AlfalfaGEDB | Msa0985040

M. sativa cultivar zhongmu-4 / Msa0985040

KEGG: -
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0985040	XP_024642163.2	87.679	1120	117	1	1	1120	1	1099	0.0	1837

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0985040	sp\|Q6JN46\|EIX2_SOLLC	35.752	1130	577	27	14	1119	16	1020	7.82e-168	525

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0985040	A0A396HEF4	87.679	1120	117	1	1	1120	1	1099	0.0	1837

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005690	Msa0985040	0.816460	5.466714e-52	-8.615850e-47
Msa0006050	Msa0985040	0.805535	1.274051e-49	-8.615850e-47
Msa0006700	Msa0985040	0.803867	2.839525e-49	-8.615850e-47
Msa0008250	Msa0985040	0.811811	5.807348e-51	-8.615850e-47
Msa0009560	Msa0985040	0.806997	6.268424e-50	-8.615850e-47
Msa0011760	Msa0985040	0.839036	2.014520e-57	-8.615850e-47
Msa0014790	Msa0985040	0.852318	4.994137e-61	-8.615850e-47
Msa0014970	Msa0985040	0.807613	4.641108e-50	-8.615850e-47
Msa0017420	Msa0985040	0.840425	8.763854e-58	-8.615850e-47
Msa0021980	Msa0985040	0.877553	5.730161e-69	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0985040	MtrunA17_Chr6g0463251	87.679	1120	117	1	1	1120	1	1099	1837
Msa0985040	MtrunA17_Chr6g0463281	85.714	1120	128	3	1	1120	52	1139	1766
Msa0985040	MtrunA17_Chr6g0463301	86.571	1050	139	1	1	1050	1	1048	1689
Msa0985040	MtrunA17_Chr6g0463291	74.937	790	146	2	331	1120	1	738	1090
Msa0985040	MtrunA17_Chr5g0439461	44.536	1098	564	23	38	1119	37	1105	784
Msa0985040	MtrunA17_Chr5g0439451	40.641	1154	600	23	2	1119	11	1115	740
Msa0985040	MtrunA17_Chr6g0465291	42.771	1162	552	30	37	1105	58	1199	738
Msa0985040	MtrunA17_Chr6g0465231	43.330	1147	521	30	37	1119	38	1119	731
Msa0985040	MtrunA17_Chr6g0464631	41.231	1186	558	28	37	1105	37	1200	722
Msa0985040	MtrunA17_Chr6g0465131	42.082	1124	573	26	37	1119	38	1124	711

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0985040	AT2G34930.1	33.875	738	372	20	379	1039	205	903	3.03e-95	325
Msa0985040	AT2G34930.1	28.242	910	514	26	33	862	28	878	4.95e-57	214
Msa0985040	AT3G11010.2	29.109	1089	569	39	25	1087	25	936	3.06e-79	280
Msa0985040	AT3G11010.1	29.748	1032	538	37	69	1087	16	873	5.08e-77	273
Msa0985040	AT1G58190.2	29.348	1012	551	31	232	1100	33	1023	1.47e-73	265
Msa0985040	AT1G74190.1	28.828	836	434	18	426	1107	136	964	1.60e-71	258
Msa0985040	AT1G74190.1	26.223	1022	557	40	7	907	4	949	4.26e-41	164
Msa0985040	AT1G74190.1	27.866	567	326	18	499	1008	105	645	1.46e-31	134
Msa0985040	AT3G11010.3	28.007	1089	557	39	25	1087	25	912	4.72e-71	256
Msa0985040	AT1G58190.3	30.446	808	414	22	426	1100	142	934	1.15e-70	255

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Find 221 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCATCAACAACAAACT+TGG	0.529626	6_4:-31007761	Msa0985040:CDS
AAAATTACAGCCGATCTTTG+AGG	0.467120	6_4:+31007892	None:intergenic
AAAGAGATTGGATATTTGGT+TGG	0.479311	6_4:-31007097	Msa0985040:CDS
AAAGCTATTAATTTGAAAGG+AGG	0.542388	6_4:+31008117	None:intergenic
AAAGGAGGAACCCAACTAAG+GGG	0.676979	6_4:+31008132	None:intergenic
AAATATAACGGAAATATTGT+CGG	0.513907	6_4:-31009320	Msa0985040:CDS
AAATTTAATGTTGTTAGATG+TGG	0.519574	6_4:-31007530	Msa0985040:CDS
AACCTCAACTCTCTTAAGTT+TGG	0.317929	6_4:+31009035	None:intergenic
AACGTACCTTTATTCTGGAA+AGG	0.531137	6_4:-31007202	Msa0985040:CDS
AACTACGAAATTCTCCGCTC+AGG	0.471536	6_4:+31009102	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGATTGTCTTGCAAAATA+TGG	-	chr6_4:31006370-31006389	Msa0985040:intron	30.0%
AGATTAAGAGTTTGCAAAAC+GGG	+	chr6_4:31006758-31006777	None:intergenic	30.0%
ATTGTTAGAGAAATCAAGGA+TGG	+	chr6_4:31007017-31007036	None:intergenic	30.0%
TAGATAAAGCTCTTGCAATT+TGG	+	chr6_4:31007227-31007246	None:intergenic	30.0%
ACATATTTGAGGAAAGATCA+AGG	+	chr6_4:31007327-31007346	None:intergenic	30.0%
TGATGATCTCAACATATTTG+AGG	+	chr6_4:31007338-31007357	None:intergenic	30.0%
CTATCAAATAACAACTTGAG+TGG	-	chr6_4:31007556-31007575	Msa0985040:CDS	30.0%
GTGCAATAGACACATATTTA+CGG	-	chr6_4:31007612-31007631	Msa0985040:CDS	30.0%
TAGACACATATTTACGGATT+TGG	-	chr6_4:31007618-31007637	Msa0985040:CDS	30.0%
GGATAATGAGTTGTATGATA+AGG	+	chr6_4:31007791-31007810	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	31006002	31009972	31006002	ID=Msa0985040;Name=Msa0985040
chr6_4	mRNA	31006002	31009972	31006002	ID=Msa0985040-mRNA-1;Parent=Msa0985040;Name=Msa0985040-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45\|0\|0.5\|1\|0\|0.5\|2\|167\|1120
chr6_4	exon	31006002	31006168	31006002	ID=Msa0985040-mRNA-1:exon:8347;Parent=Msa0985040-mRNA-1
chr6_4	exon	31006565	31009972	31006565	ID=Msa0985040-mRNA-1:exon:8346;Parent=Msa0985040-mRNA-1
chr6_4	five_prime_UTR	31009928	31009972	31009928	ID=Msa0985040-mRNA-1:five_prime_utr;Parent=Msa0985040-mRNA-1
chr6_4	CDS	31006565	31009927	31006565	ID=Msa0985040-mRNA-1:cds;Parent=Msa0985040-mRNA-1
chr6_4	three_prime_UTR	31006002	31006168	31006002	ID=Msa0985040-mRNA-1:three_prime_utr;Parent=Msa0985040-mRNA-1

Gene Sequence

>Msa0985040

ATGATCGATTATATTCTCAAAATATTTTATGCATTGCAATTGCTTTTATTGCTTACCTCAGGATCCACTCATGAGTTCAAAAATACTACAATTGAAAGTGTTGAATCAAAGTGCATAGAGAGGGAGAAACAAGCACTCCTCAAGTTCAAACAAAGCATCGTTGACGACTCTTACATGCTGTCTACATGGAAGGATGATAACAAAGATGGAGACTGCTGCAAATGGAAAAGAATTGAGTGCAACAATGAAACAGGTCATGTGAAGAAACTTGATCTTCGTGGTGATGATTCACAAATCTTGGTAGGTGCAATTGATTTCACTTCGTTGATTGTCTTGCAAAATATGGAATATTTGGATCTTAGCAAAAATTACTTTTTTGGCAATTATATTTCAGAACAAATAGGCTCACTTACCAAGTTAAAGTATCTCAATTTATCAAATTCTTTAGTTGGTGGGGGGATTCCTTATCAAATTGGAAAACTTCTAGAGCTTGAATATCTAGATCTAAGTGTGATGTTTGTTGGTACGAATGGAGAAATCCCTTCTCAACTCGGGAATCTTACACGTTTACGATATCTCAATCTAAAATATAACGGAAATATTGTCGGAGAAATCCCTTGTCAACTTAGAAATCTCTCTCAACTGCAGTACCTTGATCTTGAAGGAACTTCTCTTTCTGGATCAATCCCTTTTCAACCAGGGAATCTTCCCGTTTTGCAAACTCTTAATCTTGATGTGCATTTTGATCTTACAAATGATAATATAAAATGGTTGTCTACACTCTCTTTGTTAACAAGTCTTTCCCTGAGCGGAGAATTTCGTAGTTTTGTCTCTTTTCACTACTTGCTGAAAACAGTCATGAAGTTTATTCCAAACTTAAGAGAGTTGAGGTTAGTTGATTTTGGTCTTATAGATACTGATGTTGCATCTTTGTTTCATTCTCATTCTAACTTTTCCAATTCTCTTACCATCCTTGATTTCTCTAACAATATGTTGACATCGTCAACATTTCAATTCTTGTCAAATATTAGTCTTAATCTTCAAGAGCTTTGGCTTTCTCAAAATGATATTGTTTTAACATCTCATCTCTATCCAAACTTTCCTTCTCTTGTCATCCTTGACCTCTCAAATAATAATATTTCATCATCCCAATTTCCAGGTATCCGCAGTTTTAGCTCCAAATTGCAAGAGCTTTATCTAACAAATTGCATGCTTACAGATAAAAGTTTTCTTGTGTCATCTACTTCAGTTGTGAACTCTTCATCTTCCTTTCTCATCCTTGATCTTTCCTCAAATATGTTGAGATCATCACAAATATTTTTATGGGCTTTTAACTTTACCACTACTCTTCATAGCCTTTACCTCGACGGTAACTTGTTAGAAGGTCCCATTCCAGATGGATTTGAGAAAGTGATGAATTCTCTTGAATGTCTTTCACTCTCAAAAAACAATTTACAAGGAGATATTCCATCTTTCTTTAGCAACATGTGCACATTGCATACTTTATACCTATCAAATAACAACTTGAGTGGTGAAATTTCTAGCTTCATCAACAAAAATTCAGTGTGCAATAGACACATATTTACGGATTTGGATTTTTCTCATAATAGAATAACGGGCGCGCTACCTGAATGCATCAACTTGCTATCTGAGTTGGAGTATCTATACTTGGAGGGTAATTCTTTGGAAGGTGAAATCAATGATTTACATCTCACCAATTTCTCCAAATTGAAAGTATTATCCTTATCATACAACTCATTATCCCTAAAGTTTCCCCTTAGTTGGGTTCCTCCTTTCAAATTAATAGCTTTGAACTTGGCATCTTGCAAGTTGGGTTCAAGCTTTCCAAGTTGGCTCCAAACACAAAGTTCCATAAGGCAACTTGATATTTCTGATACAGGGCTTAATGATGGCGTACCCGAATGGTTTTGGAACAACTCGCAACATATGCTATTAATGAATATGTCGCACAACAATCTGATCGGTACAATTCCAGATTTTCCATATAAGCTTCCTCAAAGATCGGCTGTAATTTTGAATTCAAATCAATTTGAGGGTGGAGTTCCATCCTTTTTGCTACAAGTTTCAGGTCTTATGCTCTCTGGAAATAAATTTTCACATTTGTTTTCATTTTTATGTGATAAAAAAGCATCAACAACAAACTTGGTCACTCTAGATTTATCAAACAATCAAATCGAGGGACAGCTTCCTAATTGTTGGAATTCTGTAAACACATTATTGTTTCTTGATTTGACAAACAATAAGCTTTGGGGGAAGATTCCACAGTCCATGGGAACCCTTGTTAAATTGGAAGCTTTGGTTTTAAGAAATAATAGTTTGAATGGTGACTTGCCTTCCACTTTGAAGAATTGCAGAAATTTAATGTTGTTAGATGTGGGTGAAAATTTGTTGTCTGGCCCAATTCCAACATGGATAGGAGAAAACATGCAGCAATTGAGAATCTTGAGCATGAAAGGGAATCACTTCGCTGGAAACATTCCTATCCACCTCTGTTATTTAAGGAAGATTCAAGTTTTGGATCTTTCAAGAAATAACTTATCAGAAGGAATTCCAACATGCTTAGAGAATTTTACATCATTGTCTGAAAAGAGCATCAATACTAGTGAAACTGAAAGTCAAATATATTCGACAAGTCAAGGCTACGTTTACATTTATGGTGTAGTTTTCAATGATTATACGTTTAACGTACCTTTATTCTGGAAAGGTATGGAACGTGGGTTCAAGCATCCAGAGATGCGTCTTAAGGGCATTGATCTTTCAAGTAATAACTTAACAGGTGAAATACCAAAAGAGATTGGATATTTGGTTGGATTAGTCTCTTTGAATTTATCAAGAAACAATTTGAGCGGAGAAATCCCATCTGAAATTGGAAATTTAGTTTCACTTGATTTCCTCGACTTGTCAAGAAACCATTTCTTTGGTAAAATTCCTTCCACTCTTTCCAACATCGACCGGCTGGAAATTTTAGACTTGTCAAACAACTCTCTCTCCGGAAGAATCCCTTTTGGCAGACAATTGCAAACCTTAGATCCCTCAGGTTTTGAAGGAAATCTTGATCTTTGTGGTGAACCACTTGAAAAGAAATGTCCTGAAGACGCGACGACAGTAAATCCTCCAGGGTCAGAAATTCATGGTGAAGATGGCAATTCAGTTTTCCATGAAGGATTTTACATGTGCTTGGGGTTAGGCTATTTCACAGGTTTTTGGGGATTATTAGGGCCAATACTACTTTGGAGACCTTGGAGAATTGCTTATATAAGGTTCTTGAACAAGTTGATAGACTATATATATGTATTGGTGGCAGTCAATGTGACAAGGTTCCAAATGTGGCTCAAACAGTAG

Protein sequence

>Msa0985040

MIDYILKIFYALQLLLLLTSGSTHEFKNTTIESVESKCIEREKQALLKFKQSIVDDSYMLSTWKDDNKDGDCCKWKRIECNNETGHVKKLDLRGDDSQILVGAIDFTSLIVLQNMEYLDLSKNYFFGNYISEQIGSLTKLKYLNLSNSLVGGGIPYQIGKLLELEYLDLSVMFVGTNGEIPSQLGNLTRLRYLNLKYNGNIVGEIPCQLRNLSQLQYLDLEGTSLSGSIPFQPGNLPVLQTLNLDVHFDLTNDNIKWLSTLSLLTSLSLSGEFRSFVSFHYLLKTVMKFIPNLRELRLVDFGLIDTDVASLFHSHSNFSNSLTILDFSNNMLTSSTFQFLSNISLNLQELWLSQNDIVLTSHLYPNFPSLVILDLSNNNISSSQFPGIRSFSSKLQELYLTNCMLTDKSFLVSSTSVVNSSSSFLILDLSSNMLRSSQIFLWAFNFTTTLHSLYLDGNLLEGPIPDGFEKVMNSLECLSLSKNNLQGDIPSFFSNMCTLHTLYLSNNNLSGEISSFINKNSVCNRHIFTDLDFSHNRITGALPECINLLSELEYLYLEGNSLEGEINDLHLTNFSKLKVLSLSYNSLSLKFPLSWVPPFKLIALNLASCKLGSSFPSWLQTQSSIRQLDISDTGLNDGVPEWFWNNSQHMLLMNMSHNNLIGTIPDFPYKLPQRSAVILNSNQFEGGVPSFLLQVSGLMLSGNKFSHLFSFLCDKKASTTNLVTLDLSNNQIEGQLPNCWNSVNTLLFLDLTNNKLWGKIPQSMGTLVKLEALVLRNNSLNGDLPSTLKNCRNLMLLDVGENLLSGPIPTWIGENMQQLRILSMKGNHFAGNIPIHLCYLRKIQVLDLSRNNLSEGIPTCLENFTSLSEKSINTSETESQIYSTSQGYVYIYGVVFNDYTFNVPLFWKGMERGFKHPEMRLKGIDLSSNNLTGEIPKEIGYLVGLVSLNLSRNNLSGEIPSEIGNLVSLDFLDLSRNHFFGKIPSTLSNIDRLEILDLSNNSLSGRIPFGRQLQTLDPSGFEGNLDLCGEPLEKKCPEDATTVNPPGSEIHGEDGNSVFHEGFYMCLGLGYFTGFWGLLGPILLWRPWRIAYIRFLNKLIDYIYVLVAVNVTRFQMWLKQ*