Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523190 | XP_003603750.2 | 97.235 | 217 | 3 | 1 | 1 | 217 | 1 | 214 | 5.11e-149 | 423 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523190 | sp|F4I0N3|Y1572_ARATH | 43.519 | 216 | 83 | 8 | 8 | 210 | 1 | 190 | 3.29e-35 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523190 | G7J4R0 | 97.235 | 217 | 3 | 1 | 1 | 217 | 1 | 214 | 2.44e-149 | 423 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071860 | Msa0523190 | 0.806355 | 8.564515e-50 | -8.615850e-47 |
| Msa0125210 | Msa0523190 | 0.817412 | 3.341669e-52 | -8.615850e-47 |
| Msa0164400 | Msa0523190 | 0.807383 | 5.191120e-50 | -8.615850e-47 |
| Msa0194820 | Msa0523190 | 0.818460 | 1.937440e-52 | -8.615850e-47 |
| Msa0194840 | Msa0523190 | 0.810098 | 1.364616e-50 | -8.615850e-47 |
| Msa0385220 | Msa0523190 | 0.979984 | 3.495891e-149 | -8.615850e-47 |
| Msa0418970 | Msa0523190 | 0.800139 | 1.658102e-48 | -8.615850e-47 |
| Msa0435550 | Msa0523190 | 0.978224 | 2.224173e-145 | -8.615850e-47 |
| Msa0479450 | Msa0523190 | 0.854333 | 1.320387e-61 | -8.615850e-47 |
| Msa0523190 | Msa0616510 | 0.812409 | 4.301053e-51 | -8.615850e-47 |
| Msa0523190 | Msa0699840 | 0.823609 | 1.262948e-53 | -8.615850e-47 |
| Msa0523190 | Msa1184330 | 0.800952 | 1.132074e-48 | -8.615850e-47 |
| Msa0523190 | Msa1341890 | 0.815930 | 7.180974e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523190 | MtrunA17_Chr3g0142591 | 97.235 | 217 | 3 | 1 | 1 | 217 | 1 | 214 | 4.70e-153 | 423 |
| Msa0523190 | MtrunA17_Chr5g0405371 | 45.946 | 222 | 102 | 10 | 1 | 216 | 1 | 210 | 3.11e-46 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0523190 | AT1G75720.2 | 43.519 | 216 | 83 | 8 | 8 | 210 | 1 | 190 | 3.34e-36 | 126 |
| Msa0523190 | AT1G75720.1 | 43.981 | 216 | 84 | 9 | 8 | 210 | 1 | 192 | 9.30e-36 | 125 |
| Msa0523190 | AT3G51220.1 | 34.951 | 206 | 103 | 6 | 15 | 212 | 4 | 186 | 4.12e-27 | 102 |
| Msa0523190 | AT2G17940.1 | 33.673 | 196 | 119 | 4 | 16 | 205 | 13 | 203 | 2.06e-23 | 93.6 |
| Msa0523190 | AT1G75720.3 | 43.791 | 153 | 57 | 6 | 71 | 210 | 12 | 148 | 2.13e-20 | 84.3 |
Find 57 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGTCTATCTCTGTATTTC+TGG | 0.104808 | 3_4:-76521431 | None:intergenic |
| CATAATGGAGCAAATGAAAA+TGG | 0.193439 | 3_4:+76522421 | Msa0523190:CDS |
| GAGAGAAGAATGAGATAATT+AGG | 0.261473 | 3_4:-76521355 | None:intergenic |
| TAAAGAAGAAAGCATGTTAA+TGG | 0.275611 | 3_4:+76522516 | Msa0523190:CDS |
| TCATTCATCATGGAACTTCT+TGG | 0.313646 | 3_4:-76522900 | None:intergenic |
| ACCCGGTTAGGTAATTATTC+TGG | 0.316380 | 3_4:-76522974 | None:intergenic |
| TGGAAAGGCACCCTTCTCTT+AGG | 0.324014 | 3_4:+76522812 | Msa0523190:CDS |
| AAAGAGGCTGTTACATTATT+CGG | 0.326753 | 3_4:+76521475 | Msa0523190:CDS |
| TAGACACAAGGGCGCCATTC+AGG | 0.343210 | 3_4:+76521446 | Msa0523190:CDS |
| GAGACAATTGGCATAATATA+TGG | 0.345266 | 3_4:-76521293 | None:intergenic |
| TACCAGAATAATTACCTAAC+CGG | 0.350792 | 3_4:+76522972 | Msa0523190:three_prime_UTR |
| TTAGTAATGAACAATATTAA+AGG | 0.352027 | 3_4:-76521315 | None:intergenic |
| TCGTGCGTTCGAGTTCTTCC+TGG | 0.369083 | 3_4:-76522558 | None:intergenic |
| AAGTCATTAATTCCACTTAT+CGG | 0.388786 | 3_4:+76522847 | Msa0523190:CDS |
| ATAATGGAGCAAATGAAAAT+GGG | 0.406872 | 3_4:+76522422 | Msa0523190:CDS |
| TTCTTCTTCTTCCTAAGAGA+AGG | 0.423924 | 3_4:-76522823 | None:intergenic |
| AGCATATCCACCCACCGCTT+TGG | 0.425781 | 3_4:+76521195 | Msa0523190:five_prime_UTR |
| CTTGAATACAAAACCCGGTT+AGG | 0.438590 | 3_4:-76522986 | None:intergenic |
| GAAGAATGAGATAATTAGGT+TGG | 0.441692 | 3_4:-76521351 | None:intergenic |
| TGATGGAGTTTCAAAAGAAA+AGG | 0.446231 | 3_4:+76522716 | Msa0523190:CDS |
| TCATCAAGGTGTTGAGAAGT+TGG | 0.449442 | 3_4:+76522792 | Msa0523190:CDS |
| GGTGGATATGCTATTTGTCT+TGG | 0.454026 | 3_4:-76521184 | None:intergenic |
| AGGTAACATGACATGAGAAA+TGG | 0.454194 | 3_4:-76522764 | None:intergenic |
| ATAATATATGGTATGAAGAT+TGG | 0.459765 | 3_4:-76521281 | None:intergenic |
| ATTTGATGAAGAATTAATGA+TGG | 0.459950 | 3_4:+76522699 | Msa0523190:CDS |
| TCTAATCTATAGATTCATAA+TGG | 0.462589 | 3_4:+76522406 | Msa0523190:intron |
| TCTTCTTCTTCCTAAGAGAA+GGG | 0.487269 | 3_4:-76522822 | None:intergenic |
| ACAATATTAAAGGAGACAAT+TGG | 0.488865 | 3_4:-76521305 | None:intergenic |
| ATGGGGTTGATCAGTCTTCA+AGG | 0.494065 | 3_4:+76522440 | Msa0523190:CDS |
| TAATGTAACAGCCTCTTTGA+CGG | 0.499377 | 3_4:-76521470 | None:intergenic |
| TGAAAACGTTACAGCTGAGC+TGG | 0.505652 | 3_4:+76522465 | Msa0523190:CDS |
| ACATTGTATGTCATCTCTCC+AGG | 0.522311 | 3_4:+76522540 | Msa0523190:CDS |
| TACAAACTCATCATTCATCA+TGG | 0.529625 | 3_4:-76522910 | None:intergenic |
| ACAGAATTGTTCTAGTGAAG+TGG | 0.530563 | 3_4:+76521239 | Msa0523190:five_prime_UTR |
| AAAGATGAATAAGAAGAAAG+AGG | 0.535423 | 3_4:+76521393 | Msa0523190:exon |
| GCCTCTTTGACGGACCTGAA+TGG | 0.535948 | 3_4:-76521460 | None:intergenic |
| AAGATGAATAAGAAGAAAGA+GGG | 0.553271 | 3_4:+76521394 | Msa0523190:exon |
| ACCAGAATAATTACCTAACC+GGG | 0.556561 | 3_4:+76522973 | Msa0523190:three_prime_UTR |
| GCCATTCAGGTCCGTCAAAG+AGG | 0.580083 | 3_4:+76521459 | Msa0523190:CDS |
| ATGTTACCTCAAGGTCATCA+AGG | 0.584789 | 3_4:+76522778 | Msa0523190:CDS |
| TCTCATGTCATGTTACCTCA+AGG | 0.592396 | 3_4:+76522769 | Msa0523190:CDS |
| TGGGGTTGATCAGTCTTCAA+GGG | 0.595004 | 3_4:+76522441 | Msa0523190:CDS |
| CAGAAATAGAGCCAAAGCGG+TGG | 0.595909 | 3_4:-76521206 | None:intergenic |
| AATAGAGCCAAAGCGGTGGG+TGG | 0.603252 | 3_4:-76521202 | None:intergenic |
| TCAACACCTTGATGACCTTG+AGG | 0.616815 | 3_4:-76522784 | None:intergenic |
| AGAAATAGAGCCAAAGCGGT+GGG | 0.632622 | 3_4:-76521205 | None:intergenic |
| AAGGTGTTGAGAAGTTGGAA+AGG | 0.636189 | 3_4:+76522797 | Msa0523190:CDS |
| TAATGGAGCAAATGAAAATG+GGG | 0.636381 | 3_4:+76522423 | Msa0523190:CDS |
| TCATTAATTCCACTTATCGG+AGG | 0.648652 | 3_4:+76522850 | Msa0523190:CDS |
| TGCAACTAAACTCAAACACC+AGG | 0.653524 | 3_4:+76521531 | Msa0523190:CDS |
| AGAAACTTGAATACAAAACC+CGG | 0.657488 | 3_4:-76522991 | None:intergenic |
| AAACGTTACAGCTGAGCTGG+AGG | 0.666569 | 3_4:+76522468 | Msa0523190:CDS |
| ATGACATGAGAAATGGACGG+TGG | 0.709324 | 3_4:-76522757 | None:intergenic |
| TCTCAGAAATAGAGCCAAAG+CGG | 0.715352 | 3_4:-76521209 | None:intergenic |
| GAAATACAGAGATAGACACA+AGG | 0.731685 | 3_4:+76521434 | Msa0523190:CDS |
| AAATACAGAGATAGACACAA+GGG | 0.731958 | 3_4:+76521435 | Msa0523190:CDS |
| AACATGACATGAGAAATGGA+CGG | 0.745302 | 3_4:-76522760 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTATTAATAATGTG+TGG | - | chr3_4:76522367-76522386 | None:intergenic | 10.0% |
| !! | AATAAATTATTAATAATGTG+TGG | - | chr3_4:76522367-76522386 | None:intergenic | 10.0% |
| !! | TTAGTAATGAACAATATTAA+AGG | - | chr3_4:76521318-76521337 | None:intergenic | 15.0% |
| !!! | ATTTTATTAGAGTATCAAAA+TGG | + | chr3_4:76521578-76521597 | Msa0523190:intron | 15.0% |
| !! | TTTAAATCATCAATTAAACT+TGG | + | chr3_4:76521622-76521641 | Msa0523190:intron | 15.0% |
| !! | ATTATAATATGTTTGTAAGT+GGG | + | chr3_4:76521711-76521730 | Msa0523190:intron | 15.0% |
| !! | TATAAAATATAACCATCTAA+TGG | - | chr3_4:76521797-76521816 | None:intergenic | 15.0% |
| !! | TTAGTAATGAACAATATTAA+AGG | - | chr3_4:76521318-76521337 | None:intergenic | 15.0% |
| !!! | ATTTTATTAGAGTATCAAAA+TGG | + | chr3_4:76521578-76521597 | Msa0523190:intron | 15.0% |
| !! | TTTAAATCATCAATTAAACT+TGG | + | chr3_4:76521622-76521641 | Msa0523190:intron | 15.0% |
| !! | ATTATAATATGTTTGTAAGT+GGG | + | chr3_4:76521711-76521730 | Msa0523190:intron | 15.0% |
| !! | TATAAAATATAACCATCTAA+TGG | - | chr3_4:76521797-76521816 | None:intergenic | 15.0% |
| !! | ATAATATATGGTATGAAGAT+TGG | - | chr3_4:76521284-76521303 | None:intergenic | 20.0% |
| !! | AATAAAATTGAATGATGTGA+TGG | - | chr3_4:76521566-76521585 | None:intergenic | 20.0% |
| !! | CATTATAATATGTTTGTAAG+TGG | + | chr3_4:76521710-76521729 | Msa0523190:intron | 20.0% |
| !! | TTATAATATGTTTGTAAGTG+GGG | + | chr3_4:76521712-76521731 | Msa0523190:intron | 20.0% |
| !! | TACTCAAATTCTTAATCATT+TGG | + | chr3_4:76522142-76522161 | Msa0523190:intron | 20.0% |
| !! | AAATTTAATTATTGATCCGT+AGG | + | chr3_4:76522169-76522188 | Msa0523190:intron | 20.0% |
| !!! | TTTTACTTTTTACATACCTA+CGG | - | chr3_4:76522188-76522207 | None:intergenic | 20.0% |
| !!! | TAAGATGCACAAAATAATTT+TGG | - | chr3_4:76522266-76522285 | None:intergenic | 20.0% |
| !! | TTAGAGAATAGAGATTAATA+AGG | + | chr3_4:76522283-76522302 | Msa0523190:intron | 20.0% |
| !! | TCTAATCTATAGATTCATAA+TGG | + | chr3_4:76522406-76522425 | Msa0523190:intron | 20.0% |
| !! | ATTTGATGAAGAATTAATGA+TGG | + | chr3_4:76522699-76522718 | Msa0523190:CDS | 20.0% |
| !! | ATAATATATGGTATGAAGAT+TGG | - | chr3_4:76521284-76521303 | None:intergenic | 20.0% |
| !! | AATAAAATTGAATGATGTGA+TGG | - | chr3_4:76521566-76521585 | None:intergenic | 20.0% |
| !! | CATTATAATATGTTTGTAAG+TGG | + | chr3_4:76521710-76521729 | Msa0523190:intron | 20.0% |
| !! | TTATAATATGTTTGTAAGTG+GGG | + | chr3_4:76521712-76521731 | Msa0523190:intron | 20.0% |
| !! | TACTCAAATTCTTAATCATT+TGG | + | chr3_4:76522142-76522161 | Msa0523190:intron | 20.0% |
| !! | AAATTTAATTATTGATCCGT+AGG | + | chr3_4:76522169-76522188 | Msa0523190:intron | 20.0% |
| !!! | TTTTACTTTTTACATACCTA+CGG | - | chr3_4:76522188-76522207 | None:intergenic | 20.0% |
| !!! | TAAGATGCACAAAATAATTT+TGG | - | chr3_4:76522266-76522285 | None:intergenic | 20.0% |
| !! | TTAGAGAATAGAGATTAATA+AGG | + | chr3_4:76522283-76522302 | Msa0523190:intron | 20.0% |
| !! | TCTAATCTATAGATTCATAA+TGG | + | chr3_4:76522406-76522425 | Msa0523190:intron | 20.0% |
| !! | ATTTGATGAAGAATTAATGA+TGG | + | chr3_4:76522699-76522718 | Msa0523190:CDS | 20.0% |
| ! | ACAATATTAAAGGAGACAAT+TGG | - | chr3_4:76521308-76521327 | None:intergenic | 25.0% |
| ! | AAAGATGAATAAGAAGAAAG+AGG | + | chr3_4:76521393-76521412 | Msa0523190:exon | 25.0% |
| ! | AAGATGAATAAGAAGAAAGA+GGG | + | chr3_4:76521394-76521413 | Msa0523190:exon | 25.0% |
| !! | ATTAGAGTATCAAAATGGTT+AGG | + | chr3_4:76521583-76521602 | Msa0523190:intron | 25.0% |
| ! | GTAACTCAATCTTACAAAAT+CGG | - | chr3_4:76521756-76521775 | None:intergenic | 25.0% |
| ! | TCCAAATATTATCCATTAGA+TGG | + | chr3_4:76521782-76521801 | Msa0523190:intron | 25.0% |
| !! | ACCATCTAATGGATAATATT+TGG | - | chr3_4:76521786-76521805 | None:intergenic | 25.0% |
| ! | TTAAAAAAATAATGGCCAAG+AGG | + | chr3_4:76521823-76521842 | Msa0523190:intron | 25.0% |
| ! | ACTTCCTTTATTCAATTAGA+CGG | - | chr3_4:76522002-76522021 | None:intergenic | 25.0% |
| !! | TTCAATGTAGTCTTACAATA+TGG | + | chr3_4:76522099-76522118 | Msa0523190:intron | 25.0% |
| ! | TTACTGTGTAAGATTAGTAT+CGG | + | chr3_4:76522216-76522235 | Msa0523190:intron | 25.0% |
| !! | ATAATGGAGCAAATGAAAAT+GGG | + | chr3_4:76522422-76522441 | Msa0523190:CDS | 25.0% |
| !! | TAAAGAAGAAAGCATGTTAA+TGG | + | chr3_4:76522516-76522535 | Msa0523190:CDS | 25.0% |
| ! | AAGTCATTAATTCCACTTAT+CGG | + | chr3_4:76522847-76522866 | Msa0523190:CDS | 25.0% |
| !!! | AGGTATTTTTTCTAGGAAAA+AGG | + | chr3_4:76522870-76522889 | Msa0523190:CDS | 25.0% |
| !!! | GGTATTTTTTCTAGGAAAAA+GGG | + | chr3_4:76522871-76522890 | Msa0523190:CDS | 25.0% |
| ! | ACAATATTAAAGGAGACAAT+TGG | - | chr3_4:76521308-76521327 | None:intergenic | 25.0% |
| ! | AAAGATGAATAAGAAGAAAG+AGG | + | chr3_4:76521393-76521412 | Msa0523190:exon | 25.0% |
| ! | AAGATGAATAAGAAGAAAGA+GGG | + | chr3_4:76521394-76521413 | Msa0523190:exon | 25.0% |
| !! | ATTAGAGTATCAAAATGGTT+AGG | + | chr3_4:76521583-76521602 | Msa0523190:intron | 25.0% |
| ! | GTAACTCAATCTTACAAAAT+CGG | - | chr3_4:76521756-76521775 | None:intergenic | 25.0% |
| ! | TCCAAATATTATCCATTAGA+TGG | + | chr3_4:76521782-76521801 | Msa0523190:intron | 25.0% |
| !! | ACCATCTAATGGATAATATT+TGG | - | chr3_4:76521786-76521805 | None:intergenic | 25.0% |
| ! | TTAAAAAAATAATGGCCAAG+AGG | + | chr3_4:76521823-76521842 | Msa0523190:intron | 25.0% |
| ! | ACTTCCTTTATTCAATTAGA+CGG | - | chr3_4:76522002-76522021 | None:intergenic | 25.0% |
| !! | TTCAATGTAGTCTTACAATA+TGG | + | chr3_4:76522099-76522118 | Msa0523190:intron | 25.0% |
| ! | TTACTGTGTAAGATTAGTAT+CGG | + | chr3_4:76522216-76522235 | Msa0523190:intron | 25.0% |
| !! | ATAATGGAGCAAATGAAAAT+GGG | + | chr3_4:76522422-76522441 | Msa0523190:CDS | 25.0% |
| !! | TAAAGAAGAAAGCATGTTAA+TGG | + | chr3_4:76522516-76522535 | Msa0523190:CDS | 25.0% |
| ! | AAGTCATTAATTCCACTTAT+CGG | + | chr3_4:76522847-76522866 | Msa0523190:CDS | 25.0% |
| !!! | AGGTATTTTTTCTAGGAAAA+AGG | + | chr3_4:76522870-76522889 | Msa0523190:CDS | 25.0% |
| !!! | GGTATTTTTTCTAGGAAAAA+GGG | + | chr3_4:76522871-76522890 | Msa0523190:CDS | 25.0% |
| GAGACAATTGGCATAATATA+TGG | - | chr3_4:76521296-76521315 | None:intergenic | 30.0% | |
| GAAGAATGAGATAATTAGGT+TGG | - | chr3_4:76521354-76521373 | None:intergenic | 30.0% | |
| GAGAGAAGAATGAGATAATT+AGG | - | chr3_4:76521358-76521377 | None:intergenic | 30.0% | |
| AAATACAGAGATAGACACAA+GGG | + | chr3_4:76521435-76521454 | Msa0523190:CDS | 30.0% | |
| AAAGAGGCTGTTACATTATT+CGG | + | chr3_4:76521475-76521494 | Msa0523190:CDS | 30.0% | |
| !! | TCTTACAAAATCGGTTTGTA+AGG | - | chr3_4:76521747-76521766 | None:intergenic | 30.0% |
| GTTTCAAAGTAACATAGGAT+AGG | - | chr3_4:76521894-76521913 | None:intergenic | 30.0% | |
| !! | ATCCTATGTTACTTTGAAAC+AGG | + | chr3_4:76521894-76521913 | Msa0523190:intron | 30.0% |
| !! | TCCTATGTTACTTTGAAACA+GGG | + | chr3_4:76521895-76521914 | Msa0523190:intron | 30.0% |
| TTCACCGTCTAATTGAATAA+AGG | + | chr3_4:76521995-76522014 | Msa0523190:intron | 30.0% | |
| ! | CATAATGGAGCAAATGAAAA+TGG | + | chr3_4:76522421-76522440 | Msa0523190:CDS | 30.0% |
| TAATGGAGCAAATGAAAATG+GGG | + | chr3_4:76522423-76522442 | Msa0523190:CDS | 30.0% | |
| CGAAACTGAAAAAAATCAAG+TGG | + | chr3_4:76522609-76522628 | Msa0523190:CDS | 30.0% | |
| ! | TCTTGAACTTTTCACTTCAA+AGG | - | chr3_4:76522680-76522699 | None:intergenic | 30.0% |
| TGATGGAGTTTCAAAAGAAA+AGG | + | chr3_4:76522716-76522735 | Msa0523190:CDS | 30.0% | |
| !!! | TTATCGGAGGTATTTTTTCT+AGG | + | chr3_4:76522863-76522882 | Msa0523190:CDS | 30.0% |
| TACAAACTCATCATTCATCA+TGG | - | chr3_4:76522913-76522932 | None:intergenic | 30.0% | |
| TACCAGAATAATTACCTAAC+CGG | + | chr3_4:76522972-76522991 | Msa0523190:three_prime_UTR | 30.0% | |
| AGAAACTTGAATACAAAACC+CGG | - | chr3_4:76522994-76523013 | None:intergenic | 30.0% | |
| GAGACAATTGGCATAATATA+TGG | - | chr3_4:76521296-76521315 | None:intergenic | 30.0% | |
| GAAGAATGAGATAATTAGGT+TGG | - | chr3_4:76521354-76521373 | None:intergenic | 30.0% | |
| GAGAGAAGAATGAGATAATT+AGG | - | chr3_4:76521358-76521377 | None:intergenic | 30.0% | |
| AAATACAGAGATAGACACAA+GGG | + | chr3_4:76521435-76521454 | Msa0523190:CDS | 30.0% | |
| AAAGAGGCTGTTACATTATT+CGG | + | chr3_4:76521475-76521494 | Msa0523190:CDS | 30.0% | |
| !! | TCTTACAAAATCGGTTTGTA+AGG | - | chr3_4:76521747-76521766 | None:intergenic | 30.0% |
| GTTTCAAAGTAACATAGGAT+AGG | - | chr3_4:76521894-76521913 | None:intergenic | 30.0% | |
| !! | ATCCTATGTTACTTTGAAAC+AGG | + | chr3_4:76521894-76521913 | Msa0523190:intron | 30.0% |
| !! | TCCTATGTTACTTTGAAACA+GGG | + | chr3_4:76521895-76521914 | Msa0523190:intron | 30.0% |
| TTCACCGTCTAATTGAATAA+AGG | + | chr3_4:76521995-76522014 | Msa0523190:intron | 30.0% | |
| ! | CATAATGGAGCAAATGAAAA+TGG | + | chr3_4:76522421-76522440 | Msa0523190:CDS | 30.0% |
| TAATGGAGCAAATGAAAATG+GGG | + | chr3_4:76522423-76522442 | Msa0523190:CDS | 30.0% | |
| CGAAACTGAAAAAAATCAAG+TGG | + | chr3_4:76522609-76522628 | Msa0523190:CDS | 30.0% | |
| ! | TCTTGAACTTTTCACTTCAA+AGG | - | chr3_4:76522680-76522699 | None:intergenic | 30.0% |
| TGATGGAGTTTCAAAAGAAA+AGG | + | chr3_4:76522716-76522735 | Msa0523190:CDS | 30.0% | |
| !!! | TTATCGGAGGTATTTTTTCT+AGG | + | chr3_4:76522863-76522882 | Msa0523190:CDS | 30.0% |
| TACAAACTCATCATTCATCA+TGG | - | chr3_4:76522913-76522932 | None:intergenic | 30.0% | |
| TACCAGAATAATTACCTAAC+CGG | + | chr3_4:76522972-76522991 | Msa0523190:three_prime_UTR | 30.0% | |
| AGAAACTTGAATACAAAACC+CGG | - | chr3_4:76522994-76523013 | None:intergenic | 30.0% | |
| ACAGAATTGTTCTAGTGAAG+TGG | + | chr3_4:76521239-76521258 | Msa0523190:five_prime_UTR | 35.0% | |
| TGTGTCTATCTCTGTATTTC+TGG | - | chr3_4:76521434-76521453 | None:intergenic | 35.0% | |
| GAAATACAGAGATAGACACA+AGG | + | chr3_4:76521434-76521453 | Msa0523190:CDS | 35.0% | |
| TAATGTAACAGCCTCTTTGA+CGG | - | chr3_4:76521473-76521492 | None:intergenic | 35.0% | |
| !! | TTCGGTGATAAAGTTTTAGC+TGG | + | chr3_4:76521493-76521512 | Msa0523190:CDS | 35.0% |
| AAATGTCCAAGAATTCCTCT+TGG | - | chr3_4:76521841-76521860 | None:intergenic | 35.0% | |
| AGGAGAATCTTATTGATGGA+TGG | - | chr3_4:76521874-76521893 | None:intergenic | 35.0% | |
| GGATAGGAGAATCTTATTGA+TGG | - | chr3_4:76521878-76521897 | None:intergenic | 35.0% | |
| ACCCTGTTTCAAAGTAACAT+AGG | - | chr3_4:76521899-76521918 | None:intergenic | 35.0% | |
| TCCTCATCATCACTTGTTTA+TGG | + | chr3_4:76522325-76522344 | Msa0523190:intron | 35.0% | |
| ! | ACCATAAACAAGTGATGATG+AGG | - | chr3_4:76522329-76522348 | None:intergenic | 35.0% |
| AACATGACATGAGAAATGGA+CGG | - | chr3_4:76522763-76522782 | None:intergenic | 35.0% | |
| AGGTAACATGACATGAGAAA+TGG | - | chr3_4:76522767-76522786 | None:intergenic | 35.0% | |
| TCTTCTTCTTCCTAAGAGAA+GGG | - | chr3_4:76522825-76522844 | None:intergenic | 35.0% | |
| TTCTTCTTCTTCCTAAGAGA+AGG | - | chr3_4:76522826-76522845 | None:intergenic | 35.0% | |
| TCATTAATTCCACTTATCGG+AGG | + | chr3_4:76522850-76522869 | Msa0523190:CDS | 35.0% | |
| GAAAAAATACCTCCGATAAG+TGG | - | chr3_4:76522862-76522881 | None:intergenic | 35.0% | |
| TCATTCATCATGGAACTTCT+TGG | - | chr3_4:76522903-76522922 | None:intergenic | 35.0% | |
| ACCAGAATAATTACCTAACC+GGG | + | chr3_4:76522973-76522992 | Msa0523190:three_prime_UTR | 35.0% | |
| ACAGAATTGTTCTAGTGAAG+TGG | + | chr3_4:76521239-76521258 | Msa0523190:five_prime_UTR | 35.0% | |
| TGTGTCTATCTCTGTATTTC+TGG | - | chr3_4:76521434-76521453 | None:intergenic | 35.0% | |
| GAAATACAGAGATAGACACA+AGG | + | chr3_4:76521434-76521453 | Msa0523190:CDS | 35.0% | |
| TAATGTAACAGCCTCTTTGA+CGG | - | chr3_4:76521473-76521492 | None:intergenic | 35.0% | |
| !! | TTCGGTGATAAAGTTTTAGC+TGG | + | chr3_4:76521493-76521512 | Msa0523190:CDS | 35.0% |
| AAATGTCCAAGAATTCCTCT+TGG | - | chr3_4:76521841-76521860 | None:intergenic | 35.0% | |
| AGGAGAATCTTATTGATGGA+TGG | - | chr3_4:76521874-76521893 | None:intergenic | 35.0% | |
| GGATAGGAGAATCTTATTGA+TGG | - | chr3_4:76521878-76521897 | None:intergenic | 35.0% | |
| ACCCTGTTTCAAAGTAACAT+AGG | - | chr3_4:76521899-76521918 | None:intergenic | 35.0% | |
| TCCTCATCATCACTTGTTTA+TGG | + | chr3_4:76522325-76522344 | Msa0523190:intron | 35.0% | |
| ! | ACCATAAACAAGTGATGATG+AGG | - | chr3_4:76522329-76522348 | None:intergenic | 35.0% |
| AACATGACATGAGAAATGGA+CGG | - | chr3_4:76522763-76522782 | None:intergenic | 35.0% | |
| AGGTAACATGACATGAGAAA+TGG | - | chr3_4:76522767-76522786 | None:intergenic | 35.0% | |
| TCTTCTTCTTCCTAAGAGAA+GGG | - | chr3_4:76522825-76522844 | None:intergenic | 35.0% | |
| TTCTTCTTCTTCCTAAGAGA+AGG | - | chr3_4:76522826-76522845 | None:intergenic | 35.0% | |
| TCATTAATTCCACTTATCGG+AGG | + | chr3_4:76522850-76522869 | Msa0523190:CDS | 35.0% | |
| GAAAAAATACCTCCGATAAG+TGG | - | chr3_4:76522862-76522881 | None:intergenic | 35.0% | |
| TCATTCATCATGGAACTTCT+TGG | - | chr3_4:76522903-76522922 | None:intergenic | 35.0% | |
| ACCAGAATAATTACCTAACC+GGG | + | chr3_4:76522973-76522992 | Msa0523190:three_prime_UTR | 35.0% | |
| ! | GGTGGATATGCTATTTGTCT+TGG | - | chr3_4:76521187-76521206 | None:intergenic | 40.0% |
| TCTCAGAAATAGAGCCAAAG+CGG | - | chr3_4:76521212-76521231 | None:intergenic | 40.0% | |
| TGCAACTAAACTCAAACACC+AGG | + | chr3_4:76521531-76521550 | Msa0523190:CDS | 40.0% | |
| ! | ATGTGATGGTGTATAGAACC+TGG | - | chr3_4:76521552-76521571 | None:intergenic | 40.0% |
| TGTCGTATATCACAGAACGT+AGG | - | chr3_4:76521692-76521711 | None:intergenic | 40.0% | |
| TAATGGCCAAGAGGAATTCT+TGG | + | chr3_4:76521832-76521851 | Msa0523190:intron | 40.0% | |
| ACATTGTATGTCATCTCTCC+AGG | + | chr3_4:76522540-76522559 | Msa0523190:CDS | 40.0% | |
| TCTCATGTCATGTTACCTCA+AGG | + | chr3_4:76522769-76522788 | Msa0523190:CDS | 40.0% | |
| ATGTTACCTCAAGGTCATCA+AGG | + | chr3_4:76522778-76522797 | Msa0523190:CDS | 40.0% | |
| !! | TCATCAAGGTGTTGAGAAGT+TGG | + | chr3_4:76522792-76522811 | Msa0523190:CDS | 40.0% |
| !! | AAGGTGTTGAGAAGTTGGAA+AGG | + | chr3_4:76522797-76522816 | Msa0523190:CDS | 40.0% |
| ACCCGGTTAGGTAATTATTC+TGG | - | chr3_4:76522977-76522996 | None:intergenic | 40.0% | |
| CTTGAATACAAAACCCGGTT+AGG | - | chr3_4:76522989-76523008 | None:intergenic | 40.0% | |
| ! | GGTGGATATGCTATTTGTCT+TGG | - | chr3_4:76521187-76521206 | None:intergenic | 40.0% |
| TCTCAGAAATAGAGCCAAAG+CGG | - | chr3_4:76521212-76521231 | None:intergenic | 40.0% | |
| TGCAACTAAACTCAAACACC+AGG | + | chr3_4:76521531-76521550 | Msa0523190:CDS | 40.0% | |
| ! | ATGTGATGGTGTATAGAACC+TGG | - | chr3_4:76521552-76521571 | None:intergenic | 40.0% |
| TGTCGTATATCACAGAACGT+AGG | - | chr3_4:76521692-76521711 | None:intergenic | 40.0% | |
| TAATGGCCAAGAGGAATTCT+TGG | + | chr3_4:76521832-76521851 | Msa0523190:intron | 40.0% | |
| ACATTGTATGTCATCTCTCC+AGG | + | chr3_4:76522540-76522559 | Msa0523190:CDS | 40.0% | |
| TCTCATGTCATGTTACCTCA+AGG | + | chr3_4:76522769-76522788 | Msa0523190:CDS | 40.0% | |
| ATGTTACCTCAAGGTCATCA+AGG | + | chr3_4:76522778-76522797 | Msa0523190:CDS | 40.0% | |
| !! | TCATCAAGGTGTTGAGAAGT+TGG | + | chr3_4:76522792-76522811 | Msa0523190:CDS | 40.0% |
| !! | AAGGTGTTGAGAAGTTGGAA+AGG | + | chr3_4:76522797-76522816 | Msa0523190:CDS | 40.0% |
| ACCCGGTTAGGTAATTATTC+TGG | - | chr3_4:76522977-76522996 | None:intergenic | 40.0% | |
| CTTGAATACAAAACCCGGTT+AGG | - | chr3_4:76522989-76523008 | None:intergenic | 40.0% | |
| AGAAATAGAGCCAAAGCGGT+GGG | - | chr3_4:76521208-76521227 | None:intergenic | 45.0% | |
| !! | CAAAATCGGTTTGTAAGGCG+AGG | - | chr3_4:76521742-76521761 | None:intergenic | 45.0% |
| ! | ATGGGGTTGATCAGTCTTCA+AGG | + | chr3_4:76522440-76522459 | Msa0523190:CDS | 45.0% |
| ! | TGGGGTTGATCAGTCTTCAA+GGG | + | chr3_4:76522441-76522460 | Msa0523190:CDS | 45.0% |
| TGAAAACGTTACAGCTGAGC+TGG | + | chr3_4:76522465-76522484 | Msa0523190:CDS | 45.0% | |
| ATGACATGAGAAATGGACGG+TGG | - | chr3_4:76522760-76522779 | None:intergenic | 45.0% | |
| ! | TCAACACCTTGATGACCTTG+AGG | - | chr3_4:76522787-76522806 | None:intergenic | 45.0% |
| AGAAATAGAGCCAAAGCGGT+GGG | - | chr3_4:76521208-76521227 | None:intergenic | 45.0% | |
| !! | CAAAATCGGTTTGTAAGGCG+AGG | - | chr3_4:76521742-76521761 | None:intergenic | 45.0% |
| ! | ATGGGGTTGATCAGTCTTCA+AGG | + | chr3_4:76522440-76522459 | Msa0523190:CDS | 45.0% |
| ! | TGGGGTTGATCAGTCTTCAA+GGG | + | chr3_4:76522441-76522460 | Msa0523190:CDS | 45.0% |
| TGAAAACGTTACAGCTGAGC+TGG | + | chr3_4:76522465-76522484 | Msa0523190:CDS | 45.0% | |
| ATGACATGAGAAATGGACGG+TGG | - | chr3_4:76522760-76522779 | None:intergenic | 45.0% | |
| ! | TCAACACCTTGATGACCTTG+AGG | - | chr3_4:76522787-76522806 | None:intergenic | 45.0% |
| !! | TATACTTATTAAAAAAATAA+TGG | + | chr3_4:76521815-76521834 | Msa0523190:intron | 5.0% |
| !! | TATACTTATTAAAAAAATAA+TGG | + | chr3_4:76521815-76521834 | Msa0523190:intron | 5.0% |
| CAGAAATAGAGCCAAAGCGG+TGG | - | chr3_4:76521209-76521228 | None:intergenic | 50.0% | |
| AAACGTTACAGCTGAGCTGG+AGG | + | chr3_4:76522468-76522487 | Msa0523190:CDS | 50.0% | |
| !! | TGGAAAGGCACCCTTCTCTT+AGG | + | chr3_4:76522812-76522831 | Msa0523190:CDS | 50.0% |
| CAGAAATAGAGCCAAAGCGG+TGG | - | chr3_4:76521209-76521228 | None:intergenic | 50.0% | |
| AAACGTTACAGCTGAGCTGG+AGG | + | chr3_4:76522468-76522487 | Msa0523190:CDS | 50.0% | |
| !! | TGGAAAGGCACCCTTCTCTT+AGG | + | chr3_4:76522812-76522831 | Msa0523190:CDS | 50.0% |
| AGCATATCCACCCACCGCTT+TGG | + | chr3_4:76521195-76521214 | Msa0523190:five_prime_UTR | 55.0% | |
| AATAGAGCCAAAGCGGTGGG+TGG | - | chr3_4:76521205-76521224 | None:intergenic | 55.0% | |
| !! | TAGACACAAGGGCGCCATTC+AGG | + | chr3_4:76521446-76521465 | Msa0523190:CDS | 55.0% |
| GCCATTCAGGTCCGTCAAAG+AGG | + | chr3_4:76521459-76521478 | Msa0523190:CDS | 55.0% | |
| ! | GCCTCTTTGACGGACCTGAA+TGG | - | chr3_4:76521463-76521482 | None:intergenic | 55.0% |
| ! | TCGTGCGTTCGAGTTCTTCC+TGG | - | chr3_4:76522561-76522580 | None:intergenic | 55.0% |
| AGCATATCCACCCACCGCTT+TGG | + | chr3_4:76521195-76521214 | Msa0523190:five_prime_UTR | 55.0% | |
| AATAGAGCCAAAGCGGTGGG+TGG | - | chr3_4:76521205-76521224 | None:intergenic | 55.0% | |
| !! | TAGACACAAGGGCGCCATTC+AGG | + | chr3_4:76521446-76521465 | Msa0523190:CDS | 55.0% |
| GCCATTCAGGTCCGTCAAAG+AGG | + | chr3_4:76521459-76521478 | Msa0523190:CDS | 55.0% | |
| ! | GCCTCTTTGACGGACCTGAA+TGG | - | chr3_4:76521463-76521482 | None:intergenic | 55.0% |
| ! | TCGTGCGTTCGAGTTCTTCC+TGG | - | chr3_4:76522561-76522580 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 76521177 | 76523103 | 76521177 | ID=Msa0523190;Name=Msa0523190 |
| chr3_4 | mRNA | 76521177 | 76523103 | 76521177 | ID=Msa0523190-mRNA-1;Parent=Msa0523190;Name=Msa0523190-mRNA-1;_AED=0.00;_eAED=0.00;_QI=220|1|1|1|1|1|2|188|217 |
| chr3_4 | exon | 76521177 | 76521552 | 76521177 | ID=Msa0523190-mRNA-1:exon:22184;Parent=Msa0523190-mRNA-1 |
| chr3_4 | exon | 76522418 | 76523103 | 76522418 | ID=Msa0523190-mRNA-1:exon:22185;Parent=Msa0523190-mRNA-1 |
| chr3_4 | five_prime_UTR | 76521177 | 76521396 | 76521177 | ID=Msa0523190-mRNA-1:five_prime_utr;Parent=Msa0523190-mRNA-1 |
| chr3_4 | CDS | 76521397 | 76521552 | 76521397 | ID=Msa0523190-mRNA-1:cds;Parent=Msa0523190-mRNA-1 |
| chr3_4 | CDS | 76522418 | 76522915 | 76522418 | ID=Msa0523190-mRNA-1:cds;Parent=Msa0523190-mRNA-1 |
| chr3_4 | three_prime_UTR | 76522916 | 76523103 | 76522916 | ID=Msa0523190-mRNA-1:three_prime_utr;Parent=Msa0523190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
