AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0548070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548070 MtrunA17_Chr4g0031081 96.958 263 8 0 1 263 1 263 0.0 508
Msa0548070 MtrunA17_Chr3g0110401 67.391 92 30 0 90 181 25 116 3.54e-39 135
Msa0548070 MtrunA17_Chr7g0223041 40.659 182 87 3 1 181 1 162 3.74e-34 125
Msa0548070 MtrunA17_Chr5g0438421 61.017 59 23 0 123 181 9 67 2.53e-16 73.2
Msa0548070 MtrunA17_Chr3g0145881 70.455 44 13 0 129 172 5 48 1.54e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548070 AT5G59950.5 52.985 268 98 6 1 263 1 245 2.42e-74 227
Msa0548070 AT5G59950.1 54.851 268 92 6 1 263 1 244 1.06e-73 225
Msa0548070 AT5G59950.3 54.104 268 92 7 1 263 1 242 1.92e-70 217
Msa0548070 AT5G59950.4 59.596 198 63 5 1 193 1 186 6.32e-69 212
Msa0548070 AT5G02530.2 60.096 208 66 5 1 192 1 207 4.30e-66 207
Msa0548070 AT5G02530.1 60.096 208 66 5 1 192 1 207 5.20e-66 207
Msa0548070 AT5G59950.2 63.793 174 50 2 90 263 18 178 1.49e-54 174
Msa0548070 AT5G37720.1 38.532 218 80 6 1 191 1 191 9.89e-37 132
Msa0548070 AT5G37720.2 38.532 218 80 6 1 191 1 191 1.04e-36 131
Msa0548070 AT1G66260.2 37.674 215 87 6 1 185 1 198 2.36e-36 131
Msa0548070 AT1G66260.1 37.674 215 87 6 1 185 1 198 2.36e-36 131

Find 170 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTACATATATTTATGTATT+TGG 0.107533 4_1:+41775976 Msa0548070:three_prime_UTR
CAAGCTCTATATTTCTAATT+TGG 0.115469 4_1:+41772810 Msa0548070:CDS
AGATAAAATATTACTGCTTT+TGG 0.178915 4_1:-41776367 None:intergenic
GAGATGTTCATACTTGTTAT+AGG 0.231805 4_1:+41776445 Msa0548070:three_prime_UTR
TCTTTCCTGACTGGTAATTT+TGG 0.259701 4_1:+41776476 Msa0548070:three_prime_UTR
TGTTTCCAATGATGATATTA+AGG 0.267927 4_1:+41772840 Msa0548070:CDS
GATTGTGCTGGTCAAGATTC+AGG 0.279416 4_1:+41776556 Msa0548070:three_prime_UTR
CTATTTACCTTTATATTGTA+TGG 0.279550 4_1:+41776778 Msa0548070:three_prime_UTR
AGATGTTCATACTTGTTATA+GGG 0.301430 4_1:+41776446 Msa0548070:three_prime_UTR
TACAACAATGTTCAACTAGA+TGG 0.304919 4_1:+41774945 Msa0548070:CDS
GTGTATCCTTTCCCACAAAT+AGG 0.305192 4_1:-41776882 None:intergenic
GTGAAAACTGTTGCTTGATA+TGG 0.317573 4_1:+41776032 Msa0548070:three_prime_UTR
GTGTGGCTGTTAAAATTTAC+AGG 0.324972 4_1:+41776843 Msa0548070:three_prime_UTR
CCAACAATCTCTATCTTCAT+TGG 0.329913 4_1:-41774972 None:intergenic
TACAGTGGAATCTTCAAATA+AGG 0.334507 4_1:+41776312 Msa0548070:three_prime_UTR
CTGTTGCTTGATATGGAGTT+TGG 0.336982 4_1:+41776039 Msa0548070:three_prime_UTR
TATATTTCTAATTTGGATTA+CGG 0.346613 4_1:+41772817 Msa0548070:CDS
ATATATATAATCTTATAATA+AGG 0.348035 4_1:+41776411 Msa0548070:three_prime_UTR
TCCAGGTCCGGAAGCGGGTG+CGG 0.349785 4_1:-41772525 None:intergenic
CTCATCTAGTTTCTCTATGT+TGG 0.351048 4_1:+41776665 Msa0548070:three_prime_UTR
TCTAAAATATTCGTATTCCT+TGG 0.355488 4_1:+41776072 Msa0548070:three_prime_UTR
GAGCGATTAACGGCACGGTT+AGG 0.365394 4_1:-41772563 None:intergenic
CTAAAATATTCGTATTCCTT+GGG 0.365680 4_1:+41776073 Msa0548070:three_prime_UTR
TCTAGACCCGCACCCGCTTC+CGG 0.371860 4_1:+41772518 Msa0548070:CDS
CGTGCTCCTTCTATTGAAAC+TGG 0.375300 4_1:+41772784 Msa0548070:CDS
AACTCCAATGGTAGACCATT+TGG 0.376901 4_1:-41776615 None:intergenic
TTATCTTGTTATTTCTATGC+TGG 0.379219 4_1:+41776384 Msa0548070:three_prime_UTR
TCCTCTAGGGTTACCGGATC+CGG 0.383733 4_1:-41772489 None:intergenic
TCATCTAGTTTCTCTATGTT+GGG 0.392614 4_1:+41776666 Msa0548070:three_prime_UTR
TGTTGCTTGATATGGAGTTT+GGG 0.404819 4_1:+41776040 Msa0548070:three_prime_UTR
CCAGGTCCGGAAGCGGGTGC+GGG 0.406344 4_1:-41772524 None:intergenic
ACGGCCTCCTCTAGGGTTAC+CGG 0.408112 4_1:-41772495 None:intergenic
TAGGGTTGTGGTAGGAGTGG+CGG 0.408293 4_1:-41776342 None:intergenic
ACACACCCCATACAATATAA+AGG 0.409402 4_1:-41776785 None:intergenic
TAATACCTTAATATCATCAT+TGG 0.413189 4_1:-41772845 None:intergenic
CTGAAGTTGGTGACTTGAAA+CGG 0.414517 4_1:+41774742 Msa0548070:CDS
CCAATGGCTGCATTTACAAC+AGG 0.420547 4_1:-41775023 None:intergenic
CCCGCACCCGCTTCCGGACC+TGG 0.421067 4_1:+41772524 Msa0548070:CDS
TGTATCCTTTCCCACAAATA+GGG 0.422072 4_1:-41776881 None:intergenic
GGTCTAGAACGGCCTCCTCT+AGG 0.429552 4_1:-41772503 None:intergenic
TGAACTTCTCAACTGTGGTT+GGG 0.431111 4_1:+41776724 Msa0548070:three_prime_UTR
TTGGTTCCAGTTTCAATAGA+AGG 0.437733 4_1:-41772790 None:intergenic
TGGATTAATGAAGTGGGAGG+TGG 0.437745 4_1:+41776189 Msa0548070:three_prime_UTR
TGAGAGAGAAGAAGAGAAGA+AGG 0.438435 4_1:-41772320 None:intergenic
GGTATATGCCTCCCTATTTG+TGG 0.442285 4_1:+41776870 Msa0548070:three_prime_UTR
AGCAGTGGGCAAGGCAGAGT+TGG 0.442400 4_1:+41775692 Msa0548070:intron
AGTTGGAGAATTTCGAGGGC+TGG 0.446718 4_1:+41775709 Msa0548070:CDS
GGTGGTCGCGGTGGAGGTCG+TGG 0.448479 4_1:+41775797 Msa0548070:CDS
CGCGGTGGAGGTCGTGGTAG+AGG 0.452743 4_1:+41775803 Msa0548070:CDS
CAGAAATAGCATTCCCTGCT+CGG 0.454202 4_1:+41776587 Msa0548070:three_prime_UTR
AGCGGGTCCAGGTCCGGAAG+CGG 0.454438 4_1:-41772531 None:intergenic
CGTGGTGGTGGTCGCGGTGG+AGG 0.456461 4_1:+41775791 Msa0548070:CDS
TATTTACCTTTATATTGTAT+GGG 0.457164 4_1:+41776779 Msa0548070:three_prime_UTR
GGACCCCGTGGTGGTGGTCG+CGG 0.459565 4_1:+41775785 Msa0548070:CDS
CTGAACTTCTCAACTGTGGT+TGG 0.460653 4_1:+41776723 Msa0548070:three_prime_UTR
ACGACGAGCGGGTCCAGGTC+CGG 0.461789 4_1:-41772537 None:intergenic
GCATATATAATTTAGCAAGA+TGG 0.461963 4_1:+41776498 Msa0548070:three_prime_UTR
GTTGGAGAATTTCGAGGGCT+GGG 0.462387 4_1:+41775710 Msa0548070:CDS
GGATTAATGAAGTGGGAGGT+GGG 0.466689 4_1:+41776190 Msa0548070:three_prime_UTR
CAAGCCACTGAATACCTTTG+AGG 0.471394 4_1:-41775062 None:intergenic
CAAATTAGAAATATAGAGCT+TGG 0.472207 4_1:-41772809 None:intergenic
AGGGTTGTGGTAGGAGTGGC+GGG 0.475221 4_1:-41776341 None:intergenic
AGCGATTAACGGCACGGTTA+GGG 0.477079 4_1:-41772562 None:intergenic
AGTTACCTTAGCGGCGGAGT+AGG 0.477172 4_1:-41772591 None:intergenic
AGAAATCGAGGACGTGGAAG+AGG 0.478286 4_1:+41775755 Msa0548070:CDS
AGCGGTGGACCCCGTGGTGG+TGG 0.478579 4_1:+41775779 Msa0548070:CDS
TTGTAATGTGCATGCACTCT+AGG 0.479490 4_1:+41776128 Msa0548070:three_prime_UTR
AAATATTTGGCTGCAAAATG+TGG 0.482285 4_1:+41776243 Msa0548070:three_prime_UTR
GTCTAGAACGGCCTCCTCTA+GGG 0.482394 4_1:-41772502 None:intergenic
GTAGGGTGCGGAGCGATTAA+CGG 0.483343 4_1:-41772573 None:intergenic
GCACGACCACCTTGAGCTGC+TGG 0.485097 4_1:-41772766 None:intergenic
CCAATGAAGATAGAGATTGT+TGG 0.485750 4_1:+41774972 Msa0548070:CDS
GCGGGTCCAGGTCCGGAAGC+GGG 0.486070 4_1:-41772530 None:intergenic
TTTCCCTTCCCTAAAACATA+GGG 0.487158 4_1:-41776001 None:intergenic
TCATGCTGCCATGTCGTCTC+CGG 0.491863 4_1:-41772706 None:intergenic
ACTCCTTCAGTTTATTTGCA+TGG 0.493496 4_1:-41775888 None:intergenic
TTTCGAGGGCTGGGAGGAAG+AGG 0.493981 4_1:+41775719 Msa0548070:CDS
CTGTTAAAATTTACAGGCGT+CGG 0.495963 4_1:+41776849 Msa0548070:three_prime_UTR
GTTACCTTAGCGGCGGAGTA+GGG 0.497035 4_1:-41772590 None:intergenic
TGCCTCCCTATTTGTGGGAA+AGG 0.497409 4_1:+41776876 Msa0548070:three_prime_UTR
CCCTGCTCGGGAATTCCAAA+TGG 0.499895 4_1:+41776600 Msa0548070:three_prime_UTR
GTTCAACGAGATGGAGGAAG+AGG 0.502361 4_1:-41772395 None:intergenic
ATATGCCAAAATTACCAGTC+AGG 0.510724 4_1:-41776481 None:intergenic
GTATATGCCTCCCTATTTGT+GGG 0.512196 4_1:+41776871 Msa0548070:three_prime_UTR
GGGATACGACGAGCGGGTCC+AGG 0.515614 4_1:-41772542 None:intergenic
TCCACCGCGACCACCACCAC+GGG 0.516036 4_1:-41775789 None:intergenic
AGAAATAGCATTCCCTGCTC+GGG 0.517762 4_1:+41776588 Msa0548070:three_prime_UTR
CAACAAGTGGATTAATGAAG+TGG 0.519371 4_1:+41776182 Msa0548070:three_prime_UTR
ACCATTTGGAATTCCCGAGC+AGG 0.523118 4_1:-41776601 None:intergenic
TTATGATTAAACTGTTACAG+TGG 0.524352 4_1:+41776297 Msa0548070:three_prime_UTR
AAGCGGGTGCGGGTCTAGAA+CGG 0.525065 4_1:-41772514 None:intergenic
GAACTTCTCAACTGTGGTTG+GGG 0.526239 4_1:+41776725 Msa0548070:three_prime_UTR
GATGTTCATACTTGTTATAG+GGG 0.529174 4_1:+41776447 Msa0548070:three_prime_UTR
TTAATTTGTTTATCAACAAG+TGG 0.529927 4_1:+41776169 Msa0548070:three_prime_UTR
GCAGGGAATGCTATTTCTGT+TGG 0.530675 4_1:-41776583 None:intergenic
AATTCCAAATGGTCTACCAT+TGG 0.535393 4_1:+41776611 Msa0548070:three_prime_UTR
AGAAGATCTTGATGCTGAGC+TGG 0.536011 4_1:+41775847 Msa0548070:CDS
CATATCGAGTGCTGCAGACA+TGG 0.539710 4_1:-41772432 None:intergenic
CCCCGTGGTGGTGGTCGCGG+TGG 0.540272 4_1:+41775788 Msa0548070:CDS
CCTGTTGTAAATGCAGCCAT+TGG 0.541269 4_1:+41775023 Msa0548070:CDS
AATTCCATTAAAATTTCCAA+TGG 0.541998 4_1:-41775039 None:intergenic
ACAACAATGTTCAACTAGAT+GGG 0.548777 4_1:+41774946 Msa0548070:CDS
GGGCTGGGAGGAAGAGGTCA+AGG 0.549335 4_1:+41775725 Msa0548070:CDS
CGCACCCTACTCCGCCGCTA+AGG 0.555043 4_1:+41772586 Msa0548070:CDS
TGCACCAGGTGTAGATATGT+TGG 0.555986 4_1:-41774997 None:intergenic
ATTTACCTTTATATTGTATG+GGG 0.558127 4_1:+41776780 Msa0548070:three_prime_UTR
TGGTAGAGGCCGCGACGAGA+AGG 0.558157 4_1:+41775817 Msa0548070:CDS
GGGAGTACGTCTTTCCTGAC+TGG 0.558277 4_1:+41776467 Msa0548070:three_prime_UTR
GGCAGAGTTGGAGAATTTCG+AGG 0.560672 4_1:+41775704 Msa0548070:CDS
AAAAGTTAGGGTTTCGTCGA+GGG 0.561491 4_1:-41772355 None:intergenic
AATTTGAGAGTTCAACGAGA+TGG 0.566696 4_1:-41772404 None:intergenic
AAAGTTAGGGTTTCGTCGAG+GGG 0.568717 4_1:-41772354 None:intergenic
GGCACGGCGTTCATTATGAC+AGG 0.569685 4_1:+41774763 Msa0548070:CDS
TCTGTCTTGAGCAGTGGGCA+AGG 0.569840 4_1:+41775683 Msa0548070:intron
CGAGGACGTGGAAGAGGTAG+CGG 0.572748 4_1:+41775761 Msa0548070:CDS
CTTAGCGGCGGAGTAGGGTG+CGG 0.573930 4_1:-41772585 None:intergenic
GCGGCGTATCCAGCAGCTCA+AGG 0.574647 4_1:+41772757 Msa0548070:CDS
GGATAGGGTTGTGGTAGGAG+TGG 0.575544 4_1:-41776345 None:intergenic
CCATTTGGAATTCCCGAGCA+GGG 0.577057 4_1:-41776600 None:intergenic
TTATTAGGTGCGCATTGTGA+TGG 0.577088 4_1:+41775950 Msa0548070:three_prime_UTR
TACGCGGACTCTGATTGTGC+TGG 0.578220 4_1:+41776544 Msa0548070:three_prime_UTR
TTTAGGCTCCGGAGACGACA+TGG 0.580892 4_1:+41772698 Msa0548070:intron
AAGCAAGTTAGTTACCTTAG+CGG 0.583970 4_1:-41772600 None:intergenic
ATGGAGGAAGAGGAAGAAGA+AGG 0.586395 4_1:-41772385 None:intergenic
GTGGAATCTTCAAATAAGGT+AGG 0.588153 4_1:+41776316 Msa0548070:three_prime_UTR
TTGAGAGTTCAACGAGATGG+AGG 0.589166 4_1:-41772401 None:intergenic
AACAAGTGGATTAATGAAGT+GGG 0.589845 4_1:+41776183 Msa0548070:three_prime_UTR
TGTCACAGTGTTAACTCCAA+TGG 0.596060 4_1:-41776627 None:intergenic
GTTTAATCATAACAAGGCAG+TGG 0.602935 4_1:-41776286 None:intergenic
TACTTGGTTAGAACGTAGTG+TGG 0.603333 4_1:+41776826 Msa0548070:three_prime_UTR
GTTCTTGATGATGTCGTCGA+GGG 0.603597 4_1:-41772456 None:intergenic
TTTACAACAGGAGCTGCACC+AGG 0.606543 4_1:-41775011 None:intergenic
CTCCACCGCGACCACCACCA+CGG 0.607073 4_1:-41775790 None:intergenic
GCAGAGTTGGAGAATTTCGA+GGG 0.613892 4_1:+41775705 Msa0548070:CDS
TGACAGGAGTGGCAGATCGA+AGG 0.615589 4_1:+41774779 Msa0548070:CDS
TGCAGATCAGCATGTAGCTG+CGG 0.622127 4_1:+41772735 Msa0548070:CDS
AGGCCATGCAAATAAACTGA+AGG 0.625121 4_1:+41775885 Msa0548070:CDS
TTAACTGAACTTCTCAACTG+TGG 0.625142 4_1:+41776719 Msa0548070:three_prime_UTR
CCGCAGAAGTAGTCTTCTCA+CGG 0.626643 4_1:+41774892 Msa0548070:CDS
ATTCGAAGAAATCGAGGACG+TGG 0.626806 4_1:+41775749 Msa0548070:CDS
GGAACCAACATATCTACACC+TGG 0.632548 4_1:+41774993 Msa0548070:CDS
AATATTTGGCTGCAAAATGT+GGG 0.635559 4_1:+41776244 Msa0548070:three_prime_UTR
TCAAAGTTCATACATTCCCA+AGG 0.637524 4_1:-41776089 None:intergenic
CAAGTTAGTTACCTTAGCGG+CGG 0.638042 4_1:-41772597 None:intergenic
AGAGGTAGCGGTGGACCCCG+TGG 0.642185 4_1:+41775773 Msa0548070:CDS
GGACGTGGAAGAGGTAGCGG+TGG 0.645696 4_1:+41775764 Msa0548070:CDS
GGTAGCGGTGGACCCCGTGG+TGG 0.648727 4_1:+41775776 Msa0548070:CDS
CCGTGAGAAGACTACTTCTG+CGG 0.658109 4_1:-41774892 None:intergenic
GTTGGTGACTTGAAACGGCA+CGG 0.661190 4_1:+41774747 Msa0548070:CDS
CATCTGTTCTGCTTGCTACG+CGG 0.661788 4_1:+41776528 Msa0548070:three_prime_UTR
CAAGGCATTCGAAGAAATCG+AGG 0.662681 4_1:+41775743 Msa0548070:CDS
TCCGGATCCGGTAACCCTAG+AGG 0.663283 4_1:+41772488 Msa0548070:CDS
CGGTTAGGGATACGACGAGC+GGG 0.665248 4_1:-41772548 None:intergenic
GGCGTTCATTATGACAGGAG+TGG 0.667636 4_1:+41774768 Msa0548070:CDS
ATCCTTTCCCACAAATAGGG+AGG 0.669613 4_1:-41776878 None:intergenic
TGTTCTTGATGATGTCGTCG+AGG 0.671065 4_1:-41772457 None:intergenic
GGAGAATTTCGAGGGCTGGG+AGG 0.677900 4_1:+41775713 Msa0548070:CDS
GGATCCGGTAACCCTAGAGG+AGG 0.679060 4_1:+41772491 Msa0548070:CDS
AAGTGGATTAATGAAGTGGG+AGG 0.684223 4_1:+41776186 Msa0548070:three_prime_UTR
GTGCGGAGCGATTAACGGCA+CGG 0.684912 4_1:-41772568 None:intergenic
AGATCAGCATGTAGCTGCGG+CGG 0.689959 4_1:+41772738 Msa0548070:CDS
ATGTTGGGATTCGAAATGCA+CGG 0.691997 4_1:+41776681 Msa0548070:three_prime_UTR
TGCATTGATAGATGAGAGCG+TGG 0.694046 4_1:-41776215 None:intergenic
GCTGGAGAAGTATCATGCGG+AGG 0.695135 4_1:+41775865 Msa0548070:CDS
ACGGTTAGGGATACGACGAG+CGG 0.695701 4_1:-41772549 None:intergenic
GCGTATCCAGCAGCTCAAGG+TGG 0.706772 4_1:+41772760 Msa0548070:CDS
GTAACAGTTTAATCATAACA+AGG 0.708487 4_1:-41776292 None:intergenic
TGAGCTGGAGAAGTATCATG+CGG 0.732375 4_1:+41775862 Msa0548070:CDS
CTGCAGATACCTTCTCGTCG+CGG 0.732387 4_1:-41775826 None:intergenic
CCACCGCGACCACCACCACG+GGG 0.756993 4_1:-41775788 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG + chr4_1:41774604-41774623 Msa0548070:intron 0.0%
!!! TAAAAATAAAGTTTTCATTT+TGG - chr4_1:41773036-41773055 None:intergenic 10.0%
!! TAATTTATCCTATATATTAA+AGG + chr4_1:41774237-41774256 Msa0548070:intron 10.0%
!!! ATATATATATTCACATATTT+TGG - chr4_1:41774594-41774613 None:intergenic 10.0%
!!! ATATTTTTTTTTTGACATAT+AGG + chr4_1:41775565-41775584 Msa0548070:intron 10.0%
!!! ATTTGATTTGTTTTGATTTT+AGG + chr4_1:41772681-41772700 Msa0548070:intron 15.0%
!!! TATATTTCTAATTTGGATTA+CGG + chr4_1:41772817-41772836 Msa0548070:CDS 15.0%
!! GGTATTTAGAAAAATTATTA+AGG + chr4_1:41773242-41773261 Msa0548070:intron 15.0%
!! AAAATCATAAATATACGTTA+AGG + chr4_1:41773279-41773298 Msa0548070:intron 15.0%
!!! AAAAATTCAGATTGATTTAA+AGG - chr4_1:41773629-41773648 None:intergenic 15.0%
!! TGAATTCTAAACTTTATAAT+TGG + chr4_1:41773969-41773988 Msa0548070:intron 15.0%
!! AAAATGAACCTTTAATATAT+AGG - chr4_1:41774248-41774267 None:intergenic 15.0%
!!! TTTACTTTTTTATTTGTGAA+GGG + chr4_1:41774536-41774555 Msa0548070:intron 15.0%
!! TAAACATTAATTGTAAAACA+AGG - chr4_1:41774688-41774707 None:intergenic 15.0%
!!! AAAAAAAAACTCTTTTTCAT+AGG + chr4_1:41774866-41774885 Msa0548070:intron 15.0%
!!! AAAAAAAACTCTTTTTCATA+GGG + chr4_1:41774867-41774886 Msa0548070:intron 15.0%
!! ACTACATATATTTATGTATT+TGG + chr4_1:41775976-41775995 Msa0548070:three_prime_UTR 15.0%
!! TATTTACCTTTATATTGTAT+GGG + chr4_1:41776779-41776798 Msa0548070:three_prime_UTR 15.0%
!! ACAAAAATTTGATCAATTGA+TGG - chr4_1:41772626-41772645 None:intergenic 20.0%
!!! CAATTGATCAAATTTTTGTT+TGG + chr4_1:41772627-41772646 Msa0548070:intron 20.0%
!! TAATACCTTAATATCATCAT+TGG - chr4_1:41772848-41772867 None:intergenic 20.0%
!!! ATACCTTTTACATAAAAAGT+CGG - chr4_1:41773227-41773246 None:intergenic 20.0%
!! TTTAAATTAGGCTAATTCTA+TGG + chr4_1:41773454-41773473 Msa0548070:intron 20.0%
!!! TCTGAAATTTGATTTCTAAT+TGG + chr4_1:41773750-41773769 Msa0548070:intron 20.0%
!! TCTAAACTTTATAATTGGTA+AGG + chr4_1:41773974-41773993 Msa0548070:intron 20.0%
!!! AATTTTGAACTTCTTTTGTA+AGG - chr4_1:41774140-41774159 None:intergenic 20.0%
!! GTTTAAATTGTTCTGATAAA+TGG + chr4_1:41774385-41774404 Msa0548070:intron 20.0%
!!! CTTTACTTTTTTATTTGTGA+AGG + chr4_1:41774535-41774554 Msa0548070:intron 20.0%
!! ATGCAAAATTACAATCTAAT+AGG - chr4_1:41774567-41774586 None:intergenic 20.0%
!!! ATTCAATTTTTACATTATGC+AGG + chr4_1:41774710-41774729 Msa0548070:intron 20.0%
!! AATTCCATTAAAATTTCCAA+TGG - chr4_1:41775042-41775061 None:intergenic 20.0%
!! GTTTGACTGTATTATTAATT+TGG + chr4_1:41775619-41775638 Msa0548070:intron 20.0%
!!! TTAATTTGTTTATCAACAAG+TGG + chr4_1:41776169-41776188 Msa0548070:three_prime_UTR 20.0%
!!! GATAAAATATTACTGCTTTT+GGG - chr4_1:41776369-41776388 None:intergenic 20.0%
!!! AGATAAAATATTACTGCTTT+TGG - chr4_1:41776370-41776389 None:intergenic 20.0%
!! CTATTTACCTTTATATTGTA+TGG + chr4_1:41776778-41776797 Msa0548070:three_prime_UTR 20.0%
!! ATTTACCTTTATATTGTATG+GGG + chr4_1:41776780-41776799 Msa0548070:three_prime_UTR 20.0%
! ATCAAGAACAACAAAAAATC+CGG + chr4_1:41772470-41772489 Msa0548070:CDS 25.0%
! CAAATTAGAAATATAGAGCT+TGG - chr4_1:41772812-41772831 None:intergenic 25.0%
!! CAAGCTCTATATTTCTAATT+TGG + chr4_1:41772810-41772829 Msa0548070:CDS 25.0%
! TGTTTCCAATGATGATATTA+AGG + chr4_1:41772840-41772859 Msa0548070:CDS 25.0%
!!! ATAAGTTGATTATCCAAACA+GGG - chr4_1:41772986-41773005 None:intergenic 25.0%
! GAAAACATCATATAGCTTAT+AGG - chr4_1:41773091-41773110 None:intergenic 25.0%
!! TTTTACATAAAAAGTCGGTT+TGG - chr4_1:41773222-41773241 None:intergenic 25.0%
!!! AAACCGACTTTTTATGTAAA+AGG + chr4_1:41773221-41773240 Msa0548070:intron 25.0%
! TTAAATCATACTGAAGAAGA+GGG - chr4_1:41773313-41773332 None:intergenic 25.0%
! ATTAAATCATACTGAAGAAG+AGG - chr4_1:41773314-41773333 None:intergenic 25.0%
!! TAGTATCTGGAAATTTGTTT+GGG + chr4_1:41773354-41773373 Msa0548070:intron 25.0%
!!! TAAATGTTGATTTAAAGCCA+GGG - chr4_1:41773697-41773716 None:intergenic 25.0%
!!! ATAAATGTTGATTTAAAGCC+AGG - chr4_1:41773698-41773717 None:intergenic 25.0%
! TAGCTTATATTCATGATTAC+TGG + chr4_1:41773812-41773831 Msa0548070:intron 25.0%
! CAAAATTACAATCTAATAGG+TGG - chr4_1:41774564-41774583 None:intergenic 25.0%
!!! ATTTTAATGGAATTCCTCAA+AGG + chr4_1:41775048-41775067 Msa0548070:CDS 25.0%
! GTATTAAGAACAAAGAAACA+TGG - chr4_1:41775502-41775521 None:intergenic 25.0%
!! TTAATACTGTGTTCCATTTT+TGG + chr4_1:41775515-41775534 Msa0548070:intron 25.0%
!! CTTTTACATCTATGGTTATT+AGG + chr4_1:41775935-41775954 Msa0548070:three_prime_UTR 25.0%
!! TCTAAAATATTCGTATTCCT+TGG + chr4_1:41776072-41776091 Msa0548070:three_prime_UTR 25.0%
! CTAAAATATTCGTATTCCTT+GGG + chr4_1:41776073-41776092 Msa0548070:three_prime_UTR 25.0%
! TCAATGCACAGAAAAATATT+TGG + chr4_1:41776230-41776249 Msa0548070:three_prime_UTR 25.0%
! GTAACAGTTTAATCATAACA+AGG - chr4_1:41776295-41776314 None:intergenic 25.0%
! TTATGATTAAACTGTTACAG+TGG + chr4_1:41776297-41776316 Msa0548070:three_prime_UTR 25.0%
!!! TTATCTTGTTATTTCTATGC+TGG + chr4_1:41776384-41776403 Msa0548070:three_prime_UTR 25.0%
!!! AGATGTTCATACTTGTTATA+GGG + chr4_1:41776446-41776465 Msa0548070:three_prime_UTR 25.0%
! GCATATATAATTTAGCAAGA+TGG + chr4_1:41776498-41776517 Msa0548070:three_prime_UTR 25.0%
! GATTTGAAAACCCTAAGTTT+TGG + chr4_1:41772653-41772672 Msa0548070:intron 30.0%
CAAATCCAAACCAAAACTTA+GGG - chr4_1:41772666-41772685 None:intergenic 30.0%
TCAAATCCAAACCAAAACTT+AGG - chr4_1:41772667-41772686 None:intergenic 30.0%
!!! TTTGTTTTGATTTTAGGCTC+CGG + chr4_1:41772687-41772706 Msa0548070:intron 30.0%
!! GATTCAGAGATCCATTTTTA+TGG + chr4_1:41772960-41772979 Msa0548070:intron 30.0%
!! GATAAGTTGATTATCCAAAC+AGG - chr4_1:41772987-41773006 None:intergenic 30.0%
! GATGTTTTCAAAAGCAATCT+TGG + chr4_1:41773102-41773121 Msa0548070:intron 30.0%
! GTAGTATCTGGAAATTTGTT+TGG + chr4_1:41773353-41773372 Msa0548070:intron 30.0%
!!! GATTTTGGTTTTTGAGTTGA+AGG + chr4_1:41773425-41773444 Msa0548070:intron 30.0%
!!! TGAAGGTTGGGTTTTAAATT+AGG + chr4_1:41773442-41773461 Msa0548070:intron 30.0%
!!! GCACAATTTTTTTCAACCAT+TGG + chr4_1:41773504-41773523 Msa0548070:intron 30.0%
!! TAAAGGCTAGTTTAGTTCTA+TGG - chr4_1:41773612-41773631 None:intergenic 30.0%
!! AAATGTTGATTTAAAGCCAG+GGG - chr4_1:41773696-41773715 None:intergenic 30.0%
!! ATGATTACTGGCTTCTATTA+GGG + chr4_1:41773824-41773843 Msa0548070:intron 30.0%
!!! TTGGATTAGCTTTTAACACA+CGG - chr4_1:41774002-41774021 None:intergenic 30.0%
TGTTAAAAGCTAATCCAAAC+AGG + chr4_1:41774004-41774023 Msa0548070:intron 30.0%
GTTAAAAGCTAATCCAAACA+GGG + chr4_1:41774005-41774024 Msa0548070:intron 30.0%
TAATGTATTAGTGTGCTTCA+CGG + chr4_1:41774043-41774062 Msa0548070:intron 30.0%
ACTAATCTATGATGCTAAAC+GGG - chr4_1:41774345-41774364 None:intergenic 30.0%
CACTAATCTATGATGCTAAA+CGG - chr4_1:41774346-41774365 None:intergenic 30.0%
AGATTAGTGACCAAGTTATA+TGG + chr4_1:41774357-41774376 Msa0548070:intron 30.0%
TAAACCTAAGCCATATAACT+TGG - chr4_1:41774370-41774389 None:intergenic 30.0%
ACATCTTGAATGCACTATAA+AGG + chr4_1:41774418-41774437 Msa0548070:intron 30.0%
!!! GCATATTGAGTTTTAGTTCT+GGG - chr4_1:41774512-41774531 None:intergenic 30.0%
!!! AGCATATTGAGTTTTAGTTC+TGG - chr4_1:41774513-41774532 None:intergenic 30.0%
TACAACAATGTTCAACTAGA+TGG + chr4_1:41774945-41774964 Msa0548070:CDS 30.0%
ACAACAATGTTCAACTAGAT+GGG + chr4_1:41774946-41774965 Msa0548070:CDS 30.0%
CTAATTATTGGATGCTCAAA+TGG + chr4_1:41775156-41775175 Msa0548070:intron 30.0%
ATTGAAAATTCCTCGTAACA+AGG - chr4_1:41775293-41775312 None:intergenic 30.0%
! TTTCCCATTCTTTGACTTAT+TGG + chr4_1:41775330-41775349 Msa0548070:intron 30.0%
! ACTGTTCTTTTCATCCTTAT+TGG + chr4_1:41775361-41775380 Msa0548070:intron 30.0%
TGCAGCAATTTACTGATATA+GGG - chr4_1:41775422-41775441 None:intergenic 30.0%
TTGCAGCAATTTACTGATAT+AGG - chr4_1:41775423-41775442 None:intergenic 30.0%
AAATTGCTGCAAACAAATTC+TGG + chr4_1:41775431-41775450 Msa0548070:intron 30.0%
TTCTAAATACCCTGTGTATA+TGG + chr4_1:41775465-41775484 Msa0548070:intron 30.0%
CAAAAAACGAGATCCAAAAA+TGG - chr4_1:41775531-41775550 None:intergenic 30.0%
TTCTTTGTTAACAGTATCAG+TGG - chr4_1:41775594-41775613 None:intergenic 30.0%
!! TCTTCTTGCTTTTACATCTA+TGG + chr4_1:41775927-41775946 Msa0548070:three_prime_UTR 30.0%
!! AACAAGTGGATTAATGAAGT+GGG + chr4_1:41776183-41776202 Msa0548070:three_prime_UTR 30.0%
AAATATTTGGCTGCAAAATG+TGG + chr4_1:41776243-41776262 Msa0548070:three_prime_UTR 30.0%
AATATTTGGCTGCAAAATGT+GGG + chr4_1:41776244-41776263 Msa0548070:three_prime_UTR 30.0%
TACAGTGGAATCTTCAAATA+AGG + chr4_1:41776312-41776331 Msa0548070:three_prime_UTR 30.0%
!!! ATATTACTGCTTTTGGGATA+GGG - chr4_1:41776363-41776382 None:intergenic 30.0%
!!! AATATTACTGCTTTTGGGAT+AGG - chr4_1:41776364-41776383 None:intergenic 30.0%
!! GAGATGTTCATACTTGTTAT+AGG + chr4_1:41776445-41776464 Msa0548070:three_prime_UTR 30.0%
!! GATGTTCATACTTGTTATAG+GGG + chr4_1:41776447-41776466 Msa0548070:three_prime_UTR 30.0%
! TCATCTAGTTTCTCTATGTT+GGG + chr4_1:41776666-41776685 Msa0548070:three_prime_UTR 30.0%
!!! ATTGAAGTGCTTGTTTTACT+TGG + chr4_1:41776810-41776829 Msa0548070:three_prime_UTR 30.0%
GAAGGATCGTGAAAAAGTTA+GGG - chr4_1:41772370-41772389 None:intergenic 35.0%
AGAAGGATCGTGAAAAAGTT+AGG - chr4_1:41772371-41772390 None:intergenic 35.0%
AATTTGAGAGTTCAACGAGA+TGG - chr4_1:41772407-41772426 None:intergenic 35.0%
AACAACAAAAAATCCGGATC+CGG + chr4_1:41772476-41772495 Msa0548070:CDS 35.0%
AAGCAAGTTAGTTACCTTAG+CGG - chr4_1:41772603-41772622 None:intergenic 35.0%
!!! GAAAACCCTAAGTTTTGGTT+TGG + chr4_1:41772658-41772677 Msa0548070:intron 35.0%
TTGGTTCCAGTTTCAATAGA+AGG - chr4_1:41772793-41772812 None:intergenic 35.0%
!! CATAAAAAGTCGGTTTGGAT+TGG - chr4_1:41773217-41773236 None:intergenic 35.0%
!!! TTGGTTTTTGAGTTGAAGGT+TGG + chr4_1:41773429-41773448 Msa0548070:intron 35.0%
!!! TGGTTTTTGAGTTGAAGGTT+GGG + chr4_1:41773430-41773449 Msa0548070:intron 35.0%
TTTCTTATGCACTCAAGATG+TGG + chr4_1:41773670-41773689 Msa0548070:intron 35.0%
!! CATGATTACTGGCTTCTATT+AGG + chr4_1:41773823-41773842 Msa0548070:intron 35.0%
!!! TGGATTAGCTTTTAACACAC+GGG - chr4_1:41774001-41774020 None:intergenic 35.0%
TTCTTTGTATAAGCCCTGTT+TGG - chr4_1:41774021-41774040 None:intergenic 35.0%
CTCTTACATTGCAGCATTAT+CGG + chr4_1:41774085-41774104 Msa0548070:intron 35.0%
TCTTACATTGCAGCATTATC+GGG + chr4_1:41774086-41774105 Msa0548070:intron 35.0%
! TATCGGGGTTTAAAATCTTG+AGG + chr4_1:41774102-41774121 Msa0548070:intron 35.0%
CTAATCTATGATGCTAAACG+GGG - chr4_1:41774344-41774363 None:intergenic 35.0%
ATAGTGCATTCAAGATGTGA+CGG - chr4_1:41774416-41774435 None:intergenic 35.0%
!!! CAGGAATTGTTTTCTGAAGT+TGG + chr4_1:41774729-41774748 Msa0548070:intron 35.0%
CCAACAATCTCTATCTTCAT+TGG - chr4_1:41774975-41774994 None:intergenic 35.0%
CCAATGAAGATAGAGATTGT+TGG + chr4_1:41774972-41774991 Msa0548070:CDS 35.0%
! GCAGCCATTGGAAATTTTAA+TGG + chr4_1:41775035-41775054 Msa0548070:CDS 35.0%
!! AATTCCTCAAAGGTATTCAG+TGG + chr4_1:41775058-41775077 Msa0548070:intron 35.0%
ATTCTACATGCTTCCTGTAT+TGG + chr4_1:41775132-41775151 Msa0548070:intron 35.0%
TTCTACATGCTTCCTGTATT+GGG + chr4_1:41775133-41775152 Msa0548070:intron 35.0%
TCCTGTATTGGGCTAATTAT+TGG + chr4_1:41775144-41775163 Msa0548070:intron 35.0%
TCCAATAATTAGCCCAATAC+AGG - chr4_1:41775148-41775167 None:intergenic 35.0%
! GATGCTCAAATGGTGATTTT+GGG + chr4_1:41775166-41775185 Msa0548070:intron 35.0%
GTTAATCAAGTATAGCAGCA+AGG - chr4_1:41775223-41775242 None:intergenic 35.0%
!! TATTTGTTGTCCTTGTTACG+AGG + chr4_1:41775280-41775299 Msa0548070:intron 35.0%
CGTCCAATAAGTCAAAGAAT+GGG - chr4_1:41775336-41775355 None:intergenic 35.0%
TCGTCCAATAAGTCAAAGAA+TGG - chr4_1:41775337-41775356 None:intergenic 35.0%
AACAGTTGAGACTTCCAATA+AGG - chr4_1:41775378-41775397 None:intergenic 35.0%
ACTCCTTCAGTTTATTTGCA+TGG - chr4_1:41775891-41775910 None:intergenic 35.0%
!! TATTTGGAGCCCTATGTTTT+AGG + chr4_1:41775992-41776011 Msa0548070:three_prime_UTR 35.0%
!! ATTTGGAGCCCTATGTTTTA+GGG + chr4_1:41775993-41776012 Msa0548070:three_prime_UTR 35.0%
TTTCCCTTCCCTAAAACATA+GGG - chr4_1:41776004-41776023 None:intergenic 35.0%
! TTTTCCCTTCCCTAAAACAT+AGG - chr4_1:41776005-41776024 None:intergenic 35.0%
! GTGAAAACTGTTGCTTGATA+TGG + chr4_1:41776032-41776051 Msa0548070:three_prime_UTR 35.0%
! TGTTGCTTGATATGGAGTTT+GGG + chr4_1:41776040-41776059 Msa0548070:three_prime_UTR 35.0%
TCAAAGTTCATACATTCCCA+AGG - chr4_1:41776092-41776111 None:intergenic 35.0%
!! CAACAAGTGGATTAATGAAG+TGG + chr4_1:41776182-41776201 Msa0548070:three_prime_UTR 35.0%
GTTTAATCATAACAAGGCAG+TGG - chr4_1:41776289-41776308 None:intergenic 35.0%
GTGGAATCTTCAAATAAGGT+AGG + chr4_1:41776316-41776335 Msa0548070:three_prime_UTR 35.0%
! TCTTTCCTGACTGGTAATTT+TGG + chr4_1:41776476-41776495 Msa0548070:three_prime_UTR 35.0%
ATATGCCAAAATTACCAGTC+AGG - chr4_1:41776484-41776503 None:intergenic 35.0%
AATTCCAAATGGTCTACCAT+TGG + chr4_1:41776611-41776630 Msa0548070:three_prime_UTR 35.0%
! CTCATCTAGTTTCTCTATGT+TGG + chr4_1:41776665-41776684 Msa0548070:three_prime_UTR 35.0%
TTAACTGAACTTCTCAACTG+TGG + chr4_1:41776719-41776738 Msa0548070:three_prime_UTR 35.0%
ACACACCCCATACAATATAA+AGG - chr4_1:41776788-41776807 None:intergenic 35.0%
GTGTGGCTGTTAAAATTTAC+AGG + chr4_1:41776843-41776862 Msa0548070:three_prime_UTR 35.0%
CTGTTAAAATTTACAGGCGT+CGG + chr4_1:41776849-41776868 Msa0548070:three_prime_UTR 35.0%
TGTATCCTTTCCCACAAATA+GGG - chr4_1:41776884-41776903 None:intergenic 35.0%
TGAGAGAGAAGAAGAGAAGA+AGG - chr4_1:41772323-41772342 None:intergenic 40.0%
AAAAGTTAGGGTTTCGTCGA+GGG - chr4_1:41772358-41772377 None:intergenic 40.0%
AAAAAGTTAGGGTTTCGTCG+AGG - chr4_1:41772359-41772378 None:intergenic 40.0%
!! TCCATTTTTATGGCCCTGTT+TGG + chr4_1:41772970-41772989 Msa0548070:intron 40.0%
TCCAAACAGGGCCATAAAAA+TGG - chr4_1:41772974-41772993 None:intergenic 40.0%
GTCATGAGTGAAGTAGTATC+TGG + chr4_1:41773341-41773360 Msa0548070:intron 40.0%
TTGGATCAAGTTAGATGTGG+CGG - chr4_1:41773541-41773560 None:intergenic 40.0%
CCATTGGATCAAGTTAGATG+TGG - chr4_1:41773544-41773563 None:intergenic 40.0%
CCACATCTAACTTGATCCAA+TGG + chr4_1:41773541-41773560 Msa0548070:intron 40.0%
CATCTAACTTGATCCAATGG+TGG + chr4_1:41773544-41773563 Msa0548070:intron 40.0%
AGCATGTTTGTTTCCACCAT+TGG - chr4_1:41773560-41773579 None:intergenic 40.0%
GGTGGAAACAAACATGCTTA+TGG + chr4_1:41773562-41773581 Msa0548070:intron 40.0%
!! TACTGGCTTCTATTAGGGTT+TGG + chr4_1:41773829-41773848 Msa0548070:intron 40.0%
! ACTGGCTTCTATTAGGGTTT+GGG + chr4_1:41773830-41773849 Msa0548070:intron 40.0%
CTTACATTGCAGCATTATCG+GGG + chr4_1:41774087-41774106 Msa0548070:intron 40.0%
! GAACTTCTTTTGTAAGGACC+TGG - chr4_1:41774134-41774153 None:intergenic 40.0%
CTCGCAAGCATCTTATGAAT+TGG - chr4_1:41774272-41774291 None:intergenic 40.0%
GTGACCAAGTTATATGGCTT+AGG + chr4_1:41774363-41774382 Msa0548070:intron 40.0%
!! GCACTATAAAGGCACTCTTA+AGG + chr4_1:41774429-41774448 Msa0548070:intron 40.0%
!! TTTAGTTCTGGGTAGAAGGA+AGG - chr4_1:41774501-41774520 None:intergenic 40.0%
!!! GAGTTTTAGTTCTGGGTAGA+AGG - chr4_1:41774505-41774524 None:intergenic 40.0%
!! CTGAAGTTGGTGACTTGAAA+CGG + chr4_1:41774742-41774761 Msa0548070:CDS 40.0%
! CTTGTCCAGTTGGCTTAATT+TGG + chr4_1:41774805-41774824 Msa0548070:intron 40.0%
AACGACCAAATTAAGCCAAC+TGG - chr4_1:41774813-41774832 None:intergenic 40.0%
! GGATGCTCAAATGGTGATTT+TGG + chr4_1:41775165-41775184 Msa0548070:intron 40.0%
TGATATAGGGTCACAACAAG+GGG - chr4_1:41775409-41775428 None:intergenic 40.0%
CTGATATAGGGTCACAACAA+GGG - chr4_1:41775410-41775429 None:intergenic 40.0%
ACTGATATAGGGTCACAACA+AGG - chr4_1:41775411-41775430 None:intergenic 40.0%
TACTTATCTGTCTTGAGCAG+TGG + chr4_1:41775677-41775696 Msa0548070:intron 40.0%
ACTTATCTGTCTTGAGCAGT+GGG + chr4_1:41775678-41775697 Msa0548070:intron 40.0%
AGGCCATGCAAATAAACTGA+AGG + chr4_1:41775885-41775904 Msa0548070:CDS 40.0%
TTATTAGGTGCGCATTGTGA+TGG + chr4_1:41775950-41775969 Msa0548070:three_prime_UTR 40.0%
! CTGTTGCTTGATATGGAGTT+TGG + chr4_1:41776039-41776058 Msa0548070:three_prime_UTR 40.0%
TTGTAATGTGCATGCACTCT+AGG + chr4_1:41776128-41776147 Msa0548070:three_prime_UTR 40.0%
!! AAGTGGATTAATGAAGTGGG+AGG + chr4_1:41776186-41776205 Msa0548070:three_prime_UTR 40.0%
AACTCCAATGGTAGACCATT+TGG - chr4_1:41776618-41776637 None:intergenic 40.0%
TGTCACAGTGTTAACTCCAA+TGG - chr4_1:41776630-41776649 None:intergenic 40.0%
ATGTTGGGATTCGAAATGCA+CGG + chr4_1:41776681-41776700 Msa0548070:three_prime_UTR 40.0%
TGAACTTCTCAACTGTGGTT+GGG + chr4_1:41776724-41776743 Msa0548070:three_prime_UTR 40.0%
TACTTGGTTAGAACGTAGTG+TGG + chr4_1:41776826-41776845 Msa0548070:three_prime_UTR 40.0%
GTATATGCCTCCCTATTTGT+GGG + chr4_1:41776871-41776890 Msa0548070:three_prime_UTR 40.0%
GTGTATCCTTTCCCACAAAT+AGG - chr4_1:41776885-41776904 None:intergenic 40.0%
AAAGTTAGGGTTTCGTCGAG+GGG - chr4_1:41772357-41772376 None:intergenic 45.0%
ATGGAGGAAGAGGAAGAAGA+AGG - chr4_1:41772388-41772407 None:intergenic 45.0%
TTGAGAGTTCAACGAGATGG+AGG - chr4_1:41772404-41772423 None:intergenic 45.0%
!! GTTCTTGATGATGTCGTCGA+GGG - chr4_1:41772459-41772478 None:intergenic 45.0%
!! TGTTCTTGATGATGTCGTCG+AGG - chr4_1:41772460-41772479 None:intergenic 45.0%
CAAGTTAGTTACCTTAGCGG+CGG - chr4_1:41772600-41772619 None:intergenic 45.0%
CGTGCTCCTTCTATTGAAAC+TGG + chr4_1:41772784-41772803 Msa0548070:CDS 45.0%
GCAATATGAGACAGCAAGAC+AGG - chr4_1:41773382-41773401 None:intergenic 45.0%
! ATATTGCGTGAGAGTATGCG+AGG + chr4_1:41773395-41773414 Msa0548070:intron 45.0%
GGCGGGACTTATTAATCCAA+TGG - chr4_1:41773523-41773542 None:intergenic 45.0%
TGGATCAAGTTAGATGTGGC+GGG - chr4_1:41773540-41773559 None:intergenic 45.0%
AGTTCTATGGTGCGCAAATG+AGG - chr4_1:41773599-41773618 None:intergenic 45.0%
! AAAATCTTGAGGTGCTAGCC+AGG + chr4_1:41774113-41774132 Msa0548070:intron 45.0%
AGGCAGAACAGTGTAGTTGA+AGG - chr4_1:41774481-41774500 None:intergenic 45.0%
!! TCGAAGGTATCTTGTCCAGT+TGG + chr4_1:41774795-41774814 Msa0548070:intron 45.0%
GGAACCAACATATCTACACC+TGG + chr4_1:41774993-41775012 Msa0548070:CDS 45.0%
TGCACCAGGTGTAGATATGT+TGG - chr4_1:41775000-41775019 None:intergenic 45.0%
CCAATGGCTGCATTTACAAC+AGG - chr4_1:41775026-41775045 None:intergenic 45.0%
CCTGTTGTAAATGCAGCCAT+TGG + chr4_1:41775023-41775042 Msa0548070:CDS 45.0%
CAAGCCACTGAATACCTTTG+AGG - chr4_1:41775065-41775084 None:intergenic 45.0%
TGCAAACAAATTCTGGTCGC+TGG + chr4_1:41775438-41775457 Msa0548070:intron 45.0%
CACTCGCATCCATATACACA+GGG - chr4_1:41775477-41775496 None:intergenic 45.0%
ACACTCGCATCCATATACAC+AGG - chr4_1:41775478-41775497 None:intergenic 45.0%
GCAGAGTTGGAGAATTTCGA+GGG + chr4_1:41775705-41775724 Msa0548070:CDS 45.0%
! CAAGGCATTCGAAGAAATCG+AGG + chr4_1:41775743-41775762 Msa0548070:CDS 45.0%
ATTCGAAGAAATCGAGGACG+TGG + chr4_1:41775749-41775768 Msa0548070:CDS 45.0%
AGAAGATCTTGATGCTGAGC+TGG + chr4_1:41775847-41775866 Msa0548070:CDS 45.0%
!! TGAGCTGGAGAAGTATCATG+CGG + chr4_1:41775862-41775881 Msa0548070:CDS 45.0%
!!! GAGCCCTATGTTTTAGGGAA+GGG + chr4_1:41775998-41776017 Msa0548070:three_prime_UTR 45.0%
TGGATTAATGAAGTGGGAGG+TGG + chr4_1:41776189-41776208 Msa0548070:three_prime_UTR 45.0%
GGATTAATGAAGTGGGAGGT+GGG + chr4_1:41776190-41776209 Msa0548070:three_prime_UTR 45.0%
! TGCATTGATAGATGAGAGCG+TGG - chr4_1:41776218-41776237 None:intergenic 45.0%
!!! TTTTGGGATAGGGTTGTGGT+AGG - chr4_1:41776353-41776372 None:intergenic 45.0%
! GATTGTGCTGGTCAAGATTC+AGG + chr4_1:41776556-41776575 Msa0548070:three_prime_UTR 45.0%
!! GCAGGGAATGCTATTTCTGT+TGG - chr4_1:41776586-41776605 None:intergenic 45.0%
CAGAAATAGCATTCCCTGCT+CGG + chr4_1:41776587-41776606 Msa0548070:three_prime_UTR 45.0%
AGAAATAGCATTCCCTGCTC+GGG + chr4_1:41776588-41776607 Msa0548070:three_prime_UTR 45.0%
CTGAACTTCTCAACTGTGGT+TGG + chr4_1:41776723-41776742 Msa0548070:three_prime_UTR 45.0%
GAACTTCTCAACTGTGGTTG+GGG + chr4_1:41776725-41776744 Msa0548070:three_prime_UTR 45.0%
GGTATATGCCTCCCTATTTG+TGG + chr4_1:41776870-41776889 Msa0548070:three_prime_UTR 45.0%
ATCCTTTCCCACAAATAGGG+AGG - chr4_1:41776881-41776900 None:intergenic 45.0%
!! ATATATATAATCTTATAATA+AGG + chr4_1:41776411-41776430 Msa0548070:three_prime_UTR 5.0%
GTTCAACGAGATGGAGGAAG+AGG - chr4_1:41772398-41772417 None:intergenic 50.0%
! CATATCGAGTGCTGCAGACA+TGG - chr4_1:41772435-41772454 None:intergenic 50.0%
AGCGATTAACGGCACGGTTA+GGG - chr4_1:41772565-41772584 None:intergenic 50.0%
TGCAGATCAGCATGTAGCTG+CGG + chr4_1:41772735-41772754 Msa0548070:CDS 50.0%
! TGAGAGTATGCGAGGAGAGT+GGG + chr4_1:41773403-41773422 Msa0548070:intron 50.0%
! ATGCGAGGAGAGTGGGATTT+TGG + chr4_1:41773410-41773429 Msa0548070:intron 50.0%
CTATGGTGCGCAAATGAGGT+AGG - chr4_1:41773595-41773614 None:intergenic 50.0%
TGTAGTTGAAGGCCTGCCTA+AGG - chr4_1:41774470-41774489 None:intergenic 50.0%
!! GTTGGTGACTTGAAACGGCA+CGG + chr4_1:41774747-41774766 Msa0548070:CDS 50.0%
GGCGTTCATTATGACAGGAG+TGG + chr4_1:41774768-41774787 Msa0548070:CDS 50.0%
CCGTGAGAAGACTACTTCTG+CGG - chr4_1:41774895-41774914 None:intergenic 50.0%
CCGCAGAAGTAGTCTTCTCA+CGG + chr4_1:41774892-41774911 Msa0548070:CDS 50.0%
TTTACAACAGGAGCTGCACC+AGG - chr4_1:41775014-41775033 None:intergenic 50.0%
GGCAGAGTTGGAGAATTTCG+AGG + chr4_1:41775704-41775723 Msa0548070:CDS 50.0%
AGTTGGAGAATTTCGAGGGC+TGG + chr4_1:41775709-41775728 Msa0548070:CDS 50.0%
GTTGGAGAATTTCGAGGGCT+GGG + chr4_1:41775710-41775729 Msa0548070:CDS 50.0%
AGAAATCGAGGACGTGGAAG+AGG + chr4_1:41775755-41775774 Msa0548070:CDS 50.0%
!!! GGAGCCCTATGTTTTAGGGA+AGG + chr4_1:41775997-41776016 Msa0548070:three_prime_UTR 50.0%
!!! CTGCTTTTGGGATAGGGTTG+TGG - chr4_1:41776357-41776376 None:intergenic 50.0%
! CATCTGTTCTGCTTGCTACG+CGG + chr4_1:41776528-41776547 Msa0548070:three_prime_UTR 50.0%
! CCATTTGGAATTCCCGAGCA+GGG - chr4_1:41776603-41776622 None:intergenic 50.0%
! ACCATTTGGAATTCCCGAGC+AGG - chr4_1:41776604-41776623 None:intergenic 50.0%
TGCCTCCCTATTTGTGGGAA+AGG + chr4_1:41776876-41776895 Msa0548070:three_prime_UTR 50.0%
!! TCCTCTAGGGTTACCGGATC+CGG - chr4_1:41772492-41772511 None:intergenic 55.0%
! GTCTAGAACGGCCTCCTCTA+GGG - chr4_1:41772505-41772524 None:intergenic 55.0%
ACGGTTAGGGATACGACGAG+CGG - chr4_1:41772552-41772571 None:intergenic 55.0%
GAGCGATTAACGGCACGGTT+AGG - chr4_1:41772566-41772585 None:intergenic 55.0%
GTAGGGTGCGGAGCGATTAA+CGG - chr4_1:41772576-41772595 None:intergenic 55.0%
GTTACCTTAGCGGCGGAGTA+GGG - chr4_1:41772593-41772612 None:intergenic 55.0%
AGTTACCTTAGCGGCGGAGT+AGG - chr4_1:41772594-41772613 None:intergenic 55.0%
TTTAGGCTCCGGAGACGACA+TGG + chr4_1:41772698-41772717 Msa0548070:intron 55.0%
TCATGCTGCCATGTCGTCTC+CGG - chr4_1:41772709-41772728 None:intergenic 55.0%
AGATCAGCATGTAGCTGCGG+CGG + chr4_1:41772738-41772757 Msa0548070:CDS 55.0%
! GTGAGAGTATGCGAGGAGAG+TGG + chr4_1:41773402-41773421 Msa0548070:intron 55.0%
GGCACGGCGTTCATTATGAC+AGG + chr4_1:41774763-41774782 Msa0548070:CDS 55.0%
TGACAGGAGTGGCAGATCGA+AGG + chr4_1:41774779-41774798 Msa0548070:CDS 55.0%
TCTGTCTTGAGCAGTGGGCA+AGG + chr4_1:41775683-41775702 Msa0548070:intron 55.0%
CTGCAGATACCTTCTCGTCG+CGG - chr4_1:41775829-41775848 None:intergenic 55.0%
!! GCTGGAGAAGTATCATGCGG+AGG + chr4_1:41775865-41775884 Msa0548070:CDS 55.0%
TAGGGTTGTGGTAGGAGTGG+CGG - chr4_1:41776345-41776364 None:intergenic 55.0%
GGATAGGGTTGTGGTAGGAG+TGG - chr4_1:41776348-41776367 None:intergenic 55.0%
! GGGAGTACGTCTTTCCTGAC+TGG + chr4_1:41776467-41776486 Msa0548070:three_prime_UTR 55.0%
TACGCGGACTCTGATTGTGC+TGG + chr4_1:41776544-41776563 Msa0548070:three_prime_UTR 55.0%
CCCTGCTCGGGAATTCCAAA+TGG + chr4_1:41776600-41776619 Msa0548070:three_prime_UTR 55.0%
TCCGGATCCGGTAACCCTAG+AGG + chr4_1:41772488-41772507 Msa0548070:CDS 60.0%
GGATCCGGTAACCCTAGAGG+AGG + chr4_1:41772491-41772510 Msa0548070:CDS 60.0%
!! ACGGCCTCCTCTAGGGTTAC+CGG - chr4_1:41772498-41772517 None:intergenic 60.0%
! GGTCTAGAACGGCCTCCTCT+AGG - chr4_1:41772506-41772525 None:intergenic 60.0%
AAGCGGGTGCGGGTCTAGAA+CGG - chr4_1:41772517-41772536 None:intergenic 60.0%
CGGTTAGGGATACGACGAGC+GGG - chr4_1:41772551-41772570 None:intergenic 60.0%
GTGCGGAGCGATTAACGGCA+CGG - chr4_1:41772571-41772590 None:intergenic 60.0%
GCGTATCCAGCAGCTCAAGG+TGG + chr4_1:41772760-41772779 Msa0548070:CDS 60.0%
TGCACTCAAGATGTGGCCCC+TGG + chr4_1:41773677-41773696 Msa0548070:intron 60.0%
GCACCTAGCCTGTGTGCCTT+AGG + chr4_1:41774451-41774470 Msa0548070:intron 60.0%
CTGCCTAAGGCACACAGGCT+AGG - chr4_1:41774457-41774476 None:intergenic 60.0%
CTAGCCTGTGTGCCTTAGGC+AGG + chr4_1:41774455-41774474 Msa0548070:intron 60.0%
AAGGCCTGCCTAAGGCACAC+AGG - chr4_1:41774462-41774481 None:intergenic 60.0%
AGCAGTGGGCAAGGCAGAGT+TGG + chr4_1:41775692-41775711 Msa0548070:intron 60.0%
GGAGAATTTCGAGGGCTGGG+AGG + chr4_1:41775713-41775732 Msa0548070:CDS 60.0%
TTTCGAGGGCTGGGAGGAAG+AGG + chr4_1:41775719-41775738 Msa0548070:CDS 60.0%
CGAGGACGTGGAAGAGGTAG+CGG + chr4_1:41775761-41775780 Msa0548070:CDS 60.0%
AGGGTTGTGGTAGGAGTGGC+GGG - chr4_1:41776344-41776363 None:intergenic 60.0%
TCTAGACCCGCACCCGCTTC+CGG + chr4_1:41772518-41772537 Msa0548070:CDS 65.0%
CTTAGCGGCGGAGTAGGGTG+CGG - chr4_1:41772588-41772607 None:intergenic 65.0%
GCGGCGTATCCAGCAGCTCA+AGG + chr4_1:41772757-41772776 Msa0548070:CDS 65.0%
GCACGACCACCTTGAGCTGC+TGG - chr4_1:41772769-41772788 None:intergenic 65.0%
GGGCTGGGAGGAAGAGGTCA+AGG + chr4_1:41775725-41775744 Msa0548070:CDS 65.0%
! GGACGTGGAAGAGGTAGCGG+TGG + chr4_1:41775764-41775783 Msa0548070:CDS 65.0%
TGGTAGAGGCCGCGACGAGA+AGG + chr4_1:41775817-41775836 Msa0548070:CDS 65.0%
TCCAGGTCCGGAAGCGGGTG+CGG - chr4_1:41772528-41772547 None:intergenic 70.0%
AGCGGGTCCAGGTCCGGAAG+CGG - chr4_1:41772534-41772553 None:intergenic 70.0%
ACGACGAGCGGGTCCAGGTC+CGG - chr4_1:41772540-41772559 None:intergenic 70.0%
GGGATACGACGAGCGGGTCC+AGG - chr4_1:41772545-41772564 None:intergenic 70.0%
CGCACCCTACTCCGCCGCTA+AGG + chr4_1:41772586-41772605 Msa0548070:CDS 70.0%
! AGAGGTAGCGGTGGACCCCG+TGG + chr4_1:41775773-41775792 Msa0548070:CDS 70.0%
TCCACCGCGACCACCACCAC+GGG - chr4_1:41775792-41775811 None:intergenic 70.0%
CTCCACCGCGACCACCACCA+CGG - chr4_1:41775793-41775812 None:intergenic 70.0%
CGCGGTGGAGGTCGTGGTAG+AGG + chr4_1:41775803-41775822 Msa0548070:CDS 70.0%
CCAGGTCCGGAAGCGGGTGC+GGG - chr4_1:41772527-41772546 None:intergenic 75.0%
GCGGGTCCAGGTCCGGAAGC+GGG - chr4_1:41772533-41772552 None:intergenic 75.0%
! GGTAGCGGTGGACCCCGTGG+TGG + chr4_1:41775776-41775795 Msa0548070:CDS 75.0%
AGCGGTGGACCCCGTGGTGG+TGG + chr4_1:41775779-41775798 Msa0548070:CDS 75.0%
!! GGACCCCGTGGTGGTGGTCG+CGG + chr4_1:41775785-41775804 Msa0548070:CDS 75.0%
CCACCGCGACCACCACCACG+GGG - chr4_1:41775791-41775810 None:intergenic 75.0%
!! CGTGGTGGTGGTCGCGGTGG+AGG + chr4_1:41775791-41775810 Msa0548070:CDS 75.0%
GGTGGTCGCGGTGGAGGTCG+TGG + chr4_1:41775797-41775816 Msa0548070:CDS 75.0%
! CCCGCACCCGCTTCCGGACC+TGG + chr4_1:41772524-41772543 Msa0548070:CDS 80.0%
!!! CCCCGTGGTGGTGGTCGCGG+TGG + chr4_1:41775788-41775807 Msa0548070:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 41772305 41776932 41772305 ID=Msa0548070;Name=Msa0548070
chr4_1 mRNA 41772305 41776932 41772305 ID=Msa0548070-mRNA-1;Parent=Msa0548070;Name=Msa0548070-mRNA-1;_AED=0.03;_eAED=0.03;_QI=129|1|1|1|1|1|5|1028|263
chr4_1 exon 41772305 41772607 41772305 ID=Msa0548070-mRNA-1:exon:10705;Parent=Msa0548070-mRNA-1
chr4_1 exon 41772703 41772861 41772703 ID=Msa0548070-mRNA-1:exon:10706;Parent=Msa0548070-mRNA-1
chr4_1 exon 41774732 41774800 41774732 ID=Msa0548070-mRNA-1:exon:10707;Parent=Msa0548070-mRNA-1
chr4_1 exon 41774888 41775069 41774888 ID=Msa0548070-mRNA-1:exon:10708;Parent=Msa0548070-mRNA-1
chr4_1 exon 41775697 41776932 41775697 ID=Msa0548070-mRNA-1:exon:10709;Parent=Msa0548070-mRNA-1
chr4_1 five_prime_UTR 41772305 41772433 41772305 ID=Msa0548070-mRNA-1:five_prime_utr;Parent=Msa0548070-mRNA-1
chr4_1 CDS 41772434 41772607 41772434 ID=Msa0548070-mRNA-1:cds;Parent=Msa0548070-mRNA-1
chr4_1 CDS 41772703 41772861 41772703 ID=Msa0548070-mRNA-1:cds;Parent=Msa0548070-mRNA-1
chr4_1 CDS 41774732 41774800 41774732 ID=Msa0548070-mRNA-1:cds;Parent=Msa0548070-mRNA-1
chr4_1 CDS 41774888 41775069 41774888 ID=Msa0548070-mRNA-1:cds;Parent=Msa0548070-mRNA-1
chr4_1 CDS 41775697 41775904 41775697 ID=Msa0548070-mRNA-1:cds;Parent=Msa0548070-mRNA-1
chr4_1 three_prime_UTR 41775905 41776932 41775905 ID=Msa0548070-mRNA-1:three_prime_utr;Parent=Msa0548070-mRNA-1
Gene Sequence

>Msa0548070

ATGTCTGCAGCACTCGATATGACCCTCGACGACATCATCAAGAACAACAAAAAATCCGGATCCGGTAACCCTAGAGGAGGCCGTTCTAGACCCGCACCCGCTTCCGGACCTGGACCCGCTCGTCGTATCCCTAACCGTGCCGTTAATCGCTCCGCACCCTACTCCGCCGCTAAGGCTCCGGAGACGACATGGCAGCATGATTTGTATGCAGATCAGCATGTAGCTGCGGCGGCGTATCCAGCAGCTCAAGGTGGTCGTGCTCCTTCTATTGAAACTGGAACCAAGCTCTATATTTCTAATTTGGATTACGGTGTTTCCAATGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACTTGAAACGGCACGGCGTTCATTATGACAGGAGTGGCAGATCGAAGGGTACCGCAGAAGTAGTCTTCTCACGGAGACAAGATGCTGTAGCTGCTGTGAAGAGATACAACAATGTTCAACTAGATGGGAAGCCAATGAAGATAGAGATTGTTGGAACCAACATATCTACACCTGGTGCAGCTCCTGTTGTAAATGCAGCCATTGGAAATTTTAATGGAATTCCTCAAAGTGGGCAAGGCAGAGTTGGAGAATTTCGAGGGCTGGGAGGAAGAGGTCAAGGCATTCGAAGAAATCGAGGACGTGGAAGAGGTAGCGGTGGACCCCGTGGTGGTGGTCGCGGTGGAGGTCGTGGTAGAGGCCGCGACGAGAAGGTATCTGCAGAAGATCTTGATGCTGAGCTGGAGAAGTATCATGCGGAGGCCATGCAAATAAACTGA
Protein sequence

>Msa0548070

MSAALDMTLDDIIKNNKKSGSGNPRGGRSRPAPASGPGPARRIPNRAVNRSAPYSAAKAPETTWQHDLYADQHVAAAAYPAAQGGRAPSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGAAPVVNAAIGNFNGIPQSGQGRVGEFRGLGGRGQGIRRNRGRGRGSGGPRGGGRGGGRGRGRDEKVSAEDLDAELEKYHAEAMQIN*