1412500 | 0.823175 | 1.595768e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207690 | MtrunA17_Chr4g0063011 | 89.558 | 498 | 52 | 0 | 24 | 521 | 3 | 500 | 0.0 | 938 |
| Msa0207690 | MtrunA17_Chr1g0188051 | 75.692 | 506 | 123 | 0 | 16 | 521 | 7 | 512 | 0.0 | 822 |
| Msa0207690 | MtrunA17_Chr1g0166191 | 77.688 | 493 | 110 | 0 | 29 | 521 | 26 | 518 | 0.0 | 818 |
| Msa0207690 | MtrunA17_Chr2g0306781 | 98.933 | 375 | 4 | 0 | 147 | 521 | 31 | 405 | 0.0 | 776 |
| Msa0207690 | MtrunA17_Chr4g0035081 | 67.262 | 504 | 161 | 2 | 12 | 515 | 3 | 502 | 0.0 | 712 |
| Msa0207690 | MtrunA17_Chr7g0276251 | 65.737 | 502 | 157 | 6 | 27 | 516 | 31 | 529 | 0.0 | 667 |
| Msa0207690 | MtrunA17_Chr1g0209881 | 63.136 | 491 | 180 | 1 | 28 | 518 | 4 | 493 | 0.0 | 637 |
| Msa0207690 | MtrunA17_Chr5g0423521 | 60.081 | 491 | 195 | 1 | 28 | 518 | 4 | 493 | 0.0 | 616 |
| Msa0207690 | MtrunA17_Chr7g0250661 | 98.644 | 295 | 4 | 0 | 227 | 521 | 1 | 295 | 0.0 | 610 |
| Msa0207690 | MtrunA17_Chr6g0480561 | 60.699 | 458 | 174 | 2 | 66 | 517 | 13 | 470 | 0.0 | 576 |
| Msa0207690 | MtrunA17_Chr3g0136561 | 57.050 | 461 | 187 | 3 | 66 | 515 | 443 | 903 | 0.0 | 573 |
| Msa0207690 | MtrunA17_Chr2g0282281 | 53.734 | 482 | 209 | 5 | 29 | 507 | 33 | 503 | 3.13e-171 | 493 |
| Msa0207690 | MtrunA17_Chr2g0295781 | 49.890 | 455 | 210 | 7 | 73 | 515 | 3 | 451 | 3.65e-157 | 455 |
| Msa0207690 | MtrunA17_Chr2g0277841 | 52.683 | 410 | 191 | 3 | 108 | 516 | 45 | 452 | 9.02e-157 | 454 |
| Msa0207690 | MtrunA17_Chr7g0276241 | 65.052 | 289 | 94 | 2 | 227 | 513 | 1 | 284 | 2.86e-139 | 404 |
| Msa0207690 | MtrunA17_Chr1g0204301 | 47.059 | 408 | 215 | 1 | 107 | 513 | 77 | 484 | 4.60e-135 | 400 |
| Msa0207690 | MtrunA17_Chr3g0115021 | 46.472 | 411 | 218 | 2 | 104 | 513 | 74 | 483 | 3.51e-130 | 387 |
| Msa0207690 | MtrunA17_Chr3g0115041 | 46.472 | 411 | 218 | 2 | 104 | 513 | 74 | 483 | 3.83e-130 | 387 |
| Msa0207690 | MtrunA17_Chr7g0250651 | 98.387 | 186 | 3 | 0 | 11 | 196 | 1 | 186 | 8.81e-130 | 375 |
| Msa0207690 | MtrunA17_Chr6g0469631 | 46.535 | 404 | 214 | 2 | 111 | 513 | 80 | 482 | 1.07e-121 | 366 |
| Msa0207690 | MtrunA17_Chr6g0461631 | 63.922 | 255 | 92 | 0 | 262 | 516 | 3 | 257 | 1.15e-119 | 352 |
| Msa0207690 | MtrunA17_Chr4g0026871 | 68.142 | 226 | 71 | 1 | 291 | 515 | 2 | 227 | 1.32e-109 | 325 |
| Msa0207690 | MtrunA17_Chr1g0212951 | 39.954 | 433 | 227 | 7 | 108 | 514 | 28 | 453 | 9.51e-109 | 332 |
| Msa0207690 | MtrunA17_Chr4g0030601 | 39.817 | 437 | 245 | 6 | 86 | 512 | 5 | 433 | 1.10e-106 | 326 |
| Msa0207690 | MtrunA17_Chr4g0030591 | 38.170 | 448 | 250 | 5 | 82 | 512 | 5 | 442 | 6.22e-106 | 325 |
| Msa0207690 | MtrunA17_Chr2g0327721 | 39.813 | 427 | 226 | 6 | 108 | 512 | 27 | 444 | 3.35e-104 | 320 |
| Msa0207690 | MtrunA17_Chr4g0030581 | 38.288 | 444 | 254 | 4 | 82 | 512 | 5 | 441 | 3.44e-102 | 315 |
| Msa0207690 | MtrunA17_Chr4g0026791 | 62.360 | 178 | 66 | 1 | 291 | 467 | 2 | 179 | 1.73e-74 | 233 |
| Msa0207690 | MtrunA17_Chr4g0026721 | 67.296 | 159 | 52 | 0 | 357 | 515 | 1 | 159 | 1.29e-73 | 230 |
| Msa0207690 | MtrunA17_Chr6g0461621 | 49.145 | 234 | 111 | 4 | 43 | 274 | 2 | 229 | 7.67e-68 | 218 |
| Msa0207690 | MtrunA17_Chr4g0026861 | 49.519 | 208 | 99 | 2 | 63 | 265 | 9 | 215 | 3.48e-65 | 210 |
| Msa0207690 | MtrunA17_Chr4g0026801 | 47.967 | 123 | 64 | 0 | 86 | 208 | 36 | 158 | 5.15e-35 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207690 | AT2G26640.1 | 82.515 | 509 | 88 | 1 | 13 | 521 | 2 | 509 | 0.0 | 898 |
| Msa0207690 | AT1G04220.1 | 71.881 | 505 | 133 | 5 | 25 | 521 | 18 | 521 | 0.0 | 762 |
| Msa0207690 | AT5G43760.1 | 74.037 | 493 | 122 | 3 | 35 | 521 | 34 | 526 | 0.0 | 733 |
| Msa0207690 | AT1G19440.1 | 68.712 | 489 | 152 | 1 | 25 | 513 | 25 | 512 | 0.0 | 714 |
| Msa0207690 | AT2G16280.1 | 67.894 | 489 | 156 | 1 | 27 | 515 | 23 | 510 | 0.0 | 704 |
| Msa0207690 | AT1G01120.1 | 62.828 | 495 | 178 | 3 | 27 | 515 | 32 | 526 | 0.0 | 659 |
| Msa0207690 | AT1G68530.1 | 61.837 | 490 | 186 | 1 | 29 | 518 | 6 | 494 | 0.0 | 643 |
| Msa0207690 | AT4G34510.1 | 63.312 | 477 | 168 | 3 | 40 | 515 | 15 | 485 | 0.0 | 636 |
| Msa0207690 | AT1G25450.1 | 61.224 | 490 | 189 | 1 | 29 | 518 | 1 | 489 | 0.0 | 627 |
| Msa0207690 | AT2G26250.1 | 54.962 | 524 | 205 | 4 | 18 | 513 | 28 | 548 | 0.0 | 599 |
| Msa0207690 | AT4G34250.1 | 57.851 | 484 | 197 | 3 | 38 | 515 | 5 | 487 | 0.0 | 572 |
| Msa0207690 | AT4G34520.1 | 57.819 | 486 | 193 | 3 | 41 | 515 | 6 | 490 | 0.0 | 571 |
| Msa0207690 | AT2G15090.1 | 58.511 | 470 | 184 | 5 | 55 | 515 | 12 | 479 | 0.0 | 557 |
| Msa0207690 | AT2G46720.1 | 60.142 | 424 | 164 | 2 | 97 | 515 | 42 | 465 | 0.0 | 551 |
| Msa0207690 | AT3G10280.1 | 58.962 | 424 | 162 | 3 | 97 | 515 | 42 | 458 | 0.0 | 533 |
| Msa0207690 | AT1G71160.1 | 50.943 | 424 | 204 | 4 | 92 | 513 | 25 | 446 | 5.82e-158 | 458 |
| Msa0207690 | AT1G68530.2 | 57.849 | 344 | 145 | 0 | 29 | 372 | 6 | 349 | 1.44e-145 | 423 |
| Msa0207690 | AT5G49070.1 | 49.412 | 425 | 207 | 4 | 97 | 516 | 35 | 456 | 3.10e-144 | 423 |
| Msa0207690 | AT3G52160.1 | 44.969 | 487 | 197 | 5 | 30 | 504 | 22 | 449 | 2.69e-141 | 415 |
| Msa0207690 | AT3G52160.2 | 50.959 | 365 | 148 | 2 | 140 | 504 | 3 | 336 | 1.61e-130 | 383 |
| Msa0207690 | AT5G04530.1 | 39.623 | 424 | 245 | 5 | 97 | 512 | 17 | 437 | 2.14e-106 | 326 |
| Msa0207690 | AT2G28630.2 | 40.515 | 427 | 225 | 7 | 108 | 512 | 27 | 446 | 2.40e-106 | 326 |
| Msa0207690 | AT2G28630.1 | 40.515 | 427 | 225 | 7 | 108 | 512 | 27 | 446 | 2.40e-106 | 326 |
| Msa0207690 | AT1G07720.1 | 40.758 | 422 | 232 | 4 | 108 | 512 | 27 | 447 | 2.74e-105 | 323 |
| Msa0207690 | AT1G07720.2 | 40.758 | 422 | 232 | 4 | 108 | 512 | 70 | 490 | 4.07e-105 | 325 |
| Msa0207690 | AT5G49070.2 | 44.444 | 279 | 154 | 1 | 97 | 374 | 35 | 313 | 6.45e-80 | 253 |
| Msa0207690 | AT4G34850.2 | 25.483 | 259 | 149 | 10 | 246 | 492 | 91 | 317 | 3.72e-12 | 67.8 |
| Msa0207690 | AT4G34850.1 | 25.483 | 259 | 149 | 10 | 246 | 492 | 164 | 390 | 7.48e-12 | 67.8 |
Find 157 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGATATCTATGATATC+TGG | 0.226248 | 2_1:+40327324 | Msa0207690:CDS |
| ATGCACTAAGAGGATATTTA+TGG | 0.261715 | 2_1:+40327487 | Msa0207690:CDS |
| AGAATGACGCTTTATCGTTT+TGG | 0.265103 | 2_1:+40328424 | Msa0207690:CDS |
| TACTTTATCAAAAGATCTTA+TGG | 0.267099 | 2_1:+40328156 | Msa0207690:CDS |
| GGTGGGATGGGATGCAGTGC+TGG | 0.280642 | 2_1:+40327836 | Msa0207690:CDS |
| CGATGAGATCCACCAGTTTC+CGG | 0.286351 | 2_1:+40328621 | Msa0207690:CDS |
| TTCCTAGCTTCTTTCATTGA+AGG | 0.317480 | 2_1:-40327635 | None:intergenic |
| ATTTAGATGGCAGAAATTCT+TGG | 0.321018 | 2_1:-40328652 | None:intergenic |
| ATCAGAATTCCAATGTCTTT+AGG | 0.328553 | 2_1:-40327719 | None:intergenic |
| AGCTTGAAATCCGGAATATA+AGG | 0.330746 | 2_1:-40328304 | None:intergenic |
| GGTGTGGACCAATTGGTATT+TGG | 0.335798 | 2_1:-40328053 | None:intergenic |
| TGGCAAATAGCATTTGGTTC+TGG | 0.340846 | 2_1:+40328526 | Msa0207690:CDS |
| AAAACAAACATTACCACGTT+GGG | 0.342115 | 2_1:+40328199 | Msa0207690:CDS |
| GTGCATTTGCGAGACTCTTC+CGG | 0.354359 | 2_1:-40327470 | None:intergenic |
| CAAGTTCTGGTCTTGAGGTT+TGG | 0.356478 | 2_1:+40328801 | Msa0207690:three_prime_UTR |
| TCCTTTCTTGATCCTTCCCT+TGG | 0.368172 | 2_1:-40328494 | None:intergenic |
| CTGCAATTCTACTTTCCAAC+AGG | 0.368912 | 2_1:+40328011 | Msa0207690:CDS |
| AAAGATCTTATGGCCGTTGC+AGG | 0.375775 | 2_1:+40328166 | Msa0207690:CDS |
| TTCGAATTGTTTGTTCCGTA+TGG | 0.380907 | 2_1:+40327982 | Msa0207690:CDS |
| AGCTTCTTTCATTGAAGGAT+TGG | 0.386247 | 2_1:-40327630 | None:intergenic |
| ACACATTCTTTCTATTGAAA+TGG | 0.387431 | 2_1:+40328928 | Msa0207690:three_prime_UTR |
| ATTCTGATATAGTCAAGTTC+TGG | 0.388584 | 2_1:+40328788 | Msa0207690:three_prime_UTR |
| AGCTGTTGAACTGGTGGAAC+TGG | 0.396378 | 2_1:+40328723 | Msa0207690:three_prime_UTR |
| TTTAAACTACATCATTTAGA+TGG | 0.399579 | 2_1:-40328665 | None:intergenic |
| TTTGCTTTGAAAGTTAGATT+TGG | 0.400269 | 2_1:+40328762 | Msa0207690:three_prime_UTR |
| ACAACCAACGCATACGAGTT+AGG | 0.410167 | 2_1:-40327902 | None:intergenic |
| AAGCTTGGATCGATCGTTCC+CGG | 0.410332 | 2_1:-40327957 | None:intergenic |
| AGGACGAGTCATAAAGTAAA+AGG | 0.410912 | 2_1:-40327411 | None:intergenic |
| GCTTCTTTCATTGAAGGATT+GGG | 0.411634 | 2_1:-40327629 | None:intergenic |
| CTGTTCTTCGGTACGTTAGT+TGG | 0.413011 | 2_1:+40328253 | Msa0207690:CDS |
| TTGGAACATCGACCGGAAAC+TGG | 0.414672 | 2_1:-40328633 | None:intergenic |
| GAAGATAAAGCCTTATATTC+CGG | 0.417524 | 2_1:+40328294 | Msa0207690:CDS |
| GCGCAGTATGGAAGGCTCTA+AGG | 0.417809 | 2_1:+40328563 | Msa0207690:CDS |
| AGAACATGGCAAATAGCATT+TGG | 0.419756 | 2_1:+40328520 | Msa0207690:CDS |
| GAAGCGGAGGCAGTTATGTT+TGG | 0.419896 | 2_1:+40327659 | Msa0207690:CDS |
| TCAAGTGCAACAGCGCAGTA+TGG | 0.422431 | 2_1:+40328551 | Msa0207690:CDS |
| GGAATGCTTAGAACAGCTTC+TGG | 0.428265 | 2_1:-40327605 | None:intergenic |
| TGGAGAACATCACGTTGAAT+TGG | 0.436866 | 2_1:+40327930 | Msa0207690:CDS |
| ATCCTTGAGAGATCTGGTCT+TGG | 0.439851 | 2_1:+40327566 | Msa0207690:CDS |
| CGAAAGATCCTTGAGAGATC+TGG | 0.441571 | 2_1:+40327560 | Msa0207690:CDS |
| TGCGAACGGTGTGGACCAAT+TGG | 0.448066 | 2_1:-40328060 | None:intergenic |
| GAAGCTGTCTCCATGGCATA+TGG | 0.449190 | 2_1:+40328393 | Msa0207690:CDS |
| GGTACATGCCATGAGTGATT+AGG | 0.451469 | 2_1:-40327247 | None:intergenic |
| CAGTTCGCTTTGGTACGAAT+TGG | 0.453655 | 2_1:+40328459 | Msa0207690:CDS |
| GTGGGATGGGATGCAGTGCT+GGG | 0.466651 | 2_1:+40327837 | Msa0207690:CDS |
| ACACCTCGAGCAGTTCGCTT+TGG | 0.468976 | 2_1:+40328449 | Msa0207690:CDS |
| CCTCTTTCTTTCACCACTTG+TGG | 0.470663 | 2_1:+40327268 | Msa0207690:CDS |
| CGATAAAGCGTCATTCTTGA+CGG | 0.471823 | 2_1:-40328418 | None:intergenic |
| TCCGAACAGCTGCTGTTCTT+CGG | 0.473876 | 2_1:+40328241 | Msa0207690:CDS |
| CAATGATATCTATGATATCT+GGG | 0.474517 | 2_1:+40327325 | Msa0207690:CDS |
| CGACGACGATGGCGCTAACA+AGG | 0.474648 | 2_1:-40327162 | None:intergenic |
| GAGAAGATCCAAATACCAAT+TGG | 0.476259 | 2_1:+40328045 | Msa0207690:CDS |
| TCGAATTGTTTGTTCCGTAT+GGG | 0.486272 | 2_1:+40327983 | Msa0207690:CDS |
| ATCTCTCAAGGATCTTTCGT+TGG | 0.488205 | 2_1:-40327556 | None:intergenic |
| TTTACTTTATGACTCGTCCT+AGG | 0.488605 | 2_1:+40327414 | Msa0207690:CDS |
| ACCGAAGAACAGCAGCTGTT+CGG | 0.501657 | 2_1:-40328242 | None:intergenic |
| GAAGACGACAATGGCAAAGT+TGG | 0.504336 | 2_1:+40328130 | Msa0207690:CDS |
| ACGGGAAAATTTCAACTGAT+AGG | 0.508478 | 2_1:-40329003 | None:intergenic |
| AACATAATGAGTTACAATCT+TGG | 0.513615 | 2_1:+40327815 | Msa0207690:CDS |
| ATTGTTTGTTCCGTATGGGA+GGG | 0.513671 | 2_1:+40327987 | Msa0207690:CDS |
| TCAAAAGCTAGCTTGAAATC+CGG | 0.514010 | 2_1:-40328313 | None:intergenic |
| ATCTAAAACAGCTCTTCCAC+CGG | 0.515874 | 2_1:-40328353 | None:intergenic |
| GCCAAGGGAAGGATCAAGAA+AGG | 0.516116 | 2_1:+40328493 | Msa0207690:CDS |
| GAGTTACAATCTTGGTGGGA+TGG | 0.516163 | 2_1:+40327823 | Msa0207690:CDS |
| GAAATTCTTGGAACATCGAC+CGG | 0.516259 | 2_1:-40328640 | None:intergenic |
| ATCACGTTGAATTGGTATCC+CGG | 0.518078 | 2_1:+40327938 | Msa0207690:CDS |
| AGCTTGGATCGATCGTTCCC+GGG | 0.518481 | 2_1:-40327956 | None:intergenic |
| AAATCGACAATACATGTGAA+TGG | 0.518712 | 2_1:-40326525 | None:intergenic |
| AATGTAATCCATGATTTGCT+TGG | 0.519045 | 2_1:+40328884 | Msa0207690:three_prime_UTR |
| TTGTTTGTTCCGTATGGGAG+GGG | 0.520242 | 2_1:+40327988 | Msa0207690:CDS |
| CAAACAATTCGAAACAAGCT+TGG | 0.524897 | 2_1:-40327972 | None:intergenic |
| CTCCAAGACCAGATCTCTCA+AGG | 0.527098 | 2_1:-40327568 | None:intergenic |
| GTGCAACAGCGCAGTATGGA+AGG | 0.529765 | 2_1:+40328555 | Msa0207690:CDS |
| CCACACCGTTCGCACTAACA+AGG | 0.531499 | 2_1:+40328069 | Msa0207690:CDS |
| TCTCCTATCCGATCCCCTGT+TGG | 0.533862 | 2_1:-40328026 | None:intergenic |
| CTACAAAAGAGAAGAACCCT+TGG | 0.534529 | 2_1:+40328596 | Msa0207690:CDS |
| GAGGGCGAGTGGTTTCTTCA+CGG | 0.536357 | 2_1:+40327517 | Msa0207690:CDS |
| AGTCTCGCAAATGCACTAAG+AGG | 0.536367 | 2_1:+40327477 | Msa0207690:CDS |
| ATTGCAGAGAGTGACGGAGT+TGG | 0.537030 | 2_1:-40327764 | None:intergenic |
| TCTACTTTCCAACAGGGGAT+CGG | 0.537137 | 2_1:+40328018 | Msa0207690:CDS |
| AATTGTTTGTTCCGTATGGG+AGG | 0.537893 | 2_1:+40327986 | Msa0207690:CDS |
| TCTTGCTAAAGAGCTTCTCC+AGG | 0.541294 | 2_1:+40327874 | Msa0207690:CDS |
| TTAGGTGGTAGCTGTTGAAC+TGG | 0.541370 | 2_1:+40328714 | Msa0207690:three_prime_UTR |
| GTATGCGTTGGTTGTTAGCA+TGG | 0.541573 | 2_1:+40327910 | Msa0207690:CDS |
| GATATCATAGATATCATTGA+GGG | 0.541632 | 2_1:-40327321 | None:intergenic |
| ATAACGTACATCACTACCAC+AGG | 0.545447 | 2_1:-40328852 | None:intergenic |
| GCAGCTGTTCGGACGTTGGA+AGG | 0.548127 | 2_1:-40328231 | None:intergenic |
| TTTCAAGGCATCACCTGCAA+CGG | 0.548387 | 2_1:-40328179 | None:intergenic |
| CCACAAGTGGTGAAAGAAAG+AGG | 0.552043 | 2_1:-40327268 | None:intergenic |
| GAACATTTCTGCATTCATGC+CGG | 0.553989 | 2_1:+40328334 | Msa0207690:CDS |
| GAGAGTCGAGCAAATAATAA+CGG | 0.554120 | 2_1:-40327372 | None:intergenic |
| AGTTACAATCTTGGTGGGAT+GGG | 0.556990 | 2_1:+40327824 | Msa0207690:CDS |
| AGCACCCTTGTTAGTGCGAA+CGG | 0.557174 | 2_1:-40328074 | None:intergenic |
| TGGTGGATCTCATCGATCCA+AGG | 0.558878 | 2_1:-40328613 | None:intergenic |
| TTAACAAGGTAGACTGGCCT+AGG | 0.559143 | 2_1:-40327431 | None:intergenic |
| AATGGTTACCAAGCAAATCA+TGG | 0.560553 | 2_1:-40328892 | None:intergenic |
| TCATCCTAACTCGTATGCGT+TGG | 0.563252 | 2_1:+40327898 | Msa0207690:CDS |
| AACAGCAGCTGTTCGGACGT+TGG | 0.563575 | 2_1:-40328235 | None:intergenic |
| ATTGGCTTACACGGAAGCCA+AGG | 0.568482 | 2_1:+40328477 | Msa0207690:CDS |
| AAAACTTGAAGCTGTCTCCA+TGG | 0.569815 | 2_1:+40328386 | Msa0207690:CDS |
| TTTCCAACAGGGGATCGGAT+AGG | 0.573244 | 2_1:+40328023 | Msa0207690:CDS |
| ATAGTCAAGTTCTGGTCTTG+AGG | 0.573571 | 2_1:+40328796 | Msa0207690:three_prime_UTR |
| AAATTGAAGTATGTGAAGCT+TGG | 0.574482 | 2_1:+40327215 | Msa0207690:CDS |
| GAATTGCAGCCCCTCCCATA+CGG | 0.574490 | 2_1:-40327997 | None:intergenic |
| GAAAACAAACATTACCACGT+TGG | 0.574589 | 2_1:+40328198 | Msa0207690:CDS |
| ACGGTAAAGCCTAAAGACAT+TGG | 0.576657 | 2_1:+40327710 | Msa0207690:CDS |
| GAGAAATTAACAAGGTAGAC+TGG | 0.577191 | 2_1:-40327437 | None:intergenic |
| CATACGAGTTAGGATGAACC+TGG | 0.577273 | 2_1:-40327892 | None:intergenic |
| TTGGTACGAATTGGCTTACA+CGG | 0.578204 | 2_1:+40328468 | Msa0207690:CDS |
| TCACGTTGAATTGGTATCCC+GGG | 0.579569 | 2_1:+40327939 | Msa0207690:CDS |
| TAATTTCTCGTGTTACAAGC+CGG | 0.580512 | 2_1:+40327451 | Msa0207690:CDS |
| TGGTCTTGAGGTTTGGTGTG+CGG | 0.584202 | 2_1:+40328808 | Msa0207690:three_prime_UTR |
| TATCATTACCTAATCACTCA+TGG | 0.585224 | 2_1:+40327239 | Msa0207690:CDS |
| GGAAGGATCCGCGACGACGA+TGG | 0.585504 | 2_1:-40327173 | None:intergenic |
| TCTTTCATTGAAGGATTGGG+AGG | 0.589318 | 2_1:-40327626 | None:intergenic |
| CATTTCTGCATTCATGCCGG+TGG | 0.590314 | 2_1:+40328337 | Msa0207690:CDS |
| ATCCTTCAATGAAAGAAGCT+AGG | 0.592042 | 2_1:+40327633 | Msa0207690:CDS |
| ATGGATCACTCGAGGGCGAG+TGG | 0.595528 | 2_1:+40327506 | Msa0207690:CDS |
| ATGATCATTGCAGAGAGTGA+CGG | 0.597131 | 2_1:-40327770 | None:intergenic |
| TGGAACTGGATGAGTGTAAG+AGG | 0.597719 | 2_1:+40328737 | Msa0207690:three_prime_UTR |
| GAACATCGACCGGAAACTGG+TGG | 0.598498 | 2_1:-40328630 | None:intergenic |
| GTACCAAAGCGAACTGCTCG+AGG | 0.599020 | 2_1:-40328452 | None:intergenic |
| ATAATGAGTTACAATCTTGG+TGG | 0.599058 | 2_1:+40327818 | Msa0207690:CDS |
| TAATGAGTTACAATCTTGGT+GGG | 0.599305 | 2_1:+40327819 | Msa0207690:CDS |
| TTGCATGTATCAACATTAGG+TGG | 0.603117 | 2_1:+40328699 | Msa0207690:three_prime_UTR |
| TGTGTAATGCATAGCTGCAA+TGG | 0.611086 | 2_1:-40328910 | None:intergenic |
| GGTGGATCTCATCGATCCAA+GGG | 0.617008 | 2_1:-40328612 | None:intergenic |
| TCTACCTACTGTCAATCAAG+TGG | 0.619920 | 2_1:-40328978 | None:intergenic |
| AGATATCATAGATATCATTG+AGG | 0.623017 | 2_1:-40327322 | None:intergenic |
| GCTGCAATTAACACCACAAG+TGG | 0.623028 | 2_1:-40327281 | None:intergenic |
| TGCTTAGAACAGCTTCTGGT+AGG | 0.624810 | 2_1:-40327601 | None:intergenic |
| GGATATTTATGGATCACTCG+AGG | 0.626023 | 2_1:+40327498 | Msa0207690:CDS |
| TTTCCCACTTGATTGACAGT+AGG | 0.627605 | 2_1:+40328974 | Msa0207690:three_prime_UTR |
| CCTTGTTAGTGCGAACGGTG+TGG | 0.627883 | 2_1:-40328069 | None:intergenic |
| CGCAGAAATTTATTTCCCTG+TGG | 0.627893 | 2_1:+40328836 | Msa0207690:three_prime_UTR |
| CTACCTACTGTCAATCAAGT+GGG | 0.633156 | 2_1:-40328977 | None:intergenic |
| TCAAGAAAGGAGATAGAACA+TGG | 0.636177 | 2_1:+40328506 | Msa0207690:CDS |
| AAACAAACATTACCACGTTG+GGG | 0.638025 | 2_1:+40328200 | Msa0207690:CDS |
| AGAAGCTAGGAAAGAAGCGG+AGG | 0.638732 | 2_1:+40327646 | Msa0207690:CDS |
| CTTGACGGCTCCATATGCCA+TGG | 0.639071 | 2_1:-40328403 | None:intergenic |
| TCGGACGTTGGAAGGACAAG+TGG | 0.640146 | 2_1:-40328223 | None:intergenic |
| GACGACGATGGCGCTAACAA+GGG | 0.641367 | 2_1:-40327161 | None:intergenic |
| TGCAATTCTACTTTCCAACA+GGG | 0.643744 | 2_1:+40328012 | Msa0207690:CDS |
| GATATTTATGGATCACTCGA+GGG | 0.648472 | 2_1:+40327499 | Msa0207690:CDS |
| TTGGCTTACACGGAAGCCAA+GGG | 0.648617 | 2_1:+40328478 | Msa0207690:CDS |
| CTTACACGGAAGCCAAGGGA+AGG | 0.652154 | 2_1:+40328482 | Msa0207690:CDS |
| GAAAGAAGCTAGGAAAGAAG+CGG | 0.654182 | 2_1:+40327643 | Msa0207690:CDS |
| GGTGGTAGCTGTTGAACTGG+TGG | 0.662600 | 2_1:+40328717 | Msa0207690:three_prime_UTR |
| ATCAATCACTATAAGCTGAG+AGG | 0.664913 | 2_1:+40327791 | Msa0207690:CDS |
| GCAATTCTACTTTCCAACAG+GGG | 0.671034 | 2_1:+40328013 | Msa0207690:CDS |
| TGTTAGCGCCATCGTCGTCG+CGG | 0.673997 | 2_1:+40327165 | Msa0207690:CDS |
| CACACCGTTCGCACTAACAA+GGG | 0.677053 | 2_1:+40328070 | Msa0207690:CDS |
| ACACAAGAAGAAGACGACAA+TGG | 0.692603 | 2_1:+40328121 | Msa0207690:CDS |
| GGCGAGTGGTTTCTTCACGG+AGG | 0.715615 | 2_1:+40327520 | Msa0207690:CDS |
| TGTAACACGAGAAATTAACA+AGG | 0.752828 | 2_1:-40327445 | None:intergenic |
| TAACGTACATCACTACCACA+GGG | 0.758672 | 2_1:-40328851 | None:intergenic |
| AAGGACAAGTGGCCCCAACG+TGG | 0.761089 | 2_1:-40328212 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTGATTTTAAATTAAAAT+TGG | - | chr2_1:40326596-40326615 | None:intergenic | 10.0% |
| !!! | CATTTTAAAATAAAAAACAT+TGG | - | chr2_1:40326738-40326757 | None:intergenic | 10.0% |
| !!! | CAATGTTTTTTATTTTAAAA+TGG | + | chr2_1:40326736-40326755 | Msa0207690:intron | 10.0% |
| !! | AAAAAAAACAAATTAAACTT+TGG | + | chr2_1:40326952-40326971 | Msa0207690:intron | 10.0% |
| !! | ATGTATACAAGAAATAAAAA+AGG | + | chr2_1:40326878-40326897 | Msa0207690:intron | 15.0% |
| !! | TACTTTATCAAAAGATCTTA+TGG | + | chr2_1:40328156-40328175 | Msa0207690:CDS | 20.0% |
| !! | TTTAAACTACATCATTTAGA+TGG | - | chr2_1:40328668-40328687 | None:intergenic | 20.0% |
| !!! | GGAAATCACTTTTTTATTAA+TGG | - | chr2_1:40328959-40328978 | None:intergenic | 20.0% |
| ! | ATTTGAATAAGAGAGAGTTA+GGG | - | chr2_1:40326714-40326733 | None:intergenic | 25.0% |
| ! | AATTTGAATAAGAGAGAGTT+AGG | - | chr2_1:40326715-40326734 | None:intergenic | 25.0% |
| ! | TTTCATATGAAATTCCTATC+TGG | + | chr2_1:40326849-40326868 | Msa0207690:intron | 25.0% |
| ! | TTCATATGAAATTCCTATCT+GGG | + | chr2_1:40326850-40326869 | Msa0207690:intron | 25.0% |
| ! | AAAGGACAAATTAAATAGAC+AGG | + | chr2_1:40326896-40326915 | Msa0207690:intron | 25.0% |
| ! | AAGGACAAATTAAATAGACA+GGG | + | chr2_1:40326897-40326916 | Msa0207690:intron | 25.0% |
| !!! | TTCACTGATTTTTTGAAATC+TGG | - | chr2_1:40327197-40327216 | None:intergenic | 25.0% |
| ! | GATATCATAGATATCATTGA+GGG | - | chr2_1:40327324-40327343 | None:intergenic | 25.0% |
| ! | AGATATCATAGATATCATTG+AGG | - | chr2_1:40327325-40327344 | None:intergenic | 25.0% |
| ! | TCAATGATATCTATGATATC+TGG | + | chr2_1:40327324-40327343 | Msa0207690:CDS | 25.0% |
| ! | CAATGATATCTATGATATCT+GGG | + | chr2_1:40327325-40327344 | Msa0207690:CDS | 25.0% |
| ! | AACATAATGAGTTACAATCT+TGG | + | chr2_1:40327815-40327834 | Msa0207690:CDS | 25.0% |
| !! | TTTTTGCATGTATCAACATT+AGG | + | chr2_1:40328696-40328715 | Msa0207690:three_prime_UTR | 25.0% |
| !!! | TTTGCTTTGAAAGTTAGATT+TGG | + | chr2_1:40328762-40328781 | Msa0207690:three_prime_UTR | 25.0% |
| ! | ACACATTCTTTCTATTGAAA+TGG | + | chr2_1:40328928-40328947 | Msa0207690:three_prime_UTR | 25.0% |
| AAATCGACAATACATGTGAA+TGG | - | chr2_1:40326528-40326547 | None:intergenic | 30.0% | |
| GGAATAAGAGAGAAATGAAA+GGG | - | chr2_1:40326575-40326594 | None:intergenic | 30.0% | |
| TGGAATAAGAGAGAAATGAA+AGG | - | chr2_1:40326576-40326595 | None:intergenic | 30.0% | |
| GGGTTTAATAATCGCATAAA+AGG | + | chr2_1:40326917-40326936 | Msa0207690:intron | 30.0% | |
| !! | TTAAACTTTGGCTTTGTTTC+AGG | + | chr2_1:40326964-40326983 | Msa0207690:intron | 30.0% |
| ATATATAGCACAGAGAACTA+TGG | - | chr2_1:40327050-40327069 | None:intergenic | 30.0% | |
| ATGTATTCAAAACCTTGAAC+AGG | + | chr2_1:40327109-40327128 | Msa0207690:intron | 30.0% | |
| TGTATTCAAAACCTTGAACA+GGG | + | chr2_1:40327110-40327129 | Msa0207690:intron | 30.0% | |
| !!! | CTGATTTTTTGAAATCTGGA+AGG | - | chr2_1:40327193-40327212 | None:intergenic | 30.0% |
| AAATTGAAGTATGTGAAGCT+TGG | + | chr2_1:40327215-40327234 | Msa0207690:CDS | 30.0% | |
| TATCATTACCTAATCACTCA+TGG | + | chr2_1:40327239-40327258 | Msa0207690:CDS | 30.0% | |
| AAAAGGTCGATAAAAACACA+AGG | - | chr2_1:40327397-40327416 | None:intergenic | 30.0% | |
| TGTAACACGAGAAATTAACA+AGG | - | chr2_1:40327448-40327467 | None:intergenic | 30.0% | |
| ATGCACTAAGAGGATATTTA+TGG | + | chr2_1:40327487-40327506 | Msa0207690:CDS | 30.0% | |
| ATCAGAATTCCAATGTCTTT+AGG | - | chr2_1:40327722-40327741 | None:intergenic | 30.0% | |
| ATAATGAGTTACAATCTTGG+TGG | + | chr2_1:40327818-40327837 | Msa0207690:CDS | 30.0% | |
| TAATGAGTTACAATCTTGGT+GGG | + | chr2_1:40327819-40327838 | Msa0207690:CDS | 30.0% | |
| AAAACAAACATTACCACGTT+GGG | + | chr2_1:40328199-40328218 | Msa0207690:CDS | 30.0% | |
| ! | GAAGATAAAGCCTTATATTC+CGG | + | chr2_1:40328294-40328313 | Msa0207690:CDS | 30.0% |
| ATTTAGATGGCAGAAATTCT+TGG | - | chr2_1:40328655-40328674 | None:intergenic | 30.0% | |
| ATTCTGATATAGTCAAGTTC+TGG | + | chr2_1:40328788-40328807 | Msa0207690:three_prime_UTR | 30.0% | |
| !! | AATGTAATCCATGATTTGCT+TGG | + | chr2_1:40328884-40328903 | Msa0207690:three_prime_UTR | 30.0% |
| GTATACATCAAAACCCAGAT+AGG | - | chr2_1:40326866-40326885 | None:intergenic | 35.0% | |
| GAGAGTCGAGCAAATAATAA+CGG | - | chr2_1:40327375-40327394 | None:intergenic | 35.0% | |
| AGGACGAGTCATAAAGTAAA+AGG | - | chr2_1:40327414-40327433 | None:intergenic | 35.0% | |
| TTTACTTTATGACTCGTCCT+AGG | + | chr2_1:40327414-40327433 | Msa0207690:CDS | 35.0% | |
| GAGAAATTAACAAGGTAGAC+TGG | - | chr2_1:40327440-40327459 | None:intergenic | 35.0% | |
| TAATTTCTCGTGTTACAAGC+CGG | + | chr2_1:40327451-40327470 | Msa0207690:CDS | 35.0% | |
| GATATTTATGGATCACTCGA+GGG | + | chr2_1:40327499-40327518 | Msa0207690:CDS | 35.0% | |
| GCTTCTTTCATTGAAGGATT+GGG | - | chr2_1:40327632-40327651 | None:intergenic | 35.0% | |
| AGCTTCTTTCATTGAAGGAT+TGG | - | chr2_1:40327633-40327652 | None:intergenic | 35.0% | |
| ATCCTTCAATGAAAGAAGCT+AGG | + | chr2_1:40327633-40327652 | Msa0207690:CDS | 35.0% | |
| TTCCTAGCTTCTTTCATTGA+AGG | - | chr2_1:40327638-40327657 | None:intergenic | 35.0% | |
| ATCAATCACTATAAGCTGAG+AGG | + | chr2_1:40327791-40327810 | Msa0207690:CDS | 35.0% | |
| CAAACAATTCGAAACAAGCT+TGG | - | chr2_1:40327975-40327994 | None:intergenic | 35.0% | |
| TTCGAATTGTTTGTTCCGTA+TGG | + | chr2_1:40327982-40328001 | Msa0207690:CDS | 35.0% | |
| TCGAATTGTTTGTTCCGTAT+GGG | + | chr2_1:40327983-40328002 | Msa0207690:CDS | 35.0% | |
| TGCAATTCTACTTTCCAACA+GGG | + | chr2_1:40328012-40328031 | Msa0207690:CDS | 35.0% | |
| GAGAAGATCCAAATACCAAT+TGG | + | chr2_1:40328045-40328064 | Msa0207690:CDS | 35.0% | |
| !! | CGTGGTAATGTTTGTTTTCA+AGG | - | chr2_1:40328197-40328216 | None:intergenic | 35.0% |
| GAAAACAAACATTACCACGT+TGG | + | chr2_1:40328198-40328217 | Msa0207690:CDS | 35.0% | |
| AAACAAACATTACCACGTTG+GGG | + | chr2_1:40328200-40328219 | Msa0207690:CDS | 35.0% | |
| AGCTTGAAATCCGGAATATA+AGG | - | chr2_1:40328307-40328326 | None:intergenic | 35.0% | |
| ! | TCAAAAGCTAGCTTGAAATC+CGG | - | chr2_1:40328316-40328335 | None:intergenic | 35.0% |
| ! | AGAATGACGCTTTATCGTTT+TGG | + | chr2_1:40328424-40328443 | Msa0207690:CDS | 35.0% |
| TCAAGAAAGGAGATAGAACA+TGG | + | chr2_1:40328506-40328525 | Msa0207690:CDS | 35.0% | |
| AGAACATGGCAAATAGCATT+TGG | + | chr2_1:40328520-40328539 | Msa0207690:CDS | 35.0% | |
| TTGCATGTATCAACATTAGG+TGG | + | chr2_1:40328699-40328718 | Msa0207690:three_prime_UTR | 35.0% | |
| AATGGTTACCAAGCAAATCA+TGG | - | chr2_1:40328895-40328914 | None:intergenic | 35.0% | |
| CAGAGAAGACACAGAAATGT+GGG | - | chr2_1:40326645-40326664 | None:intergenic | 40.0% | |
| !!! | CTGTCATTTTTCCCTGTTCA+AGG | - | chr2_1:40327124-40327143 | None:intergenic | 40.0% |
| GGATATTTATGGATCACTCG+AGG | + | chr2_1:40327498-40327517 | Msa0207690:CDS | 40.0% | |
| ATCTCTCAAGGATCTTTCGT+TGG | - | chr2_1:40327559-40327578 | None:intergenic | 40.0% | |
| TCTTTCATTGAAGGATTGGG+AGG | - | chr2_1:40327629-40327648 | None:intergenic | 40.0% | |
| GAAAGAAGCTAGGAAAGAAG+CGG | + | chr2_1:40327643-40327662 | Msa0207690:CDS | 40.0% | |
| !! | TGAGCTGTTTTCGAAGACAA+CGG | + | chr2_1:40327691-40327710 | Msa0207690:CDS | 40.0% |
| ACGGTAAAGCCTAAAGACAT+TGG | + | chr2_1:40327710-40327729 | Msa0207690:CDS | 40.0% | |
| ATGATCATTGCAGAGAGTGA+CGG | - | chr2_1:40327773-40327792 | None:intergenic | 40.0% | |
| AGTTACAATCTTGGTGGGAT+GGG | + | chr2_1:40327824-40327843 | Msa0207690:CDS | 40.0% | |
| TGGAGAACATCACGTTGAAT+TGG | + | chr2_1:40327930-40327949 | Msa0207690:CDS | 40.0% | |
| ATCACGTTGAATTGGTATCC+CGG | + | chr2_1:40327938-40327957 | Msa0207690:CDS | 40.0% | |
| AATTGTTTGTTCCGTATGGG+AGG | + | chr2_1:40327986-40328005 | Msa0207690:CDS | 40.0% | |
| ATTGTTTGTTCCGTATGGGA+GGG | + | chr2_1:40327987-40328006 | Msa0207690:CDS | 40.0% | |
| CTGCAATTCTACTTTCCAAC+AGG | + | chr2_1:40328011-40328030 | Msa0207690:CDS | 40.0% | |
| GCAATTCTACTTTCCAACAG+GGG | + | chr2_1:40328013-40328032 | Msa0207690:CDS | 40.0% | |
| ACACAAGAAGAAGACGACAA+TGG | + | chr2_1:40328121-40328140 | Msa0207690:CDS | 40.0% | |
| GAACATTTCTGCATTCATGC+CGG | + | chr2_1:40328334-40328353 | Msa0207690:CDS | 40.0% | |
| ! | ATCTAAAACAGCTCTTCCAC+CGG | - | chr2_1:40328356-40328375 | None:intergenic | 40.0% |
| AAAACTTGAAGCTGTCTCCA+TGG | + | chr2_1:40328386-40328405 | Msa0207690:CDS | 40.0% | |
| ! | CGATAAAGCGTCATTCTTGA+CGG | - | chr2_1:40328421-40328440 | None:intergenic | 40.0% |
| ! | TTGGTACGAATTGGCTTACA+CGG | + | chr2_1:40328468-40328487 | Msa0207690:CDS | 40.0% |
| ! | TGGCAAATAGCATTTGGTTC+TGG | + | chr2_1:40328526-40328545 | Msa0207690:CDS | 40.0% |
| ! | CAAGGGTTCTTCTCTTTTGT+AGG | - | chr2_1:40328598-40328617 | None:intergenic | 40.0% |
| CTACAAAAGAGAAGAACCCT+TGG | + | chr2_1:40328596-40328615 | Msa0207690:CDS | 40.0% | |
| GAAATTCTTGGAACATCGAC+CGG | - | chr2_1:40328643-40328662 | None:intergenic | 40.0% | |
| !! | ATAGTCAAGTTCTGGTCTTG+AGG | + | chr2_1:40328796-40328815 | Msa0207690:three_prime_UTR | 40.0% |
| CGCAGAAATTTATTTCCCTG+TGG | + | chr2_1:40328836-40328855 | Msa0207690:three_prime_UTR | 40.0% | |
| TAACGTACATCACTACCACA+GGG | - | chr2_1:40328854-40328873 | None:intergenic | 40.0% | |
| ATAACGTACATCACTACCAC+AGG | - | chr2_1:40328855-40328874 | None:intergenic | 40.0% | |
| TGTGTAATGCATAGCTGCAA+TGG | - | chr2_1:40328913-40328932 | None:intergenic | 40.0% | |
| TTTCCCACTTGATTGACAGT+AGG | + | chr2_1:40328974-40328993 | Msa0207690:three_prime_UTR | 40.0% | |
| CTACCTACTGTCAATCAAGT+GGG | - | chr2_1:40328980-40328999 | None:intergenic | 40.0% | |
| TCTACCTACTGTCAATCAAG+TGG | - | chr2_1:40328981-40329000 | None:intergenic | 40.0% | |
| AGAAGACACAGAAATGTGGG+TGG | - | chr2_1:40326642-40326661 | None:intergenic | 45.0% | |
| GCAGAGAAGACACAGAAATG+TGG | - | chr2_1:40326646-40326665 | None:intergenic | 45.0% | |
| AAAGCCAAAGCCAAAGCCAA+AGG | - | chr2_1:40326671-40326690 | None:intergenic | 45.0% | |
| !!! | GCTTTGGCTTTGGCTTTTCA+AGG | + | chr2_1:40326674-40326693 | Msa0207690:intron | 45.0% |
| GGTACATGCCATGAGTGATT+AGG | - | chr2_1:40327250-40327269 | None:intergenic | 45.0% | |
| CCACAAGTGGTGAAAGAAAG+AGG | - | chr2_1:40327271-40327290 | None:intergenic | 45.0% | |
| CCTCTTTCTTTCACCACTTG+TGG | + | chr2_1:40327268-40327287 | Msa0207690:CDS | 45.0% | |
| GCTGCAATTAACACCACAAG+TGG | - | chr2_1:40327284-40327303 | None:intergenic | 45.0% | |
| !! | TTAACAAGGTAGACTGGCCT+AGG | - | chr2_1:40327434-40327453 | None:intergenic | 45.0% |
| AGTCTCGCAAATGCACTAAG+AGG | + | chr2_1:40327477-40327496 | Msa0207690:CDS | 45.0% | |
| CGAAAGATCCTTGAGAGATC+TGG | + | chr2_1:40327560-40327579 | Msa0207690:CDS | 45.0% | |
| ATCCTTGAGAGATCTGGTCT+TGG | + | chr2_1:40327566-40327585 | Msa0207690:CDS | 45.0% | |
| TGCTTAGAACAGCTTCTGGT+AGG | - | chr2_1:40327604-40327623 | None:intergenic | 45.0% | |
| GGAATGCTTAGAACAGCTTC+TGG | - | chr2_1:40327608-40327627 | None:intergenic | 45.0% | |
| GAGTTACAATCTTGGTGGGA+TGG | + | chr2_1:40327823-40327842 | Msa0207690:CDS | 45.0% | |
| TCTTGCTAAAGAGCTTCTCC+AGG | + | chr2_1:40327874-40327893 | Msa0207690:CDS | 45.0% | |
| CATACGAGTTAGGATGAACC+TGG | - | chr2_1:40327895-40327914 | None:intergenic | 45.0% | |
| TCATCCTAACTCGTATGCGT+TGG | + | chr2_1:40327898-40327917 | Msa0207690:CDS | 45.0% | |
| ACAACCAACGCATACGAGTT+AGG | - | chr2_1:40327905-40327924 | None:intergenic | 45.0% | |
| !! | GTATGCGTTGGTTGTTAGCA+TGG | + | chr2_1:40327910-40327929 | Msa0207690:CDS | 45.0% |
| TCACGTTGAATTGGTATCCC+GGG | + | chr2_1:40327939-40327958 | Msa0207690:CDS | 45.0% | |
| TTGTTTGTTCCGTATGGGAG+GGG | + | chr2_1:40327988-40328007 | Msa0207690:CDS | 45.0% | |
| TCTACTTTCCAACAGGGGAT+CGG | + | chr2_1:40328018-40328037 | Msa0207690:CDS | 45.0% | |
| GGTGTGGACCAATTGGTATT+TGG | - | chr2_1:40328056-40328075 | None:intergenic | 45.0% | |
| GAAGACGACAATGGCAAAGT+TGG | + | chr2_1:40328130-40328149 | Msa0207690:CDS | 45.0% | |
| AAAGATCTTATGGCCGTTGC+AGG | + | chr2_1:40328166-40328185 | Msa0207690:CDS | 45.0% | |
| ! | TTTCAAGGCATCACCTGCAA+CGG | - | chr2_1:40328182-40328201 | None:intergenic | 45.0% |
| CTGTTCTTCGGTACGTTAGT+TGG | + | chr2_1:40328253-40328272 | Msa0207690:CDS | 45.0% | |
| CAGTTCGCTTTGGTACGAAT+TGG | + | chr2_1:40328459-40328478 | Msa0207690:CDS | 45.0% | |
| TCCTTTCTTGATCCTTCCCT+TGG | - | chr2_1:40328497-40328516 | None:intergenic | 45.0% | |
| TTAGGTGGTAGCTGTTGAAC+TGG | + | chr2_1:40328714-40328733 | Msa0207690:three_prime_UTR | 45.0% | |
| TGGAACTGGATGAGTGTAAG+AGG | + | chr2_1:40328737-40328756 | Msa0207690:three_prime_UTR | 45.0% | |
| !! | CAAGTTCTGGTCTTGAGGTT+TGG | + | chr2_1:40328801-40328820 | Msa0207690:three_prime_UTR | 45.0% |
| TGTGTCTTCTCTGCTGCCTT+TGG | + | chr2_1:40326652-40326671 | Msa0207690:intron | 50.0% | |
| ! | TTCTCTGCTGCCTTTGGCTT+TGG | + | chr2_1:40326658-40326677 | Msa0207690:intron | 50.0% |
| GTGCATTTGCGAGACTCTTC+CGG | - | chr2_1:40327473-40327492 | None:intergenic | 50.0% | |
| CTCCAAGACCAGATCTCTCA+AGG | - | chr2_1:40327571-40327590 | None:intergenic | 50.0% | |
| AGAAGCTAGGAAAGAAGCGG+AGG | + | chr2_1:40327646-40327665 | Msa0207690:CDS | 50.0% | |
| GAAGCGGAGGCAGTTATGTT+TGG | + | chr2_1:40327659-40327678 | Msa0207690:CDS | 50.0% | |
| ! | ATTGCAGAGAGTGACGGAGT+TGG | - | chr2_1:40327767-40327786 | None:intergenic | 50.0% |
| AAGCTTGGATCGATCGTTCC+CGG | - | chr2_1:40327960-40327979 | None:intergenic | 50.0% | |
| TTTCCAACAGGGGATCGGAT+AGG | + | chr2_1:40328023-40328042 | Msa0207690:CDS | 50.0% | |
| CACACCGTTCGCACTAACAA+GGG | + | chr2_1:40328070-40328089 | Msa0207690:CDS | 50.0% | |
| AGCACCCTTGTTAGTGCGAA+CGG | - | chr2_1:40328077-40328096 | None:intergenic | 50.0% | |
| TCCGAACAGCTGCTGTTCTT+CGG | + | chr2_1:40328241-40328260 | Msa0207690:CDS | 50.0% | |
| ACCGAAGAACAGCAGCTGTT+CGG | - | chr2_1:40328245-40328264 | None:intergenic | 50.0% | |
| CATTTCTGCATTCATGCCGG+TGG | + | chr2_1:40328337-40328356 | Msa0207690:CDS | 50.0% | |
| GAAGCTGTCTCCATGGCATA+TGG | + | chr2_1:40328393-40328412 | Msa0207690:CDS | 50.0% | |
| ! | ATTGGCTTACACGGAAGCCA+AGG | + | chr2_1:40328477-40328496 | Msa0207690:CDS | 50.0% |
| TTGGCTTACACGGAAGCCAA+GGG | + | chr2_1:40328478-40328497 | Msa0207690:CDS | 50.0% | |
| GCCAAGGGAAGGATCAAGAA+AGG | + | chr2_1:40328493-40328512 | Msa0207690:CDS | 50.0% | |
| TCAAGTGCAACAGCGCAGTA+TGG | + | chr2_1:40328551-40328570 | Msa0207690:CDS | 50.0% | |
| GGTGGATCTCATCGATCCAA+GGG | - | chr2_1:40328615-40328634 | None:intergenic | 50.0% | |
| ! | TGGTGGATCTCATCGATCCA+AGG | - | chr2_1:40328616-40328635 | None:intergenic | 50.0% |
| CGATGAGATCCACCAGTTTC+CGG | + | chr2_1:40328621-40328640 | Msa0207690:CDS | 50.0% | |
| TTGGAACATCGACCGGAAAC+TGG | - | chr2_1:40328636-40328655 | None:intergenic | 50.0% | |
| AGCTGTTGAACTGGTGGAAC+TGG | + | chr2_1:40328723-40328742 | Msa0207690:three_prime_UTR | 50.0% | |
| !! | TGGTCTTGAGGTTTGGTGTG+CGG | + | chr2_1:40328808-40328827 | Msa0207690:three_prime_UTR | 50.0% |
| !! | GCTGCCTTTGGCTTTGGCTT+TGG | + | chr2_1:40326664-40326683 | Msa0207690:intron | 55.0% |
| GACGACGATGGCGCTAACAA+GGG | - | chr2_1:40327164-40327183 | None:intergenic | 55.0% | |
| GAGGGCGAGTGGTTTCTTCA+CGG | + | chr2_1:40327517-40327536 | Msa0207690:CDS | 55.0% | |
| AGCTTGGATCGATCGTTCCC+GGG | - | chr2_1:40327959-40327978 | None:intergenic | 55.0% | |
| GAATTGCAGCCCCTCCCATA+CGG | - | chr2_1:40328000-40328019 | None:intergenic | 55.0% | |
| TCTCCTATCCGATCCCCTGT+TGG | - | chr2_1:40328029-40328048 | None:intergenic | 55.0% | |
| TGCGAACGGTGTGGACCAAT+TGG | - | chr2_1:40328063-40328082 | None:intergenic | 55.0% | |
| CCTTGTTAGTGCGAACGGTG+TGG | - | chr2_1:40328072-40328091 | None:intergenic | 55.0% | |
| CCACACCGTTCGCACTAACA+AGG | + | chr2_1:40328069-40328088 | Msa0207690:CDS | 55.0% | |
| TCGGACGTTGGAAGGACAAG+TGG | - | chr2_1:40328226-40328245 | None:intergenic | 55.0% | |
| AACAGCAGCTGTTCGGACGT+TGG | - | chr2_1:40328238-40328257 | None:intergenic | 55.0% | |
| CTTGACGGCTCCATATGCCA+TGG | - | chr2_1:40328406-40328425 | None:intergenic | 55.0% | |
| ACACCTCGAGCAGTTCGCTT+TGG | + | chr2_1:40328449-40328468 | Msa0207690:CDS | 55.0% | |
| GTACCAAAGCGAACTGCTCG+AGG | - | chr2_1:40328455-40328474 | None:intergenic | 55.0% | |
| CTTACACGGAAGCCAAGGGA+AGG | + | chr2_1:40328482-40328501 | Msa0207690:CDS | 55.0% | |
| GTGCAACAGCGCAGTATGGA+AGG | + | chr2_1:40328555-40328574 | Msa0207690:CDS | 55.0% | |
| GCGCAGTATGGAAGGCTCTA+AGG | + | chr2_1:40328563-40328582 | Msa0207690:CDS | 55.0% | |
| GAACATCGACCGGAAACTGG+TGG | - | chr2_1:40328633-40328652 | None:intergenic | 55.0% | |
| GGTGGTAGCTGTTGAACTGG+TGG | + | chr2_1:40328717-40328736 | Msa0207690:three_prime_UTR | 55.0% | |
| CGACGACGATGGCGCTAACA+AGG | - | chr2_1:40327165-40327184 | None:intergenic | 60.0% | |
| TGTTAGCGCCATCGTCGTCG+CGG | + | chr2_1:40327165-40327184 | Msa0207690:CDS | 60.0% | |
| ATGGATCACTCGAGGGCGAG+TGG | + | chr2_1:40327506-40327525 | Msa0207690:CDS | 60.0% | |
| GGCGAGTGGTTTCTTCACGG+AGG | + | chr2_1:40327520-40327539 | Msa0207690:CDS | 60.0% | |
| GTGGGATGGGATGCAGTGCT+GGG | + | chr2_1:40327837-40327856 | Msa0207690:CDS | 60.0% | |
| AAGGACAAGTGGCCCCAACG+TGG | - | chr2_1:40328215-40328234 | None:intergenic | 60.0% | |
| GCAGCTGTTCGGACGTTGGA+AGG | - | chr2_1:40328234-40328253 | None:intergenic | 60.0% | |
| GGAAGGATCCGCGACGACGA+TGG | - | chr2_1:40327176-40327195 | None:intergenic | 65.0% | |
| GGTGGGATGGGATGCAGTGC+TGG | + | chr2_1:40327836-40327855 | Msa0207690:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 40326511 | 40329022 | 40326511 | ID=Msa0207690;Name=Msa0207690 |
| chr2_1 | mRNA | 40326511 | 40329022 | 40326511 | ID=Msa0207690-mRNA-1;Parent=Msa0207690;Name=Msa0207690-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0|0|0.5|1|0|0|2|350|521 |
| chr2_1 | exon | 40326511 | 40326534 | 40326511 | ID=Msa0207690-mRNA-1:exon:12482;Parent=Msa0207690-mRNA-1 |
| chr2_1 | exon | 40327131 | 40329022 | 40327131 | ID=Msa0207690-mRNA-1:exon:12483;Parent=Msa0207690-mRNA-1 |
| chr2_1 | CDS | 40326511 | 40326534 | 40326511 | ID=Msa0207690-mRNA-1:cds;Parent=Msa0207690-mRNA-1 |
| chr2_1 | CDS | 40327131 | 40328672 | 40327131 | ID=Msa0207690-mRNA-1:cds;Parent=Msa0207690-mRNA-1 |
| chr2_1 | three_prime_UTR | 40328673 | 40329022 | 40328673 | ID=Msa0207690-mRNA-1:three_prime_utr;Parent=Msa0207690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
