Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529220 | XP_003630256.2 | 91.558 | 154 | 10 | 1 | 31 | 181 | 289 | 442 | 2.33e-92 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529220 | sp|Q6ZD63|FAS2_ORYSJ | 46.452 | 155 | 59 | 3 | 31 | 182 | 289 | 422 | 2.86e-35 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529220 | G7LE10 | 91.558 | 154 | 10 | 1 | 31 | 181 | 289 | 442 | 1.11e-92 | 291 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0529220 | 0.804612 | 1.986887e-49 | -8.615850e-47 |
| Msa0090400 | Msa0529220 | 0.823894 | 1.083335e-53 | -8.615850e-47 |
| Msa0097260 | Msa0529220 | 0.802264 | 6.093045e-49 | -8.615850e-47 |
| Msa0137880 | Msa0529220 | 0.800268 | 1.560572e-48 | -8.615850e-47 |
| Msa0225860 | Msa0529220 | 0.800048 | 1.730537e-48 | -8.615850e-47 |
| Msa0244640 | Msa0529220 | 0.802491 | 5.469536e-49 | -8.615850e-47 |
| Msa0298470 | Msa0529220 | 0.802543 | 5.336271e-49 | -8.615850e-47 |
| Msa0529220 | Msa0530780 | 0.808587 | 2.878096e-50 | -8.615850e-47 |
| Msa0529220 | Msa0580200 | 0.812905 | 3.350413e-51 | -8.615850e-47 |
| Msa0529220 | Msa0580370 | 0.814807 | 1.276245e-51 | -8.615850e-47 |
| Msa0529220 | Msa0795870 | 0.803848 | 2.865268e-49 | -8.615850e-47 |
| Msa0529220 | Msa0833650 | 0.811876 | 5.623254e-51 | -8.615850e-47 |
| Msa0529220 | Msa1090140 | 0.866770 | 2.236636e-65 | -8.615850e-47 |
| Msa0529220 | Msa1132840 | 0.819575 | 1.080646e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529220 | MtrunA17_Chr8g0384161 | 91.558 | 154 | 10 | 1 | 31 | 181 | 289 | 442 | 2.14e-96 | 291 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529220 | AT5G64630.3 | 70.000 | 80 | 24 | 0 | 40 | 119 | 244 | 323 | 2.86e-35 | 128 |
| Msa0529220 | AT5G64630.1 | 74.324 | 74 | 19 | 0 | 40 | 113 | 303 | 376 | 6.89e-35 | 127 |
| Msa0529220 | AT5G64630.2 | 70.000 | 80 | 24 | 0 | 40 | 119 | 303 | 382 | 7.15e-35 | 128 |
Find 48 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAGATGGTTTCTGCTCTT+TGG | 0.262968 | 4_1:+2615374 | Msa0529220:CDS |
| ATAGAAGCATCTGCGGATAT+TGG | 0.310571 | 4_1:+2615657 | Msa0529220:CDS |
| TAGAAGCATCTGCGGATATT+GGG | 0.324017 | 4_1:+2615658 | Msa0529220:CDS |
| TGTAGCAGAAAGCATGAAAA+TGG | 0.326121 | 4_1:+2615605 | Msa0529220:CDS |
| TACCAGGTAATATCTGTTAC+TGG | 0.342872 | 4_1:-2615225 | None:intergenic |
| ACGGCAAATACAATGCGATA+TGG | 0.353051 | 4_1:-2615123 | None:intergenic |
| GCGAGGAGAATGCTAAATAA+TGG | 0.354160 | 4_1:-2615353 | None:intergenic |
| TTGTTTATCTATTGATATAG+TGG | 0.363841 | 4_1:+2614924 | Msa0529220:five_prime_UTR |
| AACGAATCATCGACTTGATC+GGG | 0.409623 | 4_1:-2614975 | None:intergenic |
| CAGAACTTTAAAATAATGAT+TGG | 0.412768 | 4_1:-2615025 | None:intergenic |
| AATGATGCTGTACTGCCAAC+TGG | 0.420457 | 4_1:+2615567 | Msa0529220:CDS |
| TCTCCAATAGCAATATTTGC+TGG | 0.427714 | 4_1:+2615189 | Msa0529220:CDS |
| CGGCAAATACAATGCGATAT+GGG | 0.436720 | 4_1:-2615122 | None:intergenic |
| CGAGGAGAATGCTAAATAAT+GGG | 0.437934 | 4_1:-2615352 | None:intergenic |
| AGTTGGCAGTACAGCATCAT+TGG | 0.441293 | 4_1:-2615565 | None:intergenic |
| AGATGGTTTCTGCTCTTTGG+TGG | 0.462913 | 4_1:+2615377 | Msa0529220:CDS |
| AGGCCAGCAAATATTGCTAT+TGG | 0.470462 | 4_1:-2615192 | None:intergenic |
| GAAAATGGAAGTGGAAGAAA+AGG | 0.470474 | 4_1:+2615620 | Msa0529220:CDS |
| AATGCTAAATAATGGGCATC+AGG | 0.480540 | 4_1:-2615345 | None:intergenic |
| TTGCAGGAAACTGTTGTAGA+TGG | 0.498465 | 4_1:+2617567 | Msa0529220:intron |
| GACAATGCATCCTCTGAAAG+AGG | 0.516287 | 4_1:-2615048 | None:intergenic |
| AAGAGTGTTAGAGTGAGTAT+TGG | 0.516526 | 4_1:+2614870 | None:intergenic |
| TGTTCTAGAAGAAAATGTCT+TGG | 0.518483 | 4_1:+2615515 | Msa0529220:intron |
| ACTTTAAAATAATGATTGGT+AGG | 0.518669 | 4_1:-2615021 | None:intergenic |
| TCTAGAAGAAAATGTCTTGG+AGG | 0.520903 | 4_1:+2615518 | Msa0529220:intron |
| GAGTTCGAAAATGACGAACT+TGG | 0.523533 | 4_1:+2615399 | Msa0529220:CDS |
| CTCCAGTAACAGATATTACC+TGG | 0.525209 | 4_1:+2615223 | Msa0529220:CDS |
| AAACGAATCATCGACTTGAT+CGG | 0.525313 | 4_1:-2614976 | None:intergenic |
| GTACTGCCAACTGGGAGTGT+TGG | 0.531914 | 4_1:+2615576 | Msa0529220:CDS |
| CAGCATCATTGGCTGTCTGA+AGG | 0.533000 | 4_1:-2615554 | None:intergenic |
| ATCGACTTGATCGGGGTACA+AGG | 0.539220 | 4_1:-2614967 | None:intergenic |
| TGCTTACTTGATAAGCAGTA+AGG | 0.544917 | 4_1:-2615426 | None:intergenic |
| AGAAGCATCTGCGGATATTG+GGG | 0.556121 | 4_1:+2615659 | Msa0529220:CDS |
| TAAAGTTCTGCCTCTTTCAG+AGG | 0.556997 | 4_1:+2615038 | Msa0529220:CDS |
| CAATGAATTCAATGTGGCCA+CGG | 0.558304 | 4_1:-2615142 | None:intergenic |
| AGCATCATTGGCTGTCTGAA+GGG | 0.562358 | 4_1:-2615553 | None:intergenic |
| AGAAAGCATGAAAATGGAAG+TGG | 0.567606 | 4_1:+2615611 | Msa0529220:CDS |
| TTAGCATTCTCCTCGCAAGA+TGG | 0.577028 | 4_1:+2615360 | Msa0529220:CDS |
| ATATCGCATTGTATTTGCCG+TGG | 0.587379 | 4_1:+2615125 | Msa0529220:CDS |
| GGAAGAAAAGGTTGATGACA+TGG | 0.598747 | 4_1:+2615632 | Msa0529220:CDS |
| ATGATGCTGTACTGCCAACT+GGG | 0.600017 | 4_1:+2615568 | Msa0529220:CDS |
| GAAACTGTTGTAGATGGACG+TGG | 0.635945 | 4_1:+2617573 | Msa0529220:CDS |
| CTGTTACTGGAGCATAGTGA+AGG | 0.641031 | 4_1:-2615212 | None:intergenic |
| ACGAATCATCGACTTGATCG+GGG | 0.653419 | 4_1:-2614974 | None:intergenic |
| ACTGCACCAACACTCCCAGT+TGG | 0.657606 | 4_1:-2615582 | None:intergenic |
| CATGGACATAGAAGCATCTG+CGG | 0.658877 | 4_1:+2615650 | Msa0529220:CDS |
| AGAGCAGAAACCATCTTGCG+AGG | 0.660888 | 4_1:-2615370 | None:intergenic |
| AATGTACAATGAATTCAATG+TGG | 0.699967 | 4_1:-2615148 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATGATGTTTTTTTTTT+GGG | + | chr4_1:2615284-2615303 | Msa0529220:intron | 10.0% |
| !!! | ATTTTTTTGTATTCTTAAAA+AGG | - | chr4_1:2617434-2617453 | Msa0529230:three_prime_UTR | 10.0% |
| !!! | TTTTTAAGAATACAAAAAAA+TGG | + | chr4_1:2617433-2617452 | Msa0529220:intron | 10.0% |
| !!! | TTTTAAGAATACAAAAAAAT+GGG | + | chr4_1:2617434-2617453 | Msa0529220:intron | 10.0% |
| !!! | GAATTATGATGTTTTTTTTT+TGG | + | chr4_1:2615283-2615302 | Msa0529220:intron | 15.0% |
| !! | TTCTATTTATTCATGATATT+TGG | - | chr4_1:2616675-2616694 | None:intergenic | 15.0% |
| !! | ATTTATGAAGGATTATAATA+TGG | + | chr4_1:2616874-2616893 | Msa0529220:intron | 15.0% |
| !! | ACAATTTCAATTTATATATG+AGG | + | chr4_1:2617512-2617531 | Msa0529220:intron | 15.0% |
| !! | TTGTTTATCTATTGATATAG+TGG | + | chr4_1:2614924-2614943 | Msa0529220:five_prime_UTR | 20.0% |
| !!! | ACTTTAAAATAATGATTGGT+AGG | - | chr4_1:2615024-2615043 | None:intergenic | 20.0% |
| !!! | CAGAACTTTAAAATAATGAT+TGG | - | chr4_1:2615028-2615047 | None:intergenic | 20.0% |
| !! | ATTCAACGTAATAAATTGTA+TGG | - | chr4_1:2616636-2616655 | None:intergenic | 20.0% |
| !!! | ATAATGATTTTGTTAACTTC+TGG | + | chr4_1:2616986-2617005 | Msa0529220:intron | 20.0% |
| !! | TGAAATAATGCAAGTTTAAT+GGG | - | chr4_1:2617176-2617195 | None:intergenic | 20.0% |
| !! | TTGAAATAATGCAAGTTTAA+TGG | - | chr4_1:2617177-2617196 | None:intergenic | 20.0% |
| !! | TTCTTAAAAAGGTAATGTTT+GGG | - | chr4_1:2617423-2617442 | Msa0529230:three_prime_UTR | 20.0% |
| !! | ATTCTTAAAAAGGTAATGTT+TGG | - | chr4_1:2617424-2617443 | Msa0529230:three_prime_UTR | 20.0% |
| !!! | TGTTTTTGTTTATTGCAGAT+GGG | + | chr4_1:2615088-2615107 | Msa0529220:CDS | 25.0% |
| ! | AATGTACAATGAATTCAATG+TGG | - | chr4_1:2615151-2615170 | None:intergenic | 25.0% |
| ! | TTACCTGGTAAATGTTATAA+CGG | + | chr4_1:2615238-2615257 | Msa0529220:intron | 25.0% |
| !!! | TGATGTTTTTTTTTTGGGAA+AGG | + | chr4_1:2615289-2615308 | Msa0529220:intron | 25.0% |
| ! | AATCATAGCATGAAATGAAA+GGG | - | chr4_1:2615457-2615476 | None:intergenic | 25.0% |
| !!! | TTCTAGAACAATGTAGAAAA+GGG | - | chr4_1:2615505-2615524 | None:intergenic | 25.0% |
| ! | CAAAACTGTAATACAAGATA+AGG | + | chr4_1:2615701-2615720 | Msa0529220:intron | 25.0% |
| ! | AGAATATGTAAACCAAAACA+GGG | - | chr4_1:2616295-2616314 | None:intergenic | 25.0% |
| !!! | TCATTTTGAAGATTTCCTTT+TGG | + | chr4_1:2616364-2616383 | Msa0529220:intron | 25.0% |
| !! | TTTATGTTATGACTTTTGTG+AGG | + | chr4_1:2616489-2616508 | Msa0529220:intron | 25.0% |
| ! | GACATTTGCTTAATTTAACA+AGG | + | chr4_1:2616519-2616538 | Msa0529220:intron | 25.0% |
| !!! | ATGATCGTTTTGATTTATGA+AGG | + | chr4_1:2616862-2616881 | Msa0529220:intron | 25.0% |
| ! | ATATACAATGTAATCAAGTC+AGG | + | chr4_1:2617296-2617315 | Msa0529220:intron | 25.0% |
| !! | TCATCTATTTCTCTTTGTTA+TGG | + | chr4_1:2617357-2617376 | Msa0529220:intron | 25.0% |
| !!! | CTGTTTTTGTTTATTGCAGA+TGG | + | chr4_1:2615087-2615106 | Msa0529220:CDS | 30.0% |
| GAATCATAGCATGAAATGAA+AGG | - | chr4_1:2615458-2615477 | None:intergenic | 30.0% | |
| !! | CTTCTAGAACAATGTAGAAA+AGG | - | chr4_1:2615506-2615525 | None:intergenic | 30.0% |
| !! | TGTTCTAGAAGAAAATGTCT+TGG | + | chr4_1:2615515-2615534 | Msa0529220:intron | 30.0% |
| AGAACATAAAGCTGATGATA+TGG | + | chr4_1:2615794-2615813 | Msa0529220:intron | 30.0% | |
| TATGGTCATTGAAGAAGTTA+CGG | + | chr4_1:2615812-2615831 | Msa0529220:intron | 30.0% | |
| TATTAGGAAAAATGAAGCAG+AGG | + | chr4_1:2615839-2615858 | Msa0529220:intron | 30.0% | |
| AGATAAACCACAATCAACTT+CGG | + | chr4_1:2616058-2616077 | Msa0529220:intron | 30.0% | |
| AATCATGGATCAATTGCAAT+AGG | - | chr4_1:2616182-2616201 | None:intergenic | 30.0% | |
| CAGAATATGTAAACCAAAAC+AGG | - | chr4_1:2616296-2616315 | None:intergenic | 30.0% | |
| AAACCTATGACTAAAACAAG+AGG | - | chr4_1:2616391-2616410 | None:intergenic | 30.0% | |
| AAACTGTCATTGCCTTATAT+TGG | + | chr4_1:2616429-2616448 | Msa0529220:intron | 30.0% | |
| TTCTTTACTCAACAAAAGCA+TGG | - | chr4_1:2616583-2616602 | None:intergenic | 30.0% | |
| TTATATCCTCTACCATTCAA+GGG | - | chr4_1:2616711-2616730 | None:intergenic | 30.0% | |
| TAGAGGATATAAGGATGATT+TGG | + | chr4_1:2616719-2616738 | Msa0529220:intron | 30.0% | |
| ACATAATCAACCATCATAAG+CGG | - | chr4_1:2616925-2616944 | None:intergenic | 30.0% | |
| CATTATTTCAACAGTCTTTG+TGG | + | chr4_1:2617186-2617205 | Msa0529220:intron | 30.0% | |
| TCTTTATGTCGTAGACAATT+AGG | + | chr4_1:2617488-2617507 | Msa0529220:intron | 30.0% | |
| !! | AAACGAATCATCGACTTGAT+CGG | - | chr4_1:2614979-2614998 | None:intergenic | 35.0% |
| TCTCCAATAGCAATATTTGC+TGG | + | chr4_1:2615189-2615208 | Msa0529220:CDS | 35.0% | |
| TACCAGGTAATATCTGTTAC+TGG | - | chr4_1:2615228-2615247 | None:intergenic | 35.0% | |
| TAGCCGTTATAACATTTACC+AGG | - | chr4_1:2615244-2615263 | None:intergenic | 35.0% | |
| GTAGTCCGTATTTGTTCAAA+AGG | + | chr4_1:2615319-2615338 | Msa0529220:intron | 35.0% | |
| ! | GGTGACCTTTTGAACAAATA+CGG | - | chr4_1:2615327-2615346 | None:intergenic | 35.0% |
| !! | AATGCTAAATAATGGGCATC+AGG | - | chr4_1:2615348-2615367 | None:intergenic | 35.0% |
| CGAGGAGAATGCTAAATAAT+GGG | - | chr4_1:2615355-2615374 | None:intergenic | 35.0% | |
| TGCTTACTTGATAAGCAGTA+AGG | - | chr4_1:2615429-2615448 | None:intergenic | 35.0% | |
| ! | CTATGATTCTAACTTGTACC+AGG | + | chr4_1:2615469-2615488 | Msa0529220:intron | 35.0% |
| GAAAAGGGAAATCAAAAACC+TGG | - | chr4_1:2615490-2615509 | None:intergenic | 35.0% | |
| TCTAGAAGAAAATGTCTTGG+AGG | + | chr4_1:2615518-2615537 | Msa0529220:intron | 35.0% | |
| ! | TGTAGCAGAAAGCATGAAAA+TGG | + | chr4_1:2615605-2615624 | Msa0529220:CDS | 35.0% |
| ! | AGAAAGCATGAAAATGGAAG+TGG | + | chr4_1:2615611-2615630 | Msa0529220:CDS | 35.0% |
| GAAAATGGAAGTGGAAGAAA+AGG | + | chr4_1:2615620-2615639 | Msa0529220:CDS | 35.0% | |
| ACGTGATCATCAAATCAACT+GGG | + | chr4_1:2615730-2615749 | Msa0529220:intron | 35.0% | |
| ATCAAATCAACTGGGAATGT+TGG | + | chr4_1:2615738-2615757 | Msa0529220:intron | 35.0% | |
| GTGCAATTATAGCTGACAAT+AGG | + | chr4_1:2615760-2615779 | Msa0529220:intron | 35.0% | |
| AAGAAGTTACGGCAGATATT+AGG | + | chr4_1:2615823-2615842 | Msa0529220:intron | 35.0% | |
| ACAACTAGGACTGCAAATAT+TGG | + | chr4_1:2615888-2615907 | Msa0529220:intron | 35.0% | |
| !! | CGGTTTATTTTCTGTGTCTT+CGG | - | chr4_1:2615940-2615959 | None:intergenic | 35.0% |
| ACAGAAAATAAACCGCTTAG+TGG | + | chr4_1:2615945-2615964 | Msa0529220:intron | 35.0% | |
| AATAAACCGCTTAGTGGTTT+AGG | + | chr4_1:2615951-2615970 | Msa0529220:intron | 35.0% | |
| GGTTTAGGCAGTATTAATTC+TGG | + | chr4_1:2615966-2615985 | Msa0529220:intron | 35.0% | |
| ! | TCTCTGGCATTGAAAAATCA+TGG | - | chr4_1:2616197-2616216 | None:intergenic | 35.0% |
| ACTAAAACAAGAGGTCCAAA+AGG | - | chr4_1:2616382-2616401 | None:intergenic | 35.0% | |
| !! | AGTTTGCTAACTAGGAAAGT+TGG | - | chr4_1:2616414-2616433 | None:intergenic | 35.0% |
| CTTATATCCTCTACCATTCA+AGG | - | chr4_1:2616712-2616731 | None:intergenic | 35.0% | |
| CTTGAATGGTAGAGGATATA+AGG | + | chr4_1:2616710-2616729 | Msa0529220:intron | 35.0% | |
| !! | TAAGGATGATTTGGTGATTG+AGG | + | chr4_1:2616728-2616747 | Msa0529220:intron | 35.0% |
| !!! | CCATCATAAGCGGTTTTTTA+AGG | - | chr4_1:2616915-2616934 | None:intergenic | 35.0% |
| CCTTAAAAAACCGCTTATGA+TGG | + | chr4_1:2616912-2616931 | Msa0529220:intron | 35.0% | |
| TACAGTTTCCAGGACATAAA+TGG | + | chr4_1:2617074-2617093 | Msa0529220:intron | 35.0% | |
| GTCTTGAAAAACACCTGATA+AGG | - | chr4_1:2617136-2617155 | None:intergenic | 35.0% | |
| TTTCAACAGTCTTTGTGGAT+TGG | + | chr4_1:2617191-2617210 | Msa0529220:intron | 35.0% | |
| TGTATTAAGAACCGTAGACA+GGG | - | chr4_1:2617223-2617242 | None:intergenic | 35.0% | |
| TGAGGCACATTCACAAAATT+TGG | + | chr4_1:2617530-2617549 | Msa0529220:intron | 35.0% | |
| !! | AACGAATCATCGACTTGATC+GGG | - | chr4_1:2614978-2614997 | None:intergenic | 40.0% |
| TAAAGTTCTGCCTCTTTCAG+AGG | + | chr4_1:2615038-2615057 | Msa0529220:CDS | 40.0% | |
| CGGCAAATACAATGCGATAT+GGG | - | chr4_1:2615125-2615144 | None:intergenic | 40.0% | |
| ACGGCAAATACAATGCGATA+TGG | - | chr4_1:2615126-2615145 | None:intergenic | 40.0% | |
| ATATCGCATTGTATTTGCCG+TGG | + | chr4_1:2615125-2615144 | Msa0529220:CDS | 40.0% | |
| CAATGAATTCAATGTGGCCA+CGG | - | chr4_1:2615145-2615164 | None:intergenic | 40.0% | |
| AGGCCAGCAAATATTGCTAT+TGG | - | chr4_1:2615195-2615214 | None:intergenic | 40.0% | |
| CTCCAGTAACAGATATTACC+TGG | + | chr4_1:2615223-2615242 | Msa0529220:CDS | 40.0% | |
| GCGAGGAGAATGCTAAATAA+TGG | - | chr4_1:2615356-2615375 | None:intergenic | 40.0% | |
| GAGTTCGAAAATGACGAACT+TGG | + | chr4_1:2615399-2615418 | Msa0529220:CDS | 40.0% | |
| !! | GGAAGAAAAGGTTGATGACA+TGG | + | chr4_1:2615632-2615651 | Msa0529220:CDS | 40.0% |
| !! | ATAGAAGCATCTGCGGATAT+TGG | + | chr4_1:2615657-2615676 | Msa0529220:CDS | 40.0% |
| !! | TAGAAGCATCTGCGGATATT+GGG | + | chr4_1:2615658-2615677 | Msa0529220:CDS | 40.0% |
| GACGTGATCATCAAATCAAC+TGG | + | chr4_1:2615729-2615748 | Msa0529220:intron | 40.0% | |
| GAAAAATGAAGCAGAGGAGA+AGG | + | chr4_1:2615845-2615864 | Msa0529220:intron | 40.0% | |
| ACATGATCATCGAGACAACT+AGG | + | chr4_1:2615874-2615893 | Msa0529220:intron | 40.0% | |
| ATACTGCCTAAACCACTAAG+CGG | - | chr4_1:2615960-2615979 | None:intergenic | 40.0% | |
| AAACAACCAGCTAATCCAGA+TGG | + | chr4_1:2616008-2616027 | Msa0529220:intron | 40.0% | |
| !! | TGTTTACCATCTGGATTAGC+TGG | - | chr4_1:2616017-2616036 | None:intergenic | 40.0% |
| ! | GCTTCACTTTGTTTACCATC+TGG | - | chr4_1:2616026-2616045 | None:intergenic | 40.0% |
| ACAAAGTGAAGCAGAAGAGA+AGG | + | chr4_1:2616034-2616053 | Msa0529220:intron | 40.0% | |
| TTCGGACAGCATAAAATCTG+AGG | + | chr4_1:2616076-2616095 | Msa0529220:intron | 40.0% | |
| ACAAAAAAGATGTACACGGG+CGG | - | chr4_1:2616234-2616253 | None:intergenic | 40.0% | |
| CGCACAAAAAAGATGTACAC+GGG | - | chr4_1:2616237-2616256 | None:intergenic | 40.0% | |
| CCGCACAAAAAAGATGTACA+CGG | - | chr4_1:2616238-2616257 | None:intergenic | 40.0% | |
| !!! | CCGTGTACATCTTTTTTGTG+CGG | + | chr4_1:2616235-2616254 | Msa0529220:intron | 40.0% |
| !!! | GGACCTCTTGTTTTAGTCAT+AGG | + | chr4_1:2616385-2616404 | Msa0529220:intron | 40.0% |
| !! | GCAATGACAGTTTGCTAACT+AGG | - | chr4_1:2616422-2616441 | None:intergenic | 40.0% |
| TGTGCTGTCTTGCCAATATA+AGG | - | chr4_1:2616444-2616463 | None:intergenic | 40.0% | |
| TCATGCTAAGATCCCTTGAA+TGG | + | chr4_1:2616696-2616715 | Msa0529220:intron | 40.0% | |
| TAAGATCCCTTGAATGGTAG+AGG | + | chr4_1:2616702-2616721 | Msa0529220:intron | 40.0% | |
| !! | GATGATTTGGTGATTGAGGT+GGG | + | chr4_1:2616732-2616751 | Msa0529220:intron | 40.0% |
| TATGCAGTGGAGTGATAAGA+AGG | + | chr4_1:2616760-2616779 | Msa0529220:intron | 40.0% | |
| GTGATAAGAAGGTCGAGATT+CGG | + | chr4_1:2616771-2616790 | Msa0529220:intron | 40.0% | |
| TTGTGTGACCATTTATGTCC+TGG | - | chr4_1:2617085-2617104 | None:intergenic | 40.0% | |
| AAATGGTCACACAATCCTGA+TGG | + | chr4_1:2617091-2617110 | Msa0529220:intron | 40.0% | |
| ATAACCAAGGTCTCCTTATC+AGG | + | chr4_1:2617120-2617139 | Msa0529220:intron | 40.0% | |
| ATTGGTATCTACCCTGTCTA+CGG | + | chr4_1:2617209-2617228 | Msa0529220:intron | 40.0% | |
| CTGTATTAAGAACCGTAGAC+AGG | - | chr4_1:2617224-2617243 | None:intergenic | 40.0% | |
| TTGCAGGAAACTGTTGTAGA+TGG | + | chr4_1:2617567-2617586 | Msa0529220:intron | 40.0% | |
| !! | ACGAATCATCGACTTGATCG+GGG | - | chr4_1:2614977-2614996 | None:intergenic | 45.0% |
| ! | GACAATGCATCCTCTGAAAG+AGG | - | chr4_1:2615051-2615070 | None:intergenic | 45.0% |
| CTGTTACTGGAGCATAGTGA+AGG | - | chr4_1:2615215-2615234 | None:intergenic | 45.0% | |
| TTAGCATTCTCCTCGCAAGA+TGG | + | chr4_1:2615360-2615379 | Msa0529220:CDS | 45.0% | |
| GCAAGATGGTTTCTGCTCTT+TGG | + | chr4_1:2615374-2615393 | Msa0529220:CDS | 45.0% | |
| AGATGGTTTCTGCTCTTTGG+TGG | + | chr4_1:2615377-2615396 | Msa0529220:CDS | 45.0% | |
| ! | AGCATCATTGGCTGTCTGAA+GGG | - | chr4_1:2615556-2615575 | None:intergenic | 45.0% |
| AGTTGGCAGTACAGCATCAT+TGG | - | chr4_1:2615568-2615587 | None:intergenic | 45.0% | |
| AATGATGCTGTACTGCCAAC+TGG | + | chr4_1:2615567-2615586 | Msa0529220:CDS | 45.0% | |
| ATGATGCTGTACTGCCAACT+GGG | + | chr4_1:2615568-2615587 | Msa0529220:CDS | 45.0% | |
| !! | CATGGACATAGAAGCATCTG+CGG | + | chr4_1:2615650-2615669 | Msa0529220:CDS | 45.0% |
| !! | AGAAGCATCTGCGGATATTG+GGG | + | chr4_1:2615659-2615678 | Msa0529220:CDS | 45.0% |
| !! | TAATTCTGGAGCCGAAGAGA+AGG | + | chr4_1:2615980-2615999 | Msa0529220:intron | 45.0% |
| TTGTTTCGACGCCTTCTCTT+CGG | - | chr4_1:2615994-2616013 | None:intergenic | 45.0% | |
| ! | ATGCTGTCCGAAGTTGATTG+TGG | - | chr4_1:2616068-2616087 | None:intergenic | 45.0% |
| !! | CTGGCTGGCTTATTTGTGAT+GGG | - | chr4_1:2616146-2616165 | None:intergenic | 45.0% |
| AATAGGTGTAATGCGCTTCC+TGG | - | chr4_1:2616165-2616184 | None:intergenic | 45.0% | |
| AAAACAGGGAGCAACAAGAG+GGG | - | chr4_1:2616281-2616300 | None:intergenic | 45.0% | |
| CAAAACAGGGAGCAACAAGA+GGG | - | chr4_1:2616282-2616301 | None:intergenic | 45.0% | |
| !! | GGATGATTTGGTGATTGAGG+TGG | + | chr4_1:2616731-2616750 | Msa0529220:intron | 45.0% |
| GCAGAATTCCAGCATAGAAG+AGG | - | chr4_1:2617032-2617051 | None:intergenic | 45.0% | |
| TCCTGGAAACTGTAAGACAG+CGG | - | chr4_1:2617068-2617087 | None:intergenic | 45.0% | |
| CTTGGTTATACCTCACCATC+AGG | - | chr4_1:2617109-2617128 | None:intergenic | 45.0% | |
| ! | CTGATGGTGAGGTATAACCA+AGG | + | chr4_1:2617107-2617126 | Msa0529220:intron | 45.0% |
| AACACCTGATAAGGAGACCT+TGG | - | chr4_1:2617127-2617146 | None:intergenic | 45.0% | |
| GAAACTGTTGTAGATGGACG+TGG | + | chr4_1:2617573-2617592 | Msa0529220:CDS | 45.0% | |
| !! | ATCGACTTGATCGGGGTACA+AGG | - | chr4_1:2614970-2614989 | None:intergenic | 50.0% |
| AGAGCAGAAACCATCTTGCG+AGG | - | chr4_1:2615373-2615392 | None:intergenic | 50.0% | |
| ! | CAGCATCATTGGCTGTCTGA+AGG | - | chr4_1:2615557-2615576 | None:intergenic | 50.0% |
| ! | TCTGAGGCAGCACAAAAGAC+AGG | + | chr4_1:2616092-2616111 | Msa0529220:intron | 50.0% |
| CTGAGGCAGCACAAAAGACA+GGG | + | chr4_1:2616093-2616112 | Msa0529220:intron | 50.0% | |
| !! | CCTGGCTGGCTTATTTGTGA+TGG | - | chr4_1:2616147-2616166 | None:intergenic | 50.0% |
| CCATCACAAATAAGCCAGCC+AGG | + | chr4_1:2616144-2616163 | Msa0529220:intron | 50.0% | |
| GGACGTTAATGGAGCTTCTC+TGG | - | chr4_1:2616213-2616232 | None:intergenic | 50.0% | |
| ! | CAACAAGAGGGGGGATGTTT+TGG | - | chr4_1:2616270-2616289 | None:intergenic | 50.0% |
| AAACAGGGAGCAACAAGAGG+GGG | - | chr4_1:2616280-2616299 | None:intergenic | 50.0% | |
| CCAAAACAGGGAGCAACAAG+AGG | - | chr4_1:2616283-2616302 | None:intergenic | 50.0% | |
| ! | CCTCTTGTTGCTCCCTGTTT+TGG | + | chr4_1:2616280-2616299 | Msa0529220:intron | 50.0% |
| ! | TCGAGATTCGGTTCGCATTC+TGG | + | chr4_1:2616783-2616802 | Msa0529220:intron | 50.0% |
| GTGCTCATCCTCTTCTATGC+TGG | + | chr4_1:2617021-2617040 | Msa0529220:intron | 50.0% | |
| ACCGCTGTCTTACAGTTTCC+AGG | + | chr4_1:2617064-2617083 | Msa0529220:intron | 50.0% | |
| ! | GTCACACAATCCTGATGGTG+AGG | + | chr4_1:2617096-2617115 | Msa0529220:intron | 50.0% |
| !!! | GGTGCAGTTTTGAGTGTTGC+AGG | + | chr4_1:2617551-2617570 | Msa0529220:intron | 50.0% |
| ! | GTACTGCCAACTGGGAGTGT+TGG | + | chr4_1:2615576-2615595 | Msa0529220:CDS | 55.0% |
| ACTGCACCAACACTCCCAGT+TGG | - | chr4_1:2615585-2615604 | None:intergenic | 55.0% | |
| GATGGGCGTGCTCTTTGAAC+TGG | - | chr4_1:2616129-2616148 | None:intergenic | 55.0% | |
| TGTACACGGGCGGACGTTAA+TGG | - | chr4_1:2616224-2616243 | None:intergenic | 55.0% | |
| AACAGGGAGCAACAAGAGGG+GGG | - | chr4_1:2616279-2616298 | None:intergenic | 55.0% | |
| GGTGTAATGCGCTTCCTGGC+TGG | - | chr4_1:2616161-2616180 | None:intergenic | 60.0% | |
| GAGGTGGGAGAGCTATGCAG+TGG | + | chr4_1:2616747-2616766 | Msa0529220:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 2614876 | 2617605 | 2614876 | ID=Msa0529220;Name=Msa0529220 |
| chr4_1 | mRNA | 2614876 | 2617605 | 2614876 | ID=Msa0529220-mRNA-1;Parent=Msa0529220;Name=Msa0529220-mRNA-1;_AED=0.31;_eAED=0.31;_QI=112|0.66|0.5|0.75|1|1|4|0|191 |
| chr4_1 | exon | 2614876 | 2615244 | 2614876 | ID=Msa0529220-mRNA-1:exon:716;Parent=Msa0529220-mRNA-1 |
| chr4_1 | exon | 2615341 | 2615441 | 2615341 | ID=Msa0529220-mRNA-1:exon:717;Parent=Msa0529220-mRNA-1 |
| chr4_1 | exon | 2615523 | 2615707 | 2615523 | ID=Msa0529220-mRNA-1:exon:718;Parent=Msa0529220-mRNA-1 |
| chr4_1 | exon | 2617573 | 2617605 | 2617573 | ID=Msa0529220-mRNA-1:exon:719;Parent=Msa0529220-mRNA-1 |
| chr4_1 | five_prime_UTR | 2614876 | 2614987 | 2614876 | ID=Msa0529220-mRNA-1:five_prime_utr;Parent=Msa0529220-mRNA-1 |
| chr4_1 | CDS | 2614988 | 2615244 | 2614988 | ID=Msa0529220-mRNA-1:cds;Parent=Msa0529220-mRNA-1 |
| chr4_1 | CDS | 2615341 | 2615441 | 2615341 | ID=Msa0529220-mRNA-1:cds;Parent=Msa0529220-mRNA-1 |
| chr4_1 | CDS | 2615523 | 2615707 | 2615523 | ID=Msa0529220-mRNA-1:cds;Parent=Msa0529220-mRNA-1 |
| chr4_1 | CDS | 2617573 | 2617605 | 2617573 | ID=Msa0529220-mRNA-1:cds;Parent=Msa0529220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
