Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395890 | XP_003598458.2 | 92.163 | 638 | 35 | 3 | 1 | 637 | 1 | 624 | 0.0 | 1160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395890 | sp|Q0WVD6|ANM3_ARATH | 51.869 | 642 | 225 | 13 | 23 | 636 | 16 | 601 | 0.0 | 596 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395890 | G7IYP7 | 92.163 | 638 | 35 | 3 | 1 | 637 | 1 | 624 | 0.0 | 1160 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0395890 | 0.822600 | 2.171808e-53 | -8.615850e-47 |
| Msa0002790 | Msa0395890 | 0.800012 | 1.759687e-48 | -8.615850e-47 |
| Msa0003780 | Msa0395890 | 0.835551 | 1.570928e-56 | -8.615850e-47 |
| Msa0025730 | Msa0395890 | 0.818074 | 2.369701e-52 | -8.615850e-47 |
| Msa0032580 | Msa0395890 | 0.801041 | 1.085564e-48 | -8.615850e-47 |
| Msa0033110 | Msa0395890 | 0.806832 | 6.792662e-50 | -8.615850e-47 |
| Msa0033260 | Msa0395890 | 0.808279 | 3.348696e-50 | -8.615850e-47 |
| Msa0037250 | Msa0395890 | 0.801521 | 8.659482e-49 | -8.615850e-47 |
| Msa0043660 | Msa0395890 | 0.843766 | 1.145071e-58 | -8.615850e-47 |
| Msa0047160 | Msa0395890 | 0.819165 | 1.340110e-52 | -8.615850e-47 |
| Msa0055180 | Msa0395890 | 0.825107 | 5.614793e-54 | -8.615850e-47 |
| Msa0056470 | Msa0395890 | 0.818379 | 2.021911e-52 | -8.615850e-47 |
| Msa0086750 | Msa0395890 | 0.830921 | 2.235880e-55 | -8.615850e-47 |
| Msa0091410 | Msa0395890 | 0.814289 | 1.661945e-51 | -8.615850e-47 |
| Msa0094470 | Msa0395890 | 0.827550 | 1.470349e-54 | -8.615850e-47 |
| Msa0100740 | Msa0395890 | 0.813344 | 2.683619e-51 | -8.615850e-47 |
| Msa0137550 | Msa0395890 | 0.851740 | 7.287712e-61 | -8.615850e-47 |
| Msa0146340 | Msa0395890 | 0.843206 | 1.615616e-58 | -8.615850e-47 |
| Msa0150300 | Msa0395890 | 0.839983 | 1.142915e-57 | -8.615850e-47 |
| Msa0159170 | Msa0395890 | 0.840636 | 7.715092e-58 | -8.615850e-47 |
| Msa0189300 | Msa0395890 | 0.818019 | 2.438595e-52 | -8.615850e-47 |
| Msa0231660 | Msa0395890 | 0.801680 | 8.033784e-49 | -8.615850e-47 |
| Msa0233630 | Msa0395890 | -0.803694 | 3.084108e-49 | -8.615850e-47 |
| Msa0366890 | Msa0395890 | 0.826272 | 2.972044e-54 | -8.615850e-47 |
| Msa0375310 | Msa0395890 | 0.815110 | 1.093150e-51 | -8.615850e-47 |
| Msa0385580 | Msa0395890 | 0.829877 | 4.024213e-55 | -8.615850e-47 |
| Msa0388700 | Msa0395890 | 0.825185 | 5.381530e-54 | -8.615850e-47 |
| Msa0395890 | Msa0397540 | 0.807046 | 6.120021e-50 | -8.615850e-47 |
| Msa0395890 | Msa0414800 | 0.807640 | 4.578618e-50 | -8.615850e-47 |
| Msa0395890 | Msa0421500 | 0.822385 | 2.436753e-53 | -8.615850e-47 |
| Msa0395890 | Msa0428020 | 0.803185 | 3.933573e-49 | -8.615850e-47 |
| Msa0395890 | Msa0428060 | 0.805970 | 1.031963e-49 | -8.615850e-47 |
| Msa0395890 | Msa0447220 | 0.807215 | 5.635136e-50 | -8.615850e-47 |
| Msa0395890 | Msa0458060 | 0.803808 | 2.921435e-49 | -8.615850e-47 |
| Msa0395890 | Msa0482130 | 0.833475 | 5.221562e-56 | -8.615850e-47 |
| Msa0395890 | Msa0490910 | 0.923485 | 2.495092e-89 | -8.615850e-47 |
| Msa0395890 | Msa0497210 | 0.805353 | 1.390455e-49 | -8.615850e-47 |
| Msa0395890 | Msa0521050 | 0.800939 | 1.138964e-48 | -8.615850e-47 |
| Msa0395890 | Msa0530820 | 0.846193 | 2.533403e-59 | -8.615850e-47 |
| Msa0395890 | Msa0539410 | 0.802599 | 5.196801e-49 | -8.615850e-47 |
| Msa0395890 | Msa0548240 | 0.821741 | 3.435856e-53 | -8.615850e-47 |
| Msa0395890 | Msa0581280 | 0.809478 | 1.855575e-50 | -8.615850e-47 |
| Msa0395890 | Msa0620890 | 0.822180 | 2.719679e-53 | -8.615850e-47 |
| Msa0395890 | Msa0623790 | 0.808632 | 2.815361e-50 | -8.615850e-47 |
| Msa0395890 | Msa0634890 | 0.817453 | 3.272337e-52 | -8.615850e-47 |
| Msa0395890 | Msa0643560 | 0.801832 | 7.475856e-49 | -8.615850e-47 |
| Msa0395890 | Msa0647500 | 0.810984 | 8.781417e-51 | -8.615850e-47 |
| Msa0395890 | Msa0661300 | 0.814631 | 1.396153e-51 | -8.615850e-47 |
| Msa0395890 | Msa0689260 | 0.823301 | 1.491412e-53 | -8.615850e-47 |
| Msa0395890 | Msa0698780 | 0.829032 | 6.457147e-55 | -8.615850e-47 |
| Msa0395890 | Msa0753140 | 0.802648 | 5.077323e-49 | -8.615850e-47 |
| Msa0395890 | Msa0788850 | 0.851942 | 6.386496e-61 | -8.615850e-47 |
| Msa0395890 | Msa0794670 | 0.806656 | 7.397795e-50 | -8.615850e-47 |
| Msa0395890 | Msa0798440 | 0.812310 | 4.522169e-51 | -8.615850e-47 |
| Msa0395890 | Msa0802410 | 0.800847 | 1.189572e-48 | -8.615850e-47 |
| Msa0395890 | Msa0830540 | 0.834149 | 3.540765e-56 | -8.615850e-47 |
| Msa0395890 | Msa0887250 | 0.814240 | 1.704092e-51 | -8.615850e-47 |
| Msa0395890 | Msa0945990 | 0.864451 | 1.204635e-64 | -8.615850e-47 |
| Msa0395890 | Msa0953310 | 0.828398 | 9.194610e-55 | -8.615850e-47 |
| Msa0395890 | Msa0989540 | 0.835040 | 2.114609e-56 | -8.615850e-47 |
| Msa0395890 | Msa1006840 | 0.817438 | 3.298086e-52 | -8.615850e-47 |
| Msa0395890 | Msa1019240 | 0.801683 | 8.020001e-49 | -8.615850e-47 |
| Msa0395890 | Msa1019260 | 0.802616 | 5.154559e-49 | -8.615850e-47 |
| Msa0395890 | Msa1043690 | 0.812168 | 4.855478e-51 | -8.615850e-47 |
| Msa0395890 | Msa1081930 | 0.804120 | 2.515759e-49 | -8.615850e-47 |
| Msa0395890 | Msa1104140 | 0.829691 | 4.467776e-55 | -8.615850e-47 |
| Msa0395890 | Msa1104210 | 0.809075 | 2.263628e-50 | -8.615850e-47 |
| Msa0395890 | Msa1160590 | 0.825036 | 5.835069e-54 | -8.615850e-47 |
| Msa0395890 | Msa1165940 | 0.817489 | 3.210928e-52 | -8.615850e-47 |
| Msa0395890 | Msa1181250 | 0.810508 | 1.113465e-50 | -8.615850e-47 |
| Msa0395890 | Msa1181330 | 0.809224 | 2.103168e-50 | -8.615850e-47 |
| Msa0395890 | Msa1206670 | 0.806916 | 6.519288e-50 | -8.615850e-47 |
| Msa0395890 | Msa1209200 | 0.819563 | 1.087512e-52 | -8.615850e-47 |
| Msa0395890 | Msa1209260 | 0.840879 | 6.666404e-58 | -8.615850e-47 |
| Msa0395890 | Msa1213480 | 0.827996 | 1.148628e-54 | -8.615850e-47 |
| Msa0395890 | Msa1215820 | 0.807624 | 4.616268e-50 | -8.615850e-47 |
| Msa0395890 | Msa1265630 | 0.819255 | 1.278203e-52 | -8.615850e-47 |
| Msa0395890 | Msa1300380 | 0.823889 | 1.085968e-53 | -8.615850e-47 |
| Msa0395890 | Msa1327510 | 0.827679 | 1.369633e-54 | -8.615850e-47 |
| Msa0395890 | Msa1332590 | 0.807156 | 5.801659e-50 | -8.615850e-47 |
| Msa0395890 | Msa1358250 | 0.825259 | 5.167629e-54 | -8.615850e-47 |
| Msa0395890 | Msa1366180 | 0.800541 | 1.373334e-48 | -8.615850e-47 |
| Msa0395890 | Msa1374120 | 0.814018 | 1.907192e-51 | -8.615850e-47 |
| Msa0395890 | Msa1384880 | 0.812542 | 4.022941e-51 | -8.615850e-47 |
| Msa0395890 | Msa1392780 | 0.820740 | 5.848136e-53 | -8.615850e-47 |
| Msa0395890 | Msa1394290 | 0.849674 | 2.777872e-60 | -8.615850e-47 |
| Msa0395890 | Msa1399530 | 0.827756 | 1.311928e-54 | -8.615850e-47 |
| Msa0395890 | Msa1419870 | 0.822566 | 2.211976e-53 | -8.615850e-47 |
| Msa0395890 | Msa1432420 | 0.812872 | 3.406228e-51 | -8.615850e-47 |
| Msa0395890 | Msa1432700 | 0.806431 | 8.255489e-50 | -8.615850e-47 |
| Msa0395890 | Msa1457920 | 0.843951 | 1.021291e-58 | -8.615850e-47 |
| Msa0241390 | Msa0395890 | 0.830644 | 2.614747e-55 | -8.615850e-47 |
| Msa0258390 | Msa0395890 | 0.805783 | 1.130076e-49 | -8.615850e-47 |
| Msa0289580 | Msa0395890 | 0.801439 | 9.000529e-49 | -8.615850e-47 |
| Msa0289610 | Msa0395890 | 0.802058 | 6.715681e-49 | -8.615850e-47 |
| Msa0327330 | Msa0395890 | 0.837384 | 5.366858e-57 | -8.615850e-47 |
| Msa0336010 | Msa0395890 | 0.809625 | 1.724808e-50 | -8.615850e-47 |
| Msa0345350 | Msa0395890 | 0.834072 | 3.701669e-56 | -8.615850e-47 |
| Msa0345390 | Msa0395890 | 0.800013 | 1.758857e-48 | -8.615850e-47 |
| Msa0351990 | Msa0395890 | 0.800293 | 1.542510e-48 | -8.615850e-47 |
| Msa0357900 | Msa0395890 | 0.800710 | 1.268702e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395890 | MtrunA17_Chr3g0082021 | 92.163 | 638 | 35 | 3 | 1 | 637 | 1 | 624 | 0.0 | 1160 |
| Msa0395890 | MtrunA17_Chr6g0488051 | 35.604 | 323 | 162 | 9 | 255 | 577 | 65 | 341 | 1.86e-50 | 179 |
| Msa0395890 | MtrunA17_Chr1g0165131 | 35.952 | 331 | 162 | 9 | 254 | 573 | 78 | 369 | 7.45e-49 | 176 |
| Msa0395890 | MtrunA17_Chr2g0306801 | 32.070 | 343 | 179 | 14 | 254 | 578 | 25 | 331 | 9.40e-34 | 132 |
| Msa0395890 | MtrunA17_Chr1g0211591 | 30.508 | 295 | 156 | 10 | 275 | 556 | 1 | 259 | 1.18e-27 | 112 |
| Msa0395890 | MtrunA17_Chr4g0067351 | 29.558 | 362 | 203 | 13 | 227 | 578 | 109 | 428 | 8.29e-27 | 115 |
| Msa0395890 | MtrunA17_Chr2g0295951 | 30.211 | 331 | 180 | 13 | 255 | 578 | 144 | 430 | 5.33e-26 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0395890 | AT3G12270.1 | 51.869 | 642 | 225 | 13 | 23 | 636 | 16 | 601 | 0.0 | 596 |
| Msa0395890 | AT4G29510.1 | 36.464 | 362 | 173 | 12 | 255 | 611 | 72 | 381 | 1.63e-54 | 191 |
| Msa0395890 | AT2G19670.1 | 36.740 | 362 | 172 | 12 | 255 | 611 | 48 | 357 | 2.34e-54 | 190 |
| Msa0395890 | AT3G20020.1 | 36.182 | 351 | 154 | 9 | 254 | 573 | 82 | 393 | 1.00e-50 | 182 |
| Msa0395890 | AT3G20020.3 | 36.182 | 351 | 154 | 9 | 254 | 573 | 82 | 393 | 2.10e-50 | 181 |
| Msa0395890 | AT3G20020.2 | 33.048 | 351 | 143 | 8 | 254 | 573 | 82 | 371 | 8.43e-43 | 159 |
| Msa0395890 | AT1G04870.2 | 30.653 | 398 | 201 | 16 | 255 | 629 | 35 | 380 | 1.11e-35 | 139 |
| Msa0395890 | AT3G06930.2 | 31.098 | 328 | 181 | 12 | 255 | 578 | 148 | 434 | 6.62e-28 | 118 |
| Msa0395890 | AT3G06930.1 | 31.098 | 328 | 181 | 12 | 255 | 578 | 148 | 434 | 6.81e-28 | 118 |
| Msa0395890 | AT5G49020.2 | 30.448 | 335 | 174 | 13 | 255 | 578 | 149 | 435 | 7.04e-27 | 115 |
| Msa0395890 | AT5G49020.1 | 30.448 | 335 | 174 | 13 | 255 | 578 | 151 | 437 | 7.09e-27 | 115 |
| Msa0395890 | AT1G04870.1 | 26.756 | 299 | 158 | 14 | 354 | 629 | 17 | 277 | 7.02e-14 | 73.2 |
Find 140 sgRNAs with CRISPR-Local
Find 429 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGAATCATCTTGCATAAA+AGG | 0.183353 | 3_2:+13286013 | None:intergenic |
| CCACTTCTACGACTCCTTTC+TGG | 0.199373 | 3_2:+13284527 | None:intergenic |
| AAAGTTAATGAAAGTTATTT+TGG | 0.207730 | 3_2:-13285692 | Msa0395890:CDS |
| GTCTGCACCATCTGCTATTT+TGG | 0.210860 | 3_2:+13284168 | None:intergenic |
| TTTCACCGCAACAGCTTCTT+TGG | 0.219398 | 3_2:-13283073 | Msa0395890:CDS |
| CACAGACAATCTTAACTTTC+CGG | 0.225094 | 3_2:-13282894 | Msa0395890:CDS |
| GAACCCATTGCCATTGGATT+TGG | 0.227276 | 3_2:-13282871 | Msa0395890:CDS |
| CCTTCAGTGCCAATTGTTTC+CGG | 0.228262 | 3_2:+13282829 | None:intergenic |
| AACCCATTGCCATTGGATTT+GGG | 0.279768 | 3_2:-13282870 | Msa0395890:CDS |
| GGAAGTGCAGGAACTGAAAT+TGG | 0.286446 | 3_2:+13288797 | None:intergenic |
| TCACAAACATTCTCCCAAAA+TGG | 0.300650 | 3_2:+13283430 | None:intergenic |
| GAGGTACAAGTCTTCCATTT+TGG | 0.302479 | 3_2:-13283444 | Msa0395890:CDS |
| TACCAGTTCCACTATTCTTC+AGG | 0.304524 | 3_2:-13283320 | Msa0395890:intron |
| TTTGGGTCTTACAGTTCATT+TGG | 0.315617 | 3_2:-13285674 | Msa0395890:CDS |
| AAGAATCCCTCTCTGCTAAA+TGG | 0.326618 | 3_2:-13285460 | Msa0395890:CDS |
| CAGCTCAAGCAGGGGCTTCA+AGG | 0.336862 | 3_2:-13284747 | Msa0395890:CDS |
| ATCCAATGGCAATGGGTTCC+CGG | 0.357682 | 3_2:+13282875 | None:intergenic |
| ATCACATTGCAACACATATT+AGG | 0.362480 | 3_2:-13285715 | Msa0395890:CDS |
| GCTAAATGGTGCTGTGGTTA+TGG | 0.363146 | 3_2:-13285446 | Msa0395890:CDS |
| TGACATCAACTATAGGATAT+CGG | 0.365527 | 3_2:+13283362 | None:intergenic |
| GTGATTCTGCAAATCATGTT+TGG | 0.365703 | 3_2:+13286099 | None:intergenic |
| ACAGACAATCTTAACTTTCC+GGG | 0.373070 | 3_2:-13282893 | Msa0395890:CDS |
| TCTATCCTGTTGTGTTAGTT+TGG | 0.374526 | 3_2:-13282538 | Msa0395890:three_prime_UTR |
| AAAACATGTTGCTGGTGTTA+TGG | 0.377230 | 3_2:-13283015 | Msa0395890:CDS |
| ACTTATCGATTATAATTAAG+AGG | 0.379573 | 3_2:+13282481 | None:intergenic |
| GATTTGAAAGACGCAATTTA+CGG | 0.384974 | 3_2:-13285917 | Msa0395890:CDS |
| ATGGACGTCGGCTGTGGAAC+TGG | 0.403171 | 3_2:-13285427 | Msa0395890:CDS |
| GTTGTCCTATGGTTTGATAC+TGG | 0.404254 | 3_2:-13282991 | Msa0395890:CDS |
| AATATGTTCGGCAGTAAAAC+AGG | 0.418992 | 3_2:+13282624 | None:intergenic |
| TCAGATAAGGAACTTGTTAA+CGG | 0.428239 | 3_2:-13285812 | Msa0395890:CDS |
| ATCCACTTCATGGTGCTTCA+TGG | 0.428328 | 3_2:+13283095 | None:intergenic |
| CATGATGTAACTGACTTCAA+TGG | 0.431414 | 3_2:-13286073 | Msa0395890:CDS |
| AACTGGTAACTAAATCTTGA+TGG | 0.438792 | 3_2:+13283335 | None:intergenic |
| TTGGATTTGGGGAAGAAAAC+GGG | 0.442610 | 3_2:-13282858 | Msa0395890:CDS |
| AGATGCCACTGCTGCCATCT+TGG | 0.443421 | 3_2:+13284702 | None:intergenic |
| AAGAACAACAATGGGACGAT+TGG | 0.443965 | 3_2:-13288872 | Msa0395890:CDS |
| TCAATGGGATTAAGCCTTTG+TGG | 0.447033 | 3_2:-13286057 | Msa0395890:CDS |
| TGTTCTTGTTCAACTGTGTA+TGG | 0.447784 | 3_2:+13288918 | None:intergenic |
| GATGGCAGCAGTGGCATCTC+AGG | 0.448831 | 3_2:-13284698 | Msa0395890:intron |
| ATTGGATTTGGGGAAGAAAA+CGG | 0.449649 | 3_2:-13282859 | Msa0395890:CDS |
| CAATGGGATTAAGCCTTTGT+GGG | 0.450013 | 3_2:-13286056 | Msa0395890:CDS |
| TTCCGGGAACCCATTGCCAT+TGG | 0.454934 | 3_2:-13282877 | Msa0395890:CDS |
| CAAGTGCGTCTCCGACCATC+AGG | 0.460891 | 3_2:+13282712 | None:intergenic |
| GGGACAAAACCGGAAACAAT+TGG | 0.463028 | 3_2:-13282838 | Msa0395890:CDS |
| AACCTGAAGAATAGTGGAAC+TGG | 0.464724 | 3_2:+13283318 | None:intergenic |
| CGCAAATCAATCTTCACAGC+AGG | 0.465652 | 3_2:+13282802 | None:intergenic |
| TGGTCTATGACATCAACTAT+AGG | 0.466424 | 3_2:+13283355 | None:intergenic |
| GACATCAACTATAGGATATC+GGG | 0.467340 | 3_2:+13283363 | None:intergenic |
| GGAAGAAAACGGGACAAAAC+CGG | 0.471450 | 3_2:-13282848 | Msa0395890:CDS |
| CAGATAAGGAACTTGTTAAC+GGG | 0.472965 | 3_2:-13285811 | Msa0395890:CDS |
| TTTGTTGCAGGATTTGGAAA+AGG | 0.474514 | 3_2:-13283466 | Msa0395890:intron |
| AGGCTAGAATGGATGCTTAC+GGG | 0.475663 | 3_2:-13285495 | Msa0395890:CDS |
| AAAATTCTAAAACATGTTGC+TGG | 0.477619 | 3_2:-13283023 | Msa0395890:CDS |
| TTTGACCAAACTAACACAAC+AGG | 0.478061 | 3_2:+13282533 | None:intergenic |
| TCGAGAGATGTTAAGTGATA+AGG | 0.479049 | 3_2:-13285645 | Msa0395890:intron |
| TCCCCAAATCCAATGGCAAT+GGG | 0.479745 | 3_2:+13282868 | None:intergenic |
| TTGCGGTGAAATCCACTTCA+TGG | 0.482299 | 3_2:+13283085 | None:intergenic |
| CTGATGGTCGGAGACGCACT+TGG | 0.483332 | 3_2:-13282711 | Msa0395890:CDS |
| ATTGATAAGAATCGAGAAGA+AGG | 0.483613 | 3_2:-13285761 | Msa0395890:CDS |
| TTCCCCAAATCCAATGGCAA+TGG | 0.484968 | 3_2:+13282867 | None:intergenic |
| TTGATGTATTGTTAAGTGAA+TGG | 0.485877 | 3_2:-13284450 | Msa0395890:CDS |
| AACTTTGGTGAATTTGAAGA+AGG | 0.486916 | 3_2:-13285983 | Msa0395890:CDS |
| TTGCTATATGAATCCATGCT+TGG | 0.487442 | 3_2:-13284415 | Msa0395890:CDS |
| TACATGTCTTGCAGCAGCCA+TGG | 0.487769 | 3_2:+13284237 | None:intergenic |
| ACTTACACCAGCAGCTTCCA+TGG | 0.492375 | 3_2:+13282735 | None:intergenic |
| TGTTAGAAATTCTCTCAACT+TGG | 0.496020 | 3_2:-13288730 | Msa0395890:CDS |
| CTTGCCTAGTTCCTCAGATA+AGG | 0.496629 | 3_2:-13285825 | Msa0395890:CDS |
| AGAGTCAATGGCAGCCAGAA+AGG | 0.498571 | 3_2:-13284541 | Msa0395890:CDS |
| GATTCATTGCTGTACAACTT+TGG | 0.498902 | 3_2:-13285998 | Msa0395890:CDS |
| AGAACAACAATGGGACGATT+GGG | 0.501820 | 3_2:-13288871 | Msa0395890:CDS |
| GCTGTGGAACTGGCATCCTC+AGG | 0.503024 | 3_2:-13285417 | Msa0395890:intron |
| GAGAGCAGATGTTGGAGTTG+TGG | 0.503025 | 3_2:-13286136 | Msa0395890:CDS |
| AAAAGCGAAACTAGAGTCAA+TGG | 0.504436 | 3_2:-13284553 | Msa0395890:CDS |
| AGACGAAGAAGAACAACAAT+GGG | 0.505714 | 3_2:-13288880 | Msa0395890:CDS |
| CGTAGAAGTGGTTCATGGTA+TGG | 0.506163 | 3_2:-13284515 | Msa0395890:CDS |
| GGTGTTATGGAGTTGTCCTA+TGG | 0.510283 | 3_2:-13283002 | Msa0395890:CDS |
| TAGGCTAGAATGGATGCTTA+CGG | 0.510366 | 3_2:-13285496 | Msa0395890:CDS |
| GATTTACAACTAGATTCTGC+CGG | 0.516034 | 3_2:-13282969 | Msa0395890:CDS |
| GGGGATGTTGACAGCACAGC+TGG | 0.518510 | 3_2:+13282940 | None:intergenic |
| GTGGTTATGGACGTCGGCTG+TGG | 0.518806 | 3_2:-13285433 | Msa0395890:CDS |
| AGCTCAAGCAGGGGCTTCAA+GGG | 0.522466 | 3_2:-13284746 | Msa0395890:CDS |
| GGCACAAACCTGAAGAATAG+TGG | 0.525375 | 3_2:+13283312 | None:intergenic |
| GGAGTCGTAGAAGTGGTTCA+TGG | 0.526179 | 3_2:-13284520 | Msa0395890:CDS |
| ACATGTCTTGCAGCAGCCAT+GGG | 0.529711 | 3_2:+13284238 | None:intergenic |
| CATGGTTGCGAGTGTGAAGA+AGG | 0.531998 | 3_2:+13288980 | None:intergenic |
| CCGGAAACAATTGGCACTGA+AGG | 0.532793 | 3_2:-13282829 | Msa0395890:CDS |
| GATGAAGAGAAGCACAATGT+TGG | 0.533797 | 3_2:+13288769 | None:intergenic |
| ATGATGTAACTGACTTCAAT+GGG | 0.536664 | 3_2:-13286072 | Msa0395890:CDS |
| CATTAACTATATTCGTTCCA+AGG | 0.537597 | 3_2:-13288685 | Msa0395890:intron |
| TGTATTGTTAAGTGAATGGA+TGG | 0.541095 | 3_2:-13284446 | Msa0395890:CDS |
| ATCCTACCAGACCTTTGACT+TGG | 0.543164 | 3_2:-13283121 | Msa0395890:intron |
| GACATTTCCATGGAAGCTGC+TGG | 0.547329 | 3_2:-13282742 | Msa0395890:CDS |
| TCGCAGCATTGACATTTCCA+TGG | 0.548287 | 3_2:-13282752 | Msa0395890:CDS |
| ACAGCACAGCTGGTGTATCC+CGG | 0.549263 | 3_2:+13282950 | None:intergenic |
| ACCCATTGCCATTGGATTTG+GGG | 0.554541 | 3_2:-13282869 | Msa0395890:CDS |
| CAGTGCTTTATGCACGTGAC+CGG | 0.559254 | 3_2:-13284390 | Msa0395890:intron |
| TGACATGTCTTGCATTGGGG+AGG | 0.560880 | 3_2:-13283404 | Msa0395890:CDS |
| CTCTCTGCTAAATGGTGCTG+TGG | 0.560984 | 3_2:-13285452 | Msa0395890:CDS |
| AGTTGAGGCTAGTGCCAAGA+TGG | 0.562069 | 3_2:-13284716 | Msa0395890:CDS |
| ATGTTGGAACAAGGAAGTGC+AGG | 0.564814 | 3_2:+13288785 | None:intergenic |
| TAAATCCAGTATCAAACCAT+AGG | 0.566573 | 3_2:+13282986 | None:intergenic |
| TTCAAGGGTCATTGCAGTTG+AGG | 0.568402 | 3_2:-13284731 | Msa0395890:CDS |
| ATTTACAACTAGATTCTGCC+GGG | 0.570970 | 3_2:-13282968 | Msa0395890:CDS |
| AGTTCCTTATCTGAGGAACT+AGG | 0.571202 | 3_2:+13285821 | None:intergenic |
| GCTGCTGGTGTAAGTCCTGA+TGG | 0.574483 | 3_2:-13282727 | Msa0395890:CDS |
| TTATAATTAAGAGGCAAAAG+AGG | 0.574685 | 3_2:+13282490 | None:intergenic |
| AAGACGAAGAAGAACAACAA+TGG | 0.579838 | 3_2:-13288881 | Msa0395890:CDS |
| CCAGAAAGGAGTCGTAGAAG+TGG | 0.583154 | 3_2:-13284527 | Msa0395890:CDS |
| GTTAACAAGTTCCTTATCTG+AGG | 0.586317 | 3_2:+13285814 | None:intergenic |
| CCTCACAAGATCTTCATCCA+TGG | 0.589189 | 3_2:+13285940 | None:intergenic |
| AGATGAAGAAACTTCAACCA+TGG | 0.589472 | 3_2:-13285957 | Msa0395890:CDS |
| TAGTGCCAAGATGGCAGCAG+TGG | 0.596391 | 3_2:-13284707 | Msa0395890:CDS |
| ACAGCACCATTTAGCAGAGA+GGG | 0.596424 | 3_2:+13285454 | None:intergenic |
| GTTGCAGGATTTGGAAAAGG+AGG | 0.599248 | 3_2:-13283463 | Msa0395890:intron |
| TGCTGCGATGCTCAGTAGAA+CGG | 0.600832 | 3_2:+13282767 | None:intergenic |
| CTGGTGTAAGTCCTGATGGT+CGG | 0.603021 | 3_2:-13282723 | Msa0395890:CDS |
| AGGTGGCAGAGAGCAGATGT+TGG | 0.604238 | 3_2:-13286144 | Msa0395890:CDS |
| TTGATAAGAATCGAGAAGAA+GGG | 0.611350 | 3_2:-13285760 | Msa0395890:CDS |
| CCATGGATGAAGATCTTGTG+AGG | 0.612648 | 3_2:-13285940 | Msa0395890:CDS |
| TGGTTCCAAAGAAGCTGTTG+CGG | 0.612908 | 3_2:+13283068 | None:intergenic |
| TACCATGAAGCACCATGAAG+TGG | 0.618767 | 3_2:-13283097 | Msa0395890:CDS |
| GACAGAATATCAAGTACATG+TGG | 0.624027 | 3_2:+13282572 | None:intergenic |
| TAAGGAACTTGTTAACGGGA+AGG | 0.625119 | 3_2:-13285807 | Msa0395890:CDS |
| CTTCATGGTAGCCAAGTCAA+AGG | 0.631303 | 3_2:+13283110 | None:intergenic |
| ATAGTAGCCAAAATAGCAGA+TGG | 0.633967 | 3_2:-13284175 | Msa0395890:intron |
| CTTACACTCCGAAAACACAT+TGG | 0.636031 | 3_2:-13282918 | Msa0395890:CDS |
| CATGGATGAAGATCTTGTGA+GGG | 0.645841 | 3_2:-13285939 | Msa0395890:CDS |
| TGTGTTGCAATGTGATTCTG+AGG | 0.646033 | 3_2:+13285722 | None:intergenic |
| AGAAGCACAATGTTGGAACA+AGG | 0.650060 | 3_2:+13288776 | None:intergenic |
| TATCACTTAACATCTCTCGA+TGG | 0.658911 | 3_2:+13285648 | None:intergenic |
| ATAAAGCACTGAGCCAAGCA+TGG | 0.659169 | 3_2:+13284402 | None:intergenic |
| TATTTATCGTCGTCCCACAA+AGG | 0.660086 | 3_2:+13286043 | None:intergenic |
| CACAGCACCATTTAGCAGAG+AGG | 0.673529 | 3_2:+13285453 | None:intergenic |
| TAGGGTAGCAGAGCAGCCCA+TGG | 0.678014 | 3_2:-13284254 | Msa0395890:CDS |
| GCAAATCAATCTTCACAGCA+GGG | 0.679118 | 3_2:+13282803 | None:intergenic |
| AACAATACATCAACACTGTG+AGG | 0.681464 | 3_2:+13284460 | None:intergenic |
| GGTGCTGTGGTTATGGACGT+CGG | 0.684795 | 3_2:-13285439 | Msa0395890:CDS |
| GTTAACGGGAAGGACTCAAG+AGG | 0.689762 | 3_2:-13285797 | Msa0395890:CDS |
| GACGATTGGGAAGAAAACGA+AGG | 0.726813 | 3_2:-13288858 | Msa0395890:CDS |
| GTATTGTTAAGTGAATGGAT+GGG | 0.772028 | 3_2:-13284445 | Msa0395890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAGAGATAAAAAAA+TGG | - | chr3_2:13284216-13284235 | Msa0395890:CDS | 10.0% |
| !! | AAGTACTATATTATAAATTT+CGG | - | chr3_2:13285236-13285255 | Msa0395890:intron | 10.0% |
| !!! | TGGTTTTTATTTTTATTTAT+CGG | - | chr3_2:13288868-13288887 | Msa0395890:CDS | 10.0% |
| !! | AAATACAAAAACTATCAAAA+GGG | + | chr3_2:13282822-13282841 | None:intergenic | 15.0% |
| !! | AAAATACAAAAACTATCAAA+AGG | + | chr3_2:13282823-13282842 | None:intergenic | 15.0% |
| !!! | TTCTAGAATTGAAAATTTAT+TGG | - | chr3_2:13283824-13283843 | Msa0395890:intron | 15.0% |
| !!! | TATTTTCAAACTTAGAAAAA+TGG | + | chr3_2:13283956-13283975 | None:intergenic | 15.0% |
| !!! | TTTTATCTCTTTTATTTTCT+CGG | + | chr3_2:13284213-13284232 | None:intergenic | 15.0% |
| !!! | CAAATTAAGAATATTTTTGT+TGG | - | chr3_2:13284628-13284647 | Msa0395890:intron | 15.0% |
| !!! | TTTTGTGCTTTATAAATTTA+AGG | - | chr3_2:13284655-13284674 | Msa0395890:intron | 15.0% |
| !! | AAGCAGAAAAATATAAAAAA+TGG | - | chr3_2:13285062-13285081 | Msa0395890:intron | 15.0% |
| !!! | AAAGTTAATGAAAGTTATTT+TGG | - | chr3_2:13285778-13285797 | Msa0395890:CDS | 15.0% |
| !!! | AAGTTAATGAAAGTTATTTT+GGG | - | chr3_2:13285779-13285798 | Msa0395890:CDS | 15.0% |
| !!! | TTTTCTTCAAATTTTAATTC+AGG | - | chr3_2:13286865-13286884 | Msa0395890:intron | 15.0% |
| !!! | AAAAATTAAATAGTTCTAGA+TGG | + | chr3_2:13287172-13287191 | None:intergenic | 15.0% |
| !! | TTTATTGATGTTGTATAAAA+GGG | + | chr3_2:13287727-13287746 | None:intergenic | 15.0% |
| !! | AAAATAAAAACCAATATGTT+CGG | + | chr3_2:13288861-13288880 | None:intergenic | 15.0% |
| !!! | TTTTATAATCCGTAACAAAT+GGG | + | chr3_2:13282884-13282903 | None:intergenic | 20.0% |
| !!! | TTTTTATAATCCGTAACAAA+TGG | + | chr3_2:13282885-13282904 | None:intergenic | 20.0% |
| !! | TATTATTCATAAGCTTATCA+AGG | + | chr3_2:13283124-13283143 | None:intergenic | 20.0% |
| !!! | TATCCAAAATCAATTTTACA+TGG | + | chr3_2:13284181-13284200 | None:intergenic | 20.0% |
| !!! | AATAAGTGTATTTTGATGTT+GGG | - | chr3_2:13284239-13284258 | Msa0395890:CDS | 20.0% |
| !!! | TTTGTGCTTTTATCAATTTA+AGG | - | chr3_2:13284373-13284392 | Msa0395890:intron | 20.0% |
| !! | AAATACTTATTGTGTATGTT+TGG | - | chr3_2:13284480-13284499 | Msa0395890:CDS | 20.0% |
| !!! | CTAAAATTGATTTTGACATT+TGG | + | chr3_2:13284957-13284976 | None:intergenic | 20.0% |
| !!! | CAAATGTCAAAATCAATTTT+AGG | - | chr3_2:13284955-13284974 | Msa0395890:intron | 20.0% |
| !!! | ATTAACTACCAATTTTTTCA+CGG | + | chr3_2:13285593-13285612 | None:intergenic | 20.0% |
| !!! | AAAATGTACTTCTCATTTTT+TGG | - | chr3_2:13285851-13285870 | Msa0395890:CDS | 20.0% |
| !!! | AGTTACAACTATTTTTATGT+AGG | - | chr3_2:13285955-13285974 | Msa0395890:CDS | 20.0% |
| !! | ATATAGTAACCTATCAATTT+GGG | + | chr3_2:13286536-13286555 | None:intergenic | 20.0% |
| !! | TATATAGTAACCTATCAATT+TGG | + | chr3_2:13286537-13286556 | None:intergenic | 20.0% |
| !!! | TTCTTATGTTAGTTGATTTT+AGG | - | chr3_2:13286560-13286579 | Msa0395890:intron | 20.0% |
| !!! | TGAAGTACATATTAATCTTT+TGG | - | chr3_2:13286613-13286632 | Msa0395890:intron | 20.0% |
| !!! | GAAGTACATATTAATCTTTT+GGG | - | chr3_2:13286614-13286633 | Msa0395890:intron | 20.0% |
| !!! | AAGTACATATTAATCTTTTG+GGG | - | chr3_2:13286615-13286634 | Msa0395890:intron | 20.0% |
| !!! | TTTTTCAAGTAAAAAACACT+TGG | - | chr3_2:13287423-13287442 | Msa0395890:intron | 20.0% |
| !! | AAATTACAATTAGAATGAGA+TGG | + | chr3_2:13287465-13287484 | None:intergenic | 20.0% |
| !! | GTTTATTGATGTTGTATAAA+AGG | + | chr3_2:13287728-13287747 | None:intergenic | 20.0% |
| !!! | GATTTTTCTGATATTTTGTT+CGG | - | chr3_2:13287909-13287928 | Msa0395890:intron | 20.0% |
| !!! | ATTTTTCTGATATTTTGTTC+GGG | - | chr3_2:13287910-13287929 | Msa0395890:intron | 20.0% |
| !! | ATATAAGAAAATAAGATCAC+AGG | + | chr3_2:13287941-13287960 | None:intergenic | 20.0% |
| !! | ACATATTTACATTACACAAA+GGG | + | chr3_2:13288182-13288201 | None:intergenic | 20.0% |
| !! | AACATATTTACATTACACAA+AGG | + | chr3_2:13288183-13288202 | None:intergenic | 20.0% |
| !! | CATACAGTTAATTATCAAAA+AGG | + | chr3_2:13288235-13288254 | None:intergenic | 20.0% |
| !!! | TGATTTTGATGCTTATTTGT+TGG | - | chr3_2:13282908-13282927 | Msa0395890:CDS | 25.0% |
| !!! | TGACTAGTTTTAATCACTTA+TGG | + | chr3_2:13283213-13283232 | None:intergenic | 25.0% |
| !!! | CACATTTTTTAGTTGGTTTT+AGG | - | chr3_2:13283233-13283252 | Msa0395890:intron | 25.0% |
| ! | ATAAGTTGTTTATCGAAACA+GGG | + | chr3_2:13283259-13283278 | None:intergenic | 25.0% |
| ! | AATAAGTTGTTTATCGAAAC+AGG | + | chr3_2:13283260-13283279 | None:intergenic | 25.0% |
| !! | CTTGATTTTATCTTTCTCTA+TGG | + | chr3_2:13283341-13283360 | None:intergenic | 25.0% |
| ! | AAAAACCCTTTAATGTTTAG+CGG | - | chr3_2:13283528-13283547 | Msa0395890:intron | 25.0% |
| ! | AAAGAAAACAACAGAATTTG+TGG | - | chr3_2:13283591-13283610 | Msa0395890:intron | 25.0% |
| ! | ACAAATACTTAGTGTATGTT+TGG | - | chr3_2:13283663-13283682 | Msa0395890:intron | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | - | chr3_2:13283730-13283749 | Msa0395890:intron | 25.0% |
| ! | CAAGTTAAAATCAATTCTGT+AGG | + | chr3_2:13283781-13283800 | None:intergenic | 25.0% |
| !!! | TTTAACTTGAAGCTAGAAAT+TGG | - | chr3_2:13283792-13283811 | Msa0395890:intron | 25.0% |
| !!! | TTAATTTGTGTATGTTGGAT+TGG | - | chr3_2:13283903-13283922 | Msa0395890:intron | 25.0% |
| !!! | AATGTTTGAATGAGTTGATA+TGG | - | chr3_2:13284098-13284117 | Msa0395890:intron | 25.0% |
| ! | AACAAAACACACAATTTGTA+TGG | + | chr3_2:13284125-13284144 | None:intergenic | 25.0% |
| !!! | GAATAAGTGTATTTTGATGT+TGG | - | chr3_2:13284238-13284257 | Msa0395890:CDS | 25.0% |
| !!! | TATTTTGATGTTGGGATTTT+GGG | - | chr3_2:13284247-13284266 | Msa0395890:CDS | 25.0% |
| ! | GTCAATAGAAATGAAATTGA+AGG | - | chr3_2:13284285-13284304 | Msa0395890:intron | 25.0% |
| ! | TAAGGATTGAATGATTCAAT+AGG | - | chr3_2:13284673-13284692 | Msa0395890:intron | 25.0% |
| !! | ATGTTTGGTTTCAATTTCAT+GGG | + | chr3_2:13285002-13285021 | None:intergenic | 25.0% |
| !! | TATGTTTGGTTTCAATTTCA+TGG | + | chr3_2:13285003-13285022 | None:intergenic | 25.0% |
| ! | TATTATAAATTTCGGTTGAC+TGG | - | chr3_2:13285244-13285263 | Msa0395890:intron | 25.0% |
| ! | AATGAATCATCTTGCATAAA+AGG | + | chr3_2:13285460-13285479 | None:intergenic | 25.0% |
| !!! | TATTTTTATGTAGGCTAGAA+TGG | - | chr3_2:13285964-13285983 | Msa0395890:CDS | 25.0% |
| ! | TAAAAGCCAGAATAATACAT+GGG | + | chr3_2:13286445-13286464 | None:intergenic | 25.0% |
| ! | ATAAAAGCCAGAATAATACA+TGG | + | chr3_2:13286446-13286465 | None:intergenic | 25.0% |
| !!! | ATTATTCTGGCTTTTATTAG+TGG | - | chr3_2:13286449-13286468 | Msa0395890:intron | 25.0% |
| ! | AAAGATTGAGCAATCAAATA+TGG | + | chr3_2:13286656-13286675 | None:intergenic | 25.0% |
| ! | TTGATGTATTGTTAAGTGAA+TGG | - | chr3_2:13287020-13287039 | Msa0395890:intron | 25.0% |
| !!! | ACATTAAAATTTTAAGGCTG+TGG | - | chr3_2:13287375-13287394 | Msa0395890:intron | 25.0% |
| ! | TATACAACAACAATAAACGA+GGG | - | chr3_2:13287531-13287550 | Msa0395890:intron | 25.0% |
| !! | TTTTTCTGATATTTTGTTCG+GGG | - | chr3_2:13287911-13287930 | Msa0395890:intron | 25.0% |
| ! | ACAAACTATAGAAGAAAAAC+TGG | + | chr3_2:13287989-13288008 | None:intergenic | 25.0% |
| !!! | AAAATTCTAAAACATGTTGC+TGG | - | chr3_2:13288447-13288466 | Msa0395890:intron | 25.0% |
| ! | TTATAATTAAGAGGCAAAAG+AGG | + | chr3_2:13288983-13289002 | None:intergenic | 25.0% |
| TGTTAGAAATTCTCTCAACT+TGG | - | chr3_2:13282740-13282759 | Msa0395890:CDS | 30.0% | |
| CATTAACTATATTCGTTCCA+AGG | - | chr3_2:13282785-13282804 | Msa0395890:CDS | 30.0% | |
| !!! | GCTTATTTGTTGGTTTTAGT+TGG | - | chr3_2:13282918-13282937 | Msa0395890:CDS | 30.0% |
| ATAAGCTGTTTATCCAAACA+GGG | + | chr3_2:13282951-13282970 | None:intergenic | 30.0% | |
| TATAAGCTGTTTATCCAAAC+AGG | + | chr3_2:13282952-13282971 | None:intergenic | 30.0% | |
| TATAGCACAAACACTTAAGA+CGG | - | chr3_2:13282968-13282987 | Msa0395890:CDS | 30.0% | |
| !!! | CTAGTCACACATTTTTTAGT+TGG | - | chr3_2:13283226-13283245 | Msa0395890:intron | 30.0% |
| !! | ATGCTATAAGCTGTTTTCAT+AGG | - | chr3_2:13283378-13283397 | Msa0395890:CDS | 30.0% |
| ATCTATTTGAGCTTATCTAC+TGG | + | chr3_2:13283502-13283521 | None:intergenic | 30.0% | |
| ! | GCTAAACATTAAAGGGTTTT+TGG | + | chr3_2:13283529-13283548 | None:intergenic | 30.0% |
| AGTGAGAGAAAATGAAAGAA+AGG | - | chr3_2:13283568-13283587 | Msa0395890:intron | 30.0% | |
| GAGTTTGATGTTGAGATTAT+GGG | - | chr3_2:13283613-13283632 | Msa0395890:intron | 30.0% | |
| !!! | AATTTTGGTTACTCCAAAAG+TGG | + | chr3_2:13283691-13283710 | None:intergenic | 30.0% |
| ! | GTAACCAAAATTGATTCTAG+AGG | - | chr3_2:13283699-13283718 | Msa0395890:intron | 30.0% |
| !!! | TACACCTCTAGAATCAATTT+TGG | + | chr3_2:13283706-13283725 | None:intergenic | 30.0% |
| ! | ATGAGCTAAAATTGATTCCA+CGG | + | chr3_2:13283884-13283903 | None:intergenic | 30.0% |
| !! | GCTCATTAATTTGTGTATGT+TGG | - | chr3_2:13283898-13283917 | Msa0395890:intron | 30.0% |
| AGCATATAGCATGCAAATTT+AGG | - | chr3_2:13284041-13284060 | Msa0395890:intron | 30.0% | |
| GCATATAGCATGCAAATTTA+GGG | - | chr3_2:13284042-13284061 | Msa0395890:intron | 30.0% | |
| !! | CAAATTGTGTGTTTTGTTCT+TGG | - | chr3_2:13284127-13284146 | Msa0395890:intron | 30.0% |
| !! | GAGCCATGTAAAATTGATTT+TGG | - | chr3_2:13284175-13284194 | Msa0395890:intron | 30.0% |
| !!! | GTATTTTGATGTTGGGATTT+TGG | - | chr3_2:13284246-13284265 | Msa0395890:CDS | 30.0% |
| !! | ATTTTGATGTTGGGATTTTG+GGG | - | chr3_2:13284248-13284267 | Msa0395890:CDS | 30.0% |
| !! | TTCTATTGACTCAATTTCCT+AGG | + | chr3_2:13284275-13284294 | None:intergenic | 30.0% |
| AGTACTTAGCATGCAAATTT+AGG | - | chr3_2:13284334-13284353 | Msa0395890:intron | 30.0% | |
| GTACTTAGCATGCAAATTTA+GGG | - | chr3_2:13284335-13284354 | Msa0395890:intron | 30.0% | |
| GCAAATTTAGGGATTTATGT+TGG | - | chr3_2:13284346-13284365 | Msa0395890:intron | 30.0% | |
| CTTATTGTGTATGTTTGGAT+TGG | - | chr3_2:13284485-13284504 | Msa0395890:CDS | 30.0% | |
| !! | AAGTGATTTTGGTGAAATCA+TGG | - | chr3_2:13284508-13284527 | Msa0395890:CDS | 30.0% |
| TAGCTTCTTAGTTAGAACTT+AGG | - | chr3_2:13284890-13284909 | Msa0395890:intron | 30.0% | |
| !! | CATTGCTTTTGACTCTAAAA+TGG | + | chr3_2:13284918-13284937 | None:intergenic | 30.0% |
| AAAGGTCAGAACAAGTAAAT+TGG | + | chr3_2:13285158-13285177 | None:intergenic | 30.0% | |
| TTGCTAGCTGAAAATGAAAA+AGG | + | chr3_2:13285176-13285195 | None:intergenic | 30.0% | |
| ! | ATGATGTAACTGACTTCAAT+GGG | - | chr3_2:13285398-13285417 | Msa0395890:intron | 30.0% |
| AACTTTGGTGAATTTGAAGA+AGG | - | chr3_2:13285487-13285506 | Msa0395890:CDS | 30.0% | |
| GATTTGAAAGACGCAATTTA+CGG | - | chr3_2:13285553-13285572 | Msa0395890:intron | 30.0% | |
| !! | TCAGATAAGGAACTTGTTAA+CGG | - | chr3_2:13285658-13285677 | Msa0395890:CDS | 30.0% |
| ATTGATAAGAATCGAGAAGA+AGG | - | chr3_2:13285709-13285728 | Msa0395890:CDS | 30.0% | |
| TTGATAAGAATCGAGAAGAA+GGG | - | chr3_2:13285710-13285729 | Msa0395890:CDS | 30.0% | |
| ATCACATTGCAACACATATT+AGG | - | chr3_2:13285755-13285774 | Msa0395890:CDS | 30.0% | |
| !!! | ACTTCTCATTTTTTGGTTTC+AGG | - | chr3_2:13285858-13285877 | Msa0395890:CDS | 30.0% |
| !! | TTGGTTTCAGGTTTGAATAA+AGG | - | chr3_2:13285870-13285889 | Msa0395890:CDS | 30.0% |
| TCTTCCAAACAAATTAACCA+AGG | - | chr3_2:13286156-13286175 | Msa0395890:intron | 30.0% | |
| !! | AACACCTTGGTTAATTTGTT+TGG | + | chr3_2:13286163-13286182 | None:intergenic | 30.0% |
| TATATTTCTCAGAAACACCT+TGG | + | chr3_2:13286176-13286195 | None:intergenic | 30.0% | |
| TTATTGAAAATACCGAGAAC+AGG | - | chr3_2:13286224-13286243 | Msa0395890:intron | 30.0% | |
| !!! | GTAATTTTTTCTCCTGTTCT+CGG | + | chr3_2:13286239-13286258 | None:intergenic | 30.0% |
| GAGAAAAAATTACAGTCCAA+GGG | - | chr3_2:13286246-13286265 | Msa0395890:intron | 30.0% | |
| ATTACTGTGGTCTAAATAAC+TGG | + | chr3_2:13286343-13286362 | None:intergenic | 30.0% | |
| ATTACAGTTAGAGTCTACAA+GGG | + | chr3_2:13286382-13286401 | None:intergenic | 30.0% | |
| AATTACAGTTAGAGTCTACA+AGG | + | chr3_2:13286383-13286402 | None:intergenic | 30.0% | |
| ! | CTATCAATTTGGGTTTGTAT+AGG | + | chr3_2:13286526-13286545 | None:intergenic | 30.0% |
| CTATACAAACCCAAATTGAT+AGG | - | chr3_2:13286524-13286543 | Msa0395890:intron | 30.0% | |
| GAAGAAAAACAAAGTTAGCA+AGG | + | chr3_2:13286853-13286872 | None:intergenic | 30.0% | |
| !! | ATTCAGGTTGCCAAAAATAA+CGG | - | chr3_2:13286881-13286900 | Msa0395890:intron | 30.0% |
| TGTATTGTTAAGTGAATGGA+TGG | - | chr3_2:13287024-13287043 | Msa0395890:intron | 30.0% | |
| GTATTGTTAAGTGAATGGAT+GGG | - | chr3_2:13287025-13287044 | Msa0395890:intron | 30.0% | |
| !! | AATAGTTCTAGATGGAATGA+AGG | + | chr3_2:13287164-13287183 | None:intergenic | 30.0% |
| AAAACACTTGGAACAACATT+TGG | - | chr3_2:13287435-13287454 | Msa0395890:intron | 30.0% | |
| GTATACAACAACAATAAACG+AGG | - | chr3_2:13287530-13287549 | Msa0395890:intron | 30.0% | |
| ATACAACAACAATAAACGAG+GGG | - | chr3_2:13287532-13287551 | Msa0395890:intron | 30.0% | |
| !!! | TCTTGCTATAACGTTTTTTG+TGG | - | chr3_2:13287849-13287868 | Msa0395890:intron | 30.0% |
| !! | TTTCTTCTATAGTTTGTTGC+AGG | - | chr3_2:13287992-13288011 | Msa0395890:intron | 30.0% |
| !! | ATTTTGACATGTCTTGCATT+GGG | - | chr3_2:13288062-13288081 | Msa0395890:intron | 30.0% |
| TGACATCAACTATAGGATAT+CGG | + | chr3_2:13288111-13288130 | None:intergenic | 30.0% | |
| AACTGGTAACTAAATCTTGA+TGG | + | chr3_2:13288138-13288157 | None:intergenic | 30.0% | |
| ! | GTATGTTTTCAATCATTCCA+AGG | - | chr3_2:13288250-13288269 | Msa0395890:intron | 30.0% |
| !!! | TTTTCTGAAGCACTCAATTT+TGG | + | chr3_2:13288425-13288444 | None:intergenic | 30.0% |
| TAAATCCAGTATCAAACCAT+AGG | + | chr3_2:13288487-13288506 | None:intergenic | 30.0% | |
| !!! | TTTTTCGCTTTGGTTGGTTT+TGG | + | chr3_2:13282520-13282539 | None:intergenic | 35.0% |
| !! | CTTTTTCCTCTTTTTCGCTT+TGG | + | chr3_2:13282530-13282549 | None:intergenic | 35.0% |
| TGTTCTTGTTCAACTGTGTA+TGG | + | chr3_2:13282555-13282574 | None:intergenic | 35.0% | |
| AAGACGAAGAAGAACAACAA+TGG | - | chr3_2:13282589-13282608 | Msa0395890:three_prime_UTR | 35.0% | |
| AGACGAAGAAGAACAACAAT+GGG | - | chr3_2:13282590-13282609 | Msa0395890:three_prime_UTR | 35.0% | |
| AAAGGGTTACTTAGTTACCT+TGG | + | chr3_2:13282805-13282824 | None:intergenic | 35.0% | |
| ! | GAAGAGAAACCCATTTGTTA+CGG | - | chr3_2:13282872-13282891 | Msa0395890:CDS | 35.0% |
| CACTTATGGTCTGTTTGAAT+TGG | + | chr3_2:13283199-13283218 | None:intergenic | 35.0% | |
| ACTTATAAGTGCTTGTGCTA+TGG | + | chr3_2:13283289-13283308 | None:intergenic | 35.0% | |
| !! | GCTGTTTTCATAGGTTATCT+TGG | - | chr3_2:13283387-13283406 | Msa0395890:CDS | 35.0% |
| CTCAACCGCTAAACATTAAA+GGG | + | chr3_2:13283536-13283555 | None:intergenic | 35.0% | |
| TCTCAACCGCTAAACATTAA+AGG | + | chr3_2:13283537-13283556 | None:intergenic | 35.0% | |
| GGAGTTTGATGTTGAGATTA+TGG | - | chr3_2:13283612-13283631 | Msa0395890:intron | 35.0% | |
| TGTTGAGATTATGGGATTGA+AGG | - | chr3_2:13283621-13283640 | Msa0395890:intron | 35.0% | |
| !! | TGTATGTTTGGTTCCACTTT+TGG | - | chr3_2:13283675-13283694 | Msa0395890:intron | 35.0% |
| ! | GAATGTAAATTTTGTCACCG+TGG | - | chr3_2:13283864-13283883 | Msa0395890:intron | 35.0% |
| ! | ATGTTGGATTGGAATGAGTT+TGG | - | chr3_2:13283914-13283933 | Msa0395890:intron | 35.0% |
| ! | GAATGAGTTTGGTGAAATCA+TGG | - | chr3_2:13283925-13283944 | Msa0395890:intron | 35.0% |
| !! | ATTGTGTGTTTTGTTCTTGG+TGG | - | chr3_2:13284130-13284149 | Msa0395890:intron | 35.0% |
| !! | GTTTGGATTGGAAGTGATTT+TGG | - | chr3_2:13284497-13284516 | Msa0395890:CDS | 35.0% |
| !! | TGATTTTGGTGAAATCATGG+TGG | - | chr3_2:13284511-13284530 | Msa0395890:CDS | 35.0% |
| ! | AACCATAGAAAGTGTGTGTT+TGG | - | chr3_2:13284696-13284715 | Msa0395890:intron | 35.0% |
| AACCAAACACACACTTTCTA+TGG | + | chr3_2:13284701-13284720 | None:intergenic | 35.0% | |
| TGGTGAAAATTGGTTACGAA+TGG | - | chr3_2:13284726-13284745 | Msa0395890:CDS | 35.0% | |
| TGAGCATATTTGTGTGAAAG+TGG | - | chr3_2:13284809-13284828 | Msa0395890:intron | 35.0% | |
| GAGCATATTTGTGTGAAAGT+GGG | - | chr3_2:13284810-13284829 | Msa0395890:intron | 35.0% | |
| GGTTGAAGGGTAAAAATTTG+AGG | - | chr3_2:13284831-13284850 | Msa0395890:intron | 35.0% | |
| TTGAGGCTCAAAATCATGTT+TGG | - | chr3_2:13284848-13284867 | Msa0395890:intron | 35.0% | |
| ! | TTTGGTTTCAATTTCATGGG+AGG | + | chr3_2:13284999-13285018 | None:intergenic | 35.0% |
| GAGTGAACTTTGTGTATGTT+TGG | + | chr3_2:13285017-13285036 | None:intergenic | 35.0% | |
| GCTTCTAATTTCTCGTCAAT+TGG | + | chr3_2:13285046-13285065 | None:intergenic | 35.0% | |
| ! | TTCATTTTCAGCTAGCAAAC+TGG | - | chr3_2:13285178-13285197 | Msa0395890:intron | 35.0% |
| TTTGTTCTGCTTTCATAACC+AGG | - | chr3_2:13285306-13285325 | Msa0395890:intron | 35.0% | |
| GTGATTCTGCAAATCATGTT+TGG | + | chr3_2:13285374-13285393 | None:intergenic | 35.0% | |
| ! | CATGATGTAACTGACTTCAA+TGG | - | chr3_2:13285397-13285416 | Msa0395890:intron | 35.0% |
| GATTCATTGCTGTACAACTT+TGG | - | chr3_2:13285472-13285491 | Msa0395890:CDS | 35.0% | |
| AGATGAAGAAACTTCAACCA+TGG | - | chr3_2:13285513-13285532 | Msa0395890:intron | 35.0% | |
| TCAAGATGCCGTGAAAAAAT+TGG | - | chr3_2:13285582-13285601 | Msa0395890:intron | 35.0% | |
| GTTAACAAGTTCCTTATCTG+AGG | + | chr3_2:13285659-13285678 | None:intergenic | 35.0% | |
| !! | CAGATAAGGAACTTGTTAAC+GGG | - | chr3_2:13285659-13285678 | Msa0395890:CDS | 35.0% |
| TTTGGGTCTTACAGTTCATT+TGG | - | chr3_2:13285796-13285815 | Msa0395890:CDS | 35.0% | |
| TATCACTTAACATCTCTCGA+TGG | + | chr3_2:13285825-13285844 | None:intergenic | 35.0% | |
| TCGAGAGATGTTAAGTGATA+AGG | - | chr3_2:13285825-13285844 | Msa0395890:CDS | 35.0% | |
| TCTCTAATCTATAGCCTCAT+TGG | - | chr3_2:13286121-13286140 | Msa0395890:CDS | 35.0% | |
| GGAGAAAAAATTACAGTCCA+AGG | - | chr3_2:13286245-13286264 | Msa0395890:intron | 35.0% | |
| ACTGGAGCAAAATAGACAAA+AGG | + | chr3_2:13286325-13286344 | None:intergenic | 35.0% | |
| AGGTAGCTAAGTTATTACTG+TGG | + | chr3_2:13286356-13286375 | None:intergenic | 35.0% | |
| TTACAGTTAGAGTCTACAAG+GGG | + | chr3_2:13286381-13286400 | None:intergenic | 35.0% | |
| AGAGTTAGACAGTTAGTTGT+CGG | + | chr3_2:13286413-13286432 | None:intergenic | 35.0% | |
| CAGAATAATACATGGGAACA+GGG | + | chr3_2:13286438-13286457 | None:intergenic | 35.0% | |
| TGGGTTTGTATAGGAAAACA+GGG | + | chr3_2:13286517-13286536 | None:intergenic | 35.0% | |
| TTGGGTTTGTATAGGAAAAC+AGG | + | chr3_2:13286518-13286537 | None:intergenic | 35.0% | |
| AAAAGCGAAACTAGAGTCAA+TGG | - | chr3_2:13286917-13286936 | Msa0395890:intron | 35.0% | |
| AACAATACATCAACACTGTG+AGG | + | chr3_2:13287013-13287032 | None:intergenic | 35.0% | |
| TTGCTATATGAATCCATGCT+TGG | - | chr3_2:13287055-13287074 | Msa0395890:intron | 35.0% | |
| TGTTCTCAATAGTGCACTAT+AGG | - | chr3_2:13287197-13287216 | Msa0395890:intron | 35.0% | |
| GTTCTCAATAGTGCACTATA+GGG | - | chr3_2:13287198-13287217 | Msa0395890:intron | 35.0% | |
| !! | TTTTGCTGTAGTAGTTGTTG+TGG | - | chr3_2:13287267-13287286 | Msa0395890:intron | 35.0% |
| ATAGTAGCCAAAATAGCAGA+TGG | - | chr3_2:13287295-13287314 | Msa0395890:intron | 35.0% | |
| !!! | CTTTTAGCTTGGAGTATCTT+AGG | - | chr3_2:13287398-13287417 | Msa0395890:intron | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | chr3_2:13287628-13287647 | None:intergenic | 35.0% |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr3_2:13287627-13287646 | Msa0395890:intron | 35.0% | |
| CTTATCTCACTAAGTAGTGT+CGG | - | chr3_2:13287762-13287781 | Msa0395890:intron | 35.0% | |
| !!! | GCTATAACGTTTTTTGTGGT+TGG | - | chr3_2:13287853-13287872 | Msa0395890:intron | 35.0% |
| ! | ATCTCAGAAAAAGAGCATAG+TGG | + | chr3_2:13287879-13287898 | None:intergenic | 35.0% |
| !! | CTATAGTTTGTTGCAGGATT+TGG | - | chr3_2:13287998-13288017 | Msa0395890:intron | 35.0% |
| TTTGTTGCAGGATTTGGAAA+AGG | - | chr3_2:13288004-13288023 | Msa0395890:intron | 35.0% | |
| ! | AGGTACAAGTCTTCCATTTT+GGG | - | chr3_2:13288027-13288046 | Msa0395890:intron | 35.0% |
| TCACAAACATTCTCCCAAAA+TGG | + | chr3_2:13288043-13288062 | None:intergenic | 35.0% | |
| !! | GATTTTGACATGTCTTGCAT+TGG | - | chr3_2:13288061-13288080 | Msa0395890:intron | 35.0% |
| ! | TTTTGACATGTCTTGCATTG+GGG | - | chr3_2:13288063-13288082 | Msa0395890:intron | 35.0% |
| GACATCAACTATAGGATATC+GGG | + | chr3_2:13288110-13288129 | None:intergenic | 35.0% | |
| TGGTCTATGACATCAACTAT+AGG | + | chr3_2:13288118-13288137 | None:intergenic | 35.0% | |
| !! | TATGAAACTTGCTAGATCCT+TGG | + | chr3_2:13288270-13288289 | None:intergenic | 35.0% |
| ! | AAAACATGTTGCTGGTGTTA+TGG | - | chr3_2:13288455-13288474 | Msa0395890:intron | 35.0% |
| GATTTACAACTAGATTCTGC+CGG | - | chr3_2:13288501-13288520 | Msa0395890:intron | 35.0% | |
| ATTTACAACTAGATTCTGCC+GGG | - | chr3_2:13288502-13288521 | Msa0395890:intron | 35.0% | |
| ! | AATGTGTTTTCGGAGTGTAA+GGG | + | chr3_2:13288553-13288572 | None:intergenic | 35.0% |
| CACAGACAATCTTAACTTTC+CGG | - | chr3_2:13288576-13288595 | Msa0395890:intron | 35.0% | |
| ACAGACAATCTTAACTTTCC+GGG | - | chr3_2:13288577-13288596 | Msa0395890:intron | 35.0% | |
| ATTGGATTTGGGGAAGAAAA+CGG | - | chr3_2:13288611-13288630 | Msa0395890:intron | 35.0% | |
| !!! | TCAACTTTTTTCTCTGCAGT+AGG | - | chr3_2:13288787-13288806 | Msa0395890:CDS | 35.0% |
| AATATGTTCGGCAGTAAAAC+AGG | + | chr3_2:13288849-13288868 | None:intergenic | 35.0% | |
| ! | TGTTTTACTGCCGAACATAT+TGG | - | chr3_2:13288848-13288867 | Msa0395890:CDS | 35.0% |
| GACAGAATATCAAGTACATG+TGG | + | chr3_2:13288901-13288920 | None:intergenic | 35.0% | |
| TCTATCCTGTTGTGTTAGTT+TGG | - | chr3_2:13288932-13288951 | Msa0395890:CDS | 35.0% | |
| TTTGACCAAACTAACACAAC+AGG | + | chr3_2:13288940-13288959 | None:intergenic | 35.0% | |
| AACCAACCAAAGCGAAAAAG+AGG | - | chr3_2:13282521-13282540 | Msa0395890:three_prime_UTR | 40.0% | |
| !! | TTCCTCTTTTTCGCTTTGGT+TGG | + | chr3_2:13282526-13282545 | None:intergenic | 40.0% |
| AAGAACAACAATGGGACGAT+TGG | - | chr3_2:13282598-13282617 | Msa0395890:three_prime_UTR | 40.0% | |
| AGAACAACAATGGGACGATT+GGG | - | chr3_2:13282599-13282618 | Msa0395890:three_prime_UTR | 40.0% | |
| ! | AGAAGCACAATGTTGGAACA+AGG | + | chr3_2:13282697-13282716 | None:intergenic | 40.0% |
| ! | GATGAAGAGAAGCACAATGT+TGG | + | chr3_2:13282704-13282723 | None:intergenic | 40.0% |
| !!! | AGTTGGTTTTAGACCCTGTT+TGG | - | chr3_2:13282935-13282954 | Msa0395890:CDS | 40.0% |
| CCAAACACACACACTCTTTA+TGG | + | chr3_2:13284419-13284438 | None:intergenic | 40.0% | |
| ! | CCATAAAGAGTGTGTGTGTT+TGG | - | chr3_2:13284416-13284435 | Msa0395890:CDS | 40.0% |
| ! | AGTTTTTGCGAAAATCGCAG+TGG | - | chr3_2:13284553-13284572 | Msa0395890:CDS | 40.0% |
| GTCTGGATTGACAATGAGTT+TGG | + | chr3_2:13284594-13284613 | None:intergenic | 40.0% | |
| TTGCATGCTAAATGCATGTC+TGG | + | chr3_2:13284611-13284630 | None:intergenic | 40.0% | |
| !! | GAAAGTGTGTGTTTGGTTCT+AGG | - | chr3_2:13284703-13284722 | Msa0395890:CDS | 40.0% |
| !! | TGGTTCTAGGTGGTGAAAAT+TGG | - | chr3_2:13284716-13284735 | Msa0395890:CDS | 40.0% |
| !! | TTTGTGTGAAAGTGGGTTGA+AGG | - | chr3_2:13284817-13284836 | Msa0395890:intron | 40.0% |
| !! | TTGTGTGAAAGTGGGTTGAA+GGG | - | chr3_2:13284818-13284837 | Msa0395890:intron | 40.0% |
| AGGCTCAAAATCATGTTTGG+AGG | - | chr3_2:13284851-13284870 | Msa0395890:intron | 40.0% | |
| ! | AAGCCTTATCCCACTAAAGT+GGG | + | chr3_2:13285105-13285124 | None:intergenic | 40.0% |
| TCAATGGGATTAAGCCTTTG+TGG | - | chr3_2:13285413-13285432 | Msa0395890:intron | 40.0% | |
| CAATGGGATTAAGCCTTTGT+GGG | - | chr3_2:13285414-13285433 | Msa0395890:intron | 40.0% | |
| TATTTATCGTCGTCCCACAA+AGG | + | chr3_2:13285430-13285449 | None:intergenic | 40.0% | |
| CATGGATGAAGATCTTGTGA+GGG | - | chr3_2:13285531-13285550 | Msa0395890:intron | 40.0% | |
| AGTTCCTTATCTGAGGAACT+AGG | + | chr3_2:13285652-13285671 | None:intergenic | 40.0% | |
| !! | TAAGGAACTTGTTAACGGGA+AGG | - | chr3_2:13285663-13285682 | Msa0395890:CDS | 40.0% |
| TGTGTTGCAATGTGATTCTG+AGG | + | chr3_2:13285751-13285770 | None:intergenic | 40.0% | |
| TAGGCTAGAATGGATGCTTA+CGG | - | chr3_2:13285974-13285993 | Msa0395890:CDS | 40.0% | |
| AAGAATCCCTCTCTGCTAAA+TGG | - | chr3_2:13286010-13286029 | Msa0395890:CDS | 40.0% | |
| CCAGAATAATACATGGGAAC+AGG | + | chr3_2:13286439-13286458 | None:intergenic | 40.0% | |
| CCTGTTCCCATGTATTATTC+TGG | - | chr3_2:13286436-13286455 | Msa0395890:intron | 40.0% | |
| GTATAGGAAAACAGGGTTAC+TGG | + | chr3_2:13286510-13286529 | None:intergenic | 40.0% | |
| TCAGGTATAGATTTCCTGCT+TGG | - | chr3_2:13286790-13286809 | Msa0395890:intron | 40.0% | |
| TGATATAGAAGCTACCAAGC+AGG | + | chr3_2:13286807-13286826 | None:intergenic | 40.0% | |
| !! | CAGCAAGAGACCGTTATTTT+TGG | + | chr3_2:13286894-13286913 | None:intergenic | 40.0% |
| ACTCACAATAGTTGCTGTGT+CGG | + | chr3_2:13287134-13287153 | None:intergenic | 40.0% | |
| TAGTGCACTATTGAGAACAC+TGG | + | chr3_2:13287196-13287215 | None:intergenic | 40.0% | |
| !!! | TGCTATTTTGGCTACTATGC+TGG | + | chr3_2:13287293-13287312 | None:intergenic | 40.0% |
| GTTGTTGTCATGTGACTGTA+AGG | - | chr3_2:13287577-13287596 | Msa0395890:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | - | chr3_2:13287621-13287640 | Msa0395890:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | - | chr3_2:13287622-13287641 | Msa0395890:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr3_2:13287653-13287672 | Msa0395890:intron | 40.0% | |
| TGTTGTATAAAAGGGCAACC+CGG | + | chr3_2:13287719-13287738 | None:intergenic | 40.0% | |
| CTACTTAGTGAGATAAGGCT+TGG | + | chr3_2:13287759-13287778 | None:intergenic | 40.0% | |
| CGACACTACTTAGTGAGATA+AGG | + | chr3_2:13287764-13287783 | None:intergenic | 40.0% | |
| ! | GAGGTACAAGTCTTCCATTT+TGG | - | chr3_2:13288026-13288045 | Msa0395890:intron | 40.0% |
| TACCAGTTCCACTATTCTTC+AGG | - | chr3_2:13288150-13288169 | Msa0395890:intron | 40.0% | |
| ! | AACCTGAAGAATAGTGGAAC+TGG | + | chr3_2:13288155-13288174 | None:intergenic | 40.0% |
| GTTGTCCTATGGTTTGATAC+TGG | - | chr3_2:13288479-13288498 | Msa0395890:intron | 40.0% | |
| ! | ATGTGTTTTCGGAGTGTAAG+GGG | + | chr3_2:13288552-13288571 | None:intergenic | 40.0% |
| ! | CAATGTGTTTTCGGAGTGTA+AGG | + | chr3_2:13288554-13288573 | None:intergenic | 40.0% |
| CTTACACTCCGAAAACACAT+TGG | - | chr3_2:13288552-13288571 | Msa0395890:intron | 40.0% | |
| ! | GTCTGTGACCAATGTGTTTT+CGG | + | chr3_2:13288563-13288582 | None:intergenic | 40.0% |
| AACCCATTGCCATTGGATTT+GGG | - | chr3_2:13288600-13288619 | Msa0395890:intron | 40.0% | |
| ! | GTTTTCTTCCCCAAATCCAA+TGG | + | chr3_2:13288612-13288631 | None:intergenic | 40.0% |
| TTGGATTTGGGGAAGAAAAC+GGG | - | chr3_2:13288612-13288631 | Msa0395890:intron | 40.0% | |
| GCAAATCAATCTTCACAGCA+GGG | + | chr3_2:13288670-13288689 | None:intergenic | 40.0% | |
| TGCAGAGAAAAAAGTTGAGC+AGG | + | chr3_2:13288785-13288804 | None:intergenic | 40.0% | |
| !!! | TTGGTTGGTTTTGGAAGGCA+TGG | + | chr3_2:13282511-13282530 | None:intergenic | 45.0% |
| !!! | TCGCTTTGGTTGGTTTTGGA+AGG | + | chr3_2:13282516-13282535 | None:intergenic | 45.0% |
| GACGATTGGGAAGAAAACGA+AGG | - | chr3_2:13282612-13282631 | Msa0395890:three_prime_UTR | 45.0% | |
| ! | GGAAGTGCAGGAACTGAAAT+TGG | + | chr3_2:13282676-13282695 | None:intergenic | 45.0% |
| ! | ATGTTGGAACAAGGAAGTGC+AGG | + | chr3_2:13282688-13282707 | None:intergenic | 45.0% |
| AGACGTGATTCCACCAAACT+CGG | - | chr3_2:13284004-13284023 | Msa0395890:intron | 45.0% | |
| AGGATTAACTCCGAGTTTGG+TGG | + | chr3_2:13284017-13284036 | None:intergenic | 45.0% | |
| ACCAAACTCGGAGTTAATCC+TGG | - | chr3_2:13284016-13284035 | Msa0395890:intron | 45.0% | |
| TTGCATGCTATATGCTTGCC+AGG | + | chr3_2:13284037-13284056 | None:intergenic | 45.0% | |
| !! | AGTGTGTGTTTGGTTCTAGG+TGG | - | chr3_2:13284706-13284725 | Msa0395890:CDS | 45.0% |
| ! | AGCCTTATCCCACTAAAGTG+GGG | + | chr3_2:13285104-13285123 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAAG+TGG | + | chr3_2:13285106-13285125 | None:intergenic | 45.0% |
| CACTTTAGTGGGATAAGGCT+TGG | - | chr3_2:13285104-13285123 | Msa0395890:intron | 45.0% | |
| TTGCGTGCACATGTTGCTAA+CGG | - | chr3_2:13285279-13285298 | Msa0395890:intron | 45.0% | |
| GTTCTGCTTTCATAACCAGG+TGG | - | chr3_2:13285309-13285328 | Msa0395890:intron | 45.0% | |
| CCTCACAAGATCTTCATCCA+TGG | + | chr3_2:13285533-13285552 | None:intergenic | 45.0% | |
| CCATGGATGAAGATCTTGTG+AGG | - | chr3_2:13285530-13285549 | Msa0395890:intron | 45.0% | |
| CTTGCCTAGTTCCTCAGATA+AGG | - | chr3_2:13285645-13285664 | Msa0395890:intron | 45.0% | |
| AGGCTAGAATGGATGCTTAC+GGG | - | chr3_2:13285975-13285994 | Msa0395890:CDS | 45.0% | |
| ACAGCACCATTTAGCAGAGA+GGG | + | chr3_2:13286019-13286038 | None:intergenic | 45.0% | |
| !! | GCTAAATGGTGCTGTGGTTA+TGG | - | chr3_2:13286024-13286043 | Msa0395890:CDS | 45.0% |
| TCAAGTACGTTTCTCACCTG+AGG | + | chr3_2:13286072-13286091 | None:intergenic | 45.0% | |
| GTTAGAGTCTACAAGGGGAT+AGG | + | chr3_2:13286376-13286395 | None:intergenic | 45.0% | |
| !!! | AGCCTTTTTTCAGCTCAAGC+AGG | - | chr3_2:13286713-13286732 | Msa0395890:intron | 45.0% |
| !!! | GCCTTTTTTCAGCTCAAGCA+GGG | - | chr3_2:13286714-13286733 | Msa0395890:intron | 45.0% |
| !!! | CCTTTTTTCAGCTCAAGCAG+GGG | - | chr3_2:13286715-13286734 | Msa0395890:intron | 45.0% |
| TTCAAGGGTCATTGCAGTTG+AGG | - | chr3_2:13286739-13286758 | Msa0395890:intron | 45.0% | |
| CGTAGAAGTGGTTCATGGTA+TGG | - | chr3_2:13286955-13286974 | Msa0395890:intron | 45.0% | |
| !! | ATAAAGCACTGAGCCAAGCA+TGG | + | chr3_2:13287071-13287090 | None:intergenic | 45.0% |
| CTCACAATAGTTGCTGTGTC+GGG | + | chr3_2:13287133-13287152 | None:intergenic | 45.0% | |
| TCTAGATGGAATGAAGGCAG+AGG | + | chr3_2:13287158-13287177 | None:intergenic | 45.0% | |
| !! | GTCTGCACCATCTGCTATTT+TGG | + | chr3_2:13287305-13287324 | None:intergenic | 45.0% |
| !! | TAAGGCTGTGGCTTTTAGCT+TGG | - | chr3_2:13287387-13287406 | Msa0395890:intron | 45.0% |
| CAATAAACGAGGGGTAACCT+TGG | - | chr3_2:13287541-13287560 | Msa0395890:intron | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | - | chr3_2:13287583-13287602 | Msa0395890:intron | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | - | chr3_2:13287584-13287603 | Msa0395890:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr3_2:13287617-13287636 | None:intergenic | 45.0% |
| GCTGCGTACAATACACCAAA+TGG | - | chr3_2:13287649-13287668 | Msa0395890:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr3_2:13287652-13287671 | Msa0395890:intron | 45.0% | |
| GTTGCAGGATTTGGAAAAGG+AGG | - | chr3_2:13288007-13288026 | Msa0395890:intron | 45.0% | |
| GGCACAAACCTGAAGAATAG+TGG | + | chr3_2:13288161-13288180 | None:intergenic | 45.0% | |
| ATCCTACCAGACCTTTGACT+TGG | - | chr3_2:13288349-13288368 | Msa0395890:intron | 45.0% | |
| CTTCATGGTAGCCAAGTCAA+AGG | + | chr3_2:13288363-13288382 | None:intergenic | 45.0% | |
| ! | TACCATGAAGCACCATGAAG+TGG | - | chr3_2:13288373-13288392 | Msa0395890:intron | 45.0% |
| ATCCACTTCATGGTGCTTCA+TGG | + | chr3_2:13288378-13288397 | None:intergenic | 45.0% | |
| TTGCGGTGAAATCCACTTCA+TGG | + | chr3_2:13288388-13288407 | None:intergenic | 45.0% | |
| TTTCACCGCAACAGCTTCTT+TGG | - | chr3_2:13288397-13288416 | Msa0395890:intron | 45.0% | |
| TGGTTCCAAAGAAGCTGTTG+CGG | + | chr3_2:13288405-13288424 | None:intergenic | 45.0% | |
| ! | GGTGTTATGGAGTTGTCCTA+TGG | - | chr3_2:13288468-13288487 | Msa0395890:intron | 45.0% |
| GAACCCATTGCCATTGGATT+TGG | - | chr3_2:13288599-13288618 | Msa0395890:intron | 45.0% | |
| ACCCATTGCCATTGGATTTG+GGG | - | chr3_2:13288601-13288620 | Msa0395890:intron | 45.0% | |
| TCCCCAAATCCAATGGCAAT+GGG | + | chr3_2:13288605-13288624 | None:intergenic | 45.0% | |
| TTCCCCAAATCCAATGGCAA+TGG | + | chr3_2:13288606-13288625 | None:intergenic | 45.0% | |
| GGAAGAAAACGGGACAAAAC+CGG | - | chr3_2:13288622-13288641 | Msa0395890:intron | 45.0% | |
| GGGACAAAACCGGAAACAAT+TGG | - | chr3_2:13288632-13288651 | Msa0395890:intron | 45.0% | |
| CCTTCAGTGCCAATTGTTTC+CGG | + | chr3_2:13288644-13288663 | None:intergenic | 45.0% | |
| CGCAAATCAATCTTCACAGC+AGG | + | chr3_2:13288671-13288690 | None:intergenic | 45.0% | |
| !! | TCGCAGCATTGACATTTCCA+TGG | - | chr3_2:13288718-13288737 | Msa0395890:CDS | 45.0% |
| !! | TTAATAAATCAATAATAATT+TGG | + | chr3_2:13285935-13285954 | None:intergenic | 5.0% |
| !!! | AAAAAAACATTAAAATTTTA+AGG | - | chr3_2:13287369-13287388 | Msa0395890:intron | 5.0% |
| CATGGTTGCGAGTGTGAAGA+AGG | + | chr3_2:13282493-13282512 | None:intergenic | 50.0% | |
| TCTGTCACTGCTGTGCTTGT+TGG | + | chr3_2:13283987-13284006 | None:intergenic | 50.0% | |
| GCCAGGATTAACTCCGAGTT+TGG | + | chr3_2:13284020-13284039 | None:intergenic | 50.0% | |
| !! | TGTTGGGATTTTGGGGACCT+AGG | - | chr3_2:13284255-13284274 | Msa0395890:intron | 50.0% |
| AGAACATCGCCCCACTTTAG+TGG | - | chr3_2:13285092-13285111 | Msa0395890:intron | 50.0% | |
| GAACATCGCCCCACTTTAGT+GGG | - | chr3_2:13285093-13285112 | Msa0395890:intron | 50.0% | |
| GTGCACATGTTGCTAACGGT+TGG | - | chr3_2:13285283-13285302 | Msa0395890:intron | 50.0% | |
| GAGAGCAGATGTTGGAGTTG+TGG | - | chr3_2:13285334-13285353 | Msa0395890:intron | 50.0% | |
| GTTAACGGGAAGGACTCAAG+AGG | - | chr3_2:13285673-13285692 | Msa0395890:CDS | 50.0% | |
| CACAGCACCATTTAGCAGAG+AGG | + | chr3_2:13286020-13286039 | None:intergenic | 50.0% | |
| ! | CTCTCTGCTAAATGGTGCTG+TGG | - | chr3_2:13286018-13286037 | Msa0395890:CDS | 50.0% |
| ! | GACGAGAGCATAGTCCAATG+AGG | + | chr3_2:13286138-13286157 | None:intergenic | 50.0% |
| AAGGGATTCCCCTTACAGCA+GGG | - | chr3_2:13286264-13286283 | Msa0395890:intron | 50.0% | |
| AGCAAAAGCCCTGCTGTAAG+GGG | + | chr3_2:13286275-13286294 | None:intergenic | 50.0% | |
| GAGCAAAAGCCCTGCTGTAA+GGG | + | chr3_2:13286276-13286295 | None:intergenic | 50.0% | |
| TGAGCAAAAGCCCTGCTGTA+AGG | + | chr3_2:13286277-13286296 | None:intergenic | 50.0% | |
| CCCCTGCTTGAGCTGAAAAA+AGG | + | chr3_2:13286718-13286737 | None:intergenic | 50.0% | |
| AGTTGAGGCTAGTGCCAAGA+TGG | - | chr3_2:13286754-13286773 | Msa0395890:intron | 50.0% | |
| AGAGTCAATGGCAGCCAGAA+AGG | - | chr3_2:13286929-13286948 | Msa0395890:intron | 50.0% | |
| CCACTTCTACGACTCCTTTC+TGG | + | chr3_2:13286946-13286965 | None:intergenic | 50.0% | |
| CCAGAAAGGAGTCGTAGAAG+TGG | - | chr3_2:13286943-13286962 | Msa0395890:intron | 50.0% | |
| GGAGTCGTAGAAGTGGTTCA+TGG | - | chr3_2:13286950-13286969 | Msa0395890:intron | 50.0% | |
| CAGTGCTTTATGCACGTGAC+CGG | - | chr3_2:13287080-13287099 | Msa0395890:intron | 50.0% | |
| ! | GTGACCGGTATTTGAAGCCT+GGG | - | chr3_2:13287095-13287114 | Msa0395890:intron | 50.0% |
| ! | TGACCGGTATTTGAAGCCTG+GGG | - | chr3_2:13287096-13287115 | Msa0395890:intron | 50.0% |
| AGTTGCTGTGTCGGGAAGAA+TGG | + | chr3_2:13287125-13287144 | None:intergenic | 50.0% | |
| ACATGTCTTGCAGCAGCCAT+GGG | + | chr3_2:13287235-13287254 | None:intergenic | 50.0% | |
| TACATGTCTTGCAGCAGCCA+TGG | + | chr3_2:13287236-13287255 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr3_2:13287561-13287580 | None:intergenic | 50.0% | |
| TGACATGTCTTGCATTGGGG+AGG | - | chr3_2:13288066-13288085 | Msa0395890:intron | 50.0% | |
| AGCCAAGTCAAAGGTCTGGT+AGG | + | chr3_2:13288354-13288373 | None:intergenic | 50.0% | |
| TGGTAGCCAAGTCAAAGGTC+TGG | + | chr3_2:13288358-13288377 | None:intergenic | 50.0% | |
| ! | ATCCAATGGCAATGGGTTCC+CGG | + | chr3_2:13288598-13288617 | None:intergenic | 50.0% |
| ! | CCGGAAACAATTGGCACTGA+AGG | - | chr3_2:13288641-13288660 | Msa0395890:intron | 50.0% |
| TGCTGCGATGCTCAGTAGAA+CGG | + | chr3_2:13288706-13288725 | None:intergenic | 50.0% | |
| GACATTTCCATGGAAGCTGC+TGG | - | chr3_2:13288728-13288747 | Msa0395890:CDS | 50.0% | |
| ACTTACACCAGCAGCTTCCA+TGG | + | chr3_2:13288738-13288757 | None:intergenic | 50.0% | |
| CTGGTGTAAGTCCTGATGGT+CGG | - | chr3_2:13288747-13288766 | Msa0395890:CDS | 50.0% | |
| CGCCCCACTTTAGTGGGATA+AGG | - | chr3_2:13285099-13285118 | Msa0395890:intron | 55.0% | |
| AACATCTGCTCTCTGCCACC+TGG | + | chr3_2:13285327-13285346 | None:intergenic | 55.0% | |
| AGGTGGCAGAGAGCAGATGT+TGG | - | chr3_2:13285326-13285345 | Msa0395890:intron | 55.0% | |
| ! | GGTGCTGTGGTTATGGACGT+CGG | - | chr3_2:13286031-13286050 | Msa0395890:CDS | 55.0% |
| CTGCTGTAAGGGGAATCCCT+TGG | + | chr3_2:13286265-13286284 | None:intergenic | 55.0% | |
| CAAGGGATTCCCCTTACAGC+AGG | - | chr3_2:13286263-13286282 | Msa0395890:intron | 55.0% | |
| AGCTCAAGCAGGGGCTTCAA+GGG | - | chr3_2:13286724-13286743 | Msa0395890:intron | 55.0% | |
| TAGTGCCAAGATGGCAGCAG+TGG | - | chr3_2:13286763-13286782 | Msa0395890:intron | 55.0% | |
| AGATGCCACTGCTGCCATCT+TGG | + | chr3_2:13286771-13286790 | None:intergenic | 55.0% | |
| ! | CGTGACCGGTATTTGAAGCC+TGG | - | chr3_2:13287094-13287113 | Msa0395890:intron | 55.0% |
| ! | GACCGGTATTTGAAGCCTGG+GGG | - | chr3_2:13287097-13287116 | Msa0395890:intron | 55.0% |
| CACCCCCAGGCTTCAAATAC+CGG | + | chr3_2:13287102-13287121 | None:intergenic | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr3_2:13287596-13287615 | Msa0395890:intron | 55.0% | |
| ACAGCACAGCTGGTGTATCC+CGG | + | chr3_2:13288523-13288542 | None:intergenic | 55.0% | |
| TTCCGGGAACCCATTGCCAT+TGG | - | chr3_2:13288593-13288612 | Msa0395890:intron | 55.0% | |
| GCTGCTGGTGTAAGTCCTGA+TGG | - | chr3_2:13288743-13288762 | Msa0395890:CDS | 55.0% | |
| ! | GTGGTTATGGACGTCGGCTG+TGG | - | chr3_2:13286037-13286056 | Msa0395890:CDS | 60.0% |
| ! | ATGGACGTCGGCTGTGGAAC+TGG | - | chr3_2:13286043-13286062 | Msa0395890:CDS | 60.0% |
| GCTGTGGAACTGGCATCCTC+AGG | - | chr3_2:13286053-13286072 | Msa0395890:CDS | 60.0% | |
| CAGCTCAAGCAGGGGCTTCA+AGG | - | chr3_2:13286723-13286742 | Msa0395890:intron | 60.0% | |
| GATGGCAGCAGTGGCATCTC+AGG | - | chr3_2:13286772-13286791 | Msa0395890:intron | 60.0% | |
| TAGGGTAGCAGAGCAGCCCA+TGG | - | chr3_2:13287216-13287235 | Msa0395890:intron | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr3_2:13287550-13287569 | Msa0395890:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr3_2:13287665-13287684 | Msa0395890:intron | 60.0% |
| CTGAAGCTCCCGCATACGCA+GGG | + | chr3_2:13287692-13287711 | None:intergenic | 60.0% | |
| ACTGAAGCTCCCGCATACGC+AGG | + | chr3_2:13287693-13287712 | None:intergenic | 60.0% | |
| ATGCGGGAGCTTCAGTGCAC+CGG | - | chr3_2:13287697-13287716 | Msa0395890:intron | 60.0% | |
| GGGGATGTTGACAGCACAGC+TGG | + | chr3_2:13288533-13288552 | None:intergenic | 60.0% | |
| CAAGTGCGTCTCCGACCATC+AGG | + | chr3_2:13288761-13288780 | None:intergenic | 60.0% | |
| CTGATGGTCGGAGACGCACT+TGG | - | chr3_2:13288759-13288778 | Msa0395890:CDS | 60.0% | |
| TCGGGAAGAATGGCACCCCC+AGG | + | chr3_2:13287115-13287134 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr3_2:13287667-13287686 | None:intergenic | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr3_2:13287680-13287699 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr3_2:13287681-13287700 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr3_2:13287680-13287699 | Msa0395890:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr3_2:13287681-13287700 | Msa0395890:intron | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+GGG | - | chr3_2:13287698-13287717 | Msa0395890:intron | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | chr3_2:13287682-13287701 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | chr3_2:13287686-13287705 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | chr3_2:13287687-13287706 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 13282487 | 13289005 | 13282487 | ID=Msa0395890;Name=Msa0395890 |
| chr3_2 | mRNA | 13282487 | 13289005 | 13282487 | ID=Msa0395890-mRNA-1;Parent=Msa0395890;Name=Msa0395890-mRNA-1;_AED=0.08;_eAED=0.08;_QI=23|0.71|0.62|0.87|1|1|8|197|637 |
| chr3_2 | exon | 13282487 | 13283133 | 13282487 | ID=Msa0395890-mRNA-1:exon:3066;Parent=Msa0395890-mRNA-1 |
| chr3_2 | exon | 13283321 | 13283478 | 13283321 | ID=Msa0395890-mRNA-1:exon:3065;Parent=Msa0395890-mRNA-1 |
| chr3_2 | exon | 13284176 | 13284273 | 13284176 | ID=Msa0395890-mRNA-1:exon:3064;Parent=Msa0395890-mRNA-1 |
| chr3_2 | exon | 13284391 | 13284605 | 13284391 | ID=Msa0395890-mRNA-1:exon:3063;Parent=Msa0395890-mRNA-1 |
| chr3_2 | exon | 13284699 | 13284777 | 13284699 | ID=Msa0395890-mRNA-1:exon:3062;Parent=Msa0395890-mRNA-1 |
| chr3_2 | exon | 13285418 | 13285515 | 13285418 | ID=Msa0395890-mRNA-1:exon:3061;Parent=Msa0395890-mRNA-1 |
| chr3_2 | exon | 13285646 | 13286164 | 13285646 | ID=Msa0395890-mRNA-1:exon:3060;Parent=Msa0395890-mRNA-1 |
| chr3_2 | exon | 13288686 | 13289005 | 13288686 | ID=Msa0395890-mRNA-1:exon:3059;Parent=Msa0395890-mRNA-1 |
| chr3_2 | five_prime_UTR | 13288983 | 13289005 | 13288983 | ID=Msa0395890-mRNA-1:five_prime_utr;Parent=Msa0395890-mRNA-1 |
| chr3_2 | CDS | 13288686 | 13288982 | 13288686 | ID=Msa0395890-mRNA-1:cds;Parent=Msa0395890-mRNA-1 |
| chr3_2 | CDS | 13285646 | 13286164 | 13285646 | ID=Msa0395890-mRNA-1:cds;Parent=Msa0395890-mRNA-1 |
| chr3_2 | CDS | 13285418 | 13285515 | 13285418 | ID=Msa0395890-mRNA-1:cds;Parent=Msa0395890-mRNA-1 |
| chr3_2 | CDS | 13284699 | 13284777 | 13284699 | ID=Msa0395890-mRNA-1:cds;Parent=Msa0395890-mRNA-1 |
| chr3_2 | CDS | 13284391 | 13284605 | 13284391 | ID=Msa0395890-mRNA-1:cds;Parent=Msa0395890-mRNA-1 |
| chr3_2 | CDS | 13284176 | 13284273 | 13284176 | ID=Msa0395890-mRNA-1:cds;Parent=Msa0395890-mRNA-1 |
| chr3_2 | CDS | 13283321 | 13283478 | 13283321 | ID=Msa0395890-mRNA-1:cds;Parent=Msa0395890-mRNA-1 |
| chr3_2 | CDS | 13282684 | 13283133 | 13282684 | ID=Msa0395890-mRNA-1:cds;Parent=Msa0395890-mRNA-1 |
| chr3_2 | three_prime_UTR | 13282487 | 13282683 | 13282487 | ID=Msa0395890-mRNA-1:three_prime_utr;Parent=Msa0395890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
