AlfalfaGEDB | Msa0241580

M. sativa cultivar zhongmu-4 / Msa0241580

KEGG: K01187
GO: -
PFAM: PF16863.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241580	XP_024633013.2	95.290	913	42	1	1	912	1	913	0.0	1781

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241580	sp\|O04893\|AGLU_SPIOL	60.488	901	334	8	16	907	13	900	0.0	1122

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241580	A0A396J4F2	95.259	907	42	1	1	906	1	907	0.0	1769

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007230	Msa0241580	0.826514	2.602174e-54	-8.615850e-47
Msa0014790	Msa0241580	0.805194	1.501674e-49	-8.615850e-47
Msa0017420	Msa0241580	0.824878	6.356906e-54	-8.615850e-47
Msa0023180	Msa0241580	0.821429	4.056012e-53	-8.615850e-47
Msa0026120	Msa0241580	0.834000	3.858437e-56	-8.615850e-47
Msa0028050	Msa0241580	0.801959	7.038660e-49	-8.615850e-47
Msa0029020	Msa0241580	-0.800887	1.167311e-48	-8.615850e-47
Msa0030400	Msa0241580	0.812713	3.691854e-51	-8.615850e-47
Msa0044320	Msa0241580	0.817385	3.390045e-52	-8.615850e-47
Msa0050240	Msa0241580	0.803645	3.158350e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241580	MtrunA17_Chr2g0293111	95.259	907	42	1	1	906	1	907	0.0	1769
Msa0241580	MtrunA17_Chr2g0293101	92.763	912	66	0	1	912	1	912	0.0	1739
Msa0241580	MtrunA17_Chr1g0209901	46.002	913	443	13	32	911	28	923	0.0	832
Msa0241580	MtrunA17_Chr5g0423841	45.354	904	452	11	39	911	33	925	0.0	812
Msa0241580	MtrunA17_Chr1g0209911	45.069	943	458	15	16	911	7	936	0.0	809
Msa0241580	MtrunA17_Chr3g0130691	31.341	686	391	20	200	848	217	859	4.71e-87	298
Msa0241580	MtrunA17_Chr5g0409111	31.029	680	393	24	175	838	132	751	1.77e-84	293
Msa0241580	MtrunA17_Chr7g0256191	26.481	287	171	12	506	759	578	857	5.97e-15	79.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0241580	AT5G11720.1	63.330	889	311	8	28	911	23	901	0.0	1150
Msa0241580	AT1G68560.1	46.366	908	439	13	34	911	23	912	0.0	826
Msa0241580	AT3G45940.1	45.515	903	433	12	17	911	1	852	0.0	801
Msa0241580	AT5G63840.1	31.533	685	388	19	200	848	226	865	9.71e-94	317
Msa0241580	AT5G63840.2	31.533	685	388	19	200	848	253	892	1.05e-93	317
Msa0241580	AT3G23640.2	31.307	658	373	19	195	833	83	680	3.59e-90	308
Msa0241580	AT3G23640.1	31.307	658	373	19	195	833	83	680	3.59e-90	308
Msa0241580	AT3G23640.3	32.214	655	363	20	195	830	152	744	5.81e-90	309

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Find 190 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCATCAAATCCTCCT+CGG	0.602708	2_2:-17214017	Msa0241580:CDS
AAAAGACCAATAAGGCATAG+GGG	0.693626	2_2:+17213063	None:intergenic
AAAGAAACACAAACTGGTTA+TGG	0.398538	2_2:-17214097	Msa0241580:CDS
AAATTTCTCATCTTATCTTT+CGG	0.348401	2_2:+17212042	None:intergenic
AACAACCAACAAGGCCTTAG+TGG	0.410719	2_2:-17210984	Msa0241580:CDS
AACAACCAATAGTTCGAATG+AGG	0.573769	2_2:+17209770	None:intergenic
AACCAAATTGAGTTGTGTTG+TGG	0.586329	2_2:+17213563	None:intergenic
AAGAAAAGTGGCCGCGCAAT+TGG	0.399941	2_2:+17210077	None:intergenic
AAGAAAGCACATATTCTTTG+AGG	0.399225	2_2:+17209324	None:intergenic
AAGAAGCAAAACACCATGTG+TGG	0.623596	2_2:+17213228	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACACATCAACACAAACAAAA+TGG	-	chr2_2:17209354-17209373	Msa0241580:exon	30.0%
AAAGAAACACAAACTGGTTA+TGG	-	chr2_2:17209481-17209500	Msa0241580:CDS	30.0%
AGTGTAAAAAGTGATTCAAC+AGG	-	chr2_2:17209517-17209536	Msa0241580:CDS	30.0%
TCTTACTCTTAATTGATCCT+TGG	+	chr2_2:17209840-17209859	None:intergenic	30.0%
GAAATGTTTCAGGGTTTAAA+GGG	+	chr2_2:17210096-17210115	None:intergenic	30.0%
AGAAATGTTTCAGGGTTTAA+AGG	+	chr2_2:17210097-17210116	None:intergenic	30.0%
GTAAGACAACTAGAACTATA+AGG	+	chr2_2:17210584-17210603	None:intergenic	30.0%
AAAACACCAATGACATCTAA+CGG	+	chr2_2:17210896-17210915	None:intergenic	30.0%
AAATTTCTATGCATTAGTCC+AGG	-	chr2_2:17211236-17211255	Msa0241580:CDS	30.0%
AATTTCTATGCATTAGTCCA+GGG	-	chr2_2:17211237-17211256	Msa0241580:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	17209176	17214424	17209176	ID=Msa0241580;Name=Msa0241580
chr2_2	mRNA	17209176	17214424	17209176	ID=Msa0241580-mRNA-1;Parent=Msa0241580;Name=Msa0241580-mRNA-1;_AED=0.09;_eAED=0.09;_QI=160\|1\|1\|1\|0.66\|0.42\|7\|173\|912
chr2_2	exon	17209176	17209258	17209176	ID=Msa0241580-mRNA-1:exon:7106;Parent=Msa0241580-mRNA-1
chr2_2	exon	17209281	17210270	17209281	ID=Msa0241580-mRNA-1:exon:7105;Parent=Msa0241580-mRNA-1
chr2_2	exon	17210760	17211406	17210760	ID=Msa0241580-mRNA-1:exon:7104;Parent=Msa0241580-mRNA-1
chr2_2	exon	17211989	17212219	17211989	ID=Msa0241580-mRNA-1:exon:7103;Parent=Msa0241580-mRNA-1
chr2_2	exon	17213062	17213771	17213062	ID=Msa0241580-mRNA-1:exon:7102;Parent=Msa0241580-mRNA-1
chr2_2	exon	17213977	17214251	17213977	ID=Msa0241580-mRNA-1:exon:7101;Parent=Msa0241580-mRNA-1
chr2_2	exon	17214289	17214424	17214289	ID=Msa0241580-mRNA-1:exon:7100;Parent=Msa0241580-mRNA-1
chr2_2	five_prime_UTR	17214289	17214424	17214289	ID=Msa0241580-mRNA-1:five_prime_utr;Parent=Msa0241580-mRNA-1
chr2_2	five_prime_UTR	17214228	17214251	17214228	ID=Msa0241580-mRNA-1:five_prime_utr;Parent=Msa0241580-mRNA-1
chr2_2	CDS	17213977	17214227	17213977	ID=Msa0241580-mRNA-1:cds;Parent=Msa0241580-mRNA-1
chr2_2	CDS	17213062	17213771	17213062	ID=Msa0241580-mRNA-1:cds;Parent=Msa0241580-mRNA-1
chr2_2	CDS	17211989	17212219	17211989	ID=Msa0241580-mRNA-1:cds;Parent=Msa0241580-mRNA-1
chr2_2	CDS	17210760	17211406	17210760	ID=Msa0241580-mRNA-1:cds;Parent=Msa0241580-mRNA-1
chr2_2	CDS	17209371	17210270	17209371	ID=Msa0241580-mRNA-1:cds;Parent=Msa0241580-mRNA-1
chr2_2	three_prime_UTR	17209281	17209370	17209281	ID=Msa0241580-mRNA-1:three_prime_utr;Parent=Msa0241580-mRNA-1
chr2_2	three_prime_UTR	17209176	17209258	17209176	ID=Msa0241580-mRNA-1:three_prime_utr;Parent=Msa0241580-mRNA-1

Gene Sequence

>Msa0241580

ATGGTTACAAGTCCAATAACTAAAACCAGAAACATTCCACTATCACTACTAGCCTTCTGTCTCAATCTTTGTGTCATCTTATCACAAACTGTTGCAGATTCACCATCAAAAGAAACACAAACTGGTTATGGCTACACAATCATAAGTGTAAAAAGTGATTCAACAGGAAAATCTTTGTCTGCTAGCCTAAAACTCATCAAATCCTCCTCGGTTTTTGGACCCGACATTCCACTTCTCAACCTCAGTGCCAGTTTTGAGACCAAGGATCAATTAAGAGTAAGAATCACTGATTCAAATAATCAAAGATGGGAAATTCCACAAGAAGTGATTCTAAGAGACTCATCATCTTCATCTCTATCTCATCATTTTCGCCACCAAAATTCGCAAAACTCAAAATACATAATTACACATCCAAACTCAGACCTTATCTTCACACTCCACAACACAACTCAATTTGGTTTCACTATCACACGTAAATCCAACAAAGATATACTCTTTAACACTTTACCAGAAGACCCTTTAAACCCTGAAACATTTCTAGTCTTTAAGGAACAGTACTTGCAGCTTTCTTCCTCCCTGCCTTCAAAAAGAGCTTCTCTGTATGGTTTTGGAGAGCATACAAAGAGTTCATTCAAGTTGCAACCAAACCAAACTTTCACTCTTTGGAATGAAGATATTGGTAGTGCTAATGTTGATGTGAATCTTTATGGCTCTCATCCATTTTATTTGGATGTGAGAAAGGGTTCACCTGATGGAAGAGTGAAAAGTGGGACCACACATGGTGTTTTGCTTCTTAATAGTAATGGAATGGATGTTGTTTATAGCGGTGATCGTCTTACTTATAAGGTGATTGGTGGTGTTTTTGATTTGTATGTTTTTGCTGGTTCATCTCCTGAATTGGTTTTGGATCAGTATACTCAGTTCATTGGTAGGCCTGCCCCTATGCCTTATTGGTCTTTTGGTTTTCATCAATGTCGATGGGGATACAAGAATGTAAATGATGTTCAGGGTGTAGTAACCAACTATGCAAAAGCTGGTATACCCCTCGAAGTTATGTGGACAGATATTGATTACATGGATGCATATAAAGATTTCACTCTACATCCTGTTAATTTTCCGAAAGATAAGATGAGAAATTTTGTTGACACCCTTCACAAAAATGGTCAGAAATATGTGCTTATCTTGGATCCAGGTATCAGTGTAAATAACACATATGCAACCTATGTTAGAGGCTTACAAGCTGATGTCTATATAAAGAGAAATGGAGTCAATTATCTAGGAGAAGTTTGGCCAGGACCAGTTTACTATCCTGATTTTCTTAACCCTCATAGCCAAGAATTTTGGGGTGAAGAAATCAAATTATTTAGGGAACTTCTCCCTTTTGATGGTATTTGGCTTGACATGAATGAGTTATCAAATTTCAATACTTCAAATGACACTCCACATTCTAATCTTGACAGCCCTCCGTACAAAATTAACAGTACTGGCGTTCAACGACCAATTAACAATAGAACGGTGCCAGCAACTTCTTTACATTATGGTAATATCACTGAGTATGATTCTCACAATTTGTATGGTCTCTTAGAATCCAAAACAACCAACAAGGCCTTAGTGGAAATAACTGGTAAAAGGCCATTCATTTTGAGTAGATCAACTTTTGTTAGCTCTGGCAAGTATACAGCTCATTGGACAGGAGATAATGCTGCTACATGGAATGATTTAGCATACTCAATCCCATCAATATTGAACTTTGGCATCTTTGGAATTCCAATGGTTGGAGCAGATATATGTGGCTTCTCAGGAAACACAACTGAAGAACTTTGTCGGCGTTGGATCCAGTTAGGGGCCTTTTACCCCTTTGCAAGAGATCATTCAGATAAAAATTCCATCAGGCAAGAGCTTTACCTTTGGGATTCAGTTGCAGCATCAGCTCGAAAAGTGCTCGCCCTTCGTTACCGTCTTCTTCCATATTTCTATACACTAATGTACGCATCAAACACAAAAGGGACACCAATTGCGCGGCCACTTTTCTTTTCATTCCCCGAGGATATCACAACATACGAAATAAACACACAGTTTCTTCTAGGCAAAGGTGTTCTAGTCTCACCTGTGCTACAATCTGGTGCAGTAACTGTCGATGCATACTTTCCTAGAGGAAATTGGTTTGATCTCTTTAATCCCTCAAATTCAGTGAGTGCAGAATCAGGCAAATATGTCACACTTGATGCACCATCTGATCACATAAATGTGCATGTTGGCGAAGGTAACATTTTGGCCTTACAAGGTGAAGCAATGACAACAAAAGCAGCTCGGAACACCTCATTCGAACTATTGGTTGTTTTAAGTGGAAATGGAAATAGTTATGGACAAGTTTATTTGGATGATGGTGAGGCTCTTGATCTAGAAGGAGAGAAAGATCAATGGACACTTGTGAAATTTTATGGTGCACTGTATAATGATAGTGTTTCTGTTACTTCTAATGTTACTAATGGAAAATTTGCTTTGGACCAAAAATGGATCATAGAAAAGGTTACATTCTTGGGGATACCTAATTATGGTAGGTTAAATGGAAATGATTTGGCTGAGAGTGAGTTGAATGTTGTTAGTGGAATGAATTCAATGAGGAAAAGAGTTTTGATCACAAAATTTGATAGGTCTTCTAAGTTTGTTACTGTGGAAGTTTCAAATTTGAAACAGCTTATTGGAGAGCAGTTTGAACTGAAGACTAAAATAAGGTAG

Protein sequence

>Msa0241580

MVTSPITKTRNIPLSLLAFCLNLCVILSQTVADSPSKETQTGYGYTIISVKSDSTGKSLSASLKLIKSSSVFGPDIPLLNLSASFETKDQLRVRITDSNNQRWEIPQEVILRDSSSSSLSHHFRHQNSQNSKYIITHPNSDLIFTLHNTTQFGFTITRKSNKDILFNTLPEDPLNPETFLVFKEQYLQLSSSLPSKRASLYGFGEHTKSSFKLQPNQTFTLWNEDIGSANVDVNLYGSHPFYLDVRKGSPDGRVKSGTTHGVLLLNSNGMDVVYSGDRLTYKVIGGVFDLYVFAGSSPELVLDQYTQFIGRPAPMPYWSFGFHQCRWGYKNVNDVQGVVTNYAKAGIPLEVMWTDIDYMDAYKDFTLHPVNFPKDKMRNFVDTLHKNGQKYVLILDPGISVNNTYATYVRGLQADVYIKRNGVNYLGEVWPGPVYYPDFLNPHSQEFWGEEIKLFRELLPFDGIWLDMNELSNFNTSNDTPHSNLDSPPYKINSTGVQRPINNRTVPATSLHYGNITEYDSHNLYGLLESKTTNKALVEITGKRPFILSRSTFVSSGKYTAHWTGDNAATWNDLAYSIPSILNFGIFGIPMVGADICGFSGNTTEELCRRWIQLGAFYPFARDHSDKNSIRQELYLWDSVAASARKVLALRYRLLPYFYTLMYASNTKGTPIARPLFFSFPEDITTYEINTQFLLGKGVLVSPVLQSGAVTVDAYFPRGNWFDLFNPSNSVSAESGKYVTLDAPSDHINVHVGEGNILALQGEAMTTKAARNTSFELLVVLSGNGNSYGQVYLDDGEALDLEGEKDQWTLVKFYGALYNDSVSVTSNVTNGKFALDQKWIIEKVTFLGIPNYGRLNGNDLAESELNVVSGMNSMRKRVLITKFDRSSKFVTVEVSNLKQLIGEQFELKTKIR*