Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385220 | XP_003603750.2 | 97.235 | 217 | 3 | 1 | 1 | 217 | 1 | 214 | 5.11e-149 | 423 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385220 | sp|F4I0N3|Y1572_ARATH | 43.519 | 216 | 83 | 8 | 8 | 210 | 1 | 190 | 3.29e-35 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385220 | G7J4R0 | 97.235 | 217 | 3 | 1 | 1 | 217 | 1 | 214 | 2.44e-149 | 423 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071850 | Msa0385220 | 0.801143 | 1.034891e-48 | -8.615850e-47 |
| Msa0071860 | Msa0385220 | 0.812597 | 3.914333e-51 | -8.615850e-47 |
| Msa0108880 | Msa0385220 | 0.806097 | 9.707539e-50 | -8.615850e-47 |
| Msa0125210 | Msa0385220 | 0.817893 | 2.603371e-52 | -8.615850e-47 |
| Msa0164400 | Msa0385220 | 0.821754 | 3.412657e-53 | -8.615850e-47 |
| Msa0194820 | Msa0385220 | 0.830539 | 2.774602e-55 | -8.615850e-47 |
| Msa0194840 | Msa0385220 | 0.821541 | 3.822737e-53 | -8.615850e-47 |
| Msa0385220 | Msa0418970 | 0.808692 | 2.734045e-50 | -8.615850e-47 |
| Msa0385220 | Msa0435550 | 0.996801 | 1.998166e-232 | -8.615850e-47 |
| Msa0385220 | Msa0479450 | 0.858479 | 8.011763e-63 | -8.615850e-47 |
| Msa0385220 | Msa0523190 | 0.979984 | 3.495891e-149 | -8.615850e-47 |
| Msa0385220 | Msa0616510 | 0.808699 | 2.723467e-50 | -8.615850e-47 |
| Msa0385220 | Msa0699840 | 0.826461 | 2.678431e-54 | -8.615850e-47 |
| Msa0385220 | Msa1341890 | 0.812271 | 4.610463e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385220 | MtrunA17_Chr3g0142591 | 97.235 | 217 | 3 | 1 | 1 | 217 | 1 | 214 | 4.70e-153 | 423 |
| Msa0385220 | MtrunA17_Chr5g0405371 | 45.946 | 222 | 102 | 10 | 1 | 216 | 1 | 210 | 3.11e-46 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385220 | AT1G75720.2 | 43.519 | 216 | 83 | 8 | 8 | 210 | 1 | 190 | 3.34e-36 | 126 |
| Msa0385220 | AT1G75720.1 | 43.981 | 216 | 84 | 9 | 8 | 210 | 1 | 192 | 9.30e-36 | 125 |
| Msa0385220 | AT3G51220.1 | 34.951 | 206 | 103 | 6 | 15 | 212 | 4 | 186 | 4.12e-27 | 102 |
| Msa0385220 | AT2G17940.1 | 33.673 | 196 | 119 | 4 | 16 | 205 | 13 | 203 | 2.06e-23 | 93.6 |
| Msa0385220 | AT1G75720.3 | 43.791 | 153 | 57 | 6 | 71 | 210 | 12 | 148 | 2.13e-20 | 84.3 |
Find 57 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGTCTATCTCTGTATTTC+TGG | 0.104808 | 3_1:+88726582 | None:intergenic |
| CATAATGGAGCAAATGAAAA+TGG | 0.193439 | 3_1:-88725590 | Msa0385220:CDS |
| GAGAGAAGAATGAGATAATT+AGG | 0.261473 | 3_1:+88726658 | None:intergenic |
| TAAAGAAGAAAGCATGTTAA+TGG | 0.275611 | 3_1:-88725495 | Msa0385220:CDS |
| TCATTCATCATGGAACTTCT+TGG | 0.313646 | 3_1:+88725111 | None:intergenic |
| ACCCGGTTAGGTAATTATTC+TGG | 0.316380 | 3_1:+88725037 | None:intergenic |
| TGGAAAGGCACCCTTCTCTT+AGG | 0.324014 | 3_1:-88725199 | Msa0385220:CDS |
| AAAGAGGCTGTTACATTATT+CGG | 0.326753 | 3_1:-88726538 | Msa0385220:CDS |
| TAGACACAAGGGCGCCATTC+AGG | 0.343210 | 3_1:-88726567 | Msa0385220:CDS |
| GAGACAATTGGCATAATATA+TGG | 0.345266 | 3_1:+88726720 | None:intergenic |
| TACCAGAATAATTACCTAAC+CGG | 0.350792 | 3_1:-88725039 | Msa0385220:three_prime_UTR |
| TTAGTAATGAACAATATTAA+AGG | 0.352027 | 3_1:+88726698 | None:intergenic |
| TCGTGCGTTCGAGTTCTTCC+TGG | 0.369083 | 3_1:+88725453 | None:intergenic |
| AAGTCATTAATTCCACTTAT+CGG | 0.388786 | 3_1:-88725164 | Msa0385220:CDS |
| ATAATGGAGCAAATGAAAAT+GGG | 0.406872 | 3_1:-88725589 | Msa0385220:CDS |
| TTCTTCTTCTTCCTAAGAGA+AGG | 0.423924 | 3_1:+88725188 | None:intergenic |
| AGCATATCCACCCACCGCTT+TGG | 0.425781 | 3_1:-88726818 | Msa0385220:five_prime_UTR |
| CTTGAATACAAAACCCGGTT+AGG | 0.438590 | 3_1:+88725025 | None:intergenic |
| GAAGAATGAGATAATTAGGT+TGG | 0.441692 | 3_1:+88726662 | None:intergenic |
| TGATGGAGTTTCAAAAGAAA+AGG | 0.446231 | 3_1:-88725295 | Msa0385220:CDS |
| TCATCAAGGTGTTGAGAAGT+TGG | 0.449442 | 3_1:-88725219 | Msa0385220:CDS |
| GGTGGATATGCTATTTGTCT+TGG | 0.454026 | 3_1:+88726829 | None:intergenic |
| AGGTAACATGACATGAGAAA+TGG | 0.454194 | 3_1:+88725247 | None:intergenic |
| ATAATATATGGTATGAAGAT+TGG | 0.459765 | 3_1:+88726732 | None:intergenic |
| ATTTGATGAAGAATTAATGA+TGG | 0.459950 | 3_1:-88725312 | Msa0385220:CDS |
| TCTAATCTATAGATTCATAA+TGG | 0.462589 | 3_1:-88725605 | Msa0385220:intron |
| TCTTCTTCTTCCTAAGAGAA+GGG | 0.487269 | 3_1:+88725189 | None:intergenic |
| ACAATATTAAAGGAGACAAT+TGG | 0.488865 | 3_1:+88726708 | None:intergenic |
| ATGGGGTTGATCAGTCTTCA+AGG | 0.494065 | 3_1:-88725571 | Msa0385220:CDS |
| TAATGTAACAGCCTCTTTGA+CGG | 0.499377 | 3_1:+88726543 | None:intergenic |
| TGAAAACGTTACAGCTGAGC+TGG | 0.505652 | 3_1:-88725546 | Msa0385220:CDS |
| ACATTGTATGTCATCTCTCC+AGG | 0.522311 | 3_1:-88725471 | Msa0385220:CDS |
| TACAAACTCATCATTCATCA+TGG | 0.529625 | 3_1:+88725101 | None:intergenic |
| ACAGAATTGTTCTAGTGAAG+TGG | 0.530563 | 3_1:-88726774 | Msa0385220:five_prime_UTR |
| AAAGATGAATAAGAAGAAAG+AGG | 0.535423 | 3_1:-88726620 | Msa0385220:exon |
| GCCTCTTTGACGGACCTGAA+TGG | 0.535948 | 3_1:+88726553 | None:intergenic |
| AAGATGAATAAGAAGAAAGA+GGG | 0.553271 | 3_1:-88726619 | Msa0385220:CDS |
| ACCAGAATAATTACCTAACC+GGG | 0.556561 | 3_1:-88725038 | Msa0385220:three_prime_UTR |
| GCCATTCAGGTCCGTCAAAG+AGG | 0.580083 | 3_1:-88726554 | Msa0385220:CDS |
| ATGTTACCTCAAGGTCATCA+AGG | 0.584789 | 3_1:-88725233 | Msa0385220:CDS |
| TCTCATGTCATGTTACCTCA+AGG | 0.592396 | 3_1:-88725242 | Msa0385220:CDS |
| TGGGGTTGATCAGTCTTCAA+GGG | 0.595004 | 3_1:-88725570 | Msa0385220:CDS |
| CAGAAATAGAGCCAAAGCGG+TGG | 0.595909 | 3_1:+88726807 | None:intergenic |
| AATAGAGCCAAAGCGGTGGG+TGG | 0.603252 | 3_1:+88726811 | None:intergenic |
| TCAACACCTTGATGACCTTG+AGG | 0.616815 | 3_1:+88725227 | None:intergenic |
| AGAAATAGAGCCAAAGCGGT+GGG | 0.632622 | 3_1:+88726808 | None:intergenic |
| AAGGTGTTGAGAAGTTGGAA+AGG | 0.636189 | 3_1:-88725214 | Msa0385220:CDS |
| TAATGGAGCAAATGAAAATG+GGG | 0.636381 | 3_1:-88725588 | Msa0385220:CDS |
| TCATTAATTCCACTTATCGG+AGG | 0.648652 | 3_1:-88725161 | Msa0385220:CDS |
| TGCAACTAAACTCAAACACC+AGG | 0.653524 | 3_1:-88726482 | Msa0385220:intron |
| AGAAACTTGAATACAAAACC+CGG | 0.657488 | 3_1:+88725020 | None:intergenic |
| AAACGTTACAGCTGAGCTGG+AGG | 0.666569 | 3_1:-88725543 | Msa0385220:CDS |
| ATGACATGAGAAATGGACGG+TGG | 0.709324 | 3_1:+88725254 | None:intergenic |
| TCTCAGAAATAGAGCCAAAG+CGG | 0.715352 | 3_1:+88726804 | None:intergenic |
| GAAATACAGAGATAGACACA+AGG | 0.731685 | 3_1:-88726579 | Msa0385220:CDS |
| AAATACAGAGATAGACACAA+GGG | 0.731958 | 3_1:-88726578 | Msa0385220:CDS |
| AACATGACATGAGAAATGGA+CGG | 0.745302 | 3_1:+88725251 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATTATTAATAATGTG+TGG | + | chr3_1:88726122-88726141 | None:intergenic | 10.0% |
| !! | AATAAATTATTAATAATGTG+TGG | + | chr3_1:88726122-88726141 | None:intergenic | 10.0% |
| !! | TTAGTAATGAACAATATTAA+AGG | + | chr3_1:88725071-88725090 | None:intergenic | 15.0% |
| !!! | ATTTTATTAGAGTATCAAAA+TGG | - | chr3_1:88725331-88725350 | Msa0385220:CDS | 15.0% |
| !! | ATTATAATATGTTTGTAAGT+GGG | - | chr3_1:88725466-88725485 | Msa0385220:CDS | 15.0% |
| !! | TATAAAATATAACCATCTAA+TGG | + | chr3_1:88725552-88725571 | None:intergenic | 15.0% |
| !! | TTAGTAATGAACAATATTAA+AGG | + | chr3_1:88725071-88725090 | None:intergenic | 15.0% |
| !!! | ATTTTATTAGAGTATCAAAA+TGG | - | chr3_1:88725331-88725350 | Msa0385220:CDS | 15.0% |
| !! | ATTATAATATGTTTGTAAGT+GGG | - | chr3_1:88725466-88725485 | Msa0385220:CDS | 15.0% |
| !! | TATAAAATATAACCATCTAA+TGG | + | chr3_1:88725552-88725571 | None:intergenic | 15.0% |
| !! | ATAATATATGGTATGAAGAT+TGG | + | chr3_1:88725037-88725056 | None:intergenic | 20.0% |
| !! | AATAAAATTGAATGATGTGA+TGG | + | chr3_1:88725319-88725338 | None:intergenic | 20.0% |
| !! | TTTAAATCACCAATTAAACT+TGG | - | chr3_1:88725375-88725394 | Msa0385220:CDS | 20.0% |
| !! | CATTATAATATGTTTGTAAG+TGG | - | chr3_1:88725465-88725484 | Msa0385220:CDS | 20.0% |
| !! | TTATAATATGTTTGTAAGTG+GGG | - | chr3_1:88725467-88725486 | Msa0385220:CDS | 20.0% |
| !! | TACTCAAATTCTTAATCATT+TGG | - | chr3_1:88725897-88725916 | Msa0385220:intron | 20.0% |
| !! | AAATTTAATTATTGATCCGT+AGG | - | chr3_1:88725924-88725943 | Msa0385220:intron | 20.0% |
| !!! | TTTTACTTTTTACATACCTA+CGG | + | chr3_1:88725943-88725962 | None:intergenic | 20.0% |
| !!! | TAAGATGCACAAAATAATTT+TGG | + | chr3_1:88726021-88726040 | None:intergenic | 20.0% |
| !! | TTAGAGAATAGAGATTAATA+AGG | - | chr3_1:88726038-88726057 | Msa0385220:intron | 20.0% |
| !! | TCTAATCTATAGATTCATAA+TGG | - | chr3_1:88726161-88726180 | Msa0385220:intron | 20.0% |
| !! | ATTTGATGAAGAATTAATGA+TGG | - | chr3_1:88726454-88726473 | Msa0385220:intron | 20.0% |
| !! | ATAATATATGGTATGAAGAT+TGG | + | chr3_1:88725037-88725056 | None:intergenic | 20.0% |
| !! | AATAAAATTGAATGATGTGA+TGG | + | chr3_1:88725319-88725338 | None:intergenic | 20.0% |
| !! | TTTAAATCACCAATTAAACT+TGG | - | chr3_1:88725375-88725394 | Msa0385220:CDS | 20.0% |
| !! | CATTATAATATGTTTGTAAG+TGG | - | chr3_1:88725465-88725484 | Msa0385220:CDS | 20.0% |
| !! | TTATAATATGTTTGTAAGTG+GGG | - | chr3_1:88725467-88725486 | Msa0385220:CDS | 20.0% |
| !! | TACTCAAATTCTTAATCATT+TGG | - | chr3_1:88725897-88725916 | Msa0385220:intron | 20.0% |
| !! | AAATTTAATTATTGATCCGT+AGG | - | chr3_1:88725924-88725943 | Msa0385220:intron | 20.0% |
| !!! | TTTTACTTTTTACATACCTA+CGG | + | chr3_1:88725943-88725962 | None:intergenic | 20.0% |
| !!! | TAAGATGCACAAAATAATTT+TGG | + | chr3_1:88726021-88726040 | None:intergenic | 20.0% |
| !! | TTAGAGAATAGAGATTAATA+AGG | - | chr3_1:88726038-88726057 | Msa0385220:intron | 20.0% |
| !! | TCTAATCTATAGATTCATAA+TGG | - | chr3_1:88726161-88726180 | Msa0385220:intron | 20.0% |
| !! | ATTTGATGAAGAATTAATGA+TGG | - | chr3_1:88726454-88726473 | Msa0385220:intron | 20.0% |
| ! | ACAATATTAAAGGAGACAAT+TGG | + | chr3_1:88725061-88725080 | None:intergenic | 25.0% |
| ! | AAAGATGAATAAGAAGAAAG+AGG | - | chr3_1:88725146-88725165 | Msa0385220:CDS | 25.0% |
| ! | AAGATGAATAAGAAGAAAGA+GGG | - | chr3_1:88725147-88725166 | Msa0385220:CDS | 25.0% |
| !! | ATTAGAGTATCAAAATGGTT+AGG | - | chr3_1:88725336-88725355 | Msa0385220:CDS | 25.0% |
| ! | GTAACTCAATCTTACAAAAT+CGG | + | chr3_1:88725511-88725530 | None:intergenic | 25.0% |
| ! | TCCAAATATTATCCATTAGA+TGG | - | chr3_1:88725537-88725556 | Msa0385220:CDS | 25.0% |
| !! | ACCATCTAATGGATAATATT+TGG | + | chr3_1:88725541-88725560 | None:intergenic | 25.0% |
| ! | ACTTCCTTTATTCAATTAGA+CGG | + | chr3_1:88725757-88725776 | None:intergenic | 25.0% |
| !! | TTCAATGTAGTCTTACAATA+TGG | - | chr3_1:88725854-88725873 | Msa0385220:intron | 25.0% |
| ! | TTACTGTGTAAGATTAGTAT+CGG | - | chr3_1:88725971-88725990 | Msa0385220:intron | 25.0% |
| !! | ATAATGGAGCAAATGAAAAT+GGG | - | chr3_1:88726177-88726196 | Msa0385220:intron | 25.0% |
| !! | TAAAGAAGAAAGCATGTTAA+TGG | - | chr3_1:88726271-88726290 | Msa0385220:intron | 25.0% |
| ! | AAGTCATTAATTCCACTTAT+CGG | - | chr3_1:88726602-88726621 | Msa0385220:CDS | 25.0% |
| !!! | AGGTATTTTTTCTAGGAAAA+AGG | - | chr3_1:88726625-88726644 | Msa0385220:exon | 25.0% |
| !!! | GGTATTTTTTCTAGGAAAAA+GGG | - | chr3_1:88726626-88726645 | Msa0385220:exon | 25.0% |
| ! | ACAATATTAAAGGAGACAAT+TGG | + | chr3_1:88725061-88725080 | None:intergenic | 25.0% |
| ! | AAAGATGAATAAGAAGAAAG+AGG | - | chr3_1:88725146-88725165 | Msa0385220:CDS | 25.0% |
| ! | AAGATGAATAAGAAGAAAGA+GGG | - | chr3_1:88725147-88725166 | Msa0385220:CDS | 25.0% |
| !! | ATTAGAGTATCAAAATGGTT+AGG | - | chr3_1:88725336-88725355 | Msa0385220:CDS | 25.0% |
| ! | GTAACTCAATCTTACAAAAT+CGG | + | chr3_1:88725511-88725530 | None:intergenic | 25.0% |
| ! | TCCAAATATTATCCATTAGA+TGG | - | chr3_1:88725537-88725556 | Msa0385220:CDS | 25.0% |
| !! | ACCATCTAATGGATAATATT+TGG | + | chr3_1:88725541-88725560 | None:intergenic | 25.0% |
| ! | ACTTCCTTTATTCAATTAGA+CGG | + | chr3_1:88725757-88725776 | None:intergenic | 25.0% |
| !! | TTCAATGTAGTCTTACAATA+TGG | - | chr3_1:88725854-88725873 | Msa0385220:intron | 25.0% |
| ! | TTACTGTGTAAGATTAGTAT+CGG | - | chr3_1:88725971-88725990 | Msa0385220:intron | 25.0% |
| !! | ATAATGGAGCAAATGAAAAT+GGG | - | chr3_1:88726177-88726196 | Msa0385220:intron | 25.0% |
| !! | TAAAGAAGAAAGCATGTTAA+TGG | - | chr3_1:88726271-88726290 | Msa0385220:intron | 25.0% |
| ! | AAGTCATTAATTCCACTTAT+CGG | - | chr3_1:88726602-88726621 | Msa0385220:CDS | 25.0% |
| !!! | AGGTATTTTTTCTAGGAAAA+AGG | - | chr3_1:88726625-88726644 | Msa0385220:exon | 25.0% |
| !!! | GGTATTTTTTCTAGGAAAAA+GGG | - | chr3_1:88726626-88726645 | Msa0385220:exon | 25.0% |
| GAGACAATTGGCATAATATA+TGG | + | chr3_1:88725049-88725068 | None:intergenic | 30.0% | |
| GAAGAATGAGATAATTAGGT+TGG | + | chr3_1:88725107-88725126 | None:intergenic | 30.0% | |
| GAGAGAAGAATGAGATAATT+AGG | + | chr3_1:88725111-88725130 | None:intergenic | 30.0% | |
| AAATACAGAGATAGACACAA+GGG | - | chr3_1:88725188-88725207 | Msa0385220:CDS | 30.0% | |
| AAAGAGGCTGTTACATTATT+CGG | - | chr3_1:88725228-88725247 | Msa0385220:CDS | 30.0% | |
| !! | TCTTACAAAATCGGTTTGTA+AGG | + | chr3_1:88725502-88725521 | None:intergenic | 30.0% |
| TTAAAAAAATAACGGCCAAG+AGG | - | chr3_1:88725578-88725597 | Msa0385220:CDS | 30.0% | |
| GTTTCAAAGTAACATAGGAT+AGG | + | chr3_1:88725649-88725668 | None:intergenic | 30.0% | |
| !! | ATCCTATGTTACTTTGAAAC+AGG | - | chr3_1:88725649-88725668 | Msa0385220:intron | 30.0% |
| !! | TCCTATGTTACTTTGAAACA+GGG | - | chr3_1:88725650-88725669 | Msa0385220:intron | 30.0% |
| TTCACCGTCTAATTGAATAA+AGG | - | chr3_1:88725750-88725769 | Msa0385220:intron | 30.0% | |
| ! | CATAATGGAGCAAATGAAAA+TGG | - | chr3_1:88726176-88726195 | Msa0385220:intron | 30.0% |
| TAATGGAGCAAATGAAAATG+GGG | - | chr3_1:88726178-88726197 | Msa0385220:intron | 30.0% | |
| CGAAACTGAAAAAAATCAAG+TGG | - | chr3_1:88726364-88726383 | Msa0385220:intron | 30.0% | |
| ! | TCTTGAACTTTTCACTTCAA+AGG | + | chr3_1:88726435-88726454 | None:intergenic | 30.0% |
| TGATGGAGTTTCAAAAGAAA+AGG | - | chr3_1:88726471-88726490 | Msa0385220:intron | 30.0% | |
| !!! | TTATCGGAGGTATTTTTTCT+AGG | - | chr3_1:88726618-88726637 | Msa0385220:CDS | 30.0% |
| TACAAACTCATCATTCATCA+TGG | + | chr3_1:88726668-88726687 | None:intergenic | 30.0% | |
| TACCAGAATAATTACCTAAC+CGG | - | chr3_1:88726727-88726746 | Msa0385220:five_prime_UTR | 30.0% | |
| AGAAACTTGAATACAAAACC+CGG | + | chr3_1:88726749-88726768 | None:intergenic | 30.0% | |
| GAGACAATTGGCATAATATA+TGG | + | chr3_1:88725049-88725068 | None:intergenic | 30.0% | |
| GAAGAATGAGATAATTAGGT+TGG | + | chr3_1:88725107-88725126 | None:intergenic | 30.0% | |
| GAGAGAAGAATGAGATAATT+AGG | + | chr3_1:88725111-88725130 | None:intergenic | 30.0% | |
| AAATACAGAGATAGACACAA+GGG | - | chr3_1:88725188-88725207 | Msa0385220:CDS | 30.0% | |
| AAAGAGGCTGTTACATTATT+CGG | - | chr3_1:88725228-88725247 | Msa0385220:CDS | 30.0% | |
| !! | TCTTACAAAATCGGTTTGTA+AGG | + | chr3_1:88725502-88725521 | None:intergenic | 30.0% |
| TTAAAAAAATAACGGCCAAG+AGG | - | chr3_1:88725578-88725597 | Msa0385220:CDS | 30.0% | |
| GTTTCAAAGTAACATAGGAT+AGG | + | chr3_1:88725649-88725668 | None:intergenic | 30.0% | |
| !! | ATCCTATGTTACTTTGAAAC+AGG | - | chr3_1:88725649-88725668 | Msa0385220:intron | 30.0% |
| !! | TCCTATGTTACTTTGAAACA+GGG | - | chr3_1:88725650-88725669 | Msa0385220:intron | 30.0% |
| TTCACCGTCTAATTGAATAA+AGG | - | chr3_1:88725750-88725769 | Msa0385220:intron | 30.0% | |
| ! | CATAATGGAGCAAATGAAAA+TGG | - | chr3_1:88726176-88726195 | Msa0385220:intron | 30.0% |
| TAATGGAGCAAATGAAAATG+GGG | - | chr3_1:88726178-88726197 | Msa0385220:intron | 30.0% | |
| CGAAACTGAAAAAAATCAAG+TGG | - | chr3_1:88726364-88726383 | Msa0385220:intron | 30.0% | |
| ! | TCTTGAACTTTTCACTTCAA+AGG | + | chr3_1:88726435-88726454 | None:intergenic | 30.0% |
| TGATGGAGTTTCAAAAGAAA+AGG | - | chr3_1:88726471-88726490 | Msa0385220:intron | 30.0% | |
| !!! | TTATCGGAGGTATTTTTTCT+AGG | - | chr3_1:88726618-88726637 | Msa0385220:CDS | 30.0% |
| TACAAACTCATCATTCATCA+TGG | + | chr3_1:88726668-88726687 | None:intergenic | 30.0% | |
| TACCAGAATAATTACCTAAC+CGG | - | chr3_1:88726727-88726746 | Msa0385220:five_prime_UTR | 30.0% | |
| AGAAACTTGAATACAAAACC+CGG | + | chr3_1:88726749-88726768 | None:intergenic | 30.0% | |
| ACAGAATTGTTCTAGTGAAG+TGG | - | chr3_1:88724992-88725011 | Msa0385220:three_prime_UTR | 35.0% | |
| TGTGTCTATCTCTGTATTTC+TGG | + | chr3_1:88725187-88725206 | None:intergenic | 35.0% | |
| GAAATACAGAGATAGACACA+AGG | - | chr3_1:88725187-88725206 | Msa0385220:CDS | 35.0% | |
| TAATGTAACAGCCTCTTTGA+CGG | + | chr3_1:88725226-88725245 | None:intergenic | 35.0% | |
| !! | TTCGGTGATAAAGTTTTAGC+TGG | - | chr3_1:88725246-88725265 | Msa0385220:CDS | 35.0% |
| GTGACACATCCAAGTTTAAT+TGG | + | chr3_1:88725387-88725406 | None:intergenic | 35.0% | |
| AAATGTCCAAGAATTCCTCT+TGG | + | chr3_1:88725596-88725615 | None:intergenic | 35.0% | |
| AGGAGAATCTTATTGATGGA+TGG | + | chr3_1:88725629-88725648 | None:intergenic | 35.0% | |
| GGATAGGAGAATCTTATTGA+TGG | + | chr3_1:88725633-88725652 | None:intergenic | 35.0% | |
| ACCCTGTTTCAAAGTAACAT+AGG | + | chr3_1:88725654-88725673 | None:intergenic | 35.0% | |
| TCCTCATCATCACTTGTTTA+TGG | - | chr3_1:88726080-88726099 | Msa0385220:intron | 35.0% | |
| ! | ACCATAAACAAGTGATGATG+AGG | + | chr3_1:88726084-88726103 | None:intergenic | 35.0% |
| AACATGACATGAGAAATGGA+CGG | + | chr3_1:88726518-88726537 | None:intergenic | 35.0% | |
| AGGTAACATGACATGAGAAA+TGG | + | chr3_1:88726522-88726541 | None:intergenic | 35.0% | |
| TCTTCTTCTTCCTAAGAGAA+GGG | + | chr3_1:88726580-88726599 | None:intergenic | 35.0% | |
| TTCTTCTTCTTCCTAAGAGA+AGG | + | chr3_1:88726581-88726600 | None:intergenic | 35.0% | |
| TCATTAATTCCACTTATCGG+AGG | - | chr3_1:88726605-88726624 | Msa0385220:CDS | 35.0% | |
| GAAAAAATACCTCCGATAAG+TGG | + | chr3_1:88726617-88726636 | None:intergenic | 35.0% | |
| TCATTCATCATGGAACTTCT+TGG | + | chr3_1:88726658-88726677 | None:intergenic | 35.0% | |
| ACCAGAATAATTACCTAACC+GGG | - | chr3_1:88726728-88726747 | Msa0385220:five_prime_UTR | 35.0% | |
| ACAGAATTGTTCTAGTGAAG+TGG | - | chr3_1:88724992-88725011 | Msa0385220:three_prime_UTR | 35.0% | |
| TGTGTCTATCTCTGTATTTC+TGG | + | chr3_1:88725187-88725206 | None:intergenic | 35.0% | |
| GAAATACAGAGATAGACACA+AGG | - | chr3_1:88725187-88725206 | Msa0385220:CDS | 35.0% | |
| TAATGTAACAGCCTCTTTGA+CGG | + | chr3_1:88725226-88725245 | None:intergenic | 35.0% | |
| !! | TTCGGTGATAAAGTTTTAGC+TGG | - | chr3_1:88725246-88725265 | Msa0385220:CDS | 35.0% |
| GTGACACATCCAAGTTTAAT+TGG | + | chr3_1:88725387-88725406 | None:intergenic | 35.0% | |
| AAATGTCCAAGAATTCCTCT+TGG | + | chr3_1:88725596-88725615 | None:intergenic | 35.0% | |
| AGGAGAATCTTATTGATGGA+TGG | + | chr3_1:88725629-88725648 | None:intergenic | 35.0% | |
| GGATAGGAGAATCTTATTGA+TGG | + | chr3_1:88725633-88725652 | None:intergenic | 35.0% | |
| ACCCTGTTTCAAAGTAACAT+AGG | + | chr3_1:88725654-88725673 | None:intergenic | 35.0% | |
| TCCTCATCATCACTTGTTTA+TGG | - | chr3_1:88726080-88726099 | Msa0385220:intron | 35.0% | |
| ! | ACCATAAACAAGTGATGATG+AGG | + | chr3_1:88726084-88726103 | None:intergenic | 35.0% |
| AACATGACATGAGAAATGGA+CGG | + | chr3_1:88726518-88726537 | None:intergenic | 35.0% | |
| AGGTAACATGACATGAGAAA+TGG | + | chr3_1:88726522-88726541 | None:intergenic | 35.0% | |
| TCTTCTTCTTCCTAAGAGAA+GGG | + | chr3_1:88726580-88726599 | None:intergenic | 35.0% | |
| TTCTTCTTCTTCCTAAGAGA+AGG | + | chr3_1:88726581-88726600 | None:intergenic | 35.0% | |
| TCATTAATTCCACTTATCGG+AGG | - | chr3_1:88726605-88726624 | Msa0385220:CDS | 35.0% | |
| GAAAAAATACCTCCGATAAG+TGG | + | chr3_1:88726617-88726636 | None:intergenic | 35.0% | |
| TCATTCATCATGGAACTTCT+TGG | + | chr3_1:88726658-88726677 | None:intergenic | 35.0% | |
| ACCAGAATAATTACCTAACC+GGG | - | chr3_1:88726728-88726747 | Msa0385220:five_prime_UTR | 35.0% | |
| ! | GGTGGATATGCTATTTGTCT+TGG | + | chr3_1:88724940-88724959 | None:intergenic | 40.0% |
| TCTCAGAAATAGAGCCAAAG+CGG | + | chr3_1:88724965-88724984 | None:intergenic | 40.0% | |
| TGCAACTAAACTCAAACACC+AGG | - | chr3_1:88725284-88725303 | Msa0385220:CDS | 40.0% | |
| ! | ATGTGATGGTGTATAGAACC+TGG | + | chr3_1:88725305-88725324 | None:intergenic | 40.0% |
| TGTCGTATATCACAGAACGT+AGG | + | chr3_1:88725447-88725466 | None:intergenic | 40.0% | |
| ACATTGTATGTCATCTCTCC+AGG | - | chr3_1:88726295-88726314 | Msa0385220:intron | 40.0% | |
| TCTCATGTCATGTTACCTCA+AGG | - | chr3_1:88726524-88726543 | Msa0385220:CDS | 40.0% | |
| ATGTTACCTCAAGGTCATCA+AGG | - | chr3_1:88726533-88726552 | Msa0385220:CDS | 40.0% | |
| !! | TCATCAAGGTGTTGAGAAGT+TGG | - | chr3_1:88726547-88726566 | Msa0385220:CDS | 40.0% |
| !! | AAGGTGTTGAGAAGTTGGAA+AGG | - | chr3_1:88726552-88726571 | Msa0385220:CDS | 40.0% |
| ACCCGGTTAGGTAATTATTC+TGG | + | chr3_1:88726732-88726751 | None:intergenic | 40.0% | |
| CTTGAATACAAAACCCGGTT+AGG | + | chr3_1:88726744-88726763 | None:intergenic | 40.0% | |
| ! | GGTGGATATGCTATTTGTCT+TGG | + | chr3_1:88724940-88724959 | None:intergenic | 40.0% |
| TCTCAGAAATAGAGCCAAAG+CGG | + | chr3_1:88724965-88724984 | None:intergenic | 40.0% | |
| TGCAACTAAACTCAAACACC+AGG | - | chr3_1:88725284-88725303 | Msa0385220:CDS | 40.0% | |
| ! | ATGTGATGGTGTATAGAACC+TGG | + | chr3_1:88725305-88725324 | None:intergenic | 40.0% |
| TGTCGTATATCACAGAACGT+AGG | + | chr3_1:88725447-88725466 | None:intergenic | 40.0% | |
| ACATTGTATGTCATCTCTCC+AGG | - | chr3_1:88726295-88726314 | Msa0385220:intron | 40.0% | |
| TCTCATGTCATGTTACCTCA+AGG | - | chr3_1:88726524-88726543 | Msa0385220:CDS | 40.0% | |
| ATGTTACCTCAAGGTCATCA+AGG | - | chr3_1:88726533-88726552 | Msa0385220:CDS | 40.0% | |
| !! | TCATCAAGGTGTTGAGAAGT+TGG | - | chr3_1:88726547-88726566 | Msa0385220:CDS | 40.0% |
| !! | AAGGTGTTGAGAAGTTGGAA+AGG | - | chr3_1:88726552-88726571 | Msa0385220:CDS | 40.0% |
| ACCCGGTTAGGTAATTATTC+TGG | + | chr3_1:88726732-88726751 | None:intergenic | 40.0% | |
| CTTGAATACAAAACCCGGTT+AGG | + | chr3_1:88726744-88726763 | None:intergenic | 40.0% | |
| AGAAATAGAGCCAAAGCGGT+GGG | + | chr3_1:88724961-88724980 | None:intergenic | 45.0% | |
| !! | CAAAATCGGTTTGTAAGGCG+AGG | + | chr3_1:88725497-88725516 | None:intergenic | 45.0% |
| TAACGGCCAAGAGGAATTCT+TGG | - | chr3_1:88725587-88725606 | Msa0385220:CDS | 45.0% | |
| ! | ATGGGGTTGATCAGTCTTCA+AGG | - | chr3_1:88726195-88726214 | Msa0385220:intron | 45.0% |
| ! | TGGGGTTGATCAGTCTTCAA+GGG | - | chr3_1:88726196-88726215 | Msa0385220:intron | 45.0% |
| TGAAAACGTTACAGCTGAGC+TGG | - | chr3_1:88726220-88726239 | Msa0385220:intron | 45.0% | |
| ATGACATGAGAAATGGACGG+TGG | + | chr3_1:88726515-88726534 | None:intergenic | 45.0% | |
| ! | TCAACACCTTGATGACCTTG+AGG | + | chr3_1:88726542-88726561 | None:intergenic | 45.0% |
| AGAAATAGAGCCAAAGCGGT+GGG | + | chr3_1:88724961-88724980 | None:intergenic | 45.0% | |
| !! | CAAAATCGGTTTGTAAGGCG+AGG | + | chr3_1:88725497-88725516 | None:intergenic | 45.0% |
| TAACGGCCAAGAGGAATTCT+TGG | - | chr3_1:88725587-88725606 | Msa0385220:CDS | 45.0% | |
| ! | ATGGGGTTGATCAGTCTTCA+AGG | - | chr3_1:88726195-88726214 | Msa0385220:intron | 45.0% |
| ! | TGGGGTTGATCAGTCTTCAA+GGG | - | chr3_1:88726196-88726215 | Msa0385220:intron | 45.0% |
| TGAAAACGTTACAGCTGAGC+TGG | - | chr3_1:88726220-88726239 | Msa0385220:intron | 45.0% | |
| ATGACATGAGAAATGGACGG+TGG | + | chr3_1:88726515-88726534 | None:intergenic | 45.0% | |
| ! | TCAACACCTTGATGACCTTG+AGG | + | chr3_1:88726542-88726561 | None:intergenic | 45.0% |
| !! | TATACTTATTAAAAAAATAA+CGG | - | chr3_1:88725570-88725589 | Msa0385220:CDS | 5.0% |
| !! | TATACTTATTAAAAAAATAA+CGG | - | chr3_1:88725570-88725589 | Msa0385220:CDS | 5.0% |
| CAGAAATAGAGCCAAAGCGG+TGG | + | chr3_1:88724962-88724981 | None:intergenic | 50.0% | |
| AAACGTTACAGCTGAGCTGG+AGG | - | chr3_1:88726223-88726242 | Msa0385220:intron | 50.0% | |
| !! | TGGAAAGGCACCCTTCTCTT+AGG | - | chr3_1:88726567-88726586 | Msa0385220:CDS | 50.0% |
| CAGAAATAGAGCCAAAGCGG+TGG | + | chr3_1:88724962-88724981 | None:intergenic | 50.0% | |
| AAACGTTACAGCTGAGCTGG+AGG | - | chr3_1:88726223-88726242 | Msa0385220:intron | 50.0% | |
| !! | TGGAAAGGCACCCTTCTCTT+AGG | - | chr3_1:88726567-88726586 | Msa0385220:CDS | 50.0% |
| AGCATATCCACCCACCGCTT+TGG | - | chr3_1:88724948-88724967 | Msa0385220:three_prime_UTR | 55.0% | |
| AATAGAGCCAAAGCGGTGGG+TGG | + | chr3_1:88724958-88724977 | None:intergenic | 55.0% | |
| !! | TAGACACAAGGGCGCCATTC+AGG | - | chr3_1:88725199-88725218 | Msa0385220:CDS | 55.0% |
| GCCATTCAGGTCCGTCAAAG+AGG | - | chr3_1:88725212-88725231 | Msa0385220:CDS | 55.0% | |
| ! | GCCTCTTTGACGGACCTGAA+TGG | + | chr3_1:88725216-88725235 | None:intergenic | 55.0% |
| ! | TCGTGCGTTCGAGTTCTTCC+TGG | + | chr3_1:88726316-88726335 | None:intergenic | 55.0% |
| AGCATATCCACCCACCGCTT+TGG | - | chr3_1:88724948-88724967 | Msa0385220:three_prime_UTR | 55.0% | |
| AATAGAGCCAAAGCGGTGGG+TGG | + | chr3_1:88724958-88724977 | None:intergenic | 55.0% | |
| !! | TAGACACAAGGGCGCCATTC+AGG | - | chr3_1:88725199-88725218 | Msa0385220:CDS | 55.0% |
| GCCATTCAGGTCCGTCAAAG+AGG | - | chr3_1:88725212-88725231 | Msa0385220:CDS | 55.0% | |
| ! | GCCTCTTTGACGGACCTGAA+TGG | + | chr3_1:88725216-88725235 | None:intergenic | 55.0% |
| ! | TCGTGCGTTCGAGTTCTTCC+TGG | + | chr3_1:88726316-88726335 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 88724930 | 88726858 | 88724930 | ID=Msa0385220;Name=Msa0385220 |
| chr3_1 | mRNA | 88724930 | 88726858 | 88724930 | ID=Msa0385220-mRNA-1;Parent=Msa0385220;Name=Msa0385220-mRNA-1;_AED=0.00;_eAED=0.00;_QI=220|1|1|1|1|1|2|188|217 |
| chr3_1 | exon | 88724930 | 88725615 | 88724930 | ID=Msa0385220-mRNA-1:exon:23983;Parent=Msa0385220-mRNA-1 |
| chr3_1 | exon | 88726483 | 88726858 | 88726483 | ID=Msa0385220-mRNA-1:exon:23982;Parent=Msa0385220-mRNA-1 |
| chr3_1 | five_prime_UTR | 88726639 | 88726858 | 88726639 | ID=Msa0385220-mRNA-1:five_prime_utr;Parent=Msa0385220-mRNA-1 |
| chr3_1 | CDS | 88726483 | 88726638 | 88726483 | ID=Msa0385220-mRNA-1:cds;Parent=Msa0385220-mRNA-1 |
| chr3_1 | CDS | 88725118 | 88725615 | 88725118 | ID=Msa0385220-mRNA-1:cds;Parent=Msa0385220-mRNA-1 |
| chr3_1 | three_prime_UTR | 88724930 | 88725117 | 88724930 | ID=Msa0385220-mRNA-1:three_prime_utr;Parent=Msa0385220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
