Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097260 | sp|Q94AI1|QWRF2_ARATH | 42.258 | 691 | 285 | 24 | 1 | 618 | 1 | 650 | 1.06e-123 | 383 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097260 | G7ICE7 | 95.024 | 623 | 28 | 2 | 1 | 622 | 1 | 621 | 0.0 | 1073 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0097260 | 0.831153 | 1.962144e-55 | -8.615850e-47 |
| Msa0018160 | Msa0097260 | 0.947932 | 2.560061e-106 | -8.615850e-47 |
| Msa0021500 | Msa0097260 | 0.819193 | 1.320677e-52 | -8.615850e-47 |
| Msa0025580 | Msa0097260 | 0.802305 | 5.975759e-49 | -8.615850e-47 |
| Msa0028420 | Msa0097260 | 0.813584 | 2.376713e-51 | -8.615850e-47 |
| Msa0034810 | Msa0097260 | 0.802222 | 6.215510e-49 | -8.615850e-47 |
| Msa0035140 | Msa0097260 | 0.807613 | 4.640510e-50 | -8.615850e-47 |
| Msa0036870 | Msa0097260 | 0.835395 | 1.720613e-56 | -8.615850e-47 |
| Msa0042610 | Msa0097260 | 0.803873 | 2.832243e-49 | -8.615850e-47 |
| Msa0052260 | Msa0097260 | 0.905133 | 5.922032e-80 | -8.615850e-47 |
| Msa0054690 | Msa0097260 | 0.832368 | 9.835639e-56 | -8.615850e-47 |
| Msa0071880 | Msa0097260 | 0.806078 | 9.793923e-50 | -8.615850e-47 |
| Msa0090400 | Msa0097260 | 0.831825 | 1.340019e-55 | -8.615850e-47 |
| Msa0097260 | Msa0117480 | 0.812682 | 3.748611e-51 | -8.615850e-47 |
| Msa0097260 | Msa0125550 | 0.800747 | 1.246667e-48 | -8.615850e-47 |
| Msa0097260 | Msa0137880 | 0.812428 | 4.261662e-51 | -8.615850e-47 |
| Msa0097260 | Msa0146040 | 0.914742 | 1.340783e-84 | -8.615850e-47 |
| Msa0097260 | Msa0174450 | 0.800010 | 1.761473e-48 | -8.615850e-47 |
| Msa0097260 | Msa0178560 | 0.826808 | 2.213965e-54 | -8.615850e-47 |
| Msa0097260 | Msa0180650 | 0.808276 | 3.353972e-50 | -8.615850e-47 |
| Msa0097260 | Msa0225860 | 0.842884 | 1.968032e-58 | -8.615850e-47 |
| Msa0097260 | Msa0267110 | 0.822615 | 2.154358e-53 | -8.615850e-47 |
| Msa0097260 | Msa0287740 | 0.805275 | 1.444402e-49 | -8.615850e-47 |
| Msa0097260 | Msa0298470 | 0.821819 | 3.296460e-53 | -8.615850e-47 |
| Msa0097260 | Msa0380620 | 0.806174 | 9.350269e-50 | -8.615850e-47 |
| Msa0097260 | Msa0419700 | 0.839770 | 1.299005e-57 | -8.615850e-47 |
| Msa0097260 | Msa0430260 | 0.800444 | 1.436890e-48 | -8.615850e-47 |
| Msa0097260 | Msa0430300 | 0.805518 | 1.284358e-49 | -8.615850e-47 |
| Msa0097260 | Msa0511750 | 0.817313 | 3.518471e-52 | -8.615850e-47 |
| Msa0097260 | Msa0529220 | 0.802264 | 6.093045e-49 | -8.615850e-47 |
| Msa0097260 | Msa0530780 | 0.823341 | 1.459220e-53 | -8.615850e-47 |
| Msa0097260 | Msa0548470 | 0.802019 | 6.841486e-49 | -8.615850e-47 |
| Msa0097260 | Msa0549370 | 0.807904 | 4.024464e-50 | -8.615850e-47 |
| Msa0097260 | Msa0580370 | 0.824593 | 7.420694e-54 | -8.615850e-47 |
| Msa0097260 | Msa0583830 | 0.800362 | 1.493804e-48 | -8.615850e-47 |
| Msa0097260 | Msa0584420 | 0.800437 | 1.441994e-48 | -8.615850e-47 |
| Msa0097260 | Msa0587620 | 0.803153 | 3.992589e-49 | -8.615850e-47 |
| Msa0097260 | Msa0600930 | 0.811523 | 6.707832e-51 | -8.615850e-47 |
| Msa0097260 | Msa0626450 | 0.807828 | 4.176235e-50 | -8.615850e-47 |
| Msa0097260 | Msa0626490 | 0.803538 | 3.323715e-49 | -8.615850e-47 |
| Msa0097260 | Msa0640200 | 0.804010 | 2.651569e-49 | -8.615850e-47 |
| Msa0097260 | Msa0658880 | 0.819688 | 1.018278e-52 | -8.615850e-47 |
| Msa0097260 | Msa0661150 | 0.841953 | 3.476180e-58 | -8.615850e-47 |
| Msa0097260 | Msa0664600 | 0.801245 | 9.863864e-49 | -8.615850e-47 |
| Msa0097260 | Msa0677410 | 0.801299 | 9.615167e-49 | -8.615850e-47 |
| Msa0097260 | Msa0689520 | 0.815553 | 8.717217e-52 | -8.615850e-47 |
| Msa0097260 | Msa0700460 | 0.807407 | 5.131864e-50 | -8.615850e-47 |
| Msa0097260 | Msa0704410 | 0.812821 | 3.494913e-51 | -8.615850e-47 |
| Msa0097260 | Msa0735780 | 0.807431 | 5.071297e-50 | -8.615850e-47 |
| Msa0097260 | Msa0761670 | 0.806246 | 9.029596e-50 | -8.615850e-47 |
| Msa0097260 | Msa0795870 | 0.820740 | 5.847609e-53 | -8.615850e-47 |
| Msa0097260 | Msa0829330 | 0.803190 | 3.923437e-49 | -8.615850e-47 |
| Msa0097260 | Msa0833650 | 0.824123 | 9.574316e-54 | -8.615850e-47 |
| Msa0097260 | Msa1042160 | 0.807776 | 4.285441e-50 | -8.615850e-47 |
| Msa0097260 | Msa1042190 | 0.805459 | 1.321531e-49 | -8.615850e-47 |
| Msa0097260 | Msa1045140 | 0.805699 | 1.176508e-49 | -8.615850e-47 |
| Msa0097260 | Msa1081390 | 0.806729 | 7.139522e-50 | -8.615850e-47 |
| Msa0097260 | Msa1090140 | 0.836370 | 9.736118e-57 | -8.615850e-47 |
| Msa0097260 | Msa1103990 | 0.803327 | 3.675860e-49 | -8.615850e-47 |
| Msa0097260 | Msa1105780 | 0.802204 | 6.269834e-49 | -8.615850e-47 |
| Msa0097260 | Msa1116220 | 0.813732 | 2.204886e-51 | -8.615850e-47 |
| Msa0097260 | Msa1132840 | 0.824202 | 9.169691e-54 | -8.615850e-47 |
| Msa0097260 | Msa1155830 | 0.804206 | 2.413896e-49 | -8.615850e-47 |
| Msa0097260 | Msa1161680 | 0.816302 | 5.932785e-52 | -8.615850e-47 |
| Msa0097260 | Msa1162590 | 0.801140 | 1.035962e-48 | -8.615850e-47 |
| Msa0097260 | Msa1177320 | 0.801414 | 9.105842e-49 | -8.615850e-47 |
| Msa0097260 | Msa1186020 | 0.812629 | 3.851599e-51 | -8.615850e-47 |
| Msa0097260 | Msa1204040 | 0.816407 | 5.619659e-52 | -8.615850e-47 |
| Msa0097260 | Msa1297230 | 0.822930 | 1.820078e-53 | -8.615850e-47 |
| Msa0097260 | Msa1298220 | 0.801140 | 1.036201e-48 | -8.615850e-47 |
| Msa0097260 | Msa1321340 | 0.830492 | 2.848789e-55 | -8.615850e-47 |
| Msa0097260 | Msa1343180 | 0.824089 | 9.750953e-54 | -8.615850e-47 |
| Msa0097260 | Msa1359690 | 0.820630 | 6.197424e-53 | -8.615850e-47 |
| Msa0097260 | Msa1372040 | 0.802405 | 5.699381e-49 | -8.615850e-47 |
| Msa0097260 | Msa1372230 | 0.830699 | 2.534833e-55 | -8.615850e-47 |
| Msa0097260 | Msa1390440 | 0.802345 | 5.864281e-49 | -8.615850e-47 |
| Msa0097260 | Msa1454140 | 0.814797 | 1.283263e-51 | -8.615850e-47 |
| Msa0097260 | Msa1464750 | 0.817036 | 4.060313e-52 | -8.615850e-47 |
| Msa0097260 | Msa1465440 | 0.824733 | 6.879401e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097260 | MtrunA17_Chr1g0152681 | 95.024 | 623 | 28 | 2 | 1 | 622 | 1 | 621 | 0.0 | 1073 |
| Msa0097260 | MtrunA17_Chr1g0207481 | 46.591 | 528 | 229 | 12 | 115 | 620 | 120 | 616 | 6.60e-121 | 372 |
| Msa0097260 | MtrunA17_Chr4g0073681 | 48.689 | 267 | 121 | 2 | 362 | 615 | 347 | 610 | 4.01e-63 | 219 |
| Msa0097260 | MtrunA17_Chr2g0291221 | 36.364 | 209 | 133 | 0 | 409 | 617 | 275 | 483 | 4.40e-40 | 153 |
| Msa0097260 | MtrunA17_Chr2g0323821 | 27.557 | 352 | 217 | 8 | 300 | 622 | 149 | 491 | 1.29e-26 | 114 |
| Msa0097260 | MtrunA17_Chr3g0079101 | 33.333 | 189 | 126 | 0 | 425 | 613 | 179 | 367 | 5.81e-25 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097260 | AT1G49890.1 | 42.258 | 691 | 285 | 24 | 1 | 618 | 1 | 650 | 1.08e-124 | 383 |
| Msa0097260 | AT3G19570.2 | 42.906 | 585 | 273 | 15 | 64 | 614 | 84 | 641 | 1.50e-118 | 367 |
| Msa0097260 | AT3G19570.1 | 43.110 | 566 | 261 | 15 | 64 | 595 | 84 | 622 | 2.52e-113 | 353 |
| Msa0097260 | AT3G19570.4 | 43.389 | 537 | 243 | 15 | 64 | 566 | 84 | 593 | 4.83e-104 | 328 |
| Msa0097260 | AT3G19570.3 | 43.389 | 537 | 243 | 15 | 64 | 566 | 84 | 593 | 4.83e-104 | 328 |
| Msa0097260 | AT4G30710.3 | 34.277 | 671 | 317 | 23 | 17 | 615 | 4 | 622 | 1.69e-73 | 248 |
| Msa0097260 | AT4G30710.1 | 34.277 | 671 | 317 | 23 | 17 | 615 | 4 | 622 | 1.69e-73 | 248 |
| Msa0097260 | AT4G30710.2 | 34.277 | 671 | 317 | 23 | 17 | 615 | 4 | 622 | 4.80e-73 | 247 |
| Msa0097260 | AT4G30710.4 | 34.242 | 660 | 310 | 23 | 17 | 604 | 4 | 611 | 3.83e-71 | 241 |
| Msa0097260 | AT5G43160.1 | 50.534 | 281 | 117 | 6 | 337 | 615 | 1 | 261 | 1.91e-65 | 216 |
| Msa0097260 | AT5G43160.2 | 50.534 | 281 | 117 | 6 | 337 | 615 | 1 | 261 | 1.91e-65 | 216 |
| Msa0097260 | AT2G24070.1 | 46.008 | 263 | 124 | 4 | 355 | 615 | 340 | 586 | 4.00e-59 | 209 |
| Msa0097260 | AT2G24070.3 | 46.008 | 263 | 124 | 4 | 355 | 615 | 340 | 586 | 4.00e-59 | 209 |
| Msa0097260 | AT2G24070.2 | 46.008 | 263 | 124 | 4 | 355 | 615 | 340 | 586 | 4.00e-59 | 209 |
| Msa0097260 | AT4G25190.1 | 34.031 | 191 | 126 | 0 | 423 | 613 | 198 | 388 | 1.10e-32 | 130 |
| Msa0097260 | AT4G25190.2 | 33.854 | 192 | 126 | 1 | 423 | 613 | 198 | 389 | 1.32e-31 | 127 |
| Msa0097260 | AT2G44190.1 | 33.761 | 234 | 145 | 3 | 387 | 616 | 238 | 465 | 8.10e-31 | 126 |
| Msa0097260 | AT3G60000.2 | 30.732 | 205 | 142 | 0 | 409 | 613 | 237 | 441 | 1.11e-26 | 114 |
| Msa0097260 | AT3G60000.1 | 31.638 | 177 | 119 | 1 | 423 | 599 | 251 | 425 | 9.93e-25 | 107 |
| Msa0097260 | AT2G20815.1 | 33.514 | 185 | 121 | 2 | 424 | 607 | 280 | 463 | 6.02e-22 | 100 |
| Msa0097260 | AT2G20815.4 | 33.514 | 185 | 121 | 2 | 424 | 607 | 203 | 386 | 1.43e-21 | 97.8 |
| Msa0097260 | AT2G20815.3 | 33.333 | 186 | 121 | 3 | 424 | 607 | 280 | 464 | 9.52e-21 | 96.3 |
| Msa0097260 | AT2G20815.2 | 33.333 | 186 | 121 | 3 | 424 | 607 | 251 | 435 | 1.27e-20 | 95.5 |
| Msa0097260 | AT5G43155.1 | 33.449 | 287 | 117 | 16 | 22 | 308 | 18 | 230 | 1.04e-13 | 71.6 |
Find 170 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACATCATTTGACAATTAA+AGG | 0.145886 | 1_3:+3054144 | None:intergenic |
| GAGTTTATCTGTTTCGTTTC+AGG | 0.150810 | 1_3:-3057950 | Msa0097260:CDS |
| CAATTTCATTGCTGACTTCT+AGG | 0.154009 | 1_3:+3054385 | None:intergenic |
| ACTCTCAACGTTAAATTTCT+AGG | 0.188233 | 1_3:-3058427 | Msa0097260:five_prime_UTR |
| GTTACTTCTGGTAGTTCTTC+TGG | 0.203202 | 1_3:-3057502 | Msa0097260:CDS |
| CGTGATTGTGATTGTGGTTT+TGG | 0.235117 | 1_3:+3058613 | None:intergenic |
| TTTGGACGATTGGGCTATTC+TGG | 0.237100 | 1_3:-3055798 | Msa0097260:CDS |
| GTCATTGCGGAATTCGTTAT+TGG | 0.251248 | 1_3:-3057632 | Msa0097260:CDS |
| CAACTGTAACTTTATTCTTT+TGG | 0.255507 | 1_3:+3056280 | None:intergenic |
| GTCTAACACGTATTTGTATA+TGG | 0.259365 | 1_3:-3054042 | Msa0097260:three_prime_UTR |
| AAACAGAAAATTCGATTTCT+AGG | 0.267547 | 1_3:-3057777 | Msa0097260:CDS |
| TTGAGAAATTCGAATGGATT+TGG | 0.285233 | 1_3:-3057670 | Msa0097260:CDS |
| TTTGACAATTAAAGGATATA+AGG | 0.294002 | 1_3:+3054152 | None:intergenic |
| AGGATCATACTTGCTCATTC+AGG | 0.314619 | 1_3:+3056228 | None:intergenic |
| ATAGGAGTGGTTAGTTAGTT+TGG | 0.314997 | 1_3:-3054300 | Msa0097260:three_prime_UTR |
| CATTGAGACTCCTACATAAC+AGG | 0.331265 | 1_3:-3057051 | Msa0097260:CDS |
| AACAGTTCCTCCGAAGCTTT+TGG | 0.334062 | 1_3:-3057359 | Msa0097260:CDS |
| TCTTCTGGAGTACAGGAGTT+TGG | 0.345008 | 1_3:-3057487 | Msa0097260:CDS |
| TTGTATCAGAAAAGCCTCTA+TGG | 0.346941 | 1_3:-3056344 | Msa0097260:intron |
| TCTTCGAGAAACGGTGGAAT+TGG | 0.348527 | 1_3:-3057391 | Msa0097260:CDS |
| TTATCAGAAGGAACAAGTTC+AGG | 0.354897 | 1_3:+3057532 | None:intergenic |
| TTTGTATACTATGCGATATC+AGG | 0.356364 | 1_3:+3054419 | None:intergenic |
| ACTCTTCCTCTTCCAATTGT+CGG | 0.357125 | 1_3:+3057817 | None:intergenic |
| AATCAATCAAGACCGTTTCA+TGG | 0.363348 | 1_3:+3054264 | None:intergenic |
| GATAATGAAAGTGTTACTTC+TGG | 0.379947 | 1_3:-3057514 | Msa0097260:CDS |
| GAAGTAACTTCTCGTGCTTT+CGG | 0.386297 | 1_3:+3058216 | None:intergenic |
| ATTCCACCGTTTCTCGAAGA+TGG | 0.387096 | 1_3:+3057394 | None:intergenic |
| ACGGTTACAACACCGACAAT+TGG | 0.406091 | 1_3:-3057829 | Msa0097260:CDS |
| GATGGCATCCCTAGCTTACT+TGG | 0.408280 | 1_3:+3057232 | None:intergenic |
| CTCTGCACCGTCGCTGGCGG+CGG | 0.409488 | 1_3:+3057892 | None:intergenic |
| AGTTTATCTGTTTCGTTTCA+GGG | 0.419782 | 1_3:-3057949 | Msa0097260:CDS |
| GGAATTTGTCGTTCTTCAAA+TGG | 0.420815 | 1_3:-3054210 | Msa0097260:three_prime_UTR |
| CTCAAACTCTGCACCGTCGC+TGG | 0.421458 | 1_3:+3057886 | None:intergenic |
| ATGATGTTAGCACCCCAAAA+AGG | 0.422613 | 1_3:+3054332 | None:intergenic |
| CTCTCAACGTTAAATTTCTA+GGG | 0.427128 | 1_3:-3058426 | Msa0097260:five_prime_UTR |
| ACCGTTGTTACCTTCTGAAT+CGG | 0.428192 | 1_3:-3058259 | Msa0097260:CDS |
| CTCAGTCGACGGAGCGGCAG+AGG | 0.428799 | 1_3:-3058044 | Msa0097260:CDS |
| GTGTACTCTGGTTCCCTCTC+AGG | 0.430024 | 1_3:-3055770 | Msa0097260:CDS |
| CAACGTTAAATTTCTAGGGT+TGG | 0.430343 | 1_3:-3058422 | Msa0097260:five_prime_UTR |
| GATGATCTATTTGGACGATT+GGG | 0.434467 | 1_3:-3055807 | Msa0097260:CDS |
| AGCTCGAGCGATTGTTGTTC+CGG | 0.438095 | 1_3:-3057443 | Msa0097260:CDS |
| GTCAATTATTAGAACTATGC+AGG | 0.444139 | 1_3:-3054584 | Msa0097260:intron |
| GGCGGTTTCGCTTTACTCAC+CGG | 0.446470 | 1_3:+3057910 | None:intergenic |
| GTTGTGATTTCGCCGGCCAC+CGG | 0.446740 | 1_3:+3057740 | None:intergenic |
| TGGTAGTTCTTCTGGAGTAC+AGG | 0.453379 | 1_3:-3057494 | Msa0097260:CDS |
| GGACGAACTGCAGAACGAAT+TGG | 0.453439 | 1_3:+3057262 | None:intergenic |
| AGATGATCTATTTGGACGAT+TGG | 0.458508 | 1_3:-3055808 | Msa0097260:CDS |
| CTTCGGTAACAGTAGGCATA+TGG | 0.462002 | 1_3:+3055486 | None:intergenic |
| TAAATTTCTAGGGTTGGTAA+TGG | 0.462631 | 1_3:-3058416 | Msa0097260:five_prime_UTR |
| CGATTGGGCTATTCTGGATC+GGG | 0.467610 | 1_3:-3055792 | Msa0097260:CDS |
| CAAGGTACTCCTCGGCCTAA+TGG | 0.468202 | 1_3:-3058015 | Msa0097260:CDS |
| CAGCGACGGTGCAGAGTTTG+AGG | 0.469732 | 1_3:-3057885 | Msa0097260:CDS |
| GAAAAGCCTCTATGGTGCTT+GGG | 0.470233 | 1_3:-3056336 | Msa0097260:CDS |
| GATAGATCTACTGAATTTGA+AGG | 0.470240 | 1_3:-3055554 | Msa0097260:CDS |
| TGACCGTTACGTTGTTATGA+AGG | 0.472669 | 1_3:+3058529 | None:intergenic |
| AGGAGCGACCGAAGCGCTAA+AGG | 0.473671 | 1_3:-3055750 | Msa0097260:CDS |
| AGAAAAGCCTCTATGGTGCT+TGG | 0.475511 | 1_3:-3056337 | Msa0097260:CDS |
| CCTGCTTCTCCAAGTAAGCT+AGG | 0.476087 | 1_3:-3057241 | Msa0097260:CDS |
| GCCGGAACCTTCCTCCTCTC+CGG | 0.476363 | 1_3:+3057853 | None:intergenic |
| GGTGCTGGCCTTTAGCGCTT+CGG | 0.477110 | 1_3:+3055742 | None:intergenic |
| TAATAATTGACAGAAGATCT+TGG | 0.482780 | 1_3:+3054596 | None:intergenic |
| TTCAGCAATGGATGTGATGC+AGG | 0.485132 | 1_3:-3055521 | Msa0097260:CDS |
| TCTGGAGTACAGGAGTTTGG+AGG | 0.486148 | 1_3:-3057484 | Msa0097260:CDS |
| AACAGGAAGACGTAGGGTGC+TGG | 0.490737 | 1_3:+3055727 | None:intergenic |
| ACGATTGGGCTATTCTGGAT+CGG | 0.494403 | 1_3:-3055793 | Msa0097260:CDS |
| TCAGAAAATGTTGTTTACTT+CGG | 0.495807 | 1_3:-3057977 | Msa0097260:CDS |
| GCAACCGGAGTCTCACCATT+AGG | 0.495895 | 1_3:+3058000 | None:intergenic |
| AAGGACTCACACCGCGCGAA+GGG | 0.498493 | 1_3:+3057200 | None:intergenic |
| CGACGGAGCGGCAGAGGCAA+CGG | 0.498632 | 1_3:-3058038 | Msa0097260:CDS |
| ACCGGAGAGGAGGAAGGTTC+CGG | 0.504389 | 1_3:-3057854 | Msa0097260:CDS |
| CAAGGACTCACACCGCGCGA+AGG | 0.509047 | 1_3:+3057199 | None:intergenic |
| TAGCAACACCGTTTCTTCCA+CGG | 0.514313 | 1_3:+3057176 | None:intergenic |
| AGTGGATCAGCACCGGTGGC+CGG | 0.514774 | 1_3:-3057752 | Msa0097260:CDS |
| CGCTTCGGTCGCTCCTGAGA+GGG | 0.515117 | 1_3:+3055757 | None:intergenic |
| ATTCTGGATCGGGTGTACTC+TGG | 0.516487 | 1_3:-3055782 | Msa0097260:CDS |
| CCTAGCTTACTTGGAGAAGC+AGG | 0.524697 | 1_3:+3057241 | None:intergenic |
| GGAGTACAGGAGTTTGGAGG+TGG | 0.529886 | 1_3:-3057481 | Msa0097260:CDS |
| AGCGAAACCGCCGCCAGCGA+CGG | 0.529951 | 1_3:-3057899 | Msa0097260:CDS |
| CGCGAAGGGGACCTCGGTGA+TGG | 0.530379 | 1_3:+3057214 | None:intergenic |
| ACGCAGCGTGATTGTGATTG+TGG | 0.532229 | 1_3:+3058607 | None:intergenic |
| GATTTGGAAGCAATGTGGTC+AGG | 0.535235 | 1_3:-3057654 | Msa0097260:CDS |
| TAATTTCATGAATAGAAGCT+TGG | 0.535304 | 1_3:-3057707 | Msa0097260:CDS |
| GGAGGCTATTTGTTCAGCAA+TGG | 0.537402 | 1_3:-3055533 | Msa0097260:CDS |
| AATTCAGTGTCTGCACAGAA+AGG | 0.541182 | 1_3:+3056987 | None:intergenic |
| GGATTGCAAAGTGTGAAGAT+TGG | 0.543770 | 1_3:-3054231 | Msa0097260:three_prime_UTR |
| GAGGAGGAAGGTTCCGGCGA+CGG | 0.543889 | 1_3:-3057848 | Msa0097260:CDS |
| GGTTGTAAATGTAAAGTCAC+TGG | 0.546346 | 1_3:-3054671 | Msa0097260:CDS |
| GCTGAATTCAATCCATGAAA+CGG | 0.546656 | 1_3:-3054276 | Msa0097260:three_prime_UTR |
| GTCGGTGTTGTAACCGTCGC+CGG | 0.547586 | 1_3:+3057835 | None:intergenic |
| ATTCAGTGTCTGCACAGAAA+GGG | 0.550651 | 1_3:+3056988 | None:intergenic |
| ATTGCATAAGCCTGTTATGT+AGG | 0.553385 | 1_3:+3057041 | None:intergenic |
| ATTCCTCGTGGAGACGATGC+AGG | 0.554378 | 1_3:+3057310 | None:intergenic |
| CTTGATTGATTAGCATAGTG+AGG | 0.554705 | 1_3:-3054252 | Msa0097260:three_prime_UTR |
| GGTAACAACGGTGGCCTCGT+TGG | 0.555549 | 1_3:+3058270 | None:intergenic |
| ACTAATCCATCTTCGAGAAA+CGG | 0.557716 | 1_3:-3057400 | Msa0097260:CDS |
| GCCTCTTGCAAGAACCTCGC+CGG | 0.564762 | 1_3:+3057424 | None:intergenic |
| ACCGACGGCGTAACTGTCAC+CGG | 0.564809 | 1_3:+3058075 | None:intergenic |
| TGATTCTGTTGTGATTTCGC+CGG | 0.565036 | 1_3:+3057733 | None:intergenic |
| TCCGGCGAGGTTCTTGCAAG+AGG | 0.567321 | 1_3:-3057425 | Msa0097260:CDS |
| TTCGGTATGAATTAATGAAG+AGG | 0.567974 | 1_3:+3058484 | None:intergenic |
| GCGCTTCGGTCGCTCCTGAG+AGG | 0.572968 | 1_3:+3055756 | None:intergenic |
| TATATACCTTCGGTAACAGT+AGG | 0.574204 | 1_3:+3055479 | None:intergenic |
| CTGCTTCTCCAAGTAAGCTA+GGG | 0.575742 | 1_3:-3057240 | Msa0097260:CDS |
| CGCGGTGTGAGTCCTTGCCG+TGG | 0.577170 | 1_3:-3057193 | Msa0097260:CDS |
| TTCGGCACCAAAAGCTTCGG+AGG | 0.579043 | 1_3:+3057352 | None:intergenic |
| TAACATCATAAGTATAACAT+AGG | 0.581440 | 1_3:-3054318 | Msa0097260:three_prime_UTR |
| GAAAAGAACTAACTCGCCAT+TGG | 0.584363 | 1_3:-3058139 | Msa0097260:CDS |
| AGTCCTTGCCGTGGAAGAAA+CGG | 0.584401 | 1_3:-3057184 | Msa0097260:CDS |
| ACCGAAAATGTGAAGGTGGA+AGG | 0.587881 | 1_3:+3058653 | None:intergenic |
| GACTGAGATCGTTTCACCGA+CGG | 0.589591 | 1_3:+3058060 | None:intergenic |
| GTAACACTTTCATTATCAGA+AGG | 0.591803 | 1_3:+3057520 | None:intergenic |
| GGAAAAGTACACCGGAGAGG+AGG | 0.592441 | 1_3:-3057864 | Msa0097260:CDS |
| TACATAACAGGCTTATGCAA+TGG | 0.595217 | 1_3:-3057039 | Msa0097260:CDS |
| TAGGCATATGGAGGATGCCA+TGG | 0.595245 | 1_3:+3055498 | None:intergenic |
| TTCACCGTTCTATTCACCAA+TGG | 0.595880 | 1_3:+3058123 | None:intergenic |
| AAATTCGATTTCTAGGTCAG+TGG | 0.597586 | 1_3:-3057770 | Msa0097260:CDS |
| ATTGCATTGTCCGATTCAGA+AGG | 0.598126 | 1_3:+3058249 | None:intergenic |
| CTAGGTCAGTGGATCAGCAC+CGG | 0.601366 | 1_3:-3057759 | Msa0097260:CDS |
| AGGACTCACACCGCGCGAAG+GGG | 0.602977 | 1_3:+3057201 | None:intergenic |
| TAGCTACCCAAGCACCATAG+AGG | 0.603348 | 1_3:+3056330 | None:intergenic |
| GGTCAGTGGATCAGCACCGG+TGG | 0.608767 | 1_3:-3057756 | Msa0097260:CDS |
| AAGTACACCGGAGAGGAGGA+AGG | 0.611409 | 1_3:-3057860 | Msa0097260:CDS |
| CTCGCCATTGGTGAATAGAA+CGG | 0.612901 | 1_3:-3058127 | Msa0097260:CDS |
| GGAGTCTCACCATTAGGCCG+AGG | 0.613090 | 1_3:+3058006 | None:intergenic |
| TCGGCCTAATGGTGAGACTC+CGG | 0.614526 | 1_3:-3058004 | Msa0097260:CDS |
| TCATACTTGCTCATTCAGGA+TGG | 0.615410 | 1_3:+3056232 | None:intergenic |
| GGGGAAAATTGGAGAGAACA+GGG | 0.616709 | 1_3:-3057089 | Msa0097260:CDS |
| ACACCGTTTCTTCCACGGCA+AGG | 0.617821 | 1_3:+3057181 | None:intergenic |
| GAGCGATTGTTGTTCCGGCG+AGG | 0.619427 | 1_3:-3057438 | Msa0097260:CDS |
| AAACTCTGCACCGTCGCTGG+CGG | 0.621343 | 1_3:+3057889 | None:intergenic |
| ACACCGCGCGAAGGGGACCT+CGG | 0.621540 | 1_3:+3057208 | None:intergenic |
| ACAACACCGACAATTGGAAG+AGG | 0.623276 | 1_3:-3057823 | Msa0097260:CDS |
| AAATGTGAAGGTGGAAGGTG+AGG | 0.630135 | 1_3:+3058658 | None:intergenic |
| ACGGCAAAACTCAAAACAGA+AGG | 0.630720 | 1_3:+3057124 | None:intergenic |
| AATGGATGTGATGCAGGCCA+TGG | 0.630875 | 1_3:-3055515 | Msa0097260:CDS |
| CGATTATTCAAAATTCCTCG+TGG | 0.631530 | 1_3:+3057298 | None:intergenic |
| ATCGCTCGAGCTGATCGTTG+CGG | 0.631817 | 1_3:+3057454 | None:intergenic |
| GGCAACGGCAAGGTACTCCT+CGG | 0.635107 | 1_3:-3058023 | Msa0097260:CDS |
| TGTGCAGACACTGAATTCTG+AGG | 0.635950 | 1_3:-3056981 | Msa0097260:intron |
| ATTGGAAGAGGAAGAGTGAA+CGG | 0.637041 | 1_3:-3057811 | Msa0097260:CDS |
| TAACACCGAAAATGTGAAGG+TGG | 0.640209 | 1_3:+3058649 | None:intergenic |
| GCCGGTGACAGTTACGCCGT+CGG | 0.640758 | 1_3:-3058076 | Msa0097260:CDS |
| TCACCGAGGTCCCCTTCGCG+CGG | 0.643495 | 1_3:-3057211 | Msa0097260:CDS |
| CGGTAACAGTAGGCATATGG+AGG | 0.643850 | 1_3:+3055489 | None:intergenic |
| AGTTAACACCGAAAATGTGA+AGG | 0.644252 | 1_3:+3058646 | None:intergenic |
| AGTTGTCAGCATAAGTGCAA+AGG | 0.647548 | 1_3:-3054641 | Msa0097260:CDS |
| AGATCTACTGAATTTGAAGG+AGG | 0.651994 | 1_3:-3055551 | Msa0097260:CDS |
| GAGCGGCAGAGGCAACGGCA+AGG | 0.654833 | 1_3:-3058033 | Msa0097260:CDS |
| AATCCATCTTCGAGAAACGG+TGG | 0.655723 | 1_3:-3057397 | Msa0097260:CDS |
| GCAATGTGGTCAGGTCATTG+CGG | 0.662490 | 1_3:-3057645 | Msa0097260:CDS |
| ATGAATAGAAGCTTGGATTG+TGG | 0.664306 | 1_3:-3057700 | Msa0097260:CDS |
| GAGTTTGAGGAAAAGTACAC+CGG | 0.667037 | 1_3:-3057872 | Msa0097260:CDS |
| CATATGCCTACTGTTACCGA+AGG | 0.667961 | 1_3:-3055485 | Msa0097260:intron |
| ACACCTTCATAACAACGTAA+CGG | 0.669634 | 1_3:-3058532 | Msa0097260:five_prime_UTR |
| AACGATCTCAGTCGACGGAG+CGG | 0.670815 | 1_3:-3058050 | Msa0097260:CDS |
| AAATGTTGTTTACTTCGGCG+AGG | 0.676953 | 1_3:-3057972 | Msa0097260:CDS |
| GATCCTCGAGTTTCTCACGA+TGG | 0.678747 | 1_3:-3057610 | Msa0097260:CDS |
| GGTGAAACGATCTCAGTCGA+CGG | 0.679372 | 1_3:-3058055 | Msa0097260:CDS |
| TCCGATTCAGAAGGTAACAA+CGG | 0.679861 | 1_3:+3058258 | None:intergenic |
| GAATGGATTTGGAAGCAATG+TGG | 0.688136 | 1_3:-3057659 | Msa0097260:CDS |
| TGAGGAAAAGTACACCGGAG+AGG | 0.704881 | 1_3:-3057867 | Msa0097260:CDS |
| GCACCATCGTGAGAAACTCG+AGG | 0.706819 | 1_3:+3057607 | None:intergenic |
| TCATAAGTATAACATAGGAG+TGG | 0.708231 | 1_3:-3054313 | Msa0097260:three_prime_UTR |
| TTGCCGTTGATGTTCCAAGG+GGG | 0.732369 | 1_3:-3057108 | Msa0097260:CDS |
| AGTCCTGCATCGTCTCCACG+AGG | 0.738290 | 1_3:-3057313 | Msa0097260:CDS |
| TTTGCCGTTGATGTTCCAAG+GGG | 0.738628 | 1_3:-3057109 | Msa0097260:CDS |
| GAGACAGAAATTGACGACGC+CGG | 0.740637 | 1_3:-3058094 | Msa0097260:CDS |
| AGCTAGGGATGCCATCACCG+AGG | 0.744783 | 1_3:-3057225 | Msa0097260:CDS |
| GATTCAGAAGGTAACAACGG+TGG | 0.747196 | 1_3:+3058261 | None:intergenic |
| AGAGAGCATCAACACCAACG+AGG | 0.758781 | 1_3:-3058284 | Msa0097260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTATTAT+TGG | - | chr1_3:3057847-3057866 | Msa0097260:CDS | 0.0% |
| !!! | TTTTTTTTTTTTTTATTATT+GGG | - | chr1_3:3057848-3057867 | Msa0097260:CDS | 0.0% |
| !!! | ATTTTTGAAAGAAAAAAAAA+TGG | - | chr1_3:3054287-3054306 | Msa0097260:three_prime_UTR | 10.0% |
| !!! | TTTATTTATTTTTTGCTATT+TGG | - | chr1_3:3055853-3055872 | Msa0097260:intron | 10.0% |
| !!! | TCTTTTTCAAATTTCAAATT+TGG | - | chr1_3:3055682-3055701 | Msa0097260:intron | 15.0% |
| !! | AAAAAAAATCAAGAAGATTA+CGG | + | chr1_3:3057824-3057843 | None:intergenic | 15.0% |
| !!! | TTGATAAAATTCGTTTTTAT+TGG | - | chr1_3:3058174-3058193 | Msa0097260:CDS | 15.0% |
| !!! | TACATGTTAATTGATTTTTT+TGG | - | chr1_3:3058530-3058549 | Msa0097260:five_prime_UTR | 15.0% |
| !!! | TTTTTTTGGTTGTATTTATT+AGG | - | chr1_3:3058544-3058563 | Msa0097260:five_prime_UTR | 15.0% |
| !! | TTATGCTATTAATATTCTAC+TGG | - | chr1_3:3055894-3055913 | Msa0097260:intron | 20.0% |
| !! | AAATAATGTCAACAATATCA+AGG | + | chr1_3:3056026-3056045 | None:intergenic | 20.0% |
| !!! | GTTGACATTATTTAAAACTT+TGG | - | chr1_3:3056033-3056052 | Msa0097260:intron | 20.0% |
| !!! | ATATGTTTTGTTTTCCATTT+TGG | - | chr1_3:3056213-3056232 | Msa0097260:intron | 20.0% |
| !! | TGACACAAATATCTAAATAA+TGG | + | chr1_3:3056498-3056517 | None:intergenic | 20.0% |
| !! | TAAGAAATAAAGCAATAAAC+AGG | + | chr1_3:3056965-3056984 | None:intergenic | 20.0% |
| !!! | AGTTTTAATGGTTCATATAT+AGG | - | chr1_3:3057379-3057398 | Msa0097260:CDS | 20.0% |
| !!! | TCTTAAAATATTTTCTGTGA+TGG | + | chr1_3:3057543-3057562 | None:intergenic | 20.0% |
| !! | TAAGTTATCAAACAAATCAT+TGG | - | chr1_3:3057567-3057586 | Msa0097260:CDS | 20.0% |
| !!! | TAGGGTTTTATAATATGTTA+AGG | + | chr1_3:3057677-3057696 | None:intergenic | 20.0% |
| !! | TTACATTTACAACCTATAAA+TGG | + | chr1_3:3057956-3057975 | None:intergenic | 20.0% |
| !! | TAACATCATAAGTATAACAT+AGG | - | chr1_3:3058315-3058334 | Msa0097260:CDS | 20.0% |
| !! | TTTGACAATTAAAGGATATA+AGG | + | chr1_3:3058484-3058503 | None:intergenic | 20.0% |
| !! | ATACATCATTTGACAATTAA+AGG | + | chr1_3:3058492-3058511 | None:intergenic | 20.0% |
| !!! | CCAAGTTGTATATTTTTATA+CGG | - | chr1_3:3058662-3058681 | Msa0097260:five_prime_UTR | 20.0% |
| !! | TCAGAAAATGTTGTTTACTT+CGG | - | chr1_3:3054656-3054675 | Msa0097260:CDS | 25.0% |
| ! | AAACAGAAAATTCGATTTCT+AGG | - | chr1_3:3054856-3054875 | Msa0097260:intron | 25.0% |
| ! | TAATTTCATGAATAGAAGCT+TGG | - | chr1_3:3054926-3054945 | Msa0097260:intron | 25.0% |
| ! | TTATTAATGTTGTGATTGCT+TGG | - | chr1_3:3055725-3055744 | Msa0097260:CDS | 25.0% |
| ! | TATTAATGTTGTGATTGCTT+GGG | - | chr1_3:3055726-3055745 | Msa0097260:CDS | 25.0% |
| !!! | ACTCTTTGAAGTTGTATTTA+AGG | - | chr1_3:3055927-3055946 | Msa0097260:intron | 25.0% |
| !! | ATTTAAAACTTTGGCTGTAT+TGG | - | chr1_3:3056042-3056061 | Msa0097260:intron | 25.0% |
| !! | TTTAAAACTTTGGCTGTATT+GGG | - | chr1_3:3056043-3056062 | Msa0097260:intron | 25.0% |
| ! | CTCAGTCAAAAAGATAAAAA+AGG | + | chr1_3:3056136-3056155 | None:intergenic | 25.0% |
| ! | GTGAAGATCAATTCATATAT+AGG | - | chr1_3:3056168-3056187 | Msa0097260:intron | 25.0% |
| ! | CTGATACAAGAAAGAATATT+AGG | + | chr1_3:3056278-3056297 | None:intergenic | 25.0% |
| !! | CAACTGTAACTTTATTCTTT+TGG | + | chr1_3:3056356-3056375 | None:intergenic | 25.0% |
| !! | AGGATAGTATGTATACATTT+TGG | + | chr1_3:3056688-3056707 | None:intergenic | 25.0% |
| ! | AGCATGTATGAAAAAAGAAA+AGG | + | chr1_3:3056708-3056727 | None:intergenic | 25.0% |
| !! | TTTTACTCAGATGATCTATT+TGG | - | chr1_3:3056817-3056836 | Msa0097260:intron | 25.0% |
| ! | AAGAGAAAAGAAAAATACCT+TGG | + | chr1_3:3056942-3056961 | None:intergenic | 25.0% |
| ! | TATTAGCTATTAGCATATCT+GGG | - | chr1_3:3057025-3057044 | Msa0097260:CDS | 25.0% |
| !!! | TAAAAGCACAGAAGTTTTAA+TGG | - | chr1_3:3057367-3057386 | Msa0097260:CDS | 25.0% |
| !! | AAAATATTTTCTGTGATGGT+GGG | + | chr1_3:3057539-3057558 | None:intergenic | 25.0% |
| !! | TAAAATATTTTCTGTGATGG+TGG | + | chr1_3:3057540-3057559 | None:intergenic | 25.0% |
| ! | TACACCACATATTTATTTAG+AGG | - | chr1_3:3057780-3057799 | Msa0097260:CDS | 25.0% |
| ! | TAATAATTGACAGAAGATCT+TGG | + | chr1_3:3058040-3058059 | None:intergenic | 25.0% |
| !!! | ATGCAGGTAAGTTTTATATT+CGG | - | chr1_3:3058065-3058084 | Msa0097260:CDS | 25.0% |
| !!! | TAAAATTCGTTTTTATTGGC+AGG | - | chr1_3:3058178-3058197 | Msa0097260:CDS | 25.0% |
| !!! | TAACTTTTTCATGTAACTGA+GGG | + | chr1_3:3058642-3058661 | None:intergenic | 25.0% |
| ! | CCGTATAAAAATATACAACT+TGG | + | chr1_3:3058665-3058684 | None:intergenic | 25.0% |
| !!! | TGTATATTTTTATACGGTGT+AGG | - | chr1_3:3058668-3058687 | Msa0097260:five_prime_UTR | 25.0% |
| TTCGGTATGAATTAATGAAG+AGG | + | chr1_3:3054152-3054171 | None:intergenic | 30.0% | |
| ACTCTCAACGTTAAATTTCT+AGG | - | chr1_3:3054206-3054225 | Msa0097260:three_prime_UTR | 30.0% | |
| CTCTCAACGTTAAATTTCTA+GGG | - | chr1_3:3054207-3054226 | Msa0097260:three_prime_UTR | 30.0% | |
| !! | TAAATTTCTAGGGTTGGTAA+TGG | - | chr1_3:3054217-3054236 | Msa0097260:three_prime_UTR | 30.0% |
| AGTTTATCTGTTTCGTTTCA+GGG | - | chr1_3:3054684-3054703 | Msa0097260:intron | 30.0% | |
| !! | GTTTTGTTGAGAAATTCGAA+TGG | - | chr1_3:3054957-3054976 | Msa0097260:intron | 30.0% |
| ! | TTGAGAAATTCGAATGGATT+TGG | - | chr1_3:3054963-3054982 | Msa0097260:intron | 30.0% |
| AGATCAGAAAGCAACAAAAA+TGG | - | chr1_3:3055056-3055075 | Msa0097260:intron | 30.0% | |
| GTAACACTTTCATTATCAGA+AGG | + | chr1_3:3055116-3055135 | None:intergenic | 30.0% | |
| !! | GATAATGAAAGTGTTACTTC+TGG | - | chr1_3:3055119-3055138 | Msa0097260:intron | 30.0% |
| !!! | CTATCGAACACTGATTTTTT+CGG | + | chr1_3:3055302-3055321 | None:intergenic | 30.0% |
| ! | CACGAGGAATTTTGAATAAT+CGG | - | chr1_3:3055336-3055355 | Msa0097260:intron | 30.0% |
| ! | ATTTTGAATAATCGGTTGCA+AGG | - | chr1_3:3055344-3055363 | Msa0097260:intron | 30.0% |
| AGAAATGTTCTCAGCTAAAA+TGG | + | chr1_3:3055830-3055849 | None:intergenic | 30.0% | |
| TTGTCCATTTGTATCATTAC+TGG | - | chr1_3:3056582-3056601 | Msa0097260:intron | 30.0% | |
| TGTCCATTTGTATCATTACT+GGG | - | chr1_3:3056583-3056602 | Msa0097260:intron | 30.0% | |
| !!! | TCTTTTTTCATACATGCTTG+AGG | - | chr1_3:3056710-3056729 | Msa0097260:intron | 30.0% |
| TTTACTTGCAGTTGTAGATA+AGG | - | chr1_3:3056735-3056754 | Msa0097260:intron | 30.0% | |
| AGTTGTAGATAAGGTGAATA+TGG | - | chr1_3:3056744-3056763 | Msa0097260:intron | 30.0% | |
| CTATTAGCTATTAGCATATC+TGG | - | chr1_3:3057024-3057043 | Msa0097260:CDS | 30.0% | |
| ATTAGCTATTAGCATATCTG+GGG | - | chr1_3:3057026-3057045 | Msa0097260:CDS | 30.0% | |
| GATAGATCTACTGAATTTGA+AGG | - | chr1_3:3057079-3057098 | Msa0097260:CDS | 30.0% | |
| GCAAAAGGATTATATACCTT+CGG | + | chr1_3:3057167-3057186 | None:intergenic | 30.0% | |
| TTATATTTGTGACGAAGTGA+TGG | - | chr1_3:3057217-3057236 | Msa0097260:CDS | 30.0% | |
| TTCAAAGACTATTGAAAAGC+TGG | + | chr1_3:3057263-3057282 | None:intergenic | 30.0% | |
| AATCATTGGTGTGATACAAA+AGG | - | chr1_3:3057581-3057600 | Msa0097260:CDS | 30.0% | |
| AGCTGTGTTAAGTATAGTTT+CGG | + | chr1_3:3057715-3057734 | None:intergenic | 30.0% | |
| ACCACATATTTATTTAGAGG+TGG | - | chr1_3:3057783-3057802 | Msa0097260:CDS | 30.0% | |
| ACCACCTCTAAATAAATATG+TGG | + | chr1_3:3057787-3057806 | None:intergenic | 30.0% | |
| ! | TTTTATGGATAACCAGCATT+TGG | - | chr1_3:3057887-3057906 | Msa0097260:CDS | 30.0% |
| TTTATGGATAACCAGCATTT+GGG | - | chr1_3:3057888-3057907 | Msa0097260:CDS | 30.0% | |
| !! | TGAAAGCATTCTCCATTTAT+AGG | - | chr1_3:3057941-3057960 | Msa0097260:CDS | 30.0% |
| GTCAATTATTAGAACTATGC+AGG | - | chr1_3:3058049-3058068 | Msa0097260:CDS | 30.0% | |
| !! | TGCAGGTAAGTTTTATATTC+GGG | - | chr1_3:3058066-3058085 | Msa0097260:CDS | 30.0% |
| GTACTTGTCTTGAATTTCAT+TGG | - | chr1_3:3058111-3058130 | Msa0097260:CDS | 30.0% | |
| TTCATTGGATGATATTGTTG+TGG | - | chr1_3:3058126-3058145 | Msa0097260:CDS | 30.0% | |
| TTTGTATACTATGCGATATC+AGG | + | chr1_3:3058217-3058236 | None:intergenic | 30.0% | |
| TCATAAGTATAACATAGGAG+TGG | - | chr1_3:3058320-3058339 | Msa0097260:CDS | 30.0% | |
| GTCTAACACGTATTTGTATA+TGG | - | chr1_3:3058591-3058610 | Msa0097260:five_prime_UTR | 30.0% | |
| !!! | AACTTTTTCATGTAACTGAG+GGG | + | chr1_3:3058641-3058660 | None:intergenic | 30.0% |
| !!! | GTAACTTTTTCATGTAACTG+AGG | + | chr1_3:3058643-3058662 | None:intergenic | 30.0% |
| AGTTAACACCGAAAATGTGA+AGG | + | chr1_3:3053990-3054009 | None:intergenic | 35.0% | |
| !!! | GTGATTGTGGTTTTGGATTT+GGG | + | chr1_3:3054016-3054035 | None:intergenic | 35.0% |
| !!! | TGTGATTGTGGTTTTGGATT+TGG | + | chr1_3:3054017-3054036 | None:intergenic | 35.0% |
| ACACCTTCATAACAACGTAA+CGG | - | chr1_3:3054101-3054120 | Msa0097260:three_prime_UTR | 35.0% | |
| !!! | AATTGCGAGCGTGATTTTTT+CGG | + | chr1_3:3054170-3054189 | None:intergenic | 35.0% |
| !! | CAACGTTAAATTTCTAGGGT+TGG | - | chr1_3:3054211-3054230 | Msa0097260:three_prime_UTR | 35.0% |
| !! | AATGGCGAGTTAGTTCTTTT+CGG | + | chr1_3:3054495-3054514 | None:intergenic | 35.0% |
| ! | AACAACATTTTCTGAGCAAC+CGG | + | chr1_3:3054651-3054670 | None:intergenic | 35.0% |
| GAGTTTATCTGTTTCGTTTC+AGG | - | chr1_3:3054683-3054702 | Msa0097260:intron | 35.0% | |
| ! | AAATTCGATTTCTAGGTCAG+TGG | - | chr1_3:3054863-3054882 | Msa0097260:intron | 35.0% |
| ATGAATAGAAGCTTGGATTG+TGG | - | chr1_3:3054933-3054952 | Msa0097260:intron | 35.0% | |
| TCAGAAAGCAACAAAAATGG+TGG | - | chr1_3:3055059-3055078 | Msa0097260:intron | 35.0% | |
| TTATCAGAAGGAACAAGTTC+AGG | + | chr1_3:3055104-3055123 | None:intergenic | 35.0% | |
| ACTAATCCATCTTCGAGAAA+CGG | - | chr1_3:3055233-3055252 | Msa0097260:intron | 35.0% | |
| CGATTATTCAAAATTCCTCG+TGG | + | chr1_3:3055338-3055357 | None:intergenic | 35.0% | |
| ATTGCATAAGCCTGTTATGT+AGG | + | chr1_3:3055595-3055614 | None:intergenic | 35.0% | |
| TACATAACAGGCTTATGCAA+TGG | - | chr1_3:3055594-3055613 | Msa0097260:intron | 35.0% | |
| ! | ATTTTGTGTTGAGTTTCGTG+TGG | - | chr1_3:3055761-3055780 | Msa0097260:CDS | 35.0% |
| ! | GTGGATTGTATGGATGTTAA+TGG | - | chr1_3:3055780-3055799 | Msa0097260:CDS | 35.0% |
| TGTCAACAATATCAAGGACA+AGG | + | chr1_3:3056020-3056039 | None:intergenic | 35.0% | |
| !!! | TGTTTTCCATTTTGGTTGTC+TGG | - | chr1_3:3056221-3056240 | Msa0097260:intron | 35.0% |
| TTGTATCAGAAAAGCCTCTA+TGG | - | chr1_3:3056289-3056308 | Msa0097260:CDS | 35.0% | |
| AAATTCAGCACATGTAGCTA+AGG | + | chr1_3:3056428-3056447 | None:intergenic | 35.0% | |
| GAATGATTGTTGCTCTATGA+AGG | + | chr1_3:3056527-3056546 | None:intergenic | 35.0% | |
| ATAGAGCAACAATCATTCCA+TGG | - | chr1_3:3056529-3056548 | Msa0097260:intron | 35.0% | |
| AACAATCATTCCATGGCATT+TGG | - | chr1_3:3056536-3056555 | Msa0097260:intron | 35.0% | |
| !! | ATTAGCTTTGCTCATTTGTG+CGG | - | chr1_3:3056609-3056628 | Msa0097260:intron | 35.0% |
| AGATGATCTATTTGGACGAT+TGG | - | chr1_3:3056825-3056844 | Msa0097260:intron | 35.0% | |
| GATGATCTATTTGGACGATT+GGG | - | chr1_3:3056826-3056845 | Msa0097260:intron | 35.0% | |
| CTATCTGTAGCAAAATACAG+TGG | + | chr1_3:3057064-3057083 | None:intergenic | 35.0% | |
| AGATCTACTGAATTTGAAGG+AGG | - | chr1_3:3057082-3057101 | Msa0097260:CDS | 35.0% | |
| TATATACCTTCGGTAACAGT+AGG | + | chr1_3:3057157-3057176 | None:intergenic | 35.0% | |
| CAACATTCATTATGGCAGTA+TGG | + | chr1_3:3057189-3057208 | None:intergenic | 35.0% | |
| CATACTGCCATAATGAATGT+TGG | - | chr1_3:3057187-3057206 | Msa0097260:CDS | 35.0% | |
| TCGAGATCCAACATTCATTA+TGG | + | chr1_3:3057197-3057216 | None:intergenic | 35.0% | |
| !! | CAATAGTCTTTGAAATTCCC+AGG | - | chr1_3:3057269-3057288 | Msa0097260:CDS | 35.0% |
| TTGTGGTAGAAAATCAACTG+AGG | - | chr1_3:3057303-3057322 | Msa0097260:CDS | 35.0% | |
| !!! | GCTTTTATTTTCTGCTTGCT+TGG | + | chr1_3:3057354-3057373 | None:intergenic | 35.0% |
| GAAGACAAGAGAATTTGAAG+TGG | + | chr1_3:3057492-3057511 | None:intergenic | 35.0% | |
| AATTCTCTTGTCTTCTGTAC+TGG | - | chr1_3:3057497-3057516 | Msa0097260:CDS | 35.0% | |
| TGCAATTCTTAGTAGATGAC+AGG | + | chr1_3:3057613-3057632 | None:intergenic | 35.0% | |
| ! | CGGATGAATCTAAAAGCATA+GGG | + | chr1_3:3057695-3057714 | None:intergenic | 35.0% |
| ! | TCGGATGAATCTAAAAGCAT+AGG | + | chr1_3:3057696-3057715 | None:intergenic | 35.0% |
| ! | TTTGGGATTTCAAACTTAGC+AGG | - | chr1_3:3057749-3057768 | Msa0097260:CDS | 35.0% |
| TTGGGATTTCAAACTTAGCA+GGG | - | chr1_3:3057750-3057769 | Msa0097260:CDS | 35.0% | |
| AATTGCTAAATCCCAAATGC+TGG | + | chr1_3:3057902-3057921 | None:intergenic | 35.0% | |
| ! | AGCATTTGGGATTTAGCAAT+TGG | - | chr1_3:3057901-3057920 | Msa0097260:CDS | 35.0% |
| GGTTGTAAATGTAAAGTCAC+TGG | - | chr1_3:3057962-3057981 | Msa0097260:CDS | 35.0% | |
| !! | CAATTTCATTGCTGACTTCT+AGG | + | chr1_3:3058251-3058270 | None:intergenic | 35.0% |
| ! | ATAGGAGTGGTTAGTTAGTT+TGG | - | chr1_3:3058333-3058352 | Msa0097260:exon | 35.0% |
| GCTGAATTCAATCCATGAAA+CGG | - | chr1_3:3058357-3058376 | Msa0097260:five_prime_UTR | 35.0% | |
| AATCAATCAAGACCGTTTCA+TGG | + | chr1_3:3058372-3058391 | None:intergenic | 35.0% | |
| CTTGATTGATTAGCATAGTG+AGG | - | chr1_3:3058381-3058400 | Msa0097260:five_prime_UTR | 35.0% | |
| GGAATTTGTCGTTCTTCAAA+TGG | - | chr1_3:3058423-3058442 | Msa0097260:five_prime_UTR | 35.0% | |
| ! | ACCTTCCACCTTCACATTTT+CGG | - | chr1_3:3053979-3053998 | Msa0097260:three_prime_UTR | 40.0% |
| TAACACCGAAAATGTGAAGG+TGG | + | chr1_3:3053987-3054006 | None:intergenic | 40.0% | |
| ! | CGTGATTGTGATTGTGGTTT+TGG | + | chr1_3:3054023-3054042 | None:intergenic | 40.0% |
| TGACCGTTACGTTGTTATGA+AGG | + | chr1_3:3054107-3054126 | None:intergenic | 40.0% | |
| ACCGTTGTTACCTTCTGAAT+CGG | - | chr1_3:3054374-3054393 | Msa0097260:exon | 40.0% | |
| TCCGATTCAGAAGGTAACAA+CGG | + | chr1_3:3054378-3054397 | None:intergenic | 40.0% | |
| ATTGCATTGTCCGATTCAGA+AGG | + | chr1_3:3054387-3054406 | None:intergenic | 40.0% | |
| GAAGTAACTTCTCGTGCTTT+CGG | + | chr1_3:3054420-3054439 | None:intergenic | 40.0% | |
| GAAAAGAACTAACTCGCCAT+TGG | - | chr1_3:3054494-3054513 | Msa0097260:intron | 40.0% | |
| TTCACCGTTCTATTCACCAA+TGG | + | chr1_3:3054513-3054532 | None:intergenic | 40.0% | |
| ! | AAATGTTGTTTACTTCGGCG+AGG | - | chr1_3:3054661-3054680 | Msa0097260:CDS | 40.0% |
| ! | GAGTTTGAGGAAAAGTACAC+CGG | - | chr1_3:3054761-3054780 | Msa0097260:intron | 40.0% |
| ACTCTTCCTCTTCCAATTGT+CGG | + | chr1_3:3054819-3054838 | None:intergenic | 40.0% | |
| ATTGGAAGAGGAAGAGTGAA+CGG | - | chr1_3:3054822-3054841 | Msa0097260:intron | 40.0% | |
| TGATTCTGTTGTGATTTCGC+CGG | + | chr1_3:3054903-3054922 | None:intergenic | 40.0% | |
| ! | GAATGGATTTGGAAGCAATG+TGG | - | chr1_3:3054974-3054993 | Msa0097260:intron | 40.0% |
| GTCATTGCGGAATTCGTTAT+TGG | - | chr1_3:3055001-3055020 | Msa0097260:intron | 40.0% | |
| GTTACTTCTGGTAGTTCTTC+TGG | - | chr1_3:3055131-3055150 | Msa0097260:intron | 40.0% | |
| !! | TTTTTCGGCACCAAAAGCTT+CGG | + | chr1_3:3055287-3055306 | None:intergenic | 40.0% |
| ACGGCAAAACTCAAAACAGA+AGG | + | chr1_3:3055512-3055531 | None:intergenic | 40.0% | |
| ! | TTTTGCCGTTGATGTTCCAA+GGG | - | chr1_3:3055523-3055542 | Msa0097260:CDS | 40.0% |
| CATTGAGACTCCTACATAAC+AGG | - | chr1_3:3055582-3055601 | Msa0097260:intron | 40.0% | |
| ATTCAGTGTCTGCACAGAAA+GGG | + | chr1_3:3055648-3055667 | None:intergenic | 40.0% | |
| AATTCAGTGTCTGCACAGAA+AGG | + | chr1_3:3055649-3055668 | None:intergenic | 40.0% | |
| ! | TGAGTTTCGTGTGGATTGTA+TGG | - | chr1_3:3055770-3055789 | Msa0097260:CDS | 40.0% |
| !!! | TTCCATTTTGGTTGTCTGGT+TGG | - | chr1_3:3056225-3056244 | Msa0097260:intron | 40.0% |
| AACCAACCAGACAACCAAAA+TGG | + | chr1_3:3056230-3056249 | None:intergenic | 40.0% | |
| TCATACTTGCTCATTCAGGA+TGG | + | chr1_3:3056404-3056423 | None:intergenic | 40.0% | |
| AGGATCATACTTGCTCATTC+AGG | + | chr1_3:3056408-3056427 | None:intergenic | 40.0% | |
| GTGCCCAGTAATGATACAAA+TGG | + | chr1_3:3056589-3056608 | None:intergenic | 40.0% | |
| TGTTCTCTGATAGAGGTTAC+TGG | - | chr1_3:3056635-3056654 | Msa0097260:intron | 40.0% | |
| GTTCTCTGATAGAGGTTACT+GGG | - | chr1_3:3056636-3056655 | Msa0097260:intron | 40.0% | |
| ACCAAAAACAGGAAGACGTA+GGG | + | chr1_3:3056915-3056934 | None:intergenic | 40.0% | |
| CATTATGGCAGTATGGCAAA+AGG | + | chr1_3:3057182-3057201 | None:intergenic | 40.0% | |
| CCACAATCATAATCTAGCCT+GGG | + | chr1_3:3057289-3057308 | None:intergenic | 40.0% | |
| ACCACAATCATAATCTAGCC+TGG | + | chr1_3:3057290-3057309 | None:intergenic | 40.0% | |
| AGTTGTCAGCATAAGTGCAA+AGG | - | chr1_3:3057992-3058011 | Msa0097260:CDS | 40.0% | |
| TTGGATGATATTGTTGTGGC+AGG | - | chr1_3:3058130-3058149 | Msa0097260:CDS | 40.0% | |
| ! | ATTGTCTGACCTGTCCTTTT+TGG | - | chr1_3:3058287-3058306 | Msa0097260:CDS | 40.0% |
| ! | TTGTCTGACCTGTCCTTTTT+GGG | - | chr1_3:3058288-3058307 | Msa0097260:CDS | 40.0% |
| ATGATGTTAGCACCCCAAAA+AGG | + | chr1_3:3058304-3058323 | None:intergenic | 40.0% | |
| GGATTGCAAAGTGTGAAGAT+TGG | - | chr1_3:3058402-3058421 | Msa0097260:five_prime_UTR | 40.0% | |
| AAATGTGAAGGTGGAAGGTG+AGG | + | chr1_3:3053978-3053997 | None:intergenic | 45.0% | |
| ACCGAAAATGTGAAGGTGGA+AGG | + | chr1_3:3053983-3054002 | None:intergenic | 45.0% | |
| GATTCAGAAGGTAACAACGG+TGG | + | chr1_3:3054375-3054394 | None:intergenic | 45.0% | |
| CTCGCCATTGGTGAATAGAA+CGG | - | chr1_3:3054506-3054525 | Msa0097260:intron | 45.0% | |
| ACGGTTACAACACCGACAAT+TGG | - | chr1_3:3054804-3054823 | Msa0097260:intron | 45.0% | |
| ACAACACCGACAATTGGAAG+AGG | - | chr1_3:3054810-3054829 | Msa0097260:intron | 45.0% | |
| GATTTGGAAGCAATGTGGTC+AGG | - | chr1_3:3054979-3054998 | Msa0097260:intron | 45.0% | |
| !! | CAAAAATGGTGGATCTGAGC+AGG | - | chr1_3:3055070-3055089 | Msa0097260:intron | 45.0% |
| !! | TGGTAGTTCTTCTGGAGTAC+AGG | - | chr1_3:3055139-3055158 | Msa0097260:intron | 45.0% |
| !! | TCTTCTGGAGTACAGGAGTT+TGG | - | chr1_3:3055146-3055165 | Msa0097260:intron | 45.0% |
| AATCCATCTTCGAGAAACGG+TGG | - | chr1_3:3055236-3055255 | Msa0097260:intron | 45.0% | |
| ATTCCACCGTTTCTCGAAGA+TGG | + | chr1_3:3055242-3055261 | None:intergenic | 45.0% | |
| TCTTCGAGAAACGGTGGAAT+TGG | - | chr1_3:3055242-3055261 | Msa0097260:intron | 45.0% | |
| ! | AACAGTTCCTCCGAAGCTTT+TGG | - | chr1_3:3055274-3055293 | Msa0097260:intron | 45.0% |
| CTGCTTCTCCAAGTAAGCTA+GGG | - | chr1_3:3055393-3055412 | Msa0097260:intron | 45.0% | |
| TAGCAACACCGTTTCTTCCA+CGG | + | chr1_3:3055460-3055479 | None:intergenic | 45.0% | |
| ! | GTTTTGCCGTTGATGTTCCA+AGG | - | chr1_3:3055522-3055541 | Msa0097260:CDS | 45.0% |
| TTTGCCGTTGATGTTCCAAG+GGG | - | chr1_3:3055524-3055543 | Msa0097260:CDS | 45.0% | |
| TTTCCCCCTTGGAACATCAA+CGG | + | chr1_3:3055531-3055550 | None:intergenic | 45.0% | |
| GATGTTCCAAGGGGGAAAAT+TGG | - | chr1_3:3055533-3055552 | Msa0097260:CDS | 45.0% | |
| ! | TTCTCTCCAATTTTCCCCCT+TGG | + | chr1_3:3055542-3055561 | None:intergenic | 45.0% |
| GGGGAAAATTGGAGAGAACA+GGG | - | chr1_3:3055544-3055563 | Msa0097260:CDS | 45.0% | |
| TGTGCAGACACTGAATTCTG+AGG | - | chr1_3:3055652-3055671 | Msa0097260:intron | 45.0% | |
| AGAAAAGCCTCTATGGTGCT+TGG | - | chr1_3:3056296-3056315 | Msa0097260:CDS | 45.0% | |
| GAAAAGCCTCTATGGTGCTT+GGG | - | chr1_3:3056297-3056316 | Msa0097260:CDS | 45.0% | |
| CTACATGAAGCCAAATGCCA+TGG | + | chr1_3:3056549-3056568 | None:intergenic | 45.0% | |
| !!! | GCGGTTTTGTTCTCTGATAG+AGG | - | chr1_3:3056628-3056647 | Msa0097260:intron | 45.0% |
| TTTGGACGATTGGGCTATTC+TGG | - | chr1_3:3056835-3056854 | Msa0097260:intron | 45.0% | |
| ACGATTGGGCTATTCTGGAT+CGG | - | chr1_3:3056840-3056859 | Msa0097260:intron | 45.0% | |
| ! | ACCCTACGTCTTCCTGTTTT+TGG | - | chr1_3:3056911-3056930 | Msa0097260:intron | 45.0% |
| CACCAAAAACAGGAAGACGT+AGG | + | chr1_3:3056916-3056935 | None:intergenic | 45.0% | |
| !!! | CTACGTCTTCCTGTTTTTGG+TGG | - | chr1_3:3056914-3056933 | Msa0097260:intron | 45.0% |
| GGAGGCTATTTGTTCAGCAA+TGG | - | chr1_3:3057100-3057119 | Msa0097260:CDS | 45.0% | |
| TTCAGCAATGGATGTGATGC+AGG | - | chr1_3:3057112-3057131 | Msa0097260:CDS | 45.0% | |
| CTTCGGTAACAGTAGGCATA+TGG | + | chr1_3:3057150-3057169 | None:intergenic | 45.0% | |
| CATATGCCTACTGTTACCGA+AGG | - | chr1_3:3057148-3057167 | Msa0097260:CDS | 45.0% | |
| CCCAGGCTAGATTATGATTG+TGG | - | chr1_3:3057286-3057305 | Msa0097260:CDS | 45.0% | |
| AGCTTCTCATCGCTGTAGTT+TGG | - | chr1_3:3057731-3057750 | Msa0097260:CDS | 45.0% | |
| GCTTCTCATCGCTGTAGTTT+GGG | - | chr1_3:3057732-3057751 | Msa0097260:CDS | 45.0% | |
| ! | TGTCTGACCTGTCCTTTTTG+GGG | - | chr1_3:3058289-3058308 | Msa0097260:CDS | 45.0% |
| !!! | ATTTTCATATTTTAATTTTA+TGG | - | chr1_3:3057872-3057891 | Msa0097260:CDS | 5.0% |
| ACGCAGCGTGATTGTGATTG+TGG | + | chr1_3:3054029-3054048 | None:intergenic | 50.0% | |
| ! | CTTCGTGTTTTTCGTCGTCG+TGG | + | chr1_3:3054331-3054350 | None:intergenic | 50.0% |
| !! | AGAGAGCATCAACACCAACG+AGG | - | chr1_3:3054349-3054368 | Msa0097260:three_prime_UTR | 50.0% |
| !! | GGCGAGTTAGTTCTTTTCGG+CGG | + | chr1_3:3054492-3054511 | None:intergenic | 50.0% |
| GAGACAGAAATTGACGACGC+CGG | - | chr1_3:3054539-3054558 | Msa0097260:intron | 50.0% | |
| GACTGAGATCGTTTCACCGA+CGG | + | chr1_3:3054576-3054595 | None:intergenic | 50.0% | |
| GGTGAAACGATCTCAGTCGA+CGG | - | chr1_3:3054578-3054597 | Msa0097260:intron | 50.0% | |
| ! | GGGAGAATCGTTTTCGATGC+CGG | - | chr1_3:3054704-3054723 | Msa0097260:intron | 50.0% |
| ! | TGAGGAAAAGTACACCGGAG+AGG | - | chr1_3:3054766-3054785 | Msa0097260:intron | 50.0% |
| GCAATGTGGTCAGGTCATTG+CGG | - | chr1_3:3054988-3055007 | Msa0097260:intron | 50.0% | |
| GATCCTCGAGTTTCTCACGA+TGG | - | chr1_3:3055023-3055042 | Msa0097260:intron | 50.0% | |
| ! | TCTGGAGTACAGGAGTTTGG+AGG | - | chr1_3:3055149-3055168 | Msa0097260:intron | 50.0% |
| ! | AGCTCGAGCGATTGTTGTTC+CGG | - | chr1_3:3055190-3055209 | Msa0097260:intron | 50.0% |
| GGACGAACTGCAGAACGAAT+TGG | + | chr1_3:3055374-3055393 | None:intergenic | 50.0% | |
| CCTAGCTTACTTGGAGAAGC+AGG | + | chr1_3:3055395-3055414 | None:intergenic | 50.0% | |
| CCTGCTTCTCCAAGTAAGCT+AGG | - | chr1_3:3055392-3055411 | Msa0097260:intron | 50.0% | |
| GATGGCATCCCTAGCTTACT+TGG | + | chr1_3:3055404-3055423 | None:intergenic | 50.0% | |
| AGTCCTTGCCGTGGAAGAAA+CGG | - | chr1_3:3055449-3055468 | Msa0097260:intron | 50.0% | |
| TTGCCGTTGATGTTCCAAGG+GGG | - | chr1_3:3055525-3055544 | Msa0097260:CDS | 50.0% | |
| GGGGGAAAATTGGAGAGAAC+AGG | - | chr1_3:3055543-3055562 | Msa0097260:CDS | 50.0% | |
| TAGCTACCCAAGCACCATAG+AGG | + | chr1_3:3056306-3056325 | None:intergenic | 50.0% | |
| CGATTGGGCTATTCTGGATC+GGG | - | chr1_3:3056841-3056860 | Msa0097260:intron | 50.0% | |
| ATTCTGGATCGGGTGTACTC+TGG | - | chr1_3:3056851-3056870 | Msa0097260:intron | 50.0% | |
| !!! | TCCTGTTTTTGGTGGTGCCA+AGG | - | chr1_3:3056922-3056941 | Msa0097260:intron | 50.0% |
| ACCTTGGCACCACCAAAAAC+AGG | + | chr1_3:3056926-3056945 | None:intergenic | 50.0% | |
| AATGGATGTGATGCAGGCCA+TGG | - | chr1_3:3057118-3057137 | Msa0097260:CDS | 50.0% | |
| TAGGCATATGGAGGATGCCA+TGG | + | chr1_3:3057138-3057157 | None:intergenic | 50.0% | |
| CGGTAACAGTAGGCATATGG+AGG | + | chr1_3:3057147-3057166 | None:intergenic | 50.0% | |
| GTTAGCACCCCAAAAAGGAC+AGG | + | chr1_3:3058299-3058318 | None:intergenic | 50.0% | |
| AACGATCTCAGTCGACGGAG+CGG | - | chr1_3:3054583-3054602 | Msa0097260:intron | 55.0% | |
| ! | CAAGGTACTCCTCGGCCTAA+TGG | - | chr1_3:3054618-3054637 | Msa0097260:CDS | 55.0% |
| TCGGCCTAATGGTGAGACTC+CGG | - | chr1_3:3054629-3054648 | Msa0097260:CDS | 55.0% | |
| GCAACCGGAGTCTCACCATT+AGG | + | chr1_3:3054636-3054655 | None:intergenic | 55.0% | |
| GGCGGTTTCGCTTTACTCAC+CGG | + | chr1_3:3054726-3054745 | None:intergenic | 55.0% | |
| ! | GGAAAAGTACACCGGAGAGG+AGG | - | chr1_3:3054769-3054788 | Msa0097260:intron | 55.0% |
| AAGTACACCGGAGAGGAGGA+AGG | - | chr1_3:3054773-3054792 | Msa0097260:intron | 55.0% | |
| CTAGGTCAGTGGATCAGCAC+CGG | - | chr1_3:3054874-3054893 | Msa0097260:intron | 55.0% | |
| GCACCATCGTGAGAAACTCG+AGG | + | chr1_3:3055029-3055048 | None:intergenic | 55.0% | |
| GGAGTACAGGAGTTTGGAGG+TGG | - | chr1_3:3055152-3055171 | Msa0097260:intron | 55.0% | |
| ATCGCTCGAGCTGATCGTTG+CGG | + | chr1_3:3055182-3055201 | None:intergenic | 55.0% | |
| TTCGGCACCAAAAGCTTCGG+AGG | + | chr1_3:3055284-3055303 | None:intergenic | 55.0% | |
| ATTCCTCGTGGAGACGATGC+AGG | + | chr1_3:3055326-3055345 | None:intergenic | 55.0% | |
| ACACCGTTTCTTCCACGGCA+AGG | + | chr1_3:3055455-3055474 | None:intergenic | 55.0% | |
| ! | GTGTACTCTGGTTCCCTCTC+AGG | - | chr1_3:3056863-3056882 | Msa0097260:intron | 55.0% |
| AACAGGAAGACGTAGGGTGC+TGG | + | chr1_3:3056909-3056928 | None:intergenic | 55.0% | |
| GGTAACAACGGTGGCCTCGT+TGG | + | chr1_3:3054366-3054385 | None:intergenic | 60.0% | |
| ACCGACGGCGTAACTGTCAC+CGG | + | chr1_3:3054561-3054580 | None:intergenic | 60.0% | |
| ! | GGCAACGGCAAGGTACTCCT+CGG | - | chr1_3:3054610-3054629 | Msa0097260:CDS | 60.0% |
| GGAGTCTCACCATTAGGCCG+AGG | + | chr1_3:3054630-3054649 | None:intergenic | 60.0% | |
| AAACTCTGCACCGTCGCTGG+CGG | + | chr1_3:3054747-3054766 | None:intergenic | 60.0% | |
| CTCAAACTCTGCACCGTCGC+TGG | + | chr1_3:3054750-3054769 | None:intergenic | 60.0% | |
| CAGCGACGGTGCAGAGTTTG+AGG | - | chr1_3:3054748-3054767 | Msa0097260:intron | 60.0% | |
| ACCGGAGAGGAGGAAGGTTC+CGG | - | chr1_3:3054779-3054798 | Msa0097260:intron | 60.0% | |
| !! | GTCGGTGTTGTAACCGTCGC+CGG | + | chr1_3:3054801-3054820 | None:intergenic | 60.0% |
| GTTGTGATTTCGCCGGCCAC+CGG | + | chr1_3:3054896-3054915 | None:intergenic | 60.0% | |
| ! | GAGCGATTGTTGTTCCGGCG+AGG | - | chr1_3:3055195-3055214 | Msa0097260:intron | 60.0% |
| TCCGGCGAGGTTCTTGCAAG+AGG | - | chr1_3:3055208-3055227 | Msa0097260:intron | 60.0% | |
| GCCTCTTGCAAGAACCTCGC+CGG | + | chr1_3:3055212-3055231 | None:intergenic | 60.0% | |
| AGTCCTGCATCGTCTCCACG+AGG | - | chr1_3:3055320-3055339 | Msa0097260:intron | 60.0% | |
| AGCTAGGGATGCCATCACCG+AGG | - | chr1_3:3055408-3055427 | Msa0097260:intron | 60.0% | |
| AAGGACTCACACCGCGCGAA+GGG | + | chr1_3:3055436-3055455 | None:intergenic | 60.0% | |
| ! | AGGAGCGACCGAAGCGCTAA+AGG | - | chr1_3:3056883-3056902 | Msa0097260:intron | 60.0% |
| !! | GGTGCTGGCCTTTAGCGCTT+CGG | + | chr1_3:3056894-3056913 | None:intergenic | 60.0% |
| GCCGGTGACAGTTACGCCGT+CGG | - | chr1_3:3054557-3054576 | Msa0097260:intron | 65.0% | |
| GCCGGAACCTTCCTCCTCTC+CGG | + | chr1_3:3054783-3054802 | None:intergenic | 65.0% | |
| GAGGAGGAAGGTTCCGGCGA+CGG | - | chr1_3:3054785-3054804 | Msa0097260:intron | 65.0% | |
| ! | GGTCAGTGGATCAGCACCGG+TGG | - | chr1_3:3054877-3054896 | Msa0097260:intron | 65.0% |
| !! | AGTGGATCAGCACCGGTGGC+CGG | - | chr1_3:3054881-3054900 | Msa0097260:intron | 65.0% |
| AGGACTCACACCGCGCGAAG+GGG | + | chr1_3:3055435-3055454 | None:intergenic | 65.0% | |
| CAAGGACTCACACCGCGCGA+AGG | + | chr1_3:3055437-3055456 | None:intergenic | 65.0% | |
| CGCTTCGGTCGCTCCTGAGA+GGG | + | chr1_3:3056879-3056898 | None:intergenic | 65.0% | |
| CTCAGTCGACGGAGCGGCAG+AGG | - | chr1_3:3054589-3054608 | Msa0097260:CDS | 70.0% | |
| CGACGGAGCGGCAGAGGCAA+CGG | - | chr1_3:3054595-3054614 | Msa0097260:CDS | 70.0% | |
| GAGCGGCAGAGGCAACGGCA+AGG | - | chr1_3:3054600-3054619 | Msa0097260:CDS | 70.0% | |
| AGCGAAACCGCCGCCAGCGA+CGG | - | chr1_3:3054734-3054753 | Msa0097260:intron | 70.0% | |
| CGCGAAGGGGACCTCGGTGA+TGG | + | chr1_3:3055422-3055441 | None:intergenic | 70.0% | |
| TCACCGAGGTCCCCTTCGCG+CGG | - | chr1_3:3055422-3055441 | Msa0097260:intron | 70.0% | |
| ACACCGCGCGAAGGGGACCT+CGG | + | chr1_3:3055428-3055447 | None:intergenic | 70.0% | |
| CGCGGTGTGAGTCCTTGCCG+TGG | - | chr1_3:3055440-3055459 | Msa0097260:intron | 70.0% | |
| GCGCTTCGGTCGCTCCTGAG+AGG | + | chr1_3:3056880-3056899 | None:intergenic | 70.0% | |
| CTCTGCACCGTCGCTGGCGG+CGG | + | chr1_3:3054744-3054763 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 3053961 | 3058694 | 3053961 | ID=Msa0097260;Name=Msa0097260 |
| chr1_3 | mRNA | 3053961 | 3058694 | 3053961 | ID=Msa0097260-mRNA-1;Parent=Msa0097260;Name=Msa0097260-mRNA-1;_AED=0.05;_eAED=0.05;_QI=345|1|1|1|1|1|6|429|622 |
| chr1_3 | exon | 3053961 | 3054455 | 3053961 | ID=Msa0097260-mRNA-1:exon:870;Parent=Msa0097260-mRNA-1 |
| chr1_3 | exon | 3054585 | 3054692 | 3054585 | ID=Msa0097260-mRNA-1:exon:869;Parent=Msa0097260-mRNA-1 |
| chr1_3 | exon | 3055486 | 3055575 | 3055486 | ID=Msa0097260-mRNA-1:exon:868;Parent=Msa0097260-mRNA-1 |
| chr1_3 | exon | 3055712 | 3055828 | 3055712 | ID=Msa0097260-mRNA-1:exon:867;Parent=Msa0097260-mRNA-1 |
| chr1_3 | exon | 3056238 | 3056357 | 3056238 | ID=Msa0097260-mRNA-1:exon:866;Parent=Msa0097260-mRNA-1 |
| chr1_3 | exon | 3056982 | 3058694 | 3056982 | ID=Msa0097260-mRNA-1:exon:865;Parent=Msa0097260-mRNA-1 |
| chr1_3 | five_prime_UTR | 3058350 | 3058694 | 3058350 | ID=Msa0097260-mRNA-1:five_prime_utr;Parent=Msa0097260-mRNA-1 |
| chr1_3 | CDS | 3056982 | 3058349 | 3056982 | ID=Msa0097260-mRNA-1:cds;Parent=Msa0097260-mRNA-1 |
| chr1_3 | CDS | 3056238 | 3056357 | 3056238 | ID=Msa0097260-mRNA-1:cds;Parent=Msa0097260-mRNA-1 |
| chr1_3 | CDS | 3055712 | 3055828 | 3055712 | ID=Msa0097260-mRNA-1:cds;Parent=Msa0097260-mRNA-1 |
| chr1_3 | CDS | 3055486 | 3055575 | 3055486 | ID=Msa0097260-mRNA-1:cds;Parent=Msa0097260-mRNA-1 |
| chr1_3 | CDS | 3054585 | 3054692 | 3054585 | ID=Msa0097260-mRNA-1:cds;Parent=Msa0097260-mRNA-1 |
| chr1_3 | CDS | 3054390 | 3054455 | 3054390 | ID=Msa0097260-mRNA-1:cds;Parent=Msa0097260-mRNA-1 |
| chr1_3 | three_prime_UTR | 3053961 | 3054389 | 3053961 | ID=Msa0097260-mRNA-1:three_prime_utr;Parent=Msa0097260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
