AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0660880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0660880 MtrunA17_Chr5g0404321 97.596 416 10 0 1 416 1 416 0.0 841
Msa0660880 MtrunA17_Chr8g0373001 74.519 416 102 2 1 416 1 412 0.0 649
Msa0660880 MtrunA17_Chr1g0155301 62.903 434 131 8 1 416 1 422 0.0 527
Msa0660880 MtrunA17_Chr8g0373361 58.111 413 151 9 1 409 11 405 1.97e-159 455
Msa0660880 MtrunA17_Chr2g0278511 55.069 434 170 12 1 416 1 427 1.07e-153 441
Msa0660880 MtrunA17_Chr2g0286441 57.182 369 151 3 48 416 32 393 1.57e-149 429
Msa0660880 MtrunA17_Chr1g0201891 53.182 440 173 12 1 416 1 431 6.26e-149 429
Msa0660880 MtrunA17_Chr1g0196071 52.871 418 179 7 1 416 1 402 3.18e-146 421
Msa0660880 MtrunA17_Chr8g0373331 51.090 413 129 9 1 407 1 346 8.66e-132 382
Msa0660880 MtrunA17_Chr2g0315641 50.829 362 146 2 55 416 42 371 2.35e-127 372
Msa0660880 MtrunA17_Chr2g0315651 44.772 373 167 6 48 416 30 367 4.20e-101 305
Msa0660880 MtrunA17_Chr8g0373351 45.663 392 95 11 37 413 3 291 9.75e-95 286
Msa0660880 MtrunA17_Chr1g0156151 51.982 227 101 2 1 223 1 223 3.32e-76 236
Msa0660880 MtrunA17_Chr8g0373341 53.333 225 59 6 1 207 1 197 1.16e-55 186
Msa0660880 MtrunA17_Chr8g0373341 55.556 117 51 1 291 406 204 320 4.43e-34 129
Msa0660880 MtrunA17_Chr3g0091401 71.134 97 22 1 98 194 9 99 2.84e-37 131
Msa0660880 MtrunA17_Chr2g0334041 36.697 109 54 4 313 415 260 359 1.55e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0660880 AT2G18280.2 63.876 418 124 7 1 416 1 393 0.0 518
Msa0660880 AT2G18280.1 63.876 418 124 7 1 416 1 393 0.0 518
Msa0660880 AT1G47270.3 58.333 396 131 9 32 416 16 388 9.58e-155 442
Msa0660880 AT1G47270.1 58.333 396 131 9 32 416 41 413 1.23e-154 443
Msa0660880 AT1G47270.2 58.333 396 131 9 32 416 40 412 1.40e-154 443
Msa0660880 AT1G25280.1 53.795 448 172 9 1 416 1 445 1.42e-153 442
Msa0660880 AT2G47900.3 53.589 418 181 5 1 416 1 407 6.76e-152 436
Msa0660880 AT2G47900.2 53.717 417 181 5 1 416 1 406 1.27e-151 436
Msa0660880 AT2G47900.1 53.717 417 181 5 1 416 1 406 1.27e-151 436
Msa0660880 AT1G76900.2 50.866 462 174 9 1 416 1 455 3.52e-145 421
Msa0660880 AT1G76900.1 50.866 462 174 9 1 416 1 455 3.52e-145 421
Msa0660880 AT1G76900.3 50.866 462 174 9 1 416 1 455 3.52e-145 421
Msa0660880 AT1G43640.1 50.000 442 182 12 1 416 1 429 1.51e-142 413
Msa0660880 AT5G18680.1 53.887 373 147 7 51 416 35 389 2.56e-130 380
Msa0660880 AT1G43640.2 52.151 372 147 9 67 416 1 363 1.84e-128 375
Msa0660880 AT3G06380.1 51.671 389 168 7 31 416 9 380 4.05e-128 375
Msa0660880 AT1G53320.1 51.934 362 148 3 55 416 44 379 1.60e-124 365
Msa0660880 AT5G18680.2 54.369 309 117 6 114 416 7 297 1.69e-105 314
Msa0660880 AT3G06380.2 54.153 301 119 6 118 416 5 288 2.10e-101 303
Msa0660880 AT1G25280.3 56.180 267 93 6 174 416 1 267 1.05e-94 285
Msa0660880 AT1G25280.2 56.180 267 93 6 174 416 1 267 1.05e-94 285
Msa0660880 AT1G61940.2 50.575 87 43 0 58 144 1 87 4.21e-26 106
Msa0660880 AT1G61940.1 54.098 61 28 0 58 118 1 61 6.01e-16 77.4

Find 145 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTGCTGGACCGGCTATT+TGG 0.209525 4_3:+71999674 None:intergenic
CCAATTGGATCTTTACCTTT+TGG 0.222216 4_3:+71999428 None:intergenic
TAACACGGCCCTTGAAATTT+AGG 0.254077 4_3:+71999291 None:intergenic
CTGCCTCTGTTTCTCCGATT+TGG 0.257203 4_3:-72002265 Msa0660880:five_prime_UTR
CCAGCAGGAGATTTCATTCT+AGG 0.267212 4_3:-71999661 Msa0660880:CDS
TGGAAAAGATATATTTACTA+TGG 0.274718 4_3:-71999165 Msa0660880:CDS
CACAGACTTCATCATATCTT+TGG 0.281729 4_3:-71999907 Msa0660880:CDS
TGTTGGTGGCGGACCCTCTT+CGG 0.290583 4_3:-72002353 Msa0660880:five_prime_UTR
CTAAAATTAAATTTAGTTGC+AGG 0.290792 4_3:+71998896 None:intergenic
ATCACCTGCTTTAACGAAAT+AGG 0.313540 4_3:+72001200 None:intergenic
TTGCAGCTGTTCATGCCATC+TGG 0.337933 4_3:+71999322 None:intergenic
ATCTTGCAGTTTGGAAAGAT+TGG 0.342353 4_3:-71999185 Msa0660880:CDS
CGTCAATCTTCCACACTCTT+CGG 0.347596 4_3:+72001226 None:intergenic
TTCAACCCTCGCAGAGTTGC+CGG 0.349688 4_3:-71999393 Msa0660880:CDS
GTCAATCTTCCACACTCTTC+GGG 0.352453 4_3:+72001227 None:intergenic
GAGAAGGTTATCTTGCAGTT+TGG 0.354935 4_3:-71999194 Msa0660880:CDS
TATACCTGTCTCAGCTGTTC+AGG 0.357164 4_3:-71999528 Msa0660880:CDS
GTTGGTGGCGGACCCTCTTC+GGG 0.370624 4_3:-72002352 Msa0660880:five_prime_UTR
TAGAAGAGACCGAGACTTCT+TGG 0.372683 4_3:-72001328 Msa0660880:CDS
TCTGCATATCTATTGTACTA+TGG 0.382229 4_3:-72001024 Msa0660880:CDS
ATGATGCAATTCATTCTTCT+CGG 0.382856 4_3:+71999557 None:intergenic
TTAGCTGATTTGTTCGTTTG+AGG 0.395892 4_3:-72002168 Msa0660880:five_prime_UTR
CGATTCATGCCACACCATTC+CGG 0.400750 4_3:-72002401 Msa0660880:five_prime_UTR
CCAAGGGCCATTTGAGTCTC+TGG 0.405945 4_3:-71999363 Msa0660880:CDS
TAAAGCTGTTAAGGAGATGA+AGG 0.412584 4_3:+72002305 None:intergenic
ATAACCTTCTCTTGCTCTGC+AGG 0.415381 4_3:+71999206 None:intergenic
GAAATACAAGGCAACTATAT+AGG 0.419249 4_3:+71998844 None:intergenic
CTCATAACATAAACATAGGT+TGG 0.424399 4_3:-72002427 Msa0660880:five_prime_UTR
ATGCTGGTGCCTAAATTTCA+AGG 0.430024 4_3:-71999300 Msa0660880:CDS
TGAGGAAAAGATGTAGGAGT+TGG 0.437219 4_3:+71999491 None:intergenic
ACCTATTCAGCAGGGACAAT+GGG 0.444059 4_3:-72001393 Msa0660880:CDS
AATACTAACGACCGATTGTC+AGG 0.447228 4_3:+71998971 None:intergenic
AGTGATGTTAGAGTGATATC+AGG 0.447610 4_3:+72001419 None:intergenic
ATGCCACACCATTCCGGTTG+CGG 0.449706 4_3:-72002395 Msa0660880:five_prime_UTR
GAATTGCTTAAATCTCCAAT+TGG 0.451744 4_3:+71999413 None:intergenic
TGGAGGTTGGCTGTCATATA+TGG 0.452519 4_3:+71999715 None:intergenic
GAAGGAGGCGTTGAAAATTC+CGG 0.455460 4_3:+72002323 None:intergenic
CTCCGATACAGTGCTTCATC+AGG 0.459633 4_3:-72001062 Msa0660880:CDS
GCCCATTGTCCCTGCTGAAT+AGG 0.468212 4_3:+72001392 None:intergenic
CCAAAAGGTAAAGATCCAAT+TGG 0.470093 4_3:-71999428 Msa0660880:CDS
TAAAATTAAATTTAGTTGCA+GGG 0.470751 4_3:+71998897 None:intergenic
ATCACTTGAACCTATTCAGC+AGG 0.471218 4_3:-72001402 Msa0660880:CDS
TAGTTACACGCTGGAACTCT+TGG 0.471948 4_3:+71999629 None:intergenic
AGCCAACCTCCACACGGAGC+TGG 0.473234 4_3:-71999704 Msa0660880:CDS
GGCATGAACAGCTGCAATGC+TGG 0.474704 4_3:-71999316 Msa0660880:CDS
AATGAAATCTCCTGCTGGAC+CGG 0.476146 4_3:+71999666 None:intergenic
GCGGAGAACATTCAGCTCAT+AGG 0.477645 4_3:+71999589 None:intergenic
CTTGTATTTCTCACCACACA+TGG 0.480634 4_3:-71998831 Msa0660880:three_prime_UTR
CGGAATGGTGTGGCATGAAT+CGG 0.481540 4_3:+72002402 None:intergenic
AACTCAAGGAGATGAGGGAT+GGG 0.484739 4_3:-72001511 Msa0660880:CDS
CTGAATGTTCTCCGCACTAG+AGG 0.484848 4_3:-71999581 Msa0660880:CDS
CGTTCCAGCAATGCGTATGT+TGG 0.488866 4_3:-71999867 Msa0660880:CDS
AACCAAATAGCCGGTCCAGC+AGG 0.493265 4_3:-71999676 Msa0660880:CDS
TTTACTCATAACATAAACAT+AGG 0.496397 4_3:-72002431 Msa0660880:five_prime_UTR
AATGGCCCTTGGCTCTGAAC+CGG 0.498889 4_3:+71999374 None:intergenic
GTAATTTGAGGAAAAGATGT+AGG 0.503684 4_3:+71999485 None:intergenic
GAACTCAAGGAGATGAGGGA+TGG 0.505860 4_3:-72001512 Msa0660880:CDS
TGCAGCTGTTCATGCCATCT+GGG 0.506117 4_3:+71999323 None:intergenic
GTTTCCTATTTCGTTAAAGC+AGG 0.506221 4_3:-72001204 Msa0660880:intron
AAACCAGCGGACTATAACCA+TGG 0.507514 4_3:+71999059 None:intergenic
TTTCACGGCGGTGTTGGTGG+CGG 0.510082 4_3:-72002364 Msa0660880:five_prime_UTR
GATGTTTGCAGTTATTGTGC+TGG 0.512169 4_3:-72001585 Msa0660880:intron
CCTTCCTGAACAGCTGAGAC+AGG 0.514005 4_3:+71999524 None:intergenic
GAGTTGCCGGTTCAGAGCCA+AGG 0.518280 4_3:-71999380 Msa0660880:CDS
CAGGAGATTTCATTCTAGGC+AGG 0.528326 4_3:-71999657 Msa0660880:CDS
CATGGATCTCATTCACATGC+TGG 0.528401 4_3:+71999077 None:intergenic
TTGAGTACCAGAGACTCAAA+TGG 0.530012 4_3:+71999356 None:intergenic
AGTTAAGAACTTTCAACTTG+TGG 0.534362 4_3:-71999258 Msa0660880:CDS
GTGAGATGCAGCCTGACAAT+CGG 0.535093 4_3:-71998982 Msa0660880:three_prime_UTR
GAAACGACAACAGCACGTGC+AGG 0.536741 4_3:+72001305 None:intergenic
CCTAGAATGAAATCTCCTGC+TGG 0.538624 4_3:+71999661 None:intergenic
AAATGCTCATCAGTAATTTG+AGG 0.539761 4_3:+71999473 None:intergenic
CCTGTCTCAGCTGTTCAGGA+AGG 0.540458 4_3:-71999524 Msa0660880:CDS
TGTCGTTGAGAAGCATAGTA+CGG 0.541748 4_3:-72001535 Msa0660880:CDS
CTGTCTCAGCTGTTCAGGAA+GGG 0.541956 4_3:-71999523 Msa0660880:CDS
CGAGGAGAGGTGTGGCAAGT+AGG 0.542255 4_3:-72001475 Msa0660880:CDS
GCATATCGCAAAGGCTTGGA+AGG 0.543599 4_3:+71999121 None:intergenic
GCTGTCATATATGGTGAACT+TGG 0.544644 4_3:+71999724 None:intergenic
GTGCTTCTGTGTGTAAATCA+TGG 0.549837 4_3:-72001280 Msa0660880:CDS
CCAGAGACTCAAATGGCCCT+TGG 0.550663 4_3:+71999363 None:intergenic
TTCCAGCTCCGTGTGGAGGT+TGG 0.551308 4_3:+71999702 None:intergenic
AACCTATTCAGCAGGGACAA+TGG 0.551680 4_3:-72001394 Msa0660880:CDS
ACGTGCAGGCCAAGAAGTCT+CGG 0.554427 4_3:+72001319 None:intergenic
AAGCATAGTACGGGAACTCA+AGG 0.555180 4_3:-72001525 Msa0660880:CDS
TCTGAACCGGCAACTCTGCG+AGG 0.556736 4_3:+71999387 None:intergenic
AAGGAGATGAGGGATGGGAT+TGG 0.557067 4_3:-72001506 Msa0660880:CDS
GATCCATGGTTATAGTCCGC+TGG 0.557580 4_3:-71999062 Msa0660880:three_prime_UTR
TGCTACTTGATATAATTCGA+AGG 0.558581 4_3:-72001352 Msa0660880:CDS
TGTCTCAGCTGTTCAGGAAG+GGG 0.560697 4_3:-71999522 Msa0660880:CDS
ATCGGAGAATCACGAGGACC+CGG 0.561657 4_3:+72001078 None:intergenic
CTCCTGATGAAGCACTGTAT+CGG 0.562380 4_3:+72001060 None:intergenic
TTCTTCTCGGCCCTCTAGTG+CGG 0.564773 4_3:+71999570 None:intergenic
AATGGATTCCGCAACCGGAA+TGG 0.565534 4_3:+72002387 None:intergenic
GTCTCAGCTGTTCAGGAAGG+GGG 0.566290 4_3:-71999521 Msa0660880:CDS
CTGAACCGGCAACTCTGCGA+GGG 0.569008 4_3:+71999388 None:intergenic
GTCGTTGAGAAGCATAGTAC+GGG 0.569276 4_3:-72001534 Msa0660880:CDS
ATATCTATTGTACTATGGAC+TGG 0.572719 4_3:-72001019 Msa0660880:CDS
AGGGCTATAGAATGACATAC+AGG 0.575549 4_3:+71998916 None:intergenic
GCTACTTGATATAATTCGAA+GGG 0.575810 4_3:-72001351 Msa0660880:CDS
GCGTCAGCACCAGAGCCAAA+AGG 0.578551 4_3:-71999443 Msa0660880:CDS
TCAAGCATATCGCAAAGGCT+TGG 0.579509 4_3:+71999117 None:intergenic
AACATTCAGCTCATAGGCAA+TGG 0.582469 4_3:+71999595 None:intergenic
GAACCAAATCGGAGAAACAG+AGG 0.582674 4_3:+72002262 None:intergenic
CTGGAATACAACCAAATAGC+CGG 0.589720 4_3:-71999685 Msa0660880:CDS
CGATACAGTGCTTCATCAGG+AGG 0.590035 4_3:-72001059 Msa0660880:CDS
TTATGCACAATTCTTCAGCA+TGG 0.590762 4_3:-71999004 Msa0660880:three_prime_UTR
TACGGGAACTCAAGGAGATG+AGG 0.591073 4_3:-72001517 Msa0660880:CDS
CTGAACAATCTCTTGTGTAA+CGG 0.594307 4_3:+72001253 None:intergenic
ACGGGAACTCAAGGAGATGA+GGG 0.594362 4_3:-72001516 Msa0660880:CDS
TTCTCCTGCAGAGCAAGAGA+AGG 0.597006 4_3:-71999210 Msa0660880:CDS
ATGCGTATGTTGGAAAACTC+AGG 0.602255 4_3:-71999857 Msa0660880:intron
AGTTGCCGGTTCAGAGCCAA+GGG 0.602888 4_3:-71999379 Msa0660880:CDS
GCAGGAGAAACATTATGAGA+TGG 0.604319 4_3:+71999224 None:intergenic
CAAGTAGGCATTCACAGCGT+CGG 0.608761 4_3:-72001460 Msa0660880:CDS
GGAAGGCAGAGAGTGGATAA+CGG 0.610357 4_3:+71999138 None:intergenic
GCTGCTCAAGCATATCGCAA+AGG 0.610612 4_3:+71999112 None:intergenic
TTTCAAGGGCCGTGTTACAG+TGG 0.611483 4_3:-71999285 Msa0660880:CDS
CAGCATGTGAATGAGATCCA+TGG 0.613020 4_3:-71999076 Msa0660880:exon
ATAATGAAGCTTCTAAAACC+CGG 0.616872 4_3:+72002221 None:intergenic
TGAATGTTCTCCGCACTAGA+GGG 0.618617 4_3:-71999580 Msa0660880:CDS
AAGGCTTGGAAGGCAGAGAG+TGG 0.622272 4_3:+71999131 None:intergenic
TTCCGGCGAAAACCCGAAGA+GGG 0.630212 4_3:+72002340 None:intergenic
TTCTGTGTGTAAATCATGGA+GGG 0.630242 4_3:-72001276 Msa0660880:CDS
AGATATGATGAAGTCTGTGC+CGG 0.635175 4_3:+71999911 None:intergenic
TTGTATTTCTCACCACACAT+GGG 0.641041 4_3:-71998830 Msa0660880:three_prime_UTR
GTTCAGACTCCCGAAGAGTG+TGG 0.642949 4_3:-72001236 Msa0660880:CDS
TGCTGGTGCCTAAATTTCAA+GGG 0.642974 4_3:-71999299 Msa0660880:CDS
TAACTGAAGCCACTGTAACA+CGG 0.643817 4_3:+71999276 None:intergenic
ATTCCGGCGAAAACCCGAAG+AGG 0.644601 4_3:+72002339 None:intergenic
TGTATTCCAGCTCCGTGTGG+AGG 0.645160 4_3:+71999698 None:intergenic
CTTCTGTGTGTAAATCATGG+AGG 0.649209 4_3:-72001277 Msa0660880:CDS
ATTGGTAATACGTCGAGGAG+AGG 0.649495 4_3:-72001488 Msa0660880:CDS
ATATCAAGTAGCAATTCAGA+TGG 0.650336 4_3:+72001362 None:intergenic
CATGTGTGGTGAGAAATACA+AGG 0.651293 4_3:+71998832 None:intergenic
ATTCCGCAACCGGAATGGTG+TGG 0.659382 4_3:+72002392 None:intergenic
GGTTGTATTCCAGCTCCGTG+TGG 0.669899 4_3:+71999695 None:intergenic
CACTGTATCGGAGAATCACG+AGG 0.670191 4_3:+72001072 None:intergenic
GATACAGTGCTTCATCAGGA+GGG 0.688983 4_3:-72001058 Msa0660880:CDS
TCACTTGAACCTATTCAGCA+GGG 0.690245 4_3:-72001401 Msa0660880:CDS
TAATACGTCGAGGAGAGGTG+TGG 0.694801 4_3:-72001483 Msa0660880:CDS
CTAACAATATAGTTACACGC+TGG 0.696992 4_3:+71999620 None:intergenic
ATGGGATTGGTAATACGTCG+AGG 0.700501 4_3:-72001493 Msa0660880:CDS
TATGACAGCCAACCTCCACA+CGG 0.700970 4_3:-71999710 Msa0660880:CDS
AGCTGTTAAGGAGATGAAGG+AGG 0.704439 4_3:+72002308 None:intergenic
ACAACAGCAATACCCATGTG+TGG 0.714668 4_3:+71998818 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATATTGTTATGTTGT+TGG - chr4_3:71999333-71999352 Msa0660880:CDS 15.0%
!!! TTATTGTAATGCTAAATTTT+AGG - chr4_3:72000774-72000793 Msa0660880:intron 15.0%
!!! TATTGTAATGCTAAATTTTA+GGG - chr4_3:72000775-72000794 Msa0660880:intron 15.0%
!! TAAAATTAAATTTAGTTGCA+GGG + chr4_3:72002400-72002419 None:intergenic 15.0%
!! TTTACTCATAACATAAACAT+AGG - chr4_3:71998863-71998882 Msa0660880:three_prime_UTR 20.0%
!! TTTGTAAAATTGTGTTTGTT+AGG - chr4_3:71999504-71999523 Msa0660880:CDS 20.0%
!!! TTGTAAAATTGTGTTTGTTA+GGG - chr4_3:71999505-71999524 Msa0660880:CDS 20.0%
!! GATATTAGCATACAAAAAAT+TGG - chr4_3:71999613-71999632 Msa0660880:CDS 20.0%
!!! TTTTCATTCTTTTTTCTCAA+AGG - chr4_3:72000349-72000368 Msa0660880:intron 20.0%
!!! TTTCATTCTTTTTTCTCAAA+GGG - chr4_3:72000350-72000369 Msa0660880:intron 20.0%
!! TTATGAATTTAGATCTTGAA+CGG - chr4_3:72000419-72000438 Msa0660880:intron 20.0%
!!! TTTTATTGCACTAAATATGT+AGG - chr4_3:72000445-72000464 Msa0660880:intron 20.0%
!! TTTATTGCACTAAATATGTA+GGG - chr4_3:72000446-72000465 Msa0660880:intron 20.0%
!! ACTTTCTCAAATTAATTACT+TGG - chr4_3:72000524-72000543 Msa0660880:intron 20.0%
!!! TTTAAGCAATTTTCAAGTAT+TGG + chr4_3:72000829-72000848 None:intergenic 20.0%
!!! TTTAAAATCACCCAAATAAA+GGG + chr4_3:72000966-72000985 None:intergenic 20.0%
!! TACCAATTTCAAAATCATTA+AGG + chr4_3:72001271-72001290 None:intergenic 20.0%
!!! AACTGATGATAAATTTTGAT+AGG - chr4_3:72001531-72001550 Msa0660880:CDS 20.0%
!! TGGAAAAGATATATTTACTA+TGG - chr4_3:72002129-72002148 Msa0660880:intron 20.0%
!! CTAAAATTAAATTTAGTTGC+AGG + chr4_3:72002401-72002420 None:intergenic 20.0%
! AAAAACAAGAAGAACCAAAT+CGG + chr4_3:71999046-71999065 None:intergenic 25.0%
!!! TTGGTTCTTCTTGTTTTTTA+TGG - chr4_3:71999048-71999067 Msa0660880:three_prime_UTR 25.0%
!!! TTTTAGAAGCTTCATTATCA+AGG - chr4_3:71999078-71999097 Msa0660880:exon 25.0%
! ATTTATGAATGTGAGCAAAT+AGG - chr4_3:71999443-71999462 Msa0660880:CDS 25.0%
! TTTATGAATGTGAGCAAATA+GGG - chr4_3:71999444-71999463 Msa0660880:CDS 25.0%
!!! ATGTGGGTTTTTTTGTTTTT+AGG - chr4_3:71999480-71999499 Msa0660880:CDS 25.0%
!!! TGTTTTTATAAACTTCAGAG+TGG - chr4_3:71999664-71999683 Msa0660880:CDS 25.0%
!!! TTAATTCTTCACTCCTTTTT+TGG - chr4_3:72000116-72000135 Msa0660880:intron 25.0%
!!! ACTTTTTGTTTATGAATAGC+CGG - chr4_3:72000197-72000216 Msa0660880:intron 25.0%
!!! TTGAATCACTTTTGAAAACT+TGG - chr4_3:72000393-72000412 Msa0660880:intron 25.0%
! TTAATTACACGTGCATTATT+TGG - chr4_3:72000687-72000706 Msa0660880:intron 25.0%
!!! AAATTTTAGGGCTAATTCTA+CGG - chr4_3:72000787-72000806 Msa0660880:intron 25.0%
! CAAGTAATTTCTTAACTATG+AGG + chr4_3:72000873-72000892 None:intergenic 25.0%
!! TCATTTGTTTCCCTTTATTT+GGG - chr4_3:72000953-72000972 Msa0660880:intron 25.0%
!!! CTTTAAAATCACCCAAATAA+AGG + chr4_3:72000967-72000986 None:intergenic 25.0%
!!! ATAGATGTCTTTTTCATTGT+TGG - chr4_3:72001130-72001149 Msa0660880:intron 25.0%
!!! TTTTTAACTTCTGACTTGAA+TGG - chr4_3:72001176-72001195 Msa0660880:intron 25.0%
!!! TTTTAACTTCTGACTTGAAT+GGG - chr4_3:72001177-72001196 Msa0660880:intron 25.0%
! AATCATTAAGGTGAATTGAA+CGG + chr4_3:72001259-72001278 None:intergenic 25.0%
!!! CACCTTAATGATTTTGAAAT+TGG - chr4_3:72001266-72001285 Msa0660880:CDS 25.0%
!!! TTCTGTTTTTTCTTATACAG+CGG - chr4_3:72001309-72001328 Msa0660880:CDS 25.0%
!! AGATAAAATAAAGAGTGTGT+TGG + chr4_3:72001508-72001527 None:intergenic 25.0%
!! TTTTGATAGGTCTAACTTTT+TGG - chr4_3:72001544-72001563 Msa0660880:exon 25.0%
!! TTTGATAGGTCTAACTTTTT+GGG - chr4_3:72001545-72001564 Msa0660880:exon 25.0%
! ATATAGATGAAAAAAACCAG+CGG + chr4_3:72002251-72002270 None:intergenic 25.0%
!! TCTTTTATGTTAGTTGTATC+TGG - chr4_3:72002347-72002366 Msa0660880:five_prime_UTR 25.0%
CTCATAACATAAACATAGGT+TGG - chr4_3:71998867-71998886 Msa0660880:three_prime_UTR 30.0%
!!! CTTCTTGTTTTTTATGGATC+CGG - chr4_3:71999054-71999073 Msa0660880:three_prime_UTR 30.0%
!!! TTCTTGTTTTTTATGGATCC+GGG - chr4_3:71999055-71999074 Msa0660880:three_prime_UTR 30.0%
!! ATAATGAAGCTTCTAAAACC+CGG + chr4_3:71999076-71999095 None:intergenic 30.0%
!!! CTGTTGATGATGATGTTTTT+AGG - chr4_3:71999310-71999329 Msa0660880:CDS 30.0%
! TGAAGTATTTGCAAAAAGCT+AGG - chr4_3:71999388-71999407 Msa0660880:CDS 30.0%
ATATCAAGTAGCAATTCAGA+TGG + chr4_3:71999935-71999954 None:intergenic 30.0%
! TGCTACTTGATATAATTCGA+AGG - chr4_3:71999942-71999961 Msa0660880:CDS 30.0%
GCTACTTGATATAATTCGAA+GGG - chr4_3:71999943-71999962 Msa0660880:CDS 30.0%
AACAACAATTACGCCAAAAA+AGG + chr4_3:72000132-72000151 None:intergenic 30.0%
AAGATACAGAACAACCAAAA+TGG + chr4_3:72000168-72000187 None:intergenic 30.0%
!! CTTTTTGTTTATGAATAGCC+GGG - chr4_3:72000198-72000217 Msa0660880:intron 30.0%
TCTGCATATCTATTGTACTA+TGG - chr4_3:72000270-72000289 Msa0660880:intron 30.0%
ATATCTATTGTACTATGGAC+TGG - chr4_3:72000275-72000294 Msa0660880:intron 30.0%
!! GATGTTGATTCGACAAAAAA+AGG - chr4_3:72000896-72000915 Msa0660880:intron 30.0%
! TTGATTCGACAAAAAAAGGA+AGG - chr4_3:72000900-72000919 Msa0660880:intron 30.0%
TGATTCGACAAAAAAAGGAA+GGG - chr4_3:72000901-72000920 Msa0660880:intron 30.0%
CTCATTTGTTTCCCTTTATT+TGG - chr4_3:72000952-72000971 Msa0660880:intron 30.0%
! AAACTAGAAGTGCATTTCTT+TGG - chr4_3:72001056-72001075 Msa0660880:CDS 30.0%
! TTTGGAGTCATAGTATGAAA+TGG - chr4_3:72001074-72001093 Msa0660880:CDS 30.0%
TTGGAGTCATAGTATGAAAT+GGG - chr4_3:72001075-72001094 Msa0660880:CDS 30.0%
TATTAGCTGCCAAAAAGATA+AGG - chr4_3:72001353-72001372 Msa0660880:CDS 30.0%
GTGTTGGAAATTTGAAAAGT+GGG + chr4_3:72001492-72001511 None:intergenic 30.0%
TGTGTTGGAAATTTGAAAAG+TGG + chr4_3:72001493-72001512 None:intergenic 30.0%
ATGATGCAATTCATTCTTCT+CGG + chr4_3:72001740-72001759 None:intergenic 30.0%
GTAATTTGAGGAAAAGATGT+AGG + chr4_3:72001812-72001831 None:intergenic 30.0%
AAATGCTCATCAGTAATTTG+AGG + chr4_3:72001824-72001843 None:intergenic 30.0%
GAATTGCTTAAATCTCCAAT+TGG + chr4_3:72001884-72001903 None:intergenic 30.0%
AGTTAAGAACTTTCAACTTG+TGG - chr4_3:72002036-72002055 Msa0660880:intron 30.0%
GAAATACAAGGCAACTATAT+AGG + chr4_3:72002453-72002472 None:intergenic 30.0%
TAAAGCTGTTAAGGAGATGA+AGG + chr4_3:71998992-71999011 None:intergenic 35.0%
!! TTAGCTGATTTGTTCGTTTG+AGG - chr4_3:71999126-71999145 Msa0660880:CDS 35.0%
! TGTTCGTTTGAGGATTTTTC+AGG - chr4_3:71999136-71999155 Msa0660880:CDS 35.0%
!!! TTTGAGGATTTTTCAGGTGT+TGG - chr4_3:71999142-71999161 Msa0660880:CDS 35.0%
!!! TTGAGGATTTTTCAGGTGTT+GGG - chr4_3:71999143-71999162 Msa0660880:CDS 35.0%
!! TTTGTAGATCGTTTTGACCA+TGG - chr4_3:71999230-71999249 Msa0660880:CDS 35.0%
ACAACTATTTACACACACCA+TGG + chr4_3:71999250-71999269 None:intergenic 35.0%
! AAAGCTAGGTTTTTGTGATG+TGG - chr4_3:71999402-71999421 Msa0660880:CDS 35.0%
! AAGCTAGGTTTTTGTGATGT+GGG - chr4_3:71999403-71999422 Msa0660880:CDS 35.0%
!!! AGGGTTTTTTGATGTGAATG+TGG - chr4_3:71999463-71999482 Msa0660880:CDS 35.0%
!!! GGGTTTTTTGATGTGAATGT+GGG - chr4_3:71999464-71999483 Msa0660880:CDS 35.0%
CAAAGTACAAACAGATACAC+TGG + chr4_3:71999565-71999584 None:intergenic 35.0%
! TTCAGAGTGGAGAATGATTT+TGG - chr4_3:71999677-71999696 Msa0660880:CDS 35.0%
AGTGATGTTAGAGTGATATC+AGG + chr4_3:71999878-71999897 None:intergenic 35.0%
TTCTGTGTGTAAATCATGGA+GGG - chr4_3:72000018-72000037 Msa0660880:intron 35.0%
CTGAACAATCTCTTGTGTAA+CGG + chr4_3:72000044-72000063 None:intergenic 35.0%
GTTTCCTATTTCGTTAAAGC+AGG - chr4_3:72000090-72000109 Msa0660880:intron 35.0%
ATCACCTGCTTTAACGAAAT+AGG + chr4_3:72000097-72000116 None:intergenic 35.0%
! TTTTCGCTGCTTATCCATTT+TGG - chr4_3:72000151-72000170 Msa0660880:intron 35.0%
CACATTGAAGCAAACTTACA+TGG + chr4_3:72000303-72000322 None:intergenic 35.0%
! CATGTAAGTTTGCTTCAATG+TGG - chr4_3:72000301-72000320 Msa0660880:intron 35.0%
!! TTTCAAGTATTGGTCTGATG+CGG + chr4_3:72000819-72000838 None:intergenic 35.0%
! GAAACAAATGAGTTGAGTTG+AGG + chr4_3:72000944-72000963 None:intergenic 35.0%
!!! TTTGGGTGATTTTAAAGTGC+CGG - chr4_3:72000970-72000989 Msa0660880:intron 35.0%
GAGGAAAACAAAGCACAAAT+CGG + chr4_3:72001237-72001256 None:intergenic 35.0%
CACAGACTTCATCATATCTT+TGG - chr4_3:72001387-72001406 Msa0660880:CDS 35.0%
! TGGAAAACTCAGGTAAGTTT+TGG - chr4_3:72001447-72001466 Msa0660880:CDS 35.0%
CTAACAATATAGTTACACGC+TGG + chr4_3:72001677-72001696 None:intergenic 35.0%
! CCAATTGGATCTTTACCTTT+TGG + chr4_3:72001869-72001888 None:intergenic 35.0%
CCAAAAGGTAAAGATCCAAT+TGG - chr4_3:72001866-72001885 Msa0660880:intron 35.0%
ATCTTGCAGTTTGGAAAGAT+TGG - chr4_3:72002109-72002128 Msa0660880:intron 35.0%
TTATGCACAATTCTTCAGCA+TGG - chr4_3:72002290-72002309 Msa0660880:five_prime_UTR 35.0%
TTGTATTTCTCACCACACAT+GGG - chr4_3:72002464-72002483 Msa0660880:five_prime_UTR 35.0%
! TGAAAAATGGATTCCGCAAC+CGG + chr4_3:71998915-71998934 None:intergenic 40.0%
!! GTTGCGGAATCCATTTTTCA+CGG - chr4_3:71998915-71998934 Msa0660880:three_prime_UTR 40.0%
!!! GGAGGGTTTTAAAGCTGTTA+AGG + chr4_3:71999001-71999020 None:intergenic 40.0%
GAAACAGAGGCAGAAAAACA+CGG + chr4_3:71999022-71999041 None:intergenic 40.0%
GATGTTTGCAGTTATTGTGC+TGG - chr4_3:71999709-71999728 Msa0660880:CDS 40.0%
! TGTCGTTGAGAAGCATAGTA+CGG - chr4_3:71999759-71999778 Msa0660880:intron 40.0%
ATCACTTGAACCTATTCAGC+AGG - chr4_3:71999892-71999911 Msa0660880:CDS 40.0%
TCACTTGAACCTATTCAGCA+GGG - chr4_3:71999893-71999912 Msa0660880:CDS 40.0%
GTGCTTCTGTGTGTAAATCA+TGG - chr4_3:72000014-72000033 Msa0660880:intron 40.0%
CTTCTGTGTGTAAATCATGG+AGG - chr4_3:72000017-72000036 Msa0660880:intron 40.0%
GTTTGAACACGTGCATTACA+TGG - chr4_3:72000548-72000567 Msa0660880:intron 40.0%
TTCGACAAAAAAAGGAAGGG+AGG - chr4_3:72000904-72000923 Msa0660880:intron 40.0%
GACTTGAATGGGACAGAAAT+TGG - chr4_3:72001188-72001207 Msa0660880:intron 40.0%
AACAAAGCACAAATCGGTTG+AGG + chr4_3:72001231-72001250 None:intergenic 40.0%
CATTAAGGTGAATTGAACGG+AGG + chr4_3:72001256-72001275 None:intergenic 40.0%
TAGCTGCCAAAAAGATAAGG+AGG - chr4_3:72001356-72001375 Msa0660880:CDS 40.0%
AGCTGCCAAAAAGATAAGGA+GGG - chr4_3:72001357-72001376 Msa0660880:CDS 40.0%
AAAAAGATAAGGAGGGCAAC+CGG - chr4_3:72001364-72001383 Msa0660880:CDS 40.0%
AGATATGATGAAGTCTGTGC+CGG + chr4_3:72001386-72001405 None:intergenic 40.0%
! TTTTCCAACATACGCATTGC+TGG + chr4_3:72001434-72001453 None:intergenic 40.0%
ATGCGTATGTTGGAAAACTC+AGG - chr4_3:72001437-72001456 Msa0660880:CDS 40.0%
GCTGTCATATATGGTGAACT+TGG + chr4_3:72001573-72001592 None:intergenic 40.0%
CTGGAATACAACCAAATAGC+CGG - chr4_3:72001609-72001628 Msa0660880:intron 40.0%
AACATTCAGCTCATAGGCAA+TGG + chr4_3:72001702-72001721 None:intergenic 40.0%
TGAGGAAAAGATGTAGGAGT+TGG + chr4_3:72001806-72001825 None:intergenic 40.0%
TTGAGTACCAGAGACTCAAA+TGG + chr4_3:72001941-72001960 None:intergenic 40.0%
TCAAAAACAAGTCTCCCAGA+TGG - chr4_3:72001957-72001976 Msa0660880:intron 40.0%
ATGCTGGTGCCTAAATTTCA+AGG - chr4_3:72001994-72002013 Msa0660880:intron 40.0%
TGCTGGTGCCTAAATTTCAA+GGG - chr4_3:72001995-72002014 Msa0660880:intron 40.0%
TAACACGGCCCTTGAAATTT+AGG + chr4_3:72002006-72002025 None:intergenic 40.0%
TAACTGAAGCCACTGTAACA+CGG + chr4_3:72002021-72002040 None:intergenic 40.0%
GCAGGAGAAACATTATGAGA+TGG + chr4_3:72002073-72002092 None:intergenic 40.0%
GAGAAGGTTATCTTGCAGTT+TGG - chr4_3:72002100-72002119 Msa0660880:intron 40.0%
AATACTAACGACCGATTGTC+AGG + chr4_3:72002326-72002345 None:intergenic 40.0%
AGGGCTATAGAATGACATAC+AGG + chr4_3:72002381-72002400 None:intergenic 40.0%
CATGTGTGGTGAGAAATACA+AGG + chr4_3:72002465-72002484 None:intergenic 40.0%
CTTGTATTTCTCACCACACA+TGG - chr4_3:72002463-72002482 Msa0660880:five_prime_UTR 40.0%
!! GAAGGAGGCGTTGAAAATTC+CGG + chr4_3:71998974-71998993 None:intergenic 45.0%
AGCTGTTAAGGAGATGAAGG+AGG + chr4_3:71998989-71999008 None:intergenic 45.0%
GAACCAAATCGGAGAAACAG+AGG + chr4_3:71999035-71999054 None:intergenic 45.0%
! GTCGTTGAGAAGCATAGTAC+GGG - chr4_3:71999760-71999779 Msa0660880:intron 45.0%
AAGCATAGTACGGGAACTCA+AGG - chr4_3:71999769-71999788 Msa0660880:intron 45.0%
AACTCAAGGAGATGAGGGAT+GGG - chr4_3:71999783-71999802 Msa0660880:intron 45.0%
! ATGGGATTGGTAATACGTCG+AGG - chr4_3:71999801-71999820 Msa0660880:intron 45.0%
! ATTGGTAATACGTCGAGGAG+AGG - chr4_3:71999806-71999825 Msa0660880:intron 45.0%
AACCTATTCAGCAGGGACAA+TGG - chr4_3:71999900-71999919 Msa0660880:CDS 45.0%
ACCTATTCAGCAGGGACAAT+GGG - chr4_3:71999901-71999920 Msa0660880:CDS 45.0%
TAGAAGAGACCGAGACTTCT+TGG - chr4_3:71999966-71999985 Msa0660880:CDS 45.0%
GTCAATCTTCCACACTCTTC+GGG + chr4_3:72000070-72000089 None:intergenic 45.0%
CGTCAATCTTCCACACTCTT+CGG + chr4_3:72000071-72000090 None:intergenic 45.0%
!! CTCCTGATGAAGCACTGTAT+CGG + chr4_3:72000237-72000256 None:intergenic 45.0%
GATACAGTGCTTCATCAGGA+GGG - chr4_3:72000236-72000255 Msa0660880:intron 45.0%
GACAAAAAAAGGAAGGGAGG+CGG - chr4_3:72000907-72000926 Msa0660880:intron 45.0%
ACAAAAAAAGGAAGGGAGGC+GGG - chr4_3:72000908-72000927 Msa0660880:intron 45.0%
CTAAAATCCGACAGCCTCTA+GGG + chr4_3:72001000-72001019 None:intergenic 45.0%
! TCTAAAATCCGACAGCCTCT+AGG + chr4_3:72001001-72001020 None:intergenic 45.0%
ACAGAAATTGGCTGAACCTG+TGG - chr4_3:72001200-72001219 Msa0660880:intron 45.0%
! GGTTGCCCTCCTTATCTTTT+TGG + chr4_3:72001365-72001384 None:intergenic 45.0%
! TGGAGGTTGGCTGTCATATA+TGG + chr4_3:72001582-72001601 None:intergenic 45.0%
AATGAAATCTCCTGCTGGAC+CGG + chr4_3:72001631-72001650 None:intergenic 45.0%
CCTAGAATGAAATCTCCTGC+TGG + chr4_3:72001636-72001655 None:intergenic 45.0%
CCAGCAGGAGATTTCATTCT+AGG - chr4_3:72001633-72001652 Msa0660880:intron 45.0%
CAGGAGATTTCATTCTAGGC+AGG - chr4_3:72001637-72001656 Msa0660880:intron 45.0%
TAGTTACACGCTGGAACTCT+TGG + chr4_3:72001668-72001687 None:intergenic 45.0%
TGAATGTTCTCCGCACTAGA+GGG - chr4_3:72001714-72001733 Msa0660880:intron 45.0%
TATACCTGTCTCAGCTGTTC+AGG - chr4_3:72001766-72001785 Msa0660880:intron 45.0%
!!! GGATCTTTACCTTTTGGCTC+TGG + chr4_3:72001863-72001882 None:intergenic 45.0%
ATAACCTTCTCTTGCTCTGC+AGG + chr4_3:72002091-72002110 None:intergenic 45.0%
TCAAGCATATCGCAAAGGCT+TGG + chr4_3:72002180-72002199 None:intergenic 45.0%
CATGGATCTCATTCACATGC+TGG + chr4_3:72002220-72002239 None:intergenic 45.0%
CAGCATGTGAATGAGATCCA+TGG - chr4_3:72002218-72002237 Msa0660880:five_prime_UTR 45.0%
!! AAACCAGCGGACTATAACCA+TGG + chr4_3:72002238-72002257 None:intergenic 45.0%
ACAACAGCAATACCCATGTG+TGG + chr4_3:72002479-72002498 None:intergenic 45.0%
CGGAATGGTGTGGCATGAAT+CGG + chr4_3:71998895-71998914 None:intergenic 50.0%
CGATTCATGCCACACCATTC+CGG - chr4_3:71998893-71998912 Msa0660880:three_prime_UTR 50.0%
! AATGGATTCCGCAACCGGAA+TGG + chr4_3:71998910-71998929 None:intergenic 50.0%
!! GCGGAATCCATTTTTCACGG+CGG - chr4_3:71998918-71998937 Msa0660880:three_prime_UTR 50.0%
!! TCCATTTTTCACGGCGGTGT+TGG - chr4_3:71998924-71998943 Msa0660880:three_prime_UTR 50.0%
ACCAACACCGCCGTGAAAAA+TGG + chr4_3:71998928-71998947 None:intergenic 50.0%
!! ATTTTTCACGGCGGTGTTGG+TGG - chr4_3:71998927-71998946 Msa0660880:three_prime_UTR 50.0%
CAGAGGCAGAAAAACACGGA+GGG + chr4_3:71999018-71999037 None:intergenic 50.0%
ACAGAGGCAGAAAAACACGG+AGG + chr4_3:71999019-71999038 None:intergenic 50.0%
! CTGCCTCTGTTTCTCCGATT+TGG - chr4_3:71999029-71999048 Msa0660880:three_prime_UTR 50.0%
TACGGGAACTCAAGGAGATG+AGG - chr4_3:71999777-71999796 Msa0660880:intron 50.0%
ACGGGAACTCAAGGAGATGA+GGG - chr4_3:71999778-71999797 Msa0660880:intron 50.0%
GAACTCAAGGAGATGAGGGA+TGG - chr4_3:71999782-71999801 Msa0660880:intron 50.0%
AAGGAGATGAGGGATGGGAT+TGG - chr4_3:71999788-71999807 Msa0660880:intron 50.0%
TAATACGTCGAGGAGAGGTG+TGG - chr4_3:71999811-71999830 Msa0660880:intron 50.0%
CAAGTAGGCATTCACAGCGT+CGG - chr4_3:71999834-71999853 Msa0660880:intron 50.0%
CACTGTATCGGAGAATCACG+AGG + chr4_3:72000225-72000244 None:intergenic 50.0%
CTCCGATACAGTGCTTCATC+AGG - chr4_3:72000232-72000251 Msa0660880:intron 50.0%
CGATACAGTGCTTCATCAGG+AGG - chr4_3:72000235-72000254 Msa0660880:intron 50.0%
ATCGGTTGAGGTGTATCCAC+AGG + chr4_3:72001219-72001238 None:intergenic 50.0%
CGTTCCAGCAATGCGTATGT+TGG - chr4_3:72001427-72001446 Msa0660880:CDS 50.0%
TATGACAGCCAACCTCCACA+CGG - chr4_3:72001584-72001603 Msa0660880:intron 50.0%
GCGGAGAACATTCAGCTCAT+AGG + chr4_3:72001708-72001727 None:intergenic 50.0%
CTGAATGTTCTCCGCACTAG+AGG - chr4_3:72001713-72001732 Msa0660880:intron 50.0%
CTGTCTCAGCTGTTCAGGAA+GGG - chr4_3:72001771-72001790 Msa0660880:intron 50.0%
TGTCTCAGCTGTTCAGGAAG+GGG - chr4_3:72001772-72001791 Msa0660880:intron 50.0%
TGCAGCTGTTCATGCCATCT+GGG + chr4_3:72001974-72001993 None:intergenic 50.0%
TTGCAGCTGTTCATGCCATC+TGG + chr4_3:72001975-72001994 None:intergenic 50.0%
TTTCAAGGGCCGTGTTACAG+TGG - chr4_3:72002009-72002028 Msa0660880:intron 50.0%
TTCTCCTGCAGAGCAAGAGA+AGG - chr4_3:72002084-72002103 Msa0660880:intron 50.0%
GGAAGGCAGAGAGTGGATAA+CGG + chr4_3:72002159-72002178 None:intergenic 50.0%
GCATATCGCAAAGGCTTGGA+AGG + chr4_3:72002176-72002195 None:intergenic 50.0%
GCTGCTCAAGCATATCGCAA+AGG + chr4_3:72002185-72002204 None:intergenic 50.0%
GATCCATGGTTATAGTCCGC+TGG - chr4_3:72002232-72002251 Msa0660880:five_prime_UTR 50.0%
GTGAGATGCAGCCTGACAAT+CGG - chr4_3:72002312-72002331 Msa0660880:five_prime_UTR 50.0%
ATGCCACACCATTCCGGTTG+CGG - chr4_3:71998899-71998918 Msa0660880:three_prime_UTR 55.0%
ATTCCGCAACCGGAATGGTG+TGG + chr4_3:71998905-71998924 None:intergenic 55.0%
TTCCGGCGAAAACCCGAAGA+GGG + chr4_3:71998957-71998976 None:intergenic 55.0%
ATTCCGGCGAAAACCCGAAG+AGG + chr4_3:71998958-71998977 None:intergenic 55.0%
GCCCATTGTCCCTGCTGAAT+AGG + chr4_3:71999905-71999924 None:intergenic 55.0%
ACGTGCAGGCCAAGAAGTCT+CGG + chr4_3:71999978-71999997 None:intergenic 55.0%
GAAACGACAACAGCACGTGC+AGG + chr4_3:71999992-72000011 None:intergenic 55.0%
GTTCAGACTCCCGAAGAGTG+TGG - chr4_3:72000058-72000077 Msa0660880:intron 55.0%
ATCGGAGAATCACGAGGACC+CGG + chr4_3:72000219-72000238 None:intergenic 55.0%
!! AAAGTGCCGGTTCACCCTAG+AGG - chr4_3:72000983-72001002 Msa0660880:intron 55.0%
TGTATTCCAGCTCCGTGTGG+AGG + chr4_3:72001599-72001618 None:intergenic 55.0%
GGTTGTATTCCAGCTCCGTG+TGG + chr4_3:72001602-72001621 None:intergenic 55.0%
AACCAAATAGCCGGTCCAGC+AGG - chr4_3:72001618-72001637 Msa0660880:intron 55.0%
TTCTTCTCGGCCCTCTAGTG+CGG + chr4_3:72001727-72001746 None:intergenic 55.0%
CCTTCCTGAACAGCTGAGAC+AGG + chr4_3:72001773-72001792 None:intergenic 55.0%
CCTGTCTCAGCTGTTCAGGA+AGG - chr4_3:72001770-72001789 Msa0660880:intron 55.0%
GTCTCAGCTGTTCAGGAAGG+GGG - chr4_3:72001773-72001792 Msa0660880:intron 55.0%
TTCAACCCTCGCAGAGTTGC+CGG - chr4_3:72001901-72001920 Msa0660880:intron 55.0%
!! AGTTGCCGGTTCAGAGCCAA+GGG - chr4_3:72001915-72001934 Msa0660880:intron 55.0%
!! AATGGCCCTTGGCTCTGAAC+CGG + chr4_3:72001923-72001942 None:intergenic 55.0%
CCAGAGACTCAAATGGCCCT+TGG + chr4_3:72001934-72001953 None:intergenic 55.0%
CCAAGGGCCATTTGAGTCTC+TGG - chr4_3:72001931-72001950 Msa0660880:intron 55.0%
GGCATGAACAGCTGCAATGC+TGG - chr4_3:72001978-72001997 Msa0660880:intron 55.0%
AAGGCTTGGAAGGCAGAGAG+TGG + chr4_3:72002166-72002185 None:intergenic 55.0%
!! TTTCACGGCGGTGTTGGTGG+CGG - chr4_3:71998930-71998949 Msa0660880:three_prime_UTR 60.0%
!! TGTTGGTGGCGGACCCTCTT+CGG - chr4_3:71998941-71998960 Msa0660880:three_prime_UTR 60.0%
!! GACCCTCTTCGGGTTTTCGC+CGG - chr4_3:71998952-71998971 Msa0660880:three_prime_UTR 60.0%
! CGAGGAGAGGTGTGGCAAGT+AGG - chr4_3:71999819-71999838 Msa0660880:intron 60.0%
AAGGAAGGGAGGCGGGAGTA+TGG - chr4_3:72000915-72000934 Msa0660880:intron 60.0%
! AGGAAGGGAGGCGGGAGTAT+GGG - chr4_3:72000916-72000935 Msa0660880:intron 60.0%
!! CGACAGCCTCTAGGGTGAAC+CGG + chr4_3:72000992-72001011 None:intergenic 60.0%
CGGTTCACCCTAGAGGCTGT+CGG - chr4_3:72000990-72001009 Msa0660880:intron 60.0%
TTCCAGCTCCGTGTGGAGGT+TGG + chr4_3:72001595-72001614 None:intergenic 60.0%
CTCCTGCTGGACCGGCTATT+TGG + chr4_3:72001623-72001642 None:intergenic 60.0%
GCGTCAGCACCAGAGCCAAA+AGG - chr4_3:72001851-72001870 Msa0660880:intron 60.0%
CTGAACCGGCAACTCTGCGA+GGG + chr4_3:72001909-72001928 None:intergenic 60.0%
TCTGAACCGGCAACTCTGCG+AGG + chr4_3:72001910-72001929 None:intergenic 60.0%
!! GAGTTGCCGGTTCAGAGCCA+AGG - chr4_3:72001914-72001933 Msa0660880:intron 60.0%
!! GTTGGTGGCGGACCCTCTTC+GGG - chr4_3:71998942-71998961 Msa0660880:three_prime_UTR 65.0%
AGCCAACCTCCACACGGAGC+TGG - chr4_3:72001590-72001609 Msa0660880:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 71998815 72002501 71998815 ID=Msa0660880;Name=Msa0660880
chr4_3 mRNA 71998815 72002501 71998815 ID=Msa0660880-mRNA-1;Parent=Msa0660880;Name=Msa0660880-mRNA-1;_AED=0.06;_eAED=0.06;_QI=381|1|1|1|0.75|0.6|5|270|416
chr4_3 exon 71998815 71999763 71998815 ID=Msa0660880-mRNA-1:exon:21596;Parent=Msa0660880-mRNA-1
chr4_3 exon 71999858 71999987 71999858 ID=Msa0660880-mRNA-1:exon:21595;Parent=Msa0660880-mRNA-1
chr4_3 exon 72001013 72001100 72001013 ID=Msa0660880-mRNA-1:exon:21594;Parent=Msa0660880-mRNA-1
chr4_3 exon 72001205 72001596 72001205 ID=Msa0660880-mRNA-1:exon:21593;Parent=Msa0660880-mRNA-1
chr4_3 exon 72002159 72002501 72002159 ID=Msa0660880-mRNA-1:exon:21592;Parent=Msa0660880-mRNA-1
chr4_3 five_prime_UTR 72002159 72002501 72002159 ID=Msa0660880-mRNA-1:five_prime_utr;Parent=Msa0660880-mRNA-1
chr4_3 five_prime_UTR 72001559 72001596 72001559 ID=Msa0660880-mRNA-1:five_prime_utr;Parent=Msa0660880-mRNA-1
chr4_3 CDS 72001205 72001558 72001205 ID=Msa0660880-mRNA-1:cds;Parent=Msa0660880-mRNA-1
chr4_3 CDS 72001013 72001100 72001013 ID=Msa0660880-mRNA-1:cds;Parent=Msa0660880-mRNA-1
chr4_3 CDS 71999858 71999987 71999858 ID=Msa0660880-mRNA-1:cds;Parent=Msa0660880-mRNA-1
chr4_3 CDS 71999085 71999763 71999085 ID=Msa0660880-mRNA-1:cds;Parent=Msa0660880-mRNA-1
chr4_3 three_prime_UTR 71998815 71999084 71998815 ID=Msa0660880-mRNA-1:three_prime_utr;Parent=Msa0660880-mRNA-1
Gene Sequence

>Msa0660880

ATGTCGTTGAGAAGCATAGTACGGGAACTCAAGGAGATGAGGGATGGGATTGGTAATACGTCGAGGAGAGGTGTGGCAAGTAGGCATTCACAGCGTCGGACAAAGTCGCATATTGTTCCTGATATCACTCTAACATCACTTGAACCTATTCAGCAGGGACAATGGGCGAATATACCATCTGAATTGCTACTTGATATAATTCGAAGGGTAGAAGAGACCGAGACTTCTTGGCCTGCACGTGCTGTTGTCGTTTCTTGTGCTTCTGTGTGTAAATCATGGAGGGCCGTTACACAAGAGATTGTTCAGACTCCCGAAGAGTGTGGAAGATTGACGTTTCCTATTTCGTTAAAGCAGCCGGGTCCTCGTGATTCTCCGATACAGTGCTTCATCAGGAGGGACAGAGAAACTTCTGCATATCTATTGTACTATGGACTGGTGCCATCGGAAAATGAGACTGATAAGCTGTTATTAGCTGCCAAAAAGATAAGGAGGGCAACCGGCACAGACTTCATCATATCTTTGGTTGCTGATGATTTTTCTCGTTCCAGCAATGCGTATGTTGGAAAACTCAGGTCTAACTTTTTGGGAACCAAGTTCACCATATATGACAGCCAACCTCCACACGGAGCTGGAATACAACCAAATAGCCGGTCCAGCAGGAGATTTCATTCTAGGCAGGTGTCTCCAAGAGTTCCAGCGTGTAACTATATTGTTAGCACCATTGCCTATGAGCTGAATGTTCTCCGCACTAGAGGGCCGAGAAGAATGAATTGCATCATGAATTCTATACCTGTCTCAGCTGTTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATTACTGATGAGCATTTTTGTTCTGCGTCAGCACCAGAGCCAAAAGGTAAAGATCCAATTGGAGATTTAAGCAATTCAACCCTCGCAGAGTTGCCGGTTCAGAGCCAAGGGCCATTTGAGTCTCTGGTACTCAAAAACAAGTCTCCCAGATGGCATGAACAGCTGCAATGCTGGTGCCTAAATTTCAAGGGCCGTGTTACAGTGGCTTCAGTTAAGAACTTTCAACTTGTGGCTGCTGTTGAGCCATCTCATAATGTTTCTCCTGCAGAGCAAGAGAAGGTTATCTTGCAGTTTGGAAAGATTGGAAAAGATATATTTACTATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCGATATGCTTGAGCAGCTTTGATACAAAACCAGCATGTGAATGA

Protein sequence

>Msa0660880

MSLRSIVRELKEMRDGIGNTSRRGVASRHSQRRTKSHIVPDITLTSLEPIQQGQWANIPSELLLDIIRRVEETETSWPARAVVVSCASVCKSWRAVTQEIVQTPEECGRLTFPISLKQPGPRDSPIQCFIRRDRETSAYLLYYGLVPSENETDKLLLAAKKIRRATGTDFIISLVADDFSRSSNAYVGKLRSNFLGTKFTIYDSQPPHGAGIQPNSRSSRRFHSRQVSPRVPACNYIVSTIAYELNVLRTRGPRRMNCIMNSIPVSAVQEGGNAPTPTSFPQITDEHFCSASAPEPKGKDPIGDLSNSTLAELPVQSQGPFESLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSHNVSPAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE*