Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530820 | XP_013454685.1 | 95.246 | 631 | 19 | 1 | 1 | 631 | 1 | 620 | 0.0 | 1211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530820 | sp|Q15061|WDR43_HUMAN | 23.163 | 626 | 378 | 19 | 10 | 583 | 17 | 591 | 1.04e-16 | 87.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530820 | A0A072UH09 | 95.246 | 631 | 19 | 1 | 1 | 631 | 1 | 620 | 0.0 | 1211 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0146340 | Msa0530820 | 0.800473 | 1.417700e-48 | -8.615850e-47 |
| Msa0150300 | Msa0530820 | 0.847548 | 1.078597e-59 | -8.615850e-47 |
| Msa0189320 | Msa0530820 | 0.833451 | 5.293670e-56 | -8.615850e-47 |
| Msa0395890 | Msa0530820 | 0.846193 | 2.533403e-59 | -8.615850e-47 |
| Msa0447220 | Msa0530820 | 0.811275 | 7.594448e-51 | -8.615850e-47 |
| Msa0241390 | Msa0530820 | 0.830270 | 3.227117e-55 | -8.615850e-47 |
| Msa0530820 | Msa0647500 | 0.812652 | 3.806212e-51 | -8.615850e-47 |
| Msa0530820 | Msa0788850 | 0.819872 | 9.246581e-53 | -8.615850e-47 |
| Msa0530820 | Msa0945990 | 0.812292 | 4.562689e-51 | -8.615850e-47 |
| Msa0530820 | Msa1109600 | 0.877635 | 5.366484e-69 | -8.615850e-47 |
| Msa0530820 | Msa1327510 | 0.821407 | 4.105031e-53 | -8.615850e-47 |
| Msa0530820 | Msa1399530 | 0.807881 | 4.069591e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530820 | MtrunA17_Chr4g0003771 | 95.246 | 631 | 19 | 1 | 1 | 631 | 1 | 620 | 0.0 | 1211 |
| Msa0530820 | MtrunA17_Chr4g0067821 | 25.505 | 643 | 397 | 15 | 10 | 610 | 10 | 612 | 3.86e-44 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530820 | AT1G15420.1 | 55.670 | 194 | 74 | 4 | 376 | 567 | 35 | 218 | 8.59e-58 | 196 |
| Msa0530820 | AT1G15420.2 | 55.491 | 173 | 65 | 4 | 376 | 546 | 35 | 197 | 1.00e-49 | 172 |
| Msa0530820 | AT5G11240.1 | 26.678 | 596 | 350 | 14 | 10 | 567 | 9 | 555 | 4.40e-45 | 170 |
Find 167 sgRNAs with CRISPR-Local
Find 457 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTAAATATTAGTGATTT+AGG | 0.140856 | 4_1:-4903472 | Msa0530820:CDS |
| ATATCTGATTTAGGTGATTT+TGG | 0.152516 | 4_1:-4906396 | Msa0530820:intron |
| ATCCAGCTCTGTGTCATTCT+TGG | 0.154928 | 4_1:+4902118 | None:intergenic |
| TCCCCAATTGTTTGCTCATT+TGG | 0.165741 | 4_1:+4902179 | None:intergenic |
| TCATTCTAGGGGTGCAATTT+TGG | 0.170768 | 4_1:-4901290 | Msa0530820:intron |
| TTAGTATATCTGACCTTTCT+TGG | 0.181897 | 4_1:+4903387 | None:intergenic |
| TGCTAATAGCTGGGACTTAA+TGG | 0.195948 | 4_1:+4900264 | None:intergenic |
| CACAACTGACAAGGTGGATT+TGG | 0.246483 | 4_1:-4902813 | Msa0530820:CDS |
| CCTTCACAGTTTACATCTTC+AGG | 0.280909 | 4_1:-4907710 | Msa0530820:intron |
| AAAGTAAACATCTTCAAGTT+TGG | 0.292180 | 4_1:-4903849 | Msa0530820:CDS |
| TCTTAAATATTAGTGATTTA+GGG | 0.295585 | 4_1:-4903471 | Msa0530820:CDS |
| ATGGAATTTGGATGCAATAA+AGG | 0.313012 | 4_1:+4903564 | None:intergenic |
| ATGACACTTACCATATCATT+AGG | 0.325045 | 4_1:+4904007 | None:intergenic |
| GTCTCAGCAGTTACGTCTTC+AGG | 0.326049 | 4_1:-4903718 | Msa0530820:CDS |
| GACCGGACAGGGAGTGGCGG+CGG | 0.329841 | 4_1:+4907752 | None:intergenic |
| ACTGACTAATCTCAATTTAC+TGG | 0.335974 | 4_1:-4902153 | Msa0530820:CDS |
| AACTTGCTCTTTGTCACTCT+TGG | 0.336193 | 4_1:+4902085 | None:intergenic |
| TCCGTGTCCACATAGATAAT+TGG | 0.336735 | 4_1:+4900460 | None:intergenic |
| TGGAGGTGTGACTTAAGTTT+AGG | 0.341028 | 4_1:-4903829 | Msa0530820:CDS |
| CTCAAAACTGTGATGCTTTG+TGG | 0.343002 | 4_1:+4900150 | None:intergenic |
| GGTACCTCTTTGTTGTTTGA+AGG | 0.349281 | 4_1:-4906375 | Msa0530820:five_prime_UTR |
| CTTACGGCTTTCACACCTAA+TGG | 0.350828 | 4_1:-4906313 | Msa0530820:CDS |
| GATGGTGAAGGGTAAGTTAA+AGG | 0.352630 | 4_1:-4906344 | Msa0530820:CDS |
| GATCCAAATGAGCAAACAAT+TGG | 0.355713 | 4_1:-4902182 | Msa0530820:CDS |
| TGTATTGCATGCAGTTTCAC+TGG | 0.359064 | 4_1:-4905525 | Msa0530820:CDS |
| ATGCAGTTTCACTGGGATAA+AGG | 0.361884 | 4_1:-4905517 | Msa0530820:intron |
| TCAGTTGTGGTTGGAAGATC+AGG | 0.364295 | 4_1:+4902827 | None:intergenic |
| TATGAGTTTAATTCTGAAAC+AGG | 0.368224 | 4_1:-4904261 | Msa0530820:CDS |
| GGACAGCTTCTTTGTGTTGT+TGG | 0.373076 | 4_1:-4904300 | Msa0530820:CDS |
| AGATGACCGCACCCTTCTTC+TGG | 0.376441 | 4_1:-4902003 | Msa0530820:CDS |
| CGAGTTATAAGTTGGGAAAC+TGG | 0.378633 | 4_1:-4904049 | Msa0530820:CDS |
| TGTTATCAATTGCTAATAGC+TGG | 0.379550 | 4_1:+4900254 | None:intergenic |
| CTTTGTGTTGTTGGACATGA+TGG | 0.379769 | 4_1:-4904291 | Msa0530820:CDS |
| TAAGAGAATTAAGTAGTTTG+AGG | 0.391173 | 4_1:+4901816 | None:intergenic |
| TTATATCCATTATTGAATCT+AGG | 0.394282 | 4_1:-4901796 | Msa0530820:intron |
| CCTACTAGTCATCCGATTCC+CGG | 0.395768 | 4_1:-4905173 | Msa0530820:CDS |
| ACCCTTGAGGCATGCTCCAT+TGG | 0.397420 | 4_1:-4903782 | Msa0530820:CDS |
| TCTGAAGTGCCCTAATGATA+TGG | 0.401133 | 4_1:-4904017 | Msa0530820:intron |
| GTGTGTGCGGCGGACCGGAC+AGG | 0.406435 | 4_1:+4907740 | None:intergenic |
| GCAGCTATTCTGTCTGCAAA+TGG | 0.415659 | 4_1:-4906283 | Msa0530820:CDS |
| GCTATCTTTGTCAGTGTCCA+TGG | 0.417175 | 4_1:+4900411 | None:intergenic |
| ATCCAAATGAGCAAACAATT+GGG | 0.422843 | 4_1:-4902181 | Msa0530820:CDS |
| ACAACTGACAAGGTGGATTT+GGG | 0.423409 | 4_1:-4902812 | Msa0530820:intron |
| TGTGGACAAGCAAATGTATA+TGG | 0.428052 | 4_1:+4900168 | None:intergenic |
| TGCATCCAAATTCCATTCCA+TGG | 0.428872 | 4_1:-4903557 | Msa0530820:CDS |
| GTATTACCTAGATTCAATAA+TGG | 0.432211 | 4_1:+4901790 | None:intergenic |
| GTCAGTGTCCATGGCATCCT+CGG | 0.432229 | 4_1:+4900420 | None:intergenic |
| TTGGAAGACAGATTTAAAAG+TGG | 0.432645 | 4_1:+4900637 | None:intergenic |
| CGGATGTGTGTGCGGCGGAC+CGG | 0.433814 | 4_1:+4907735 | None:intergenic |
| GCGGCGGACCGGACAGGGAG+TGG | 0.436768 | 4_1:+4907746 | None:intergenic |
| CTCGCTGTTGATGTTTCCAC+TGG | 0.439393 | 4_1:-4905209 | Msa0530820:CDS |
| ATGCAAGCTGTGTTGACTTA+TGG | 0.439684 | 4_1:-4903520 | Msa0530820:CDS |
| TTAGCTCTCGGAACGGAAGA+TGG | 0.440496 | 4_1:-4905239 | Msa0530820:CDS |
| TCCCGCCGCCACTCCCTGTC+CGG | 0.447636 | 4_1:-4907754 | Msa0530820:five_prime_UTR |
| CTAGACTACGAGTTATAAGT+TGG | 0.457270 | 4_1:-4904057 | Msa0530820:CDS |
| TCTTCACTGGCTTTCTCACA+TGG | 0.458648 | 4_1:-4904198 | Msa0530820:intron |
| GGAGAATGTGGTATTAAATG+TGG | 0.458764 | 4_1:-4903449 | Msa0530820:CDS |
| ATAGCTGCATAGTCACCATT+AGG | 0.460078 | 4_1:+4906298 | None:intergenic |
| TTTCCACTGGTGAGAGGAAG+TGG | 0.461504 | 4_1:-4905196 | Msa0530820:CDS |
| GGTGTGAAAGCCGTAAGAAC+AGG | 0.461677 | 4_1:+4906319 | None:intergenic |
| ACCGGACAGGGAGTGGCGGC+GGG | 0.461894 | 4_1:+4907753 | None:intergenic |
| GTTAAAGGAACCTGTTCTTA+CGG | 0.464735 | 4_1:-4906329 | Msa0530820:CDS |
| ATTGAATGAAAACGTTATCA+TGG | 0.468450 | 4_1:-4900065 | Msa0530820:three_prime_UTR |
| CGGTCCGCCGCACACACATC+CGG | 0.476701 | 4_1:-4907734 | Msa0530820:five_prime_UTR |
| TGACAGAAATACCCGGGAAT+CGG | 0.480215 | 4_1:+4905161 | None:intergenic |
| TGTCTAAGAAACTTGAGAGT+TGG | 0.481539 | 4_1:+4900618 | None:intergenic |
| CTTCAGGTGGAACTTACATA+TGG | 0.486164 | 4_1:-4903702 | Msa0530820:CDS |
| TGACACTTACCATATCATTA+GGG | 0.487717 | 4_1:+4904008 | None:intergenic |
| TTGGTTCTTGATTGCCACTC+CGG | 0.488851 | 4_1:-4903763 | Msa0530820:CDS |
| GCTCATTTGGATCATCATCA+AGG | 0.491997 | 4_1:+4902192 | None:intergenic |
| ATTAAGTAGTTTGAGGACGT+TGG | 0.492657 | 4_1:+4901823 | None:intergenic |
| GATAATCTTAGTGACGTTGA+AGG | 0.493113 | 4_1:-4900358 | Msa0530820:CDS |
| ACTGAAAGCAGCAGTAGAAA+AGG | 0.494658 | 4_1:-4902888 | Msa0530820:intron |
| GTAAACATCTTCAAGTTTGG+AGG | 0.497984 | 4_1:-4903846 | Msa0530820:CDS |
| AGTAGTTTGAGGACGTTGGA+TGG | 0.498447 | 4_1:+4901827 | None:intergenic |
| GATCAATGTGAGGTTGTTGA+TGG | 0.503198 | 4_1:-4902218 | Msa0530820:CDS |
| GCATCCAAATTCCATTCCAT+GGG | 0.503938 | 4_1:-4903556 | Msa0530820:CDS |
| CATGACAGCCTTTCCAAGAA+AGG | 0.505596 | 4_1:-4903400 | Msa0530820:intron |
| ATAGCGAAAGTTCAAAGAAA+AGG | 0.506147 | 4_1:-4903594 | Msa0530820:CDS |
| AGACAAAGTCGAAAGTGATA+AGG | 0.506707 | 4_1:-4903620 | Msa0530820:CDS |
| CAGCTATTCTGTCTGCAAAT+GGG | 0.511683 | 4_1:-4906282 | Msa0530820:CDS |
| AGAAGCTTACCCCGGTGTAA+AGG | 0.512950 | 4_1:+4900594 | None:intergenic |
| TGAGAAAGCCAGTGAAGAGA+TGG | 0.517464 | 4_1:+4904203 | None:intergenic |
| TGTACAAGCAATCCAGAAGA+AGG | 0.518949 | 4_1:+4901991 | None:intergenic |
| AAGGCTGTCATGCTTCTGAA+TGG | 0.520204 | 4_1:+4903411 | None:intergenic |
| TGAAGGTAGTGATGGTATGA+TGG | 0.520944 | 4_1:-4900341 | Msa0530820:CDS |
| GTTCCGAGAGCTAATAAGTA+AGG | 0.523266 | 4_1:+4905248 | None:intergenic |
| CAAATCCACCTTGTCAGTTG+TGG | 0.523283 | 4_1:+4902814 | None:intergenic |
| ACTGACAAAGATAGCAAAGA+AGG | 0.524530 | 4_1:-4900403 | Msa0530820:CDS |
| TCCACCTTGTCAGTTGTGGT+TGG | 0.526474 | 4_1:+4902818 | None:intergenic |
| CCGGGAATCGGATGACTAGT+AGG | 0.527690 | 4_1:+4905173 | None:intergenic |
| AAGTTGGGAAACTGGTAAAG+AGG | 0.528152 | 4_1:-4904041 | Msa0530820:CDS |
| TCATCATACAGTGGGATTTG+CGG | 0.532835 | 4_1:-4904342 | Msa0530820:intron |
| GGACCTTACTTATTAGCTCT+CGG | 0.532898 | 4_1:-4905251 | Msa0530820:CDS |
| CTTAAATATTAGTGATTTAG+GGG | 0.534808 | 4_1:-4903470 | Msa0530820:CDS |
| ATATCTGACCTTTCTTGGAA+AGG | 0.536348 | 4_1:+4903392 | None:intergenic |
| CTACTAGTCATCCGATTCCC+GGG | 0.537747 | 4_1:-4905172 | Msa0530820:intron |
| GTTATCAATTGCTAATAGCT+GGG | 0.540175 | 4_1:+4900255 | None:intergenic |
| GCATGCCTCAAGGGTAGTGT+TGG | 0.546380 | 4_1:+4903790 | None:intergenic |
| GTAGTTTGAGGACGTTGGAT+GGG | 0.548008 | 4_1:+4901828 | None:intergenic |
| GTATTGCATGCAGTTTCACT+GGG | 0.549542 | 4_1:-4905524 | Msa0530820:CDS |
| TGTGTGCGGCGGACCGGACA+GGG | 0.550097 | 4_1:+4907741 | None:intergenic |
| AATTTGAATGCCTCTTCTGA+AGG | 0.551388 | 4_1:-4903676 | Msa0530820:CDS |
| GCAGAGTGGAAGCCATCAGA+TGG | 0.554222 | 4_1:-4905570 | Msa0530820:CDS |
| TAGTGATTTAGGGGAGAATG+TGG | 0.555475 | 4_1:-4903461 | Msa0530820:CDS |
| GAGAATGTGGTATTAAATGT+GGG | 0.555720 | 4_1:-4903448 | Msa0530820:CDS |
| AAGGTTAACTGAGATGGTGA+AGG | 0.556011 | 4_1:-4906356 | Msa0530820:exon |
| ATCCAAGAATGACACAGAGC+TGG | 0.556575 | 4_1:-4902120 | Msa0530820:CDS |
| GCGGACCGGACAGGGAGTGG+CGG | 0.558656 | 4_1:+4907749 | None:intergenic |
| TTCTTAGACATCCTTTACAC+CGG | 0.558696 | 4_1:-4900605 | Msa0530820:CDS |
| CTTGTACACGCAAGATGAGA+AGG | 0.561271 | 4_1:-4901976 | Msa0530820:intron |
| ACCAATGGAGCATGCCTCAA+GGG | 0.561747 | 4_1:+4903781 | None:intergenic |
| TAGACTACGAGTTATAAGTT+GGG | 0.563426 | 4_1:-4904056 | Msa0530820:CDS |
| GAGTGGCAATCAAGAACCAA+TGG | 0.567220 | 4_1:+4903766 | None:intergenic |
| TGAAACAGGAGAGCTTCTAA+AGG | 0.570461 | 4_1:-4904247 | Msa0530820:CDS |
| TCTACACTATCTGCACTTGG+AGG | 0.572947 | 4_1:+4902053 | None:intergenic |
| TGTTTGAAGGTTAACTGAGA+TGG | 0.574502 | 4_1:-4906362 | Msa0530820:exon |
| GTTCTTGATTGCCACTCCGG+TGG | 0.575186 | 4_1:-4903760 | Msa0530820:CDS |
| AAGAGAATCCGAGGATGCCA+TGG | 0.575249 | 4_1:-4900428 | Msa0530820:CDS |
| TTTGTGTTGTTGGACATGAT+GGG | 0.577817 | 4_1:-4904290 | Msa0530820:CDS |
| TGCAAGTGGAATAATGTCCC+AGG | 0.578119 | 4_1:-4901227 | Msa0530820:CDS |
| TAAATCATCTTCATTGCCAC+CGG | 0.579220 | 4_1:+4903744 | None:intergenic |
| AAGAAAGAAAACAAACTCGA+AGG | 0.580778 | 4_1:+4907814 | None:intergenic |
| CTGAAGATGTAAACTGTGAA+GGG | 0.582142 | 4_1:+4907711 | None:intergenic |
| AACCAATGGAGCATGCCTCA+AGG | 0.585971 | 4_1:+4903780 | None:intergenic |
| CCTGAAGATGTAAACTGTGA+AGG | 0.588350 | 4_1:+4907710 | None:intergenic |
| AACAGTGCCAATTATCTATG+TGG | 0.590133 | 4_1:-4900467 | Msa0530820:CDS |
| CTGACAAAGATAGCAAAGAA+GGG | 0.592191 | 4_1:-4900402 | Msa0530820:CDS |
| AGAAGTAGACATTTCAGCCA+TGG | 0.592596 | 4_1:+4901256 | None:intergenic |
| ACATCTACACTATCTGCACT+TGG | 0.592728 | 4_1:+4902050 | None:intergenic |
| CTACTTCTACAGCATGCAAG+TGG | 0.594965 | 4_1:-4901241 | Msa0530820:CDS |
| ATATCATGAACTCCATCTGA+TGG | 0.595193 | 4_1:+4905558 | None:intergenic |
| GCCAATTATCTATGTGGACA+CGG | 0.599140 | 4_1:-4900461 | Msa0530820:CDS |
| TCTTAGACATCCTTTACACC+GGG | 0.601967 | 4_1:-4900604 | Msa0530820:CDS |
| CAGATTTGGAATACAAACAG+TGG | 0.605146 | 4_1:-4905603 | Msa0530820:CDS |
| TGTTGTTGGACATGATGGGA+AGG | 0.606171 | 4_1:-4904286 | Msa0530820:CDS |
| TCTTCCAACCACAACTGACA+AGG | 0.614649 | 4_1:-4902822 | Msa0530820:CDS |
| AGATGTAAACTGTGAAGGGC+CGG | 0.616120 | 4_1:+4907715 | None:intergenic |
| AGGTTAACTGAGATGGTGAA+GGG | 0.617825 | 4_1:-4906355 | Msa0530820:exon |
| TCCAAATGAGCAAACAATTG+GGG | 0.618540 | 4_1:-4902180 | Msa0530820:CDS |
| AGTGACGTTGAAGGTAGTGA+TGG | 0.620717 | 4_1:-4900349 | Msa0530820:CDS |
| TGAATAGGTGCTTGACGAGG+AGG | 0.621235 | 4_1:-4900503 | Msa0530820:intron |
| TTACTTATTAGCTCTCGGAA+CGG | 0.621773 | 4_1:-4905246 | Msa0530820:CDS |
| GTGTACTTGACCTTCAGAAG+AGG | 0.628171 | 4_1:+4903666 | None:intergenic |
| AGTTTAGGAACTGTGAGTGG+TGG | 0.629851 | 4_1:-4903814 | Msa0530820:CDS |
| TATTCTGTCTGCAAATGGGA+CGG | 0.630145 | 4_1:-4906278 | Msa0530820:CDS |
| TTGATGTTTCCACTGGTGAG+AGG | 0.633142 | 4_1:-4905202 | Msa0530820:CDS |
| TTAACCTTCAAACAACAAAG+AGG | 0.640300 | 4_1:+4906371 | None:intergenic |
| TGAAGGGCCGGATGTGTGTG+CGG | 0.642149 | 4_1:+4907727 | None:intergenic |
| TGATAGTGAAAGAGAATCCG+AGG | 0.642868 | 4_1:-4900437 | Msa0530820:CDS |
| GTGGAGATTTGTTAGCAGAG+TGG | 0.645375 | 4_1:-4905584 | Msa0530820:CDS |
| TGACAAAGATAGCAAAGAAG+GGG | 0.645803 | 4_1:-4900401 | Msa0530820:CDS |
| AGGCCACTTCCTCTCACCAG+TGG | 0.645921 | 4_1:+4905193 | None:intergenic |
| TCCAACCACAACTGACAAGG+TGG | 0.646455 | 4_1:-4902819 | Msa0530820:CDS |
| AGCAATCCAGAAGAAGGGTG+CGG | 0.646504 | 4_1:+4901997 | None:intergenic |
| GTACAAGCAATCCAGAAGAA+GGG | 0.650839 | 4_1:+4901992 | None:intergenic |
| CATCTTCATTGCCACCGGAG+TGG | 0.651757 | 4_1:+4903749 | None:intergenic |
| TCAGCAGTTACGTCTTCAGG+TGG | 0.656715 | 4_1:-4903715 | Msa0530820:CDS |
| TGTTGAATAGGTGCTTGACG+AGG | 0.666788 | 4_1:-4900506 | Msa0530820:intron |
| CATCCAAATTCCATTCCATG+GGG | 0.678818 | 4_1:-4903555 | Msa0530820:CDS |
| ATATTTAAGACTGTAAACTG+TGG | 0.690852 | 4_1:+4903484 | None:intergenic |
| TTAAGTTTAGGAACTGTGAG+TGG | 0.702462 | 4_1:-4903817 | Msa0530820:CDS |
| AGGGCCGGATGTGTGTGCGG+CGG | 0.702907 | 4_1:+4907730 | None:intergenic |
| ATTTAATGTAGATCAATGTG+AGG | 0.722303 | 4_1:-4902228 | Msa0530820:intron |
| ATCCAAATTCCATTCCATGG+GGG | 0.733289 | 4_1:-4903554 | Msa0530820:CDS |
| GTGGTCCAACACTACCCTTG+AGG | 0.738669 | 4_1:-4903795 | Msa0530820:CDS |
| CTTAGACATCCTTTACACCG+GGG | 0.742537 | 4_1:-4900603 | Msa0530820:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACATTCAAAAAATAAAT+TGG | + | chr4_1:4905538-4905557 | None:intergenic | 10.0% |
| !!! | ATTTTTTGAATGTTAATTAT+TGG | - | chr4_1:4905542-4905561 | Msa0530820:CDS | 10.0% |
| !! | AAATTTGATTATTTCAATTG+AGG | + | chr4_1:4900246-4900265 | None:intergenic | 15.0% |
| !!! | TCATTTTCTTTTTTATATGA+TGG | - | chr4_1:4901204-4901223 | Msa0530820:CDS | 15.0% |
| !!! | TGTTTTTTTAATGCTTTAAA+AGG | - | chr4_1:4902482-4902501 | Msa0530820:intron | 15.0% |
| !! | TTTATTAAATATACAATGCA+TGG | + | chr4_1:4902816-4902835 | None:intergenic | 15.0% |
| !!! | AATTTTTGTATACTTCATAT+TGG | - | chr4_1:4903268-4903287 | Msa0530820:intron | 15.0% |
| !!! | ATCGATACATTTTTAAATAT+GGG | + | chr4_1:4903341-4903360 | None:intergenic | 15.0% |
| !!! | AATCGATACATTTTTAAATA+TGG | + | chr4_1:4903342-4903361 | None:intergenic | 15.0% |
| !! | AAGAACAACAAATTATATAA+CGG | + | chr4_1:4903448-4903467 | None:intergenic | 15.0% |
| !! | TCTTAAATATTAGTGATTTA+GGG | - | chr4_1:4904352-4904371 | Msa0530820:intron | 15.0% |
| !! | ATGTATAAATAAGAGAAATA+AGG | - | chr4_1:4904628-4904647 | Msa0530820:intron | 15.0% |
| !! | TGTATAAATAAGAGAAATAA+GGG | - | chr4_1:4904629-4904648 | Msa0530820:intron | 15.0% |
| !! | ATAAAACATGAAATTCTATT+TGG | - | chr4_1:4904807-4904826 | Msa0530820:intron | 15.0% |
| !!! | TAATATTTTAAATTGTTTGC+TGG | - | chr4_1:4905043-4905062 | Msa0530820:intron | 15.0% |
| !! | CTATTAAGAATAAAAGAAAA+AGG | - | chr4_1:4905282-4905301 | Msa0530820:intron | 15.0% |
| !! | TGAAATTAAAAATCTAGAAA+TGG | + | chr4_1:4906152-4906171 | None:intergenic | 15.0% |
| !!! | TAATTATGATACTTGTTAAA+GGG | + | chr4_1:4906428-4906447 | None:intergenic | 15.0% |
| !!! | ATAATTATGATACTTGTTAA+AGG | + | chr4_1:4906429-4906448 | None:intergenic | 15.0% |
| !!! | TGTTATAAATCTACAATTTT+TGG | - | chr4_1:4906868-4906887 | Msa0530820:intron | 15.0% |
| !!! | GTTATAAATCTACAATTTTT+GGG | - | chr4_1:4906869-4906888 | Msa0530820:intron | 15.0% |
| !! | AATAAGTTGTTTATCCAAAT+AGG | - | chr4_1:4900588-4900607 | Msa0530820:intron | 20.0% |
| !! | ATAAGTTGTTTATCCAAATA+GGG | - | chr4_1:4900589-4900608 | Msa0530820:intron | 20.0% |
| !!! | TTAATGTGGAAAATTTTGAA+TGG | - | chr4_1:4900668-4900687 | Msa0530820:intron | 20.0% |
| !! | TTTGATATACAATACAACAA+GGG | + | chr4_1:4900867-4900886 | None:intergenic | 20.0% |
| !!! | TTTTGATATACAATACAACA+AGG | + | chr4_1:4900868-4900887 | None:intergenic | 20.0% |
| !!! | TCCTTTTTTCGTATATTTTA+TGG | - | chr4_1:4900988-4901007 | Msa0530820:intron | 20.0% |
| !!! | CCTTTTTTCGTATATTTTAT+GGG | - | chr4_1:4900989-4901008 | Msa0530820:intron | 20.0% |
| !! | AAAATAAAGAGTAAAGCTTA+TGG | + | chr4_1:4901175-4901194 | None:intergenic | 20.0% |
| !!! | TTTCTTTTTTATATGATGGT+TGG | - | chr4_1:4901208-4901227 | Msa0530820:CDS | 20.0% |
| !! | ATAATTGTTAACTCTTACTT+TGG | - | chr4_1:4901684-4901703 | Msa0530820:intron | 20.0% |
| !!! | TTTTCGTTAAAAGACAAAAT+TGG | + | chr4_1:4901853-4901872 | None:intergenic | 20.0% |
| !!! | AATAAGATTTTGTTGGATAT+TGG | - | chr4_1:4902132-4902151 | Msa0530820:CDS | 20.0% |
| !!! | AATAGTTTTACTTTGTTCAA+TGG | + | chr4_1:4902758-4902777 | None:intergenic | 20.0% |
| !! | GCAAATATTAAATTTGTCAT+TGG | - | chr4_1:4902917-4902936 | Msa0530820:intron | 20.0% |
| !!! | ATTGGTTCACATTTTATATT+TGG | + | chr4_1:4902988-4903007 | None:intergenic | 20.0% |
| !!! | TACATTTTTAAATATGGGAT+GGG | + | chr4_1:4903336-4903355 | None:intergenic | 20.0% |
| !!! | ATACATTTTTAAATATGGGA+TGG | + | chr4_1:4903337-4903356 | None:intergenic | 20.0% |
| !! | TGAAACTGGTAATAATATTA+AGG | + | chr4_1:4903366-4903385 | None:intergenic | 20.0% |
| !! | ATGTAACAAGATTAATTGTT+AGG | + | chr4_1:4903684-4903703 | None:intergenic | 20.0% |
| !! | TAACAATTAATCTTGTTACA+TGG | - | chr4_1:4903683-4903702 | Msa0530820:CDS | 20.0% |
| !!! | ATAGCTAAATATTTTTCATC+TGG | + | chr4_1:4903738-4903757 | None:intergenic | 20.0% |
| !!! | AATTAAATATTTTGCATCAC+TGG | + | chr4_1:4903941-4903960 | None:intergenic | 20.0% |
| !!! | TTTTCAAGGTTATTTTAGTT+CGG | + | chr4_1:4904182-4904201 | None:intergenic | 20.0% |
| !! | GTCTTAAATATTAGTGATTT+AGG | - | chr4_1:4904351-4904370 | Msa0530820:intron | 20.0% |
| !! | CTTAAATATTAGTGATTTAG+GGG | - | chr4_1:4904353-4904372 | Msa0530820:intron | 20.0% |
| !!! | TTGTTGATATGTTCATTTTT+AGG | - | chr4_1:4904591-4904610 | Msa0530820:intron | 20.0% |
| !! | AAAAGAAAAATTCATTGTGA+AGG | - | chr4_1:4904690-4904709 | Msa0530820:intron | 20.0% |
| !! | AAAGAAAAATTCATTGTGAA+GGG | - | chr4_1:4904691-4904710 | Msa0530820:intron | 20.0% |
| !!! | AATGTCACAATTTTTTTAGT+TGG | - | chr4_1:4904835-4904854 | Msa0530820:intron | 20.0% |
| !!! | ATGTCACAATTTTTTTAGTT+GGG | - | chr4_1:4904836-4904855 | Msa0530820:intron | 20.0% |
| !!! | ATATGTTCTTTTCAAAATTC+AGG | + | chr4_1:4905189-4905208 | None:intergenic | 20.0% |
| !!! | TTAGCTTTAATAAGACAATT+TGG | - | chr4_1:4905376-4905395 | Msa0530820:intron | 20.0% |
| !!! | TGCACTATTATTTTTTTGAA+TGG | - | chr4_1:4905482-4905501 | Msa0530820:intron | 20.0% |
| !! | ATTCAAAAAATAAATTGGAG+TGG | + | chr4_1:4905533-4905552 | None:intergenic | 20.0% |
| !! | TTATATCCATTATTGAATCT+AGG | - | chr4_1:4906027-4906046 | Msa0530820:intron | 20.0% |
| !!! | TTTTCTGTTAATAATCCTAA+AGG | + | chr4_1:4906330-4906349 | None:intergenic | 20.0% |
| !! | AGGATTATTAACAGAAAAAA+TGG | - | chr4_1:4906332-4906351 | Msa0530820:CDS | 20.0% |
| !! | GTTAATTATAACCATTTGTT+TGG | + | chr4_1:4906405-4906424 | None:intergenic | 20.0% |
| !!! | AATTATGATACTTGTTAAAG+GGG | + | chr4_1:4906427-4906446 | None:intergenic | 20.0% |
| !! | AAAAGAAAGAGAAAATAACT+TGG | + | chr4_1:4906456-4906475 | None:intergenic | 20.0% |
| !!! | TTATTTTCTCTTTCTTTTAC+AGG | - | chr4_1:4906458-4906477 | Msa0530820:intron | 20.0% |
| !!! | ATTGGTAATTTAAAAGACAT+GGG | + | chr4_1:4906712-4906731 | None:intergenic | 20.0% |
| !!! | AATTGGTAATTTAAAAGACA+TGG | + | chr4_1:4906713-4906732 | None:intergenic | 20.0% |
| !! | AGATATGAAATGCATATAAT+TGG | + | chr4_1:4906730-4906749 | None:intergenic | 20.0% |
| !! | GCACAATAAATAGATAAAAA+AGG | + | chr4_1:4907145-4907164 | None:intergenic | 20.0% |
| ! | TTAGGGTTTATGTGTTAATT+AGG | - | chr4_1:4900213-4900232 | Msa0530820:three_prime_UTR | 25.0% |
| !!! | GTTGTTTTCATTAACTATCT+CGG | + | chr4_1:4900475-4900494 | None:intergenic | 25.0% |
| !! | AATGTGGGTTTTTATTAATG+TGG | - | chr4_1:4900654-4900673 | Msa0530820:CDS | 25.0% |
| ! | TAGTTCAATGACTTAAAAAC+CGG | + | chr4_1:4900772-4900791 | None:intergenic | 25.0% |
| ! | CCCATAAAATATACGAAAAA+AGG | + | chr4_1:4900992-4901011 | None:intergenic | 25.0% |
| !!! | TTTGAACTTTTATAGTTCTG+TGG | - | chr4_1:4901253-4901272 | Msa0530820:CDS | 25.0% |
| ! | CAAAGTCTAATATCTGATTT+AGG | - | chr4_1:4901418-4901437 | Msa0530820:intron | 25.0% |
| !! | ATATCTGATTTAGGTGATTT+TGG | - | chr4_1:4901427-4901446 | Msa0530820:intron | 25.0% |
| !! | ATAAGTGTCTTGTCTAATTT+TGG | - | chr4_1:4901645-4901664 | Msa0530820:intron | 25.0% |
| !!! | TGACATCATTTTAGTTGAAT+AGG | + | chr4_1:4902034-4902053 | None:intergenic | 25.0% |
| !! | TGTTGCAAATAAGATTTTGT+TGG | - | chr4_1:4902125-4902144 | Msa0530820:CDS | 25.0% |
| !!! | CATCTTCTATTTTTCAGATT+TGG | - | chr4_1:4902206-4902225 | Msa0530820:CDS | 25.0% |
| ! | TGATATGATGAATATACCTT+GGG | + | chr4_1:4902397-4902416 | None:intergenic | 25.0% |
| ! | ATGATATGATGAATATACCT+TGG | + | chr4_1:4902398-4902417 | None:intergenic | 25.0% |
| ! | TGTTGTAATTAGCGTAAAAA+AGG | - | chr4_1:4902545-4902564 | Msa0530820:intron | 25.0% |
| ! | TAATTAGCGTAAAAAAGGTA+AGG | - | chr4_1:4902550-4902569 | Msa0530820:intron | 25.0% |
| ! | AATTAGCGTAAAAAAGGTAA+GGG | - | chr4_1:4902551-4902570 | Msa0530820:intron | 25.0% |
| ! | AAACATTGCTTCATTTCATA+GGG | + | chr4_1:4903062-4903081 | None:intergenic | 25.0% |
| ! | TAAACATTGCTTCATTTCAT+AGG | + | chr4_1:4903063-4903082 | None:intergenic | 25.0% |
| ! | CAATGTTTAATAAAATGCAC+TGG | - | chr4_1:4903074-4903093 | Msa0530820:intron | 25.0% |
| !!! | TATGAGTTTAATTCTGAAAC+AGG | - | chr4_1:4903562-4903581 | Msa0530820:CDS | 25.0% |
| !!! | ACTAAATTACTTTTGGATCT+TGG | - | chr4_1:4903653-4903672 | Msa0530820:CDS | 25.0% |
| ! | AACAAGATTAATTGTTAGGA+TGG | + | chr4_1:4903680-4903699 | None:intergenic | 25.0% |
| !!! | TTTTACTTTTATGCCTTAAC+AGG | - | chr4_1:4903891-4903910 | Msa0530820:CDS | 25.0% |
| !!! | TTTACTTTTATGCCTTAACA+GGG | - | chr4_1:4903892-4903911 | Msa0530820:CDS | 25.0% |
| !! | AAAGTAAACATCTTCAAGTT+TGG | - | chr4_1:4903974-4903993 | Msa0530820:intron | 25.0% |
| !! | ATATTTAAGACTGTAAACTG+TGG | + | chr4_1:4904342-4904361 | None:intergenic | 25.0% |
| !!! | ATGTTCATTTTTAGGATAGA+CGG | - | chr4_1:4904599-4904618 | Msa0530820:intron | 25.0% |
| ! | AGAAATAAGGGTAGAAAAAT+GGG | - | chr4_1:4904641-4904660 | Msa0530820:intron | 25.0% |
| ! | AAGAAAAATTCATTGTGAAG+GGG | - | chr4_1:4904692-4904711 | Msa0530820:intron | 25.0% |
| ! | ACAGTAATCTCAATTTCAAT+GGG | + | chr4_1:4905144-4905163 | None:intergenic | 25.0% |
| ! | AACAGTAATCTCAATTTCAA+TGG | + | chr4_1:4905145-4905164 | None:intergenic | 25.0% |
| ! | GCAAAGCATAAATAGATTAA+TGG | + | chr4_1:4905213-4905232 | None:intergenic | 25.0% |
| !! | TTTCCATATAGTTTTTGCTA+AGG | - | chr4_1:4905321-4905340 | Msa0530820:intron | 25.0% |
| ! | AAGATAAATCAACATGCAAA+TGG | + | chr4_1:4905419-4905438 | None:intergenic | 25.0% |
| ! | CAAAAAAATAATAGTGCAGA+TGG | + | chr4_1:4905480-4905499 | None:intergenic | 25.0% |
| !!! | AATTATTGGTGAAGTATTGA+TGG | - | chr4_1:4905556-4905575 | Msa0530820:CDS | 25.0% |
| !!! | TGAAGTATTGATGGTATTTT+TGG | - | chr4_1:4905565-4905584 | Msa0530820:CDS | 25.0% |
| ! | ATTTAATGTAGATCAATGTG+AGG | - | chr4_1:4905595-4905614 | Msa0530820:CDS | 25.0% |
| ! | TAAGAGAATTAAGTAGTTTG+AGG | + | chr4_1:4906010-4906029 | None:intergenic | 25.0% |
| ! | GTATTACCTAGATTCAATAA+TGG | + | chr4_1:4906036-4906055 | None:intergenic | 25.0% |
| !!! | GAATTTGTTGGTCAAAATTT+TGG | - | chr4_1:4906303-4906322 | Msa0530820:CDS | 25.0% |
| !! | TTTTCTTTCTTTCTCATTCT+AGG | - | chr4_1:4906520-4906539 | Msa0530820:intron | 25.0% |
| ! | TTTCTTTCTTTCTCATTCTA+GGG | - | chr4_1:4906521-4906540 | Msa0530820:intron | 25.0% |
| !!! | AACTTTTAAAGAAGATTCCT+GGG | + | chr4_1:4906616-4906635 | None:intergenic | 25.0% |
| !!! | AAACTTTTAAAGAAGATTCC+TGG | + | chr4_1:4906617-4906636 | None:intergenic | 25.0% |
| !!! | ATCTACAATTTTTGGGTAAT+TGG | - | chr4_1:4906876-4906895 | Msa0530820:intron | 25.0% |
| ! | GATTCAATTGTTCAACAAAT+TGG | - | chr4_1:4907021-4907040 | Msa0530820:intron | 25.0% |
| ! | ATTGAATGAAAACGTTATCA+TGG | - | chr4_1:4907758-4907777 | Msa0530820:five_prime_UTR | 25.0% |
| AAGAAAGAAAACAAACTCGA+AGG | + | chr4_1:4900012-4900031 | None:intergenic | 30.0% | |
| !! | ATAAGTTTTGTGAGACTGTA+TGG | - | chr4_1:4900382-4900401 | Msa0530820:CDS | 30.0% |
| CTTATCATTGTGTTATAAGC+TGG | - | chr4_1:4900564-4900583 | Msa0530820:intron | 30.0% | |
| ! | CATTTATTTCTTATTCGCGT+TGG | - | chr4_1:4900722-4900741 | Msa0530820:intron | 30.0% |
| !!! | TGCTCAGTTTTGTTGTTTTA+GGG | + | chr4_1:4900818-4900837 | None:intergenic | 30.0% |
| ! | AAGGCAGTAGAAATTTTCAA+TGG | + | chr4_1:4900912-4900931 | None:intergenic | 30.0% |
| TATACGAAAAAAGGAAAACC+TGG | + | chr4_1:4900983-4901002 | None:intergenic | 30.0% | |
| AATGCTTTGTCTATTTGACA+CGG | + | chr4_1:4901110-4901129 | None:intergenic | 30.0% | |
| ! | TTTTTATATGATGGTTGGCA+AGG | - | chr4_1:4901213-4901232 | Msa0530820:CDS | 30.0% |
| AGTTCTGTGGTCTATTATAT+TGG | - | chr4_1:4901266-4901285 | Msa0530820:CDS | 30.0% | |
| TTAACCTTCAAACAACAAAG+AGG | + | chr4_1:4901455-4901474 | None:intergenic | 30.0% | |
| TTTCATGAGCCATTTATGTT+AGG | - | chr4_1:4901622-4901641 | Msa0530820:intron | 30.0% | |
| GACACTTATCCTAACATAAA+TGG | + | chr4_1:4901634-4901653 | None:intergenic | 30.0% | |
| GTTGCTTAACAAATATTGCA+AGG | - | chr4_1:4901875-4901894 | Msa0530820:intron | 30.0% | |
| AAACTGCTTCCTTGAATTTA+CGG | - | chr4_1:4901944-4901963 | Msa0530820:intron | 30.0% | |
| ATTTCAGAACCGTAAATTCA+AGG | + | chr4_1:4901956-4901975 | None:intergenic | 30.0% | |
| AAAAAGATTTGTAGAGTGAC+GGG | + | chr4_1:4901996-4902015 | None:intergenic | 30.0% | |
| GAAAAAGATTTGTAGAGTGA+CGG | + | chr4_1:4901997-4902016 | None:intergenic | 30.0% | |
| ATATGATGAATATACCTTGG+GGG | + | chr4_1:4902395-4902414 | None:intergenic | 30.0% | |
| GATATGATGAATATACCTTG+GGG | + | chr4_1:4902396-4902415 | None:intergenic | 30.0% | |
| TAGATATTTACCTCTTCAGA+AGG | - | chr4_1:4902451-4902470 | Msa0530820:intron | 30.0% | |
| AGATATTTACCTCTTCAGAA+GGG | - | chr4_1:4902452-4902471 | Msa0530820:intron | 30.0% | |
| ATTCAAATGACAGAAATACC+CGG | + | chr4_1:4902672-4902691 | None:intergenic | 30.0% | |
| ! | TCATTCAAATGAGTGCTTTT+TGG | - | chr4_1:4902777-4902796 | Msa0530820:intron | 30.0% |
| TACAATGCATGGAGATTAAA+GGG | + | chr4_1:4902805-4902824 | None:intergenic | 30.0% | |
| ATACAATGCATGGAGATTAA+AGG | + | chr4_1:4902806-4902825 | None:intergenic | 30.0% | |
| !! | GTAAAAGTGTTAATTGACCT+TGG | - | chr4_1:4902856-4902875 | Msa0530820:CDS | 30.0% |
| TTAATTGACCTTGGTTATCT+TGG | - | chr4_1:4902865-4902884 | Msa0530820:CDS | 30.0% | |
| ! | AGACCAACTATAAGTCTTTT+GGG | + | chr4_1:4902944-4902963 | None:intergenic | 30.0% |
| TTGGTCTGAAAAAATCTCAT+GGG | - | chr4_1:4902957-4902976 | Msa0530820:intron | 30.0% | |
| ATAAAATGTGAACCAATGTC+TGG | - | chr4_1:4902991-4903010 | Msa0530820:intron | 30.0% | |
| TAAAATGTGAACCAATGTCT+GGG | - | chr4_1:4902992-4903011 | Msa0530820:intron | 30.0% | |
| ACATTAGAAATACTGCACAT+TGG | - | chr4_1:4903230-4903249 | Msa0530820:intron | 30.0% | |
| AAAGCAGCATAATCAACATA+TGG | + | chr4_1:4903399-4903418 | None:intergenic | 30.0% | |
| ATCCATATATCATCATACAG+TGG | - | chr4_1:4903472-4903491 | Msa0530820:CDS | 30.0% | |
| TCCATATATCATCATACAGT+GGG | - | chr4_1:4903473-4903492 | Msa0530820:CDS | 30.0% | |
| GGACTTTCATTTGCAAAAAA+AGG | - | chr4_1:4903502-4903521 | Msa0530820:CDS | 30.0% | |
| ! | GGTGTGTACTAAATTACTTT+TGG | - | chr4_1:4903646-4903665 | Msa0530820:CDS | 30.0% |
| TAGACTACGAGTTATAAGTT+GGG | - | chr4_1:4903767-4903786 | Msa0530820:CDS | 30.0% | |
| TGACACTTACCATATCATTA+GGG | + | chr4_1:4903818-4903837 | None:intergenic | 30.0% | |
| ATGACACTTACCATATCATT+AGG | + | chr4_1:4903819-4903838 | None:intergenic | 30.0% | |
| ! | GTAAGTGTCATTACTTATTG+TGG | - | chr4_1:4903828-4903847 | Msa0530820:CDS | 30.0% |
| ATAGCGAAAGTTCAAAGAAA+AGG | - | chr4_1:4904229-4904248 | Msa0530820:CDS | 30.0% | |
| ATGGAATTTGGATGCAATAA+AGG | + | chr4_1:4904262-4904281 | None:intergenic | 30.0% | |
| GAGAATGTGGTATTAAATGT+GGG | - | chr4_1:4904375-4904394 | Msa0530820:intron | 30.0% | |
| TTAGTATATCTGACCTTTCT+TGG | + | chr4_1:4904439-4904458 | None:intergenic | 30.0% | |
| ! | TTTTCTTACACCCTCATTTT+TGG | - | chr4_1:4904472-4904491 | Msa0530820:intron | 30.0% |
| CTAAATGGAACCAAAAATGA+GGG | + | chr4_1:4904485-4904504 | None:intergenic | 30.0% | |
| GTTCCATTTAGGTGATTATT+AGG | - | chr4_1:4904494-4904513 | Msa0530820:intron | 30.0% | |
| TCACCTAATAATCACCTAAA+TGG | + | chr4_1:4904500-4904519 | None:intergenic | 30.0% | |
| !!! | TGTTCATTTTTAGGATAGAC+GGG | - | chr4_1:4904600-4904619 | Msa0530820:intron | 30.0% |
| GAGAAATAAGGGTAGAAAAA+TGG | - | chr4_1:4904640-4904659 | Msa0530820:intron | 30.0% | |
| GAATAGGATCTCTACTTTAA+GGG | + | chr4_1:4904721-4904740 | None:intergenic | 30.0% | |
| TGAATAGGATCTCTACTTTA+AGG | + | chr4_1:4904722-4904741 | None:intergenic | 30.0% | |
| ! | GTTAGGTTATCTTTGTGTTT+TGG | - | chr4_1:4905094-4905113 | Msa0530820:intron | 30.0% |
| !! | GATTACTGTTTTATTGACAG+CGG | - | chr4_1:4905155-4905174 | Msa0530820:intron | 30.0% |
| !! | GAACTCACGATAGTTATTTT+AGG | - | chr4_1:4905246-4905265 | Msa0530820:CDS | 30.0% |
| ACACCTTAGCAAAAACTATA+TGG | + | chr4_1:4905327-4905346 | None:intergenic | 30.0% | |
| ! | TAAAGCTAATCATGAGTTGA+AGG | + | chr4_1:4905365-4905384 | None:intergenic | 30.0% |
| ATCCAAATGAGCAAACAATT+GGG | - | chr4_1:4905642-4905661 | Msa0530820:intron | 30.0% | |
| ACTGACTAATCTCAATTTAC+TGG | - | chr4_1:4905670-4905689 | Msa0530820:intron | 30.0% | |
| AGTTCATAATAACCTGCAAA+AGG | + | chr4_1:4905959-4905978 | None:intergenic | 30.0% | |
| AAGTAAGTTAAATGCTCCAT+GGG | + | chr4_1:4906107-4906126 | None:intergenic | 30.0% | |
| !! | AATTTTGACCAACAAATTCC+TGG | + | chr4_1:4906302-4906321 | None:intergenic | 30.0% |
| TTCTTTCTTTCTCATTCTAG+GGG | - | chr4_1:4906522-4906541 | Msa0530820:intron | 30.0% | |
| ! | TACAATGCTTTTCTTAAGCA+CGG | + | chr4_1:4906758-4906777 | None:intergenic | 30.0% |
| ATGAAAATAGTGTGTTGCAA+TGG | + | chr4_1:4906963-4906982 | None:intergenic | 30.0% | |
| AAAAGGCAAGAATTACTAGT+TGG | + | chr4_1:4907128-4907147 | None:intergenic | 30.0% | |
| TTGGAAGACAGATTTAAAAG+TGG | + | chr4_1:4907189-4907208 | None:intergenic | 30.0% | |
| !! | TTATGATCGACTTGTGTTTA+TGG | - | chr4_1:4907283-4907302 | Msa0530820:intron | 30.0% |
| GTTATCAATTGCTAATAGCT+GGG | + | chr4_1:4907571-4907590 | None:intergenic | 30.0% | |
| TGTTATCAATTGCTAATAGC+TGG | + | chr4_1:4907572-4907591 | None:intergenic | 30.0% | |
| CTGAAGATGTAAACTGTGAA+GGG | + | chr4_1:4900115-4900134 | None:intergenic | 35.0% | |
| ACCTTTGTTCCTAACCTTAA+AGG | - | chr4_1:4900173-4900192 | Msa0530820:three_prime_UTR | 35.0% | |
| CCTTTGTTCCTAACCTTAAA+GGG | - | chr4_1:4900174-4900193 | Msa0530820:three_prime_UTR | 35.0% | |
| !! | GAAAATGACCCTTTAAGGTT+AGG | + | chr4_1:4900185-4900204 | None:intergenic | 35.0% |
| TGTACGAAAATGACCCTTTA+AGG | + | chr4_1:4900190-4900209 | None:intergenic | 35.0% | |
| !! | TTAAAGGGTCATTTTCGTAC+AGG | - | chr4_1:4900189-4900208 | Msa0530820:three_prime_UTR | 35.0% |
| !! | GTCATTTTCGTACAGGTTTA+GGG | - | chr4_1:4900196-4900215 | Msa0530820:three_prime_UTR | 35.0% |
| ATAGCCCTAAGCATCATTAA+AGG | + | chr4_1:4900615-4900634 | None:intergenic | 35.0% | |
| TGGAAAATAAGCTGCTAATG+TGG | - | chr4_1:4900638-4900657 | Msa0530820:CDS | 35.0% | |
| GGAAAATAAGCTGCTAATGT+GGG | - | chr4_1:4900639-4900658 | Msa0530820:CDS | 35.0% | |
| AGACTTCTGAATTGGATCTT+AGG | - | chr4_1:4900745-4900764 | Msa0530820:intron | 35.0% | |
| !!! | CTGCTCAGTTTTGTTGTTTT+AGG | + | chr4_1:4900819-4900838 | None:intergenic | 35.0% |
| ! | CAAAGCTTACTTTGATTTCG+TGG | + | chr4_1:4900844-4900863 | None:intergenic | 35.0% |
| TTATCATTGAGTGACCCAAT+TGG | - | chr4_1:4901343-4901362 | Msa0530820:intron | 35.0% | |
| TATCATTGAGTGACCCAATT+GGG | - | chr4_1:4901344-4901363 | Msa0530820:intron | 35.0% | |
| TGTTTGAAGGTTAACTGAGA+TGG | - | chr4_1:4901461-4901480 | Msa0530820:intron | 35.0% | |
| GTTAAAGGAACCTGTTCTTA+CGG | - | chr4_1:4901494-4901513 | Msa0530820:intron | 35.0% | |
| CCAAACATCAAATGCAGAAA+GGG | + | chr4_1:4901595-4901614 | None:intergenic | 35.0% | |
| ACCAAACATCAAATGCAGAA+AGG | + | chr4_1:4901596-4901615 | None:intergenic | 35.0% | |
| GTAAATTCAAGGAAGCAGTT+TGG | + | chr4_1:4901945-4901964 | None:intergenic | 35.0% | |
| ATGCAAATTGATCGTTGGAT+TGG | + | chr4_1:4902102-4902121 | None:intergenic | 35.0% | |
| CAACAATGCAAATTGATCGT+TGG | + | chr4_1:4902107-4902126 | None:intergenic | 35.0% | |
| ! | CAGATTTGGAATACAAACAG+TGG | - | chr4_1:4902220-4902239 | Msa0530820:CDS | 35.0% |
| ATATCATGAACTCCATCTGA+TGG | + | chr4_1:4902268-4902287 | None:intergenic | 35.0% | |
| TTACTTTCTCCATTGTGTTG+TGG | - | chr4_1:4902513-4902532 | Msa0530820:intron | 35.0% | |
| TACTTTCTCCATTGTGTTGT+GGG | - | chr4_1:4902514-4902533 | Msa0530820:intron | 35.0% | |
| ! | TTACTTATTAGCTCTCGGAA+CGG | - | chr4_1:4902577-4902596 | Msa0530820:intron | 35.0% |
| TTCAAATGACAGAAATACCC+GGG | + | chr4_1:4902671-4902690 | None:intergenic | 35.0% | |
| AAGTTTCTCCAAGATAACCA+AGG | + | chr4_1:4902876-4902895 | None:intergenic | 35.0% | |
| ! | CAGACCAACTATAAGTCTTT+TGG | + | chr4_1:4902945-4902964 | None:intergenic | 35.0% |
| ! | GTTGGTCTGAAAAAATCTCA+TGG | - | chr4_1:4902956-4902975 | Msa0530820:intron | 35.0% |
| TCTGAAAAAATCTCATGGGT+GGG | - | chr4_1:4902961-4902980 | Msa0530820:intron | 35.0% | |
| TAGGGAAAATTCTTAGGCAA+TGG | + | chr4_1:4903039-4903058 | None:intergenic | 35.0% | |
| ATAGGGTAGGGAAAATTCTT+AGG | + | chr4_1:4903045-4903064 | None:intergenic | 35.0% | |
| TTGCTTCATTTCATAGGGTA+GGG | + | chr4_1:4903057-4903076 | None:intergenic | 35.0% | |
| ATTGCTTCATTTCATAGGGT+AGG | + | chr4_1:4903058-4903077 | None:intergenic | 35.0% | |
| ATTTATGCCAACCCTTTCTT+CGG | - | chr4_1:4903143-4903162 | Msa0530820:intron | 35.0% | |
| AGTGTATGAAACCGAAGAAA+GGG | + | chr4_1:4903157-4903176 | None:intergenic | 35.0% | |
| AGTCTATGTAATTGTGAACG+AGG | - | chr4_1:4903190-4903209 | Msa0530820:intron | 35.0% | |
| GTCTATGTAATTGTGAACGA+GGG | - | chr4_1:4903191-4903210 | Msa0530820:intron | 35.0% | |
| TCCCACTGTATGATGATATA+TGG | + | chr4_1:4903477-4903496 | None:intergenic | 35.0% | |
| ! | TTTGTGTTGTTGGACATGAT+GGG | - | chr4_1:4903533-4903552 | Msa0530820:CDS | 35.0% |
| AAAAAAGTCCATCTCTTCAC+TGG | - | chr4_1:4903612-4903631 | Msa0530820:CDS | 35.0% | |
| CTAGACTACGAGTTATAAGT+TGG | - | chr4_1:4903766-4903785 | Msa0530820:CDS | 35.0% | |
| CGATGTATATTTCCCTGTTA+AGG | + | chr4_1:4903907-4903926 | None:intergenic | 35.0% | |
| ! | GTAAACATCTTCAAGTTTGG+AGG | - | chr4_1:4903977-4903996 | Msa0530820:intron | 35.0% |
| TTAAGTTTAGGAACTGTGAG+TGG | - | chr4_1:4904006-4904025 | Msa0530820:intron | 35.0% | |
| TAAATCATCTTCATTGCCAC+CGG | + | chr4_1:4904082-4904101 | None:intergenic | 35.0% | |
| AATTTGAATGCCTCTTCTGA+AGG | - | chr4_1:4904147-4904166 | Msa0530820:intron | 35.0% | |
| ! | TTCGACTTTGTCTGTTTTCA+AGG | + | chr4_1:4904196-4904215 | None:intergenic | 35.0% |
| AGACAAAGTCGAAAGTGATA+AGG | - | chr4_1:4904203-4904222 | Msa0530820:CDS | 35.0% | |
| GGAGAATGTGGTATTAAATG+TGG | - | chr4_1:4904374-4904393 | Msa0530820:intron | 35.0% | |
| ATATCTGACCTTTCTTGGAA+AGG | + | chr4_1:4904434-4904453 | None:intergenic | 35.0% | |
| CCTAAATGGAACCAAAAATG+AGG | + | chr4_1:4904486-4904505 | None:intergenic | 35.0% | |
| !!! | CCTCATTTTTGGTTCCATTT+AGG | - | chr4_1:4904483-4904502 | Msa0530820:intron | 35.0% |
| TTGAAAAACAACTCCCACTA+GGG | + | chr4_1:4904562-4904581 | None:intergenic | 35.0% | |
| GTGAATGCATGATTGTGAAT+AGG | + | chr4_1:4904737-4904756 | None:intergenic | 35.0% | |
| CAAACTTTCTCCATCATCTT+TGG | - | chr4_1:4905072-4905091 | Msa0530820:intron | 35.0% | |
| TTTCTCCATCATCTTTGGTT+AGG | - | chr4_1:4905077-4905096 | Msa0530820:intron | 35.0% | |
| GATAACCTAACCAAAGATGA+TGG | + | chr4_1:4905085-4905104 | None:intergenic | 35.0% | |
| !! | TGTTTTGGATCCCATTTTCT+TGG | - | chr4_1:4905109-4905128 | Msa0530820:intron | 35.0% |
| GAGCAAAAGACCAAGAAAAT+GGG | + | chr4_1:4905122-4905141 | None:intergenic | 35.0% | |
| GATTACTCATCATACCAAAG+TGG | + | chr4_1:4905454-4905473 | None:intergenic | 35.0% | |
| AAATAAATTGGAGTGGAGTG+AGG | + | chr4_1:4905526-4905545 | None:intergenic | 35.0% | |
| GATCCAAATGAGCAAACAAT+TGG | - | chr4_1:4905641-4905660 | Msa0530820:intron | 35.0% | |
| TCCAAATGAGCAAACAATTG+GGG | - | chr4_1:4905643-4905662 | Msa0530820:intron | 35.0% | |
| ATAAACACAGTTCAGTACAC+AGG | + | chr4_1:4905885-4905904 | None:intergenic | 35.0% | |
| AGATAAGTGATCGAGAAAGT+GGG | + | chr4_1:4905925-4905944 | None:intergenic | 35.0% | |
| ATTAAGTAGTTTGAGGACGT+TGG | + | chr4_1:4906003-4906022 | None:intergenic | 35.0% | |
| CAAGTAAGTTAAATGCTCCA+TGG | + | chr4_1:4906108-4906127 | None:intergenic | 35.0% | |
| ! | CATGGAGCATTTAACTTACT+TGG | - | chr4_1:4906106-4906125 | Msa0530820:intron | 35.0% |
| ! | AGTTTTCCATCTTGCTTGTA+AGG | - | chr4_1:4906179-4906198 | Msa0530820:intron | 35.0% |
| ! | GTTTTCCATCTTGCTTGTAA+GGG | - | chr4_1:4906180-4906199 | Msa0530820:intron | 35.0% |
| GCTTTCTCTACGAAAATCAA+TGG | + | chr4_1:4906245-4906264 | None:intergenic | 35.0% | |
| !! | GGTCAAAATTTTGGTCCTTT+AGG | - | chr4_1:4906312-4906331 | Msa0530820:CDS | 35.0% |
| TTTAGCAGCAACCAAACAAA+TGG | - | chr4_1:4906391-4906410 | Msa0530820:intron | 35.0% | |
| ! | GGGTAATTGGTAGTTATCTT+AGG | - | chr4_1:4906889-4906908 | Msa0530820:intron | 35.0% |
| TGCTACAATACAGTATGACA+AGG | - | chr4_1:4906932-4906951 | Msa0530820:intron | 35.0% | |
| ATACTTGACATGCTTGTGAA+AGG | - | chr4_1:4907073-4907092 | Msa0530820:intron | 35.0% | |
| TGTCTAAGAAACTTGAGAGT+TGG | + | chr4_1:4907208-4907227 | None:intergenic | 35.0% | |
| TTCTTAGACATCCTTTACAC+CGG | - | chr4_1:4907218-4907237 | Msa0530820:intron | 35.0% | |
| TTCTTTCTGCTGTCTACAAA+TGG | - | chr4_1:4907248-4907267 | Msa0530820:intron | 35.0% | |
| AACAGTGCCAATTATCTATG+TGG | - | chr4_1:4907356-4907375 | Msa0530820:intron | 35.0% | |
| ACTGACAAAGATAGCAAAGA+AGG | - | chr4_1:4907420-4907439 | Msa0530820:intron | 35.0% | |
| CTGACAAAGATAGCAAAGAA+GGG | - | chr4_1:4907421-4907440 | Msa0530820:intron | 35.0% | |
| TGACAAAGATAGCAAAGAAG+GGG | - | chr4_1:4907422-4907441 | Msa0530820:intron | 35.0% | |
| GATAATCTTAGTGACGTTGA+AGG | - | chr4_1:4907465-4907484 | Msa0530820:intron | 35.0% | |
| AAAGAACCAAAAACGTGTAC+AGG | + | chr4_1:4907524-4907543 | None:intergenic | 35.0% | |
| TGTGGACAAGCAAATGTATA+TGG | + | chr4_1:4907658-4907677 | None:intergenic | 35.0% | |
| CCTGAAGATGTAAACTGTGA+AGG | + | chr4_1:4900116-4900135 | None:intergenic | 40.0% | |
| CCTTCACAGTTTACATCTTC+AGG | - | chr4_1:4900113-4900132 | Msa0530820:three_prime_UTR | 40.0% | |
| TAGGAACAAAGGTTCAATGG+AGG | + | chr4_1:4900166-4900185 | None:intergenic | 40.0% | |
| GGTTAGGAACAAAGGTTCAA+TGG | + | chr4_1:4900169-4900188 | None:intergenic | 40.0% | |
| !! | CCCTTTAAGGTTAGGAACAA+AGG | + | chr4_1:4900177-4900196 | None:intergenic | 40.0% |
| !! | GGTCATTTTCGTACAGGTTT+AGG | - | chr4_1:4900195-4900214 | Msa0530820:three_prime_UTR | 40.0% |
| GCATCATTAAAGGCCCTATT+TGG | + | chr4_1:4900605-4900624 | None:intergenic | 40.0% | |
| TAGGGCCTTTAATGATGCTT+AGG | - | chr4_1:4900607-4900626 | Msa0530820:CDS | 40.0% | |
| AGGGCCTTTAATGATGCTTA+GGG | - | chr4_1:4900608-4900627 | Msa0530820:CDS | 40.0% | |
| ATGATGCTTAGGGCTATATG+TGG | - | chr4_1:4900618-4900637 | Msa0530820:CDS | 40.0% | |
| TCTGAATTGGATCTTAGGTC+CGG | - | chr4_1:4900750-4900769 | Msa0530820:intron | 40.0% | |
| !! | GGTACCTCTTTGTTGTTTGA+AGG | - | chr4_1:4901448-4901467 | Msa0530820:intron | 40.0% |
| AAGGTTAACTGAGATGGTGA+AGG | - | chr4_1:4901467-4901486 | Msa0530820:intron | 40.0% | |
| AGGTTAACTGAGATGGTGAA+GGG | - | chr4_1:4901468-4901487 | Msa0530820:intron | 40.0% | |
| GATGGTGAAGGGTAAGTTAA+AGG | - | chr4_1:4901479-4901498 | Msa0530820:intron | 40.0% | |
| ATAGCTGCATAGTCACCATT+AGG | + | chr4_1:4901528-4901547 | None:intergenic | 40.0% | |
| CAGCTATTCTGTCTGCAAAT+GGG | - | chr4_1:4901541-4901560 | Msa0530820:intron | 40.0% | |
| TATTCTGTCTGCAAATGGGA+CGG | - | chr4_1:4901545-4901564 | Msa0530820:intron | 40.0% | |
| AAATGCAGAAAGGGAGATGA+AGG | + | chr4_1:4901586-4901605 | None:intergenic | 40.0% | |
| CCCTTTCTGCATTTGATGTT+TGG | - | chr4_1:4901592-4901611 | Msa0530820:intron | 40.0% | |
| TGTATTGCATGCAGTTTCAC+TGG | - | chr4_1:4902298-4902317 | Msa0530820:intron | 40.0% | |
| GTATTGCATGCAGTTTCACT+GGG | - | chr4_1:4902299-4902318 | Msa0530820:intron | 40.0% | |
| ATGCAGTTTCACTGGGATAA+AGG | - | chr4_1:4902306-4902325 | Msa0530820:intron | 40.0% | |
| TAATTTCATCAAAGCCCCCA+AGG | - | chr4_1:4902378-4902397 | Msa0530820:intron | 40.0% | |
| ! | GGACCTTACTTATTAGCTCT+CGG | - | chr4_1:4902572-4902591 | Msa0530820:intron | 40.0% |
| GTTCCGAGAGCTAATAAGTA+AGG | + | chr4_1:4902578-4902597 | None:intergenic | 40.0% | |
| GGAGAAACTTGAGCATTCTT+TGG | - | chr4_1:4902886-4902905 | Msa0530820:intron | 40.0% | |
| GGACCCAAAAGACTTATAGT+TGG | - | chr4_1:4902938-4902957 | Msa0530820:intron | 40.0% | |
| GTCTGAAAAAATCTCATGGG+TGG | - | chr4_1:4902960-4902979 | Msa0530820:intron | 40.0% | |
| TATGAAACCGAAGAAAGGGT+TGG | + | chr4_1:4903153-4903172 | None:intergenic | 40.0% | |
| CAGTGTATGAAACCGAAGAA+AGG | + | chr4_1:4903158-4903177 | None:intergenic | 40.0% | |
| CTTTCTTCGGTTTCATACAC+TGG | - | chr4_1:4903156-4903175 | Msa0530820:intron | 40.0% | |
| TCATCATACAGTGGGATTTG+CGG | - | chr4_1:4903481-4903500 | Msa0530820:CDS | 40.0% | |
| ! | CTTTGTGTTGTTGGACATGA+TGG | - | chr4_1:4903532-4903551 | Msa0530820:CDS | 40.0% |
| TGAAACAGGAGAGCTTCTAA+AGG | - | chr4_1:4903576-4903595 | Msa0530820:CDS | 40.0% | |
| ! | CGAGTTATAAGTTGGGAAAC+TGG | - | chr4_1:4903774-4903793 | Msa0530820:CDS | 40.0% |
| AAGTTGGGAAACTGGTAAAG+AGG | - | chr4_1:4903782-4903801 | Msa0530820:CDS | 40.0% | |
| ! | TCTGAAGTGCCCTAATGATA+TGG | - | chr4_1:4903806-4903825 | Msa0530820:CDS | 40.0% |
| ! | TGGAGGTGTGACTTAAGTTT+AGG | - | chr4_1:4903994-4904013 | Msa0530820:intron | 40.0% |
| CTTCAGGTGGAACTTACATA+TGG | - | chr4_1:4904121-4904140 | Msa0530820:intron | 40.0% | |
| TGCATCCAAATTCCATTCCA+TGG | - | chr4_1:4904266-4904285 | Msa0530820:CDS | 40.0% | |
| GCATCCAAATTCCATTCCAT+GGG | - | chr4_1:4904267-4904286 | Msa0530820:CDS | 40.0% | |
| CATCCAAATTCCATTCCATG+GGG | - | chr4_1:4904268-4904287 | Msa0530820:CDS | 40.0% | |
| ATCCAAATTCCATTCCATGG+GGG | - | chr4_1:4904269-4904288 | Msa0530820:CDS | 40.0% | |
| !! | ATGCAAGCTGTGTTGACTTA+TGG | - | chr4_1:4904303-4904322 | Msa0530820:CDS | 40.0% |
| TAGTGATTTAGGGGAGAATG+TGG | - | chr4_1:4904362-4904381 | Msa0530820:intron | 40.0% | |
| ! | AAATACTTTTCCTGCCCTAG+TGG | - | chr4_1:4904545-4904564 | Msa0530820:intron | 40.0% |
| ! | AATACTTTTCCTGCCCTAGT+GGG | - | chr4_1:4904546-4904565 | Msa0530820:intron | 40.0% |
| GTTGAAAAACAACTCCCACT+AGG | + | chr4_1:4904563-4904582 | None:intergenic | 40.0% | |
| !! | TCTTATTTCTGTCTGTCGCT+TGG | - | chr4_1:4904911-4904930 | Msa0530820:intron | 40.0% |
| ACTGAAAGCAGCAGTAGAAA+AGG | - | chr4_1:4904935-4904954 | Msa0530820:intron | 40.0% | |
| ! | ACAACTGACAAGGTGGATTT+GGG | - | chr4_1:4905011-4905030 | Msa0530820:intron | 40.0% |
| GGAGCAAAAGACCAAGAAAA+TGG | + | chr4_1:4905123-4905142 | None:intergenic | 40.0% | |
| TTCAAATGTGCGTACCACTT+TGG | - | chr4_1:4905437-4905456 | Msa0530820:intron | 40.0% | |
| GATCAATGTGAGGTTGTTGA+TGG | - | chr4_1:4905605-4905624 | Msa0530820:intron | 40.0% | |
| GCTCATTTGGATCATCATCA+AGG | + | chr4_1:4905634-4905653 | None:intergenic | 40.0% | |
| TCCCCAATTGTTTGCTCATT+TGG | + | chr4_1:4905647-4905666 | None:intergenic | 40.0% | |
| ! | AACTTGCTCTTTGTCACTCT+TGG | + | chr4_1:4905741-4905760 | None:intergenic | 40.0% |
| ACATCTACACTATCTGCACT+TGG | + | chr4_1:4905776-4905795 | None:intergenic | 40.0% | |
| GTACAAGCAATCCAGAAGAA+GGG | + | chr4_1:4905834-4905853 | None:intergenic | 40.0% | |
| TGTACAAGCAATCCAGAAGA+AGG | + | chr4_1:4905835-4905854 | None:intergenic | 40.0% | |
| CAGATAAGTGATCGAGAAAG+TGG | + | chr4_1:4905926-4905945 | None:intergenic | 40.0% | |
| GTTAACAGCCAGGAATTTGT+TGG | - | chr4_1:4906291-4906310 | Msa0530820:CDS | 40.0% | |
| !! | TCATTCTAGGGGTGCAATTT+TGG | - | chr4_1:4906533-4906552 | Msa0530820:intron | 40.0% |
| AGAAGTAGACATTTCAGCCA+TGG | + | chr4_1:4906570-4906589 | None:intergenic | 40.0% | |
| TTCAAGTGAGTTCTGCATGA+TGG | - | chr4_1:4906649-4906668 | Msa0530820:intron | 40.0% | |
| GGCAAGAATTACTAGTTGGT+TGG | + | chr4_1:4907124-4907143 | None:intergenic | 40.0% | |
| TCTTAGACATCCTTTACACC+GGG | - | chr4_1:4907219-4907238 | Msa0530820:intron | 40.0% | |
| GTGCTTGGTTTCTGTTGAAT+AGG | - | chr4_1:4907305-4907324 | Msa0530820:intron | 40.0% | |
| GCCAATTATCTATGTGGACA+CGG | - | chr4_1:4907362-4907381 | Msa0530820:intron | 40.0% | |
| TCCGTGTCCACATAGATAAT+TGG | + | chr4_1:4907366-4907385 | None:intergenic | 40.0% | |
| ! | TGATAGTGAAAGAGAATCCG+AGG | - | chr4_1:4907386-4907405 | Msa0530820:intron | 40.0% |
| TGAAGGTAGTGATGGTATGA+TGG | - | chr4_1:4907482-4907501 | Msa0530820:intron | 40.0% | |
| TGCTAATAGCTGGGACTTAA+TGG | + | chr4_1:4907562-4907581 | None:intergenic | 40.0% | |
| CTCAAAACTGTGATGCTTTG+TGG | + | chr4_1:4907676-4907695 | None:intergenic | 40.0% | |
| AGATGTAAACTGTGAAGGGC+CGG | + | chr4_1:4900111-4900130 | None:intergenic | 45.0% | |
| GTTCAATGGAGGAGTAACGA+GGG | + | chr4_1:4900155-4900174 | None:intergenic | 45.0% | |
| ! | TACTGCCTTGTTAACGCAAC+TGG | - | chr4_1:4900923-4900942 | Msa0530820:intron | 45.0% |
| GAAGTCCAGTTGCGTTAACA+AGG | + | chr4_1:4900931-4900950 | None:intergenic | 45.0% | |
| AAACAGTGCGAAAGTCATCC+AGG | - | chr4_1:4900962-4900981 | Msa0530820:intron | 45.0% | |
| TCCAAACCAAGAGCCCAATT+GGG | + | chr4_1:4901360-4901379 | None:intergenic | 45.0% | |
| ATCCAAACCAAGAGCCCAAT+TGG | + | chr4_1:4901361-4901380 | None:intergenic | 45.0% | |
| CTTACGGCTTTCACACCTAA+TGG | - | chr4_1:4901510-4901529 | Msa0530820:intron | 45.0% | |
| GCAGCTATTCTGTCTGCAAA+TGG | - | chr4_1:4901540-4901559 | Msa0530820:intron | 45.0% | |
| !! | GTGGAGATTTGTTAGCAGAG+TGG | - | chr4_1:4902239-4902258 | Msa0530820:intron | 45.0% |
| TCACTGGGATAAAGGTAGTG+TGG | - | chr4_1:4902314-4902333 | Msa0530820:intron | 45.0% | |
| ! | CATTGTTTGCCCTTCTGAAG+AGG | + | chr4_1:4902464-4902483 | None:intergenic | 45.0% |
| TAAAGCAGCCCACAACACAA+TGG | + | chr4_1:4902525-4902544 | None:intergenic | 45.0% | |
| TTGATGTTTCCACTGGTGAG+AGG | - | chr4_1:4902621-4902640 | Msa0530820:intron | 45.0% | |
| TGACAGAAATACCCGGGAAT+CGG | + | chr4_1:4902665-4902684 | None:intergenic | 45.0% | |
| CTGCATGAATACCCAGACAT+TGG | + | chr4_1:4903006-4903025 | None:intergenic | 45.0% | |
| ATGGACGTCACTTGTGAAAC+TGG | + | chr4_1:4903380-4903399 | None:intergenic | 45.0% | |
| GGACAGCTTCTTTGTGTTGT+TGG | - | chr4_1:4903523-4903542 | Msa0530820:CDS | 45.0% | |
| ! | TGTTGTTGGACATGATGGGA+AGG | - | chr4_1:4903537-4903556 | Msa0530820:CDS | 45.0% |
| TGAGAAAGCCAGTGAAGAGA+TGG | + | chr4_1:4903623-4903642 | None:intergenic | 45.0% | |
| !! | TCTTCACTGGCTTTCTCACA+TGG | - | chr4_1:4903625-4903644 | Msa0530820:CDS | 45.0% |
| AGTTTAGGAACTGTGAGTGG+TGG | - | chr4_1:4904009-4904028 | Msa0530820:intron | 45.0% | |
| GAGTGGCAATCAAGAACCAA+TGG | + | chr4_1:4904060-4904079 | None:intergenic | 45.0% | |
| ! | TTGGTTCTTGATTGCCACTC+CGG | - | chr4_1:4904060-4904079 | Msa0530820:CDS | 45.0% |
| GTGTACTTGACCTTCAGAAG+AGG | + | chr4_1:4904160-4904179 | None:intergenic | 45.0% | |
| TTCCCCCATGGAATGGAATT+TGG | + | chr4_1:4904274-4904293 | None:intergenic | 45.0% | |
| AAGGCTGTCATGCTTCTGAA+TGG | + | chr4_1:4904415-4904434 | None:intergenic | 45.0% | |
| CATGACAGCCTTTCCAAGAA+AGG | - | chr4_1:4904423-4904442 | Msa0530820:intron | 45.0% | |
| CAAATCCACCTTGTCAGTTG+TGG | + | chr4_1:4905012-4905031 | None:intergenic | 45.0% | |
| ! | CACAACTGACAAGGTGGATT+TGG | - | chr4_1:4905010-4905029 | Msa0530820:intron | 45.0% |
| ATCCAAGAATGACACAGAGC+TGG | - | chr4_1:4905703-4905722 | Msa0530820:intron | 45.0% | |
| ! | ATCCAGCTCTGTGTCATTCT+TGG | + | chr4_1:4905708-4905727 | None:intergenic | 45.0% |
| TCTACACTATCTGCACTTGG+AGG | + | chr4_1:4905773-4905792 | None:intergenic | 45.0% | |
| CTTGTACACGCAAGATGAGA+AGG | - | chr4_1:4905847-4905866 | Msa0530820:intron | 45.0% | |
| ! | TGTGATGCAACTCCTTTTGC+AGG | - | chr4_1:4905944-4905963 | Msa0530820:intron | 45.0% |
| GTAGTTTGAGGACGTTGGAT+GGG | + | chr4_1:4905998-4906017 | None:intergenic | 45.0% | |
| AGTAGTTTGAGGACGTTGGA+TGG | + | chr4_1:4905999-4906018 | None:intergenic | 45.0% | |
| TGGCAGATGTCTTACATGAG+TGG | - | chr4_1:4906126-4906145 | Msa0530820:intron | 45.0% | |
| TTCCATCTTGCTTGTAAGGG+AGG | - | chr4_1:4906183-4906202 | Msa0530820:intron | 45.0% | |
| TCCATCTTGCTTGTAAGGGA+GGG | - | chr4_1:4906184-4906203 | Msa0530820:intron | 45.0% | |
| GCAAAGAGATGATACTCTCC+TGG | - | chr4_1:4906269-4906288 | Msa0530820:intron | 45.0% | |
| CAAATTCCTGGCTGTTAACC+AGG | + | chr4_1:4906290-4906309 | None:intergenic | 45.0% | |
| ! | TTTTGGCATGTGCTCTTCCA+TGG | - | chr4_1:4906550-4906569 | Msa0530820:intron | 45.0% |
| CTACTTCTACAGCATGCAAG+TGG | - | chr4_1:4906582-4906601 | Msa0530820:intron | 45.0% | |
| TGCAAGTGGAATAATGTCCC+AGG | - | chr4_1:4906596-4906615 | Msa0530820:intron | 45.0% | |
| CTTAGACATCCTTTACACCG+GGG | - | chr4_1:4907220-4907239 | Msa0530820:intron | 45.0% | |
| CGACTTGTGTTTATGGTGCT+TGG | - | chr4_1:4907290-4907309 | Msa0530820:intron | 45.0% | |
| TGTTGAATAGGTGCTTGACG+AGG | - | chr4_1:4907317-4907336 | Msa0530820:intron | 45.0% | |
| GCTATCTTTGTCAGTGTCCA+TGG | + | chr4_1:4907415-4907434 | None:intergenic | 45.0% | |
| AGTGACGTTGAAGGTAGTGA+TGG | - | chr4_1:4907474-4907493 | Msa0530820:intron | 45.0% | |
| ! | ATGTCGCCTGTACACGTTTT+TGG | - | chr4_1:4907515-4907534 | Msa0530820:intron | 45.0% |
| GAGGAGTAACGAGGGAGAAA+GGG | + | chr4_1:4900147-4900166 | None:intergenic | 50.0% | |
| GGTTCAATGGAGGAGTAACG+AGG | + | chr4_1:4900156-4900175 | None:intergenic | 50.0% | |
| CGCGTTGGAGACTTCTGAAT+TGG | - | chr4_1:4900737-4900756 | Msa0530820:intron | 50.0% | |
| ACCCAATTGGGCTCTTGGTT+TGG | - | chr4_1:4901356-4901375 | Msa0530820:intron | 50.0% | |
| GGTGTGAAAGCCGTAAGAAC+AGG | + | chr4_1:4901507-4901526 | None:intergenic | 50.0% | |
| ! | TTAGCTCTCGGAACGGAAGA+TGG | - | chr4_1:4902584-4902603 | Msa0530820:intron | 50.0% |
| CTCGCTGTTGATGTTTCCAC+TGG | - | chr4_1:4902614-4902633 | Msa0530820:intron | 50.0% | |
| TTTCCACTGGTGAGAGGAAG+TGG | - | chr4_1:4902627-4902646 | Msa0530820:intron | 50.0% | |
| CCTACTAGTCATCCGATTCC+CGG | - | chr4_1:4902650-4902669 | Msa0530820:intron | 50.0% | |
| CTACTAGTCATCCGATTCCC+GGG | - | chr4_1:4902651-4902670 | Msa0530820:intron | 50.0% | |
| ACCAATGGAGCATGCCTCAA+GGG | + | chr4_1:4904045-4904064 | None:intergenic | 50.0% | |
| AACCAATGGAGCATGCCTCA+AGG | + | chr4_1:4904046-4904065 | None:intergenic | 50.0% | |
| GTCTCAGCAGTTACGTCTTC+AGG | - | chr4_1:4904105-4904124 | Msa0530820:intron | 50.0% | |
| TCAGCAGTTACGTCTTCAGG+TGG | - | chr4_1:4904108-4904127 | Msa0530820:intron | 50.0% | |
| TTCCATTCCATGGGGGAAGA+CGG | - | chr4_1:4904276-4904295 | Msa0530820:CDS | 50.0% | |
| AAAACAACTCCCACTAGGGC+AGG | + | chr4_1:4904558-4904577 | None:intergenic | 50.0% | |
| AGCAATCCAGAAGAAGGGTG+CGG | + | chr4_1:4905829-4905848 | None:intergenic | 50.0% | |
| TATGCCAGACAGTGTTCCCA+TGG | - | chr4_1:4906088-4906107 | Msa0530820:intron | 50.0% | |
| CCATCTTGCTTGTAAGGGAG+GGG | - | chr4_1:4906185-4906204 | Msa0530820:intron | 50.0% | |
| CATCTTGCTTGTAAGGGAGG+GGG | - | chr4_1:4906186-4906205 | Msa0530820:intron | 50.0% | |
| TACTCTCCTGGTTAACAGCC+AGG | - | chr4_1:4906281-4906300 | Msa0530820:CDS | 50.0% | |
| AGAAGCTTACCCCGGTGTAA+AGG | + | chr4_1:4907232-4907251 | None:intergenic | 50.0% | |
| CAGCAGAAAGAAGCTTACCC+CGG | + | chr4_1:4907240-4907259 | None:intergenic | 50.0% | |
| TGAATAGGTGCTTGACGAGG+AGG | - | chr4_1:4907320-4907339 | Msa0530820:intron | 50.0% | |
| AAGAGAATCCGAGGATGCCA+TGG | - | chr4_1:4907395-4907414 | Msa0530820:intron | 50.0% | |
| GGAGGAGTAACGAGGGAGAA+AGG | + | chr4_1:4900148-4900167 | None:intergenic | 55.0% | |
| GAGTGACCCAATTGGGCTCT+TGG | - | chr4_1:4901351-4901370 | Msa0530820:intron | 55.0% | |
| GCAGAGTGGAAGCCATCAGA+TGG | - | chr4_1:4902253-4902272 | Msa0530820:intron | 55.0% | |
| CCGGGAATCGGATGACTAGT+AGG | + | chr4_1:4902653-4902672 | None:intergenic | 55.0% | |
| GTGGTCCAACACTACCCTTG+AGG | - | chr4_1:4904028-4904047 | Msa0530820:CDS | 55.0% | |
| GCATGCCTCAAGGGTAGTGT+TGG | + | chr4_1:4904036-4904055 | None:intergenic | 55.0% | |
| ACCCTTGAGGCATGCTCCAT+TGG | - | chr4_1:4904041-4904060 | Msa0530820:CDS | 55.0% | |
| GTTCTTGATTGCCACTCCGG+TGG | - | chr4_1:4904063-4904082 | Msa0530820:CDS | 55.0% | |
| CATCTTCATTGCCACCGGAG+TGG | + | chr4_1:4904077-4904096 | None:intergenic | 55.0% | |
| GAGTGGAGTGAGGAAGTCGA+GGG | + | chr4_1:4905516-4905535 | None:intergenic | 55.0% | |
| AGATGACCGCACCCTTCTTC+TGG | - | chr4_1:4905820-4905839 | Msa0530820:intron | 55.0% | |
| TGCTCCATGGGAACACTGTC+TGG | + | chr4_1:4906095-4906114 | None:intergenic | 55.0% | |
| CCCCTCCCTTACAAGCAAGA+TGG | + | chr4_1:4906188-4906207 | None:intergenic | 55.0% | |
| CTTGTAAGGGAGGGGGAAAG+AGG | - | chr4_1:4906193-4906212 | Msa0530820:intron | 55.0% | |
| GTCAGTGTCCATGGCATCCT+CGG | + | chr4_1:4907406-4907425 | None:intergenic | 55.0% | |
| TGAAGGGCCGGATGTGTGTG+CGG | + | chr4_1:4900099-4900118 | None:intergenic | 60.0% | |
| AGGCCACTTCCTCTCACCAG+TGG | + | chr4_1:4902633-4902652 | None:intergenic | 60.0% | |
| GTCCGTCTTCCCCCATGGAA+TGG | + | chr4_1:4904281-4904300 | None:intergenic | 60.0% | |
| CATCTGTCCGTCTTCCCCCA+TGG | + | chr4_1:4904286-4904305 | None:intergenic | 60.0% | |
| GGAGTGGAGTGAGGAAGTCG+AGG | + | chr4_1:4905517-4905536 | None:intergenic | 60.0% | |
| TGTGTGCGGCGGACCGGACA+GGG | + | chr4_1:4900085-4900104 | None:intergenic | 70.0% | |
| CGGATGTGTGTGCGGCGGAC+CGG | + | chr4_1:4900091-4900110 | None:intergenic | 70.0% | |
| CGGTCCGCCGCACACACATC+CGG | - | chr4_1:4900089-4900108 | Msa0530820:three_prime_UTR | 70.0% | |
| AGGGCCGGATGTGTGTGCGG+CGG | + | chr4_1:4900096-4900115 | None:intergenic | 70.0% | |
| TCCCGCCGCCACTCCCTGTC+CGG | - | chr4_1:4900069-4900088 | Msa0530820:three_prime_UTR | 75.0% | |
| ACCGGACAGGGAGTGGCGGC+GGG | + | chr4_1:4900073-4900092 | None:intergenic | 75.0% | |
| GACCGGACAGGGAGTGGCGG+CGG | + | chr4_1:4900074-4900093 | None:intergenic | 75.0% | |
| GCGGACCGGACAGGGAGTGG+CGG | + | chr4_1:4900077-4900096 | None:intergenic | 75.0% | |
| GTGTGTGCGGCGGACCGGAC+AGG | + | chr4_1:4900086-4900105 | None:intergenic | 75.0% | |
| ! | GCGGCGGACCGGACAGGGAG+TGG | + | chr4_1:4900080-4900099 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 4900006 | 4907839 | 4900006 | ID=Msa0530820;Name=Msa0530820 |
| chr4_1 | mRNA | 4900006 | 4907839 | 4900006 | ID=Msa0530820-mRNA-1;Parent=Msa0530820;Name=Msa0530820-mRNA-1;_AED=0.03;_eAED=0.03;_QI=169|1|1|1|0.91|0.84|13|327|631 |
| chr4_1 | exon | 4900006 | 4900518 | 4900006 | ID=Msa0530820-mRNA-1:exon:1508;Parent=Msa0530820-mRNA-1 |
| chr4_1 | exon | 4900604 | 4900678 | 4900604 | ID=Msa0530820-mRNA-1:exon:1507;Parent=Msa0530820-mRNA-1 |
| chr4_1 | exon | 4901192 | 4901303 | 4901192 | ID=Msa0530820-mRNA-1:exon:1506;Parent=Msa0530820-mRNA-1 |
| chr4_1 | exon | 4901797 | 4901879 | 4901797 | ID=Msa0530820-mRNA-1:exon:1505;Parent=Msa0530820-mRNA-1 |
| chr4_1 | exon | 4901977 | 4902239 | 4901977 | ID=Msa0530820-mRNA-1:exon:1504;Parent=Msa0530820-mRNA-1 |
| chr4_1 | exon | 4902813 | 4902899 | 4902813 | ID=Msa0530820-mRNA-1:exon:1503;Parent=Msa0530820-mRNA-1 |
| chr4_1 | exon | 4903401 | 4903932 | 4903401 | ID=Msa0530820-mRNA-1:exon:1502;Parent=Msa0530820-mRNA-1 |
| chr4_1 | exon | 4904018 | 4904106 | 4904018 | ID=Msa0530820-mRNA-1:exon:1501;Parent=Msa0530820-mRNA-1 |
| chr4_1 | exon | 4904199 | 4904353 | 4904199 | ID=Msa0530820-mRNA-1:exon:1500;Parent=Msa0530820-mRNA-1 |
| chr4_1 | exon | 4905173 | 4905288 | 4905173 | ID=Msa0530820-mRNA-1:exon:1499;Parent=Msa0530820-mRNA-1 |
| chr4_1 | exon | 4905518 | 4905622 | 4905518 | ID=Msa0530820-mRNA-1:exon:1498;Parent=Msa0530820-mRNA-1 |
| chr4_1 | exon | 4906273 | 4906405 | 4906273 | ID=Msa0530820-mRNA-1:exon:1497;Parent=Msa0530820-mRNA-1 |
| chr4_1 | exon | 4907711 | 4907839 | 4907711 | ID=Msa0530820-mRNA-1:exon:1496;Parent=Msa0530820-mRNA-1 |
| chr4_1 | five_prime_UTR | 4907711 | 4907839 | 4907711 | ID=Msa0530820-mRNA-1:five_prime_utr;Parent=Msa0530820-mRNA-1 |
| chr4_1 | five_prime_UTR | 4906366 | 4906405 | 4906366 | ID=Msa0530820-mRNA-1:five_prime_utr;Parent=Msa0530820-mRNA-1 |
| chr4_1 | CDS | 4906273 | 4906365 | 4906273 | ID=Msa0530820-mRNA-1:cds;Parent=Msa0530820-mRNA-1 |
| chr4_1 | CDS | 4905518 | 4905622 | 4905518 | ID=Msa0530820-mRNA-1:cds;Parent=Msa0530820-mRNA-1 |
| chr4_1 | CDS | 4905173 | 4905288 | 4905173 | ID=Msa0530820-mRNA-1:cds;Parent=Msa0530820-mRNA-1 |
| chr4_1 | CDS | 4904199 | 4904353 | 4904199 | ID=Msa0530820-mRNA-1:cds;Parent=Msa0530820-mRNA-1 |
| chr4_1 | CDS | 4904018 | 4904106 | 4904018 | ID=Msa0530820-mRNA-1:cds;Parent=Msa0530820-mRNA-1 |
| chr4_1 | CDS | 4903401 | 4903932 | 4903401 | ID=Msa0530820-mRNA-1:cds;Parent=Msa0530820-mRNA-1 |
| chr4_1 | CDS | 4902813 | 4902899 | 4902813 | ID=Msa0530820-mRNA-1:cds;Parent=Msa0530820-mRNA-1 |
| chr4_1 | CDS | 4901977 | 4902239 | 4901977 | ID=Msa0530820-mRNA-1:cds;Parent=Msa0530820-mRNA-1 |
| chr4_1 | CDS | 4901797 | 4901879 | 4901797 | ID=Msa0530820-mRNA-1:cds;Parent=Msa0530820-mRNA-1 |
| chr4_1 | CDS | 4901192 | 4901303 | 4901192 | ID=Msa0530820-mRNA-1:cds;Parent=Msa0530820-mRNA-1 |
| chr4_1 | CDS | 4900604 | 4900678 | 4900604 | ID=Msa0530820-mRNA-1:cds;Parent=Msa0530820-mRNA-1 |
| chr4_1 | CDS | 4900333 | 4900518 | 4900333 | ID=Msa0530820-mRNA-1:cds;Parent=Msa0530820-mRNA-1 |
| chr4_1 | three_prime_UTR | 4900006 | 4900332 | 4900006 | ID=Msa0530820-mRNA-1:three_prime_utr;Parent=Msa0530820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
