Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550380 | XP_003606937.1 | 96.764 | 309 | 10 | 0 | 1 | 309 | 1 | 309 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550380 | sp|O65679|PILR3_ARATH | 63.636 | 308 | 105 | 2 | 2 | 309 | 6 | 306 | 3.67e-144 | 411 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550380 | G7JHC4 | 96.764 | 309 | 10 | 0 | 1 | 309 | 1 | 309 | 0.0 | 613 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0073390 | Msa0550380 | 0.812095 | 5.037678e-51 | -8.615850e-47 |
| Msa0135400 | Msa0550380 | 0.812261 | 4.633098e-51 | -8.615850e-47 |
| Msa0143490 | Msa0550380 | 0.810154 | 1.326965e-50 | -8.615850e-47 |
| Msa0202150 | Msa0550380 | 0.817049 | 4.032945e-52 | -8.615850e-47 |
| Msa0210840 | Msa0550380 | 0.809299 | 2.026846e-50 | -8.615850e-47 |
| Msa0417630 | Msa0550380 | 0.807016 | 6.208516e-50 | -8.615850e-47 |
| Msa0244320 | Msa0550380 | 0.828977 | 6.660679e-55 | -8.615850e-47 |
| Msa0253410 | Msa0550380 | 0.803182 | 3.939095e-49 | -8.615850e-47 |
| Msa0318580 | Msa0550380 | 0.838565 | 2.666446e-57 | -8.615850e-47 |
| Msa0550380 | Msa0792860 | 0.816572 | 5.161040e-52 | -8.615850e-47 |
| Msa0550380 | Msa1040770 | 0.809067 | 2.272715e-50 | -8.615850e-47 |
| Msa0550380 | Msa1075120 | 0.831804 | 1.355881e-55 | -8.615850e-47 |
| Msa0550380 | Msa1214080 | 0.842445 | 2.574656e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550380 | MtrunA17_Chr4g0035121 | 96.764 | 309 | 10 | 0 | 1 | 309 | 1 | 309 | 0.0 | 613 |
| Msa0550380 | MtrunA17_Chr3g0141691 | 49.671 | 304 | 151 | 1 | 3 | 306 | 4 | 305 | 3.10e-107 | 314 |
| Msa0550380 | MtrunA17_Chr3g0141681 | 49.837 | 307 | 150 | 2 | 2 | 306 | 3 | 307 | 4.38e-105 | 309 |
| Msa0550380 | MtrunA17_Chr5g0404471 | 49.020 | 306 | 154 | 1 | 2 | 307 | 4 | 307 | 7.61e-104 | 306 |
| Msa0550380 | MtrunA17_Chr3g0144701 | 48.185 | 303 | 155 | 1 | 4 | 306 | 9 | 309 | 1.18e-102 | 303 |
| Msa0550380 | MtrunA17_Chr4g0035131 | 45.016 | 311 | 165 | 3 | 1 | 309 | 42 | 348 | 5.90e-94 | 283 |
| Msa0550380 | MtrunA17_Chr4g0035111 | 41.584 | 303 | 175 | 1 | 4 | 306 | 7 | 307 | 1.23e-86 | 263 |
| Msa0550380 | MtrunA17_Chr5g0404511 | 39.365 | 315 | 177 | 4 | 3 | 306 | 4 | 315 | 4.47e-79 | 243 |
| Msa0550380 | MtrunA17_Chr5g0404481 | 39.365 | 315 | 177 | 4 | 3 | 306 | 4 | 315 | 4.56e-79 | 243 |
| Msa0550380 | MtrunA17_Chr5g0409651 | 40.575 | 313 | 178 | 3 | 1 | 308 | 1 | 310 | 3.08e-74 | 230 |
| Msa0550380 | MtrunA17_Chr5g0409641 | 40.645 | 310 | 176 | 3 | 1 | 305 | 1 | 307 | 1.50e-73 | 229 |
| Msa0550380 | MtrunA17_Chr8g0369391 | 38.854 | 314 | 185 | 3 | 1 | 309 | 1 | 312 | 9.75e-71 | 221 |
| Msa0550380 | MtrunA17_Chr3g0078901 | 33.766 | 308 | 196 | 5 | 3 | 309 | 5 | 305 | 9.39e-58 | 188 |
| Msa0550380 | MtrunA17_Chr3g0078831 | 33.117 | 308 | 198 | 5 | 3 | 309 | 5 | 305 | 1.35e-55 | 182 |
| Msa0550380 | MtrunA17_Chr1g0198771 | 32.039 | 309 | 205 | 3 | 1 | 307 | 11 | 316 | 3.30e-54 | 180 |
| Msa0550380 | MtrunA17_Chr3g0078941 | 32.227 | 211 | 136 | 4 | 99 | 309 | 8 | 211 | 2.66e-35 | 127 |
| Msa0550380 | MtrunA17_Chr3g0078951 | 36.449 | 107 | 60 | 4 | 2 | 105 | 4 | 105 | 3.20e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0550380 | AT4G34540.1 | 63.636 | 308 | 105 | 2 | 2 | 309 | 6 | 306 | 3.73e-145 | 411 |
| Msa0550380 | AT1G75290.1 | 49.020 | 306 | 152 | 2 | 2 | 305 | 4 | 307 | 8.41e-105 | 309 |
| Msa0550380 | AT4G39230.1 | 47.883 | 307 | 158 | 1 | 3 | 309 | 4 | 308 | 1.05e-104 | 308 |
| Msa0550380 | AT1G75280.1 | 49.673 | 306 | 149 | 3 | 2 | 305 | 4 | 306 | 3.57e-104 | 307 |
| Msa0550380 | AT1G75290.2 | 49.020 | 306 | 152 | 2 | 2 | 305 | 31 | 334 | 4.18e-104 | 308 |
| Msa0550380 | AT1G75300.1 | 45.000 | 320 | 155 | 4 | 2 | 305 | 4 | 318 | 6.27e-94 | 281 |
| Msa0550380 | AT1G19540.1 | 46.254 | 307 | 159 | 3 | 4 | 306 | 3 | 307 | 1.57e-91 | 275 |
| Msa0550380 | AT1G19540.2 | 48.047 | 256 | 127 | 3 | 4 | 255 | 3 | 256 | 3.91e-75 | 231 |
| Msa0550380 | AT1G32100.1 | 36.422 | 313 | 191 | 3 | 2 | 309 | 8 | 317 | 3.36e-62 | 200 |
| Msa0550380 | AT4G13660.1 | 36.538 | 312 | 184 | 4 | 2 | 305 | 8 | 313 | 3.87e-61 | 197 |
| Msa0550380 | AT4G13660.2 | 36.538 | 312 | 184 | 4 | 2 | 305 | 8 | 313 | 3.87e-61 | 197 |
Find 93 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTGCCTAATTTCAATTT+TGG | 0.127382 | 4_1:-45806249 | None:intergenic |
| GAGAAAGACATTGAAGTTTA+TGG | 0.194364 | 4_1:-45804774 | None:intergenic |
| ACCTATCAAACATTTATCTA+TGG | 0.220800 | 4_1:-45804585 | None:intergenic |
| TTGCAATATAGTAATATAAT+AGG | 0.221482 | 4_1:+45807876 | Msa0550380:three_prime_UTR |
| AATTAACAATGCTTGTTCTT+TGG | 0.236018 | 4_1:+45807819 | Msa0550380:three_prime_UTR |
| AGATTCATCCCATCTGAATT+TGG | 0.243941 | 4_1:+45806167 | Msa0550380:CDS |
| GAGATATGGGAAACTAAAAT+AGG | 0.244528 | 4_1:+45806614 | Msa0550380:CDS |
| TGAGACTTGATTCTGCTAAA+TGG | 0.268346 | 4_1:-45804690 | None:intergenic |
| AAGCACGTTTGCACATTCTT+AGG | 0.294342 | 4_1:-45807788 | None:intergenic |
| TTCAAAGAACAAACATTTCC+TGG | 0.311587 | 4_1:-45806581 | None:intergenic |
| ATGCACCCAAAATTGAAATT+AGG | 0.315985 | 4_1:+45806243 | Msa0550380:CDS |
| AGGGACGAAGTCACAATATT+TGG | 0.316027 | 4_1:+45806371 | Msa0550380:CDS |
| AGAAAGACATTGAAGTTTAT+GGG | 0.319968 | 4_1:-45804773 | None:intergenic |
| TATATATTCTGCTTTCATAA+AGG | 0.325754 | 4_1:+45807553 | Msa0550380:CDS |
| ATATATTCTGCTTTCATAAA+GGG | 0.332310 | 4_1:+45807554 | Msa0550380:CDS |
| TTGATCAACGTTAGATTGAA+TGG | 0.333530 | 4_1:+45804621 | Msa0550380:exon |
| TTGTAGACTTTGATTTGTTT+AGG | 0.338459 | 4_1:+45807680 | Msa0550380:exon |
| AAAAGCAAGATATTGATAAT+TGG | 0.354025 | 4_1:+45804646 | Msa0550380:CDS |
| AACAAATCAAAGTCTACAAA+TGG | 0.375508 | 4_1:-45807676 | None:intergenic |
| TGAATGAGCTGGTTGAGATA+TGG | 0.375861 | 4_1:+45806600 | Msa0550380:CDS |
| TGAAGTTTATGGGATTTGAT+TGG | 0.388364 | 4_1:-45804763 | None:intergenic |
| TTGCTGGTGTATGGTGTTTG+TGG | 0.388829 | 4_1:-45808134 | None:intergenic |
| GATTTGTTTAGGAATATGTT+TGG | 0.403304 | 4_1:+45807691 | Msa0550380:three_prime_UTR |
| TTTGATATTGAGTCATCATA+TGG | 0.411803 | 4_1:+45807590 | Msa0550380:CDS |
| CTAGGAGGAGCTTTCAATCC+TGG | 0.420339 | 4_1:-45806350 | None:intergenic |
| TGCAATATAGTAATATAATA+GGG | 0.420739 | 4_1:+45807877 | Msa0550380:three_prime_UTR |
| GAATGAGCTGGTTGAGATAT+GGG | 0.421530 | 4_1:+45806601 | Msa0550380:CDS |
| GGGATCGTCAACCGCATTGA+TGG | 0.428160 | 4_1:-45806525 | None:intergenic |
| CCCATAGATAAATGTTTGAT+AGG | 0.432306 | 4_1:+45804584 | Msa0550380:five_prime_UTR |
| CTTCCTTCTCTTGTTCAACC+AGG | 0.436686 | 4_1:+45806332 | Msa0550380:CDS |
| CAAACAACTTGGTTCTATCA+AGG | 0.437457 | 4_1:+45805016 | Msa0550380:CDS |
| AATATAAAATAAACAGTGTC+AGG | 0.439379 | 4_1:-45807994 | None:intergenic |
| CAAAACTTTATTCAAAGTGC+GGG | 0.443000 | 4_1:-45806546 | None:intergenic |
| AATTGTAGGTGTATTTATGC+AGG | 0.443217 | 4_1:+45806481 | Msa0550380:intron |
| ATAAATGTTTGATAGGTAGC+TGG | 0.443283 | 4_1:+45804591 | Msa0550380:five_prime_UTR |
| TACAGCAAAAGCTACTCATC+CGG | 0.449081 | 4_1:+45804988 | Msa0550380:CDS |
| CAGGATTGAAAGCTCCTCCT+AGG | 0.466026 | 4_1:+45806351 | Msa0550380:CDS |
| AAAGCATCTCAAAGTTCGTT+GGG | 0.466321 | 4_1:-45807529 | None:intergenic |
| CTTCAATGTCTTTCTCATGC+TGG | 0.474364 | 4_1:+45804781 | Msa0550380:CDS |
| ATATTGATAATTGGTGCAAC+GGG | 0.477148 | 4_1:+45804655 | Msa0550380:CDS |
| CTCTAACAAGAGCAAATGTT+GGG | 0.483286 | 4_1:-45804723 | None:intergenic |
| ATTGGTGCAACGGGAAGTCT+TGG | 0.488303 | 4_1:+45804664 | Msa0550380:CDS |
| AGATATGGGAAACTAAAATA+GGG | 0.489971 | 4_1:+45806615 | Msa0550380:CDS |
| AAAAGCATCTCAAAGTTCGT+TGG | 0.496084 | 4_1:-45807530 | None:intergenic |
| TCTCTAACAAGAGCAAATGT+TGG | 0.501646 | 4_1:-45804724 | None:intergenic |
| TTTGGTGACGGCAATACAAA+AGG | 0.507552 | 4_1:+45806389 | Msa0550380:CDS |
| TAAATGTTTGATAGGTAGCT+GGG | 0.511131 | 4_1:+45804592 | Msa0550380:five_prime_UTR |
| TCAAACATTTATCTATGGGA+TGG | 0.514191 | 4_1:-45804580 | None:intergenic |
| ACAATGCTTGTTCTTTGGCA+AGG | 0.517723 | 4_1:+45807824 | Msa0550380:three_prime_UTR |
| GATATTGATAATTGGTGCAA+CGG | 0.523861 | 4_1:+45804654 | Msa0550380:CDS |
| CCTATCAAACATTTATCTAT+GGG | 0.525088 | 4_1:-45804584 | None:intergenic |
| ACAAATCAAAGTCTACAAAT+GGG | 0.528728 | 4_1:-45807675 | None:intergenic |
| AATCCTGGTTGAACAAGAGA+AGG | 0.535054 | 4_1:-45806335 | None:intergenic |
| AACCAAGTTGTTTGATAACC+CGG | 0.535224 | 4_1:-45805007 | None:intergenic |
| AATTGAAATTAGGCAACTTG+TGG | 0.541470 | 4_1:+45806253 | Msa0550380:CDS |
| GTTACATCATTACATTACAT+AGG | 0.541535 | 4_1:+45804527 | Msa0550380:five_prime_UTR |
| AAGTTCACATACTTTAGCCT+TGG | 0.542851 | 4_1:-45806201 | None:intergenic |
| CAAACATTTATCTATGGGAT+GGG | 0.549590 | 4_1:-45804579 | None:intergenic |
| ATCCGGGTTATCAAACAACT+TGG | 0.550903 | 4_1:+45805005 | Msa0550380:CDS |
| TGTTTGTTCTTTGAATGAGC+TGG | 0.551475 | 4_1:+45806589 | Msa0550380:CDS |
| GGATCTGAGCCAAATTCAGA+TGG | 0.556972 | 4_1:-45806176 | None:intergenic |
| GGTAGAGGAAATGAAATTGT+TGG | 0.557605 | 4_1:-45808058 | None:intergenic |
| GGCTAAAGTATGTGAACTTG+AGG | 0.561289 | 4_1:+45806205 | Msa0550380:CDS |
| AATATTGTGACTTCGTCCCT+AGG | 0.562347 | 4_1:-45806368 | None:intergenic |
| GAGTCATCATATGGTGTGAA+TGG | 0.563850 | 4_1:+45807599 | Msa0550380:CDS |
| TCACATACTTTAGCCTTGGT+AGG | 0.568317 | 4_1:-45806197 | None:intergenic |
| TATGTAATGTAATGATGTAA+CGG | 0.573101 | 4_1:-45804525 | None:intergenic |
| CAGAGAATGATACTTTGAGA+AGG | 0.573309 | 4_1:-45804810 | None:intergenic |
| GCTTGTTCTTTGGCAAGGAG+TGG | 0.573531 | 4_1:+45807829 | Msa0550380:three_prime_UTR |
| TTGCAGGAGATGATAGTATG+TGG | 0.574762 | 4_1:-45806290 | None:intergenic |
| ACAAAACTTTATTCAAAGTG+CGG | 0.576912 | 4_1:-45806547 | None:intergenic |
| AGGATTGAAAGCTCCTCCTA+GGG | 0.588865 | 4_1:+45806352 | Msa0550380:CDS |
| ACAGCAAAAGCTACTCATCC+GGG | 0.590053 | 4_1:+45804989 | Msa0550380:CDS |
| GAGCTGCTTGAGAAAATCAA+AGG | 0.590625 | 4_1:+45806671 | Msa0550380:CDS |
| AGGAAATGAAATTGTTGGTG+TGG | 0.592290 | 4_1:-45808053 | None:intergenic |
| ATATAATAGGGAATTCTGCT+AGG | 0.596697 | 4_1:+45807889 | Msa0550380:three_prime_UTR |
| AAAGTATGTGAACTTGAGGA+TGG | 0.599062 | 4_1:+45806209 | Msa0550380:CDS |
| GTGTACATTCGCATGAGAGA+AGG | 0.600246 | 4_1:+45804487 | None:intergenic |
| AGGCAACTTGTGGAAGCTGA+AGG | 0.602341 | 4_1:+45806263 | Msa0550380:CDS |
| AGAGAATGATACTTTGAGAA+GGG | 0.615697 | 4_1:-45804809 | None:intergenic |
| AGATGAAGCAAGCCTTGTTG+AGG | 0.621736 | 4_1:+45804914 | Msa0550380:CDS |
| AAATATAAAGATAATAACAT+CGG | 0.630368 | 4_1:-45807755 | None:intergenic |
| ATTGTGGAATATCTCAGCTG+TGG | 0.632032 | 4_1:-45807635 | None:intergenic |
| AAAACTTTATTCAAAGTGCG+GGG | 0.639558 | 4_1:-45806545 | None:intergenic |
| CTAACTTCACAGCCTCAACA+AGG | 0.643328 | 4_1:-45804926 | None:intergenic |
| GAAGTCACAATATTTGGTGA+CGG | 0.659254 | 4_1:+45806377 | Msa0550380:CDS |
| GATCTGAGCCAAATTCAGAT+GGG | 0.661245 | 4_1:-45806175 | None:intergenic |
| AAATAGGGAAGAAACTTGAG+AGG | 0.666892 | 4_1:+45806630 | Msa0550380:CDS |
| ATTGTGACTTCGTCCCTAGG+AGG | 0.671960 | 4_1:-45806365 | None:intergenic |
| GTGTCAGGAAACAAAGACAG+TGG | 0.674358 | 4_1:-45807979 | None:intergenic |
| AAAGAACAAACATTTCCTGG+AGG | 0.691831 | 4_1:-45806578 | None:intergenic |
| TGCTGCTTTCACCATCAATG+CGG | 0.712003 | 4_1:+45806514 | Msa0550380:CDS |
| ATTTGGCTCAGATCCTACCA+AGG | 0.716779 | 4_1:+45806184 | Msa0550380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCTATAACAATATATAAA+AGG | - | chr4_1:45805436-45805455 | None:intergenic | 10.0% |
| !! | ATATATTGTTATAGATATTA+TGG | + | chr4_1:45805439-45805458 | Msa0550380:intron | 10.0% |
| !!! | TTATCATATTTTTATAGTTT+AGG | - | chr4_1:45805767-45805786 | None:intergenic | 10.0% |
| !!! | TTATCATATTTTTATAGTTT+AGG | - | chr4_1:45805767-45805786 | None:intergenic | 10.0% |
| !! | ACTAGAATATTAATTAATTT+AGG | + | chr4_1:45805898-45805917 | Msa0550380:intron | 10.0% |
| !! | CTAGAATATTAATTAATTTA+GGG | + | chr4_1:45805899-45805918 | Msa0550380:intron | 10.0% |
| !! | TCAATTTATAGAAATATAAT+AGG | - | chr4_1:45805960-45805979 | None:intergenic | 10.0% |
| !!! | TTAATAAGAATTGAATTTTT+AGG | + | chr4_1:45807005-45807024 | Msa0550380:intron | 10.0% |
| !! | AAATATAAAGATAATAACAT+CGG | - | chr4_1:45807758-45807777 | None:intergenic | 10.0% |
| !!! | CTTTTGTTTATAATAAATTG+AGG | + | chr4_1:45806026-45806045 | Msa0550380:intron | 15.0% |
| !!! | AACAACTATAATTTTTAAGA+AGG | + | chr4_1:45806799-45806818 | Msa0550380:intron | 15.0% |
| !! | TATCTATAAGCTTATATATA+AGG | + | chr4_1:45807288-45807307 | Msa0550380:intron | 15.0% |
| !! | ATCTATAAGCTTATATATAA+GGG | + | chr4_1:45807289-45807308 | Msa0550380:intron | 15.0% |
| !! | TTGCAATATAGTAATATAAT+AGG | + | chr4_1:45807876-45807895 | Msa0550380:three_prime_UTR | 15.0% |
| !! | TGCAATATAGTAATATAATA+GGG | + | chr4_1:45807877-45807896 | Msa0550380:three_prime_UTR | 15.0% |
| !!! | AAATATTGAGATTTTTAAAG+TGG | - | chr4_1:45808082-45808101 | None:intergenic | 15.0% |
| !! | TATGTAATGTAATGATGTAA+CGG | - | chr4_1:45804528-45804547 | None:intergenic | 20.0% |
| !!! | AAAAGCAAGATATTGATAAT+TGG | + | chr4_1:45804646-45804665 | Msa0550380:CDS | 20.0% |
| !! | AAAAACCATAAGAATTTGAA+GGG | - | chr4_1:45805062-45805081 | None:intergenic | 20.0% |
| !! | TAAAAACCATAAGAATTTGA+AGG | - | chr4_1:45805063-45805082 | None:intergenic | 20.0% |
| !! | AATAAAAAATTCAGCTCAAA+AGG | + | chr4_1:45805404-45805423 | Msa0550380:intron | 20.0% |
| !! | ATAAAAAATTCAGCTCAAAA+GGG | + | chr4_1:45805405-45805424 | Msa0550380:intron | 20.0% |
| !! | ATATATGTGATATATCCTAA+TGG | - | chr4_1:45805689-45805708 | None:intergenic | 20.0% |
| !! | CTATAAAAATATGATAAGTC+AGG | + | chr4_1:45805770-45805789 | Msa0550380:intron | 20.0% |
| !! | CTATAAAAATATGATAAGTC+AGG | + | chr4_1:45805770-45805789 | Msa0550380:intron | 20.0% |
| !!! | ATTCTAGTTCTTATCTTTAA+AGG | - | chr4_1:45805886-45805905 | None:intergenic | 20.0% |
| !!! | ATTTGTTTGTTAACATTTGT+TGG | + | chr4_1:45806138-45806157 | Msa0550380:intron | 20.0% |
| !!! | AACTATAATTTTTAAGAAGG+CGG | + | chr4_1:45806802-45806821 | Msa0550380:intron | 20.0% |
| !! | TTCAATAAAAATAAGGGAAA+AGG | - | chr4_1:45807041-45807060 | None:intergenic | 20.0% |
| !!! | TTTTGAAAATATTGAATTGC+AGG | - | chr4_1:45807241-45807260 | None:intergenic | 20.0% |
| !! | ATATGTTCAGAATAATTCAT+AGG | - | chr4_1:45807382-45807401 | None:intergenic | 20.0% |
| !! | TATATATTCTGCTTTCATAA+AGG | + | chr4_1:45807553-45807572 | Msa0550380:CDS | 20.0% |
| !! | ATATATTCTGCTTTCATAAA+GGG | + | chr4_1:45807554-45807573 | Msa0550380:CDS | 20.0% |
| !! | AATATAAAATAAACAGTGTC+AGG | - | chr4_1:45807997-45808016 | None:intergenic | 20.0% |
| ! | GTTACATCATTACATTACAT+AGG | + | chr4_1:45804527-45804546 | Msa0550380:five_prime_UTR | 25.0% |
| ! | CCTATCAAACATTTATCTAT+GGG | - | chr4_1:45804587-45804606 | None:intergenic | 25.0% |
| ! | ACCTATCAAACATTTATCTA+TGG | - | chr4_1:45804588-45804607 | None:intergenic | 25.0% |
| ! | AGAAAGACATTGAAGTTTAT+GGG | - | chr4_1:45804776-45804795 | None:intergenic | 25.0% |
| !!! | TGGTTGATATTTTATGTACA+GGG | + | chr4_1:45804882-45804901 | Msa0550380:intron | 25.0% |
| ! | TTTAACCCTTCAAATTCTTA+TGG | + | chr4_1:45805054-45805073 | Msa0550380:intron | 25.0% |
| !!! | ATATACTTTTTCAGCTAACA+AGG | - | chr4_1:45805116-45805135 | None:intergenic | 25.0% |
| ! | GTTAGAATATGTTGTTCATT+AGG | + | chr4_1:45805141-45805160 | Msa0550380:intron | 25.0% |
| !! | CTTATCTTTAAAGGAATTGA+TGG | - | chr4_1:45805877-45805896 | None:intergenic | 25.0% |
| ! | TAATTTAGGGACTAAGTTTA+TGG | + | chr4_1:45805912-45805931 | Msa0550380:intron | 25.0% |
| ! | TCTATAAATTGAAGAGTGAT+AGG | + | chr4_1:45805968-45805987 | Msa0550380:intron | 25.0% |
| ! | TGTGGAATATACTATCAATT+TGG | - | chr4_1:45806000-45806019 | None:intergenic | 25.0% |
| ! | GGATTATTAAATGTTCATGT+AGG | - | chr4_1:45806067-45806086 | None:intergenic | 25.0% |
| ! | TGTGCTTTATGTATTCAAAT+AGG | - | chr4_1:45806088-45806107 | None:intergenic | 25.0% |
| !! | AGTTGCCTAATTTCAATTTT+GGG | - | chr4_1:45806251-45806270 | None:intergenic | 25.0% |
| !! | AAGTTGCCTAATTTCAATTT+TGG | - | chr4_1:45806252-45806271 | None:intergenic | 25.0% |
| !! | AATTTTCATAAAGAAGTTGC+AGG | - | chr4_1:45806309-45806328 | None:intergenic | 25.0% |
| !!! | AAGCTCTGGAAAAATAAAAT+TGG | - | chr4_1:45806440-45806459 | None:intergenic | 25.0% |
| ! | ACAAAACTTTATTCAAAGTG+CGG | - | chr4_1:45806550-45806569 | None:intergenic | 25.0% |
| ! | AGATATGGGAAACTAAAATA+GGG | + | chr4_1:45806615-45806634 | Msa0550380:CDS | 25.0% |
| !!! | ACTATAATTTTTAAGAAGGC+GGG | + | chr4_1:45806803-45806822 | Msa0550380:intron | 25.0% |
| !!! | ATTTTTTAAGTGTCAAACCA+AGG | - | chr4_1:45806865-45806884 | None:intergenic | 25.0% |
| !!! | TTCCCTTATTTTTATTGAAC+TGG | + | chr4_1:45807042-45807061 | Msa0550380:intron | 25.0% |
| ! | TGCCAGTTCAATAAAAATAA+GGG | - | chr4_1:45807047-45807066 | None:intergenic | 25.0% |
| !!! | AAATTTTAAGTACCAATCCA+AGG | + | chr4_1:45807159-45807178 | Msa0550380:intron | 25.0% |
| ! | TAAAAAGGCAAATTATACAG+TGG | - | chr4_1:45807206-45807225 | None:intergenic | 25.0% |
| ! | AGGAACAAAACTACTTAAAA+AGG | - | chr4_1:45807221-45807240 | None:intergenic | 25.0% |
| ! | TTAAATCAGAATGACTTTAC+AGG | - | chr4_1:45807326-45807345 | None:intergenic | 25.0% |
| !! | TTGGATTGATTTCTACATAA+TGG | - | chr4_1:45807353-45807372 | None:intergenic | 25.0% |
| !!! | AATAATTCATAGGCTTTGTT+TGG | - | chr4_1:45807372-45807391 | None:intergenic | 25.0% |
| ! | TTATCTGTTAAGACTTTAAG+AGG | + | chr4_1:45807413-45807432 | Msa0550380:intron | 25.0% |
| !!! | ACATACTGTCTGTATTTTTT+TGG | + | chr4_1:45807486-45807505 | Msa0550380:intron | 25.0% |
| !!! | CATACTGTCTGTATTTTTTT+GGG | + | chr4_1:45807487-45807506 | Msa0550380:intron | 25.0% |
| !!! | ATACTGTCTGTATTTTTTTG+GGG | + | chr4_1:45807488-45807507 | Msa0550380:intron | 25.0% |
| ! | TTTGATATTGAGTCATCATA+TGG | + | chr4_1:45807590-45807609 | Msa0550380:CDS | 25.0% |
| ! | ACAAATCAAAGTCTACAAAT+GGG | - | chr4_1:45807678-45807697 | None:intergenic | 25.0% |
| ! | AACAAATCAAAGTCTACAAA+TGG | - | chr4_1:45807679-45807698 | None:intergenic | 25.0% |
| !!! | TTGTAGACTTTGATTTGTTT+AGG | + | chr4_1:45807680-45807699 | Msa0550380:exon | 25.0% |
| !! | GATTTGTTTAGGAATATGTT+TGG | + | chr4_1:45807691-45807710 | Msa0550380:three_prime_UTR | 25.0% |
| ! | AGATAATAACATCGGAAAAA+TGG | - | chr4_1:45807750-45807769 | None:intergenic | 25.0% |
| ! | AATTAACAATGCTTGTTCTT+TGG | + | chr4_1:45807819-45807838 | Msa0550380:three_prime_UTR | 25.0% |
| CAAACATTTATCTATGGGAT+GGG | - | chr4_1:45804582-45804601 | None:intergenic | 30.0% | |
| TCAAACATTTATCTATGGGA+TGG | - | chr4_1:45804583-45804602 | None:intergenic | 30.0% | |
| CCCATAGATAAATGTTTGAT+AGG | + | chr4_1:45804584-45804603 | Msa0550380:five_prime_UTR | 30.0% | |
| ATAAATGTTTGATAGGTAGC+TGG | + | chr4_1:45804591-45804610 | Msa0550380:five_prime_UTR | 30.0% | |
| TAAATGTTTGATAGGTAGCT+GGG | + | chr4_1:45804592-45804611 | Msa0550380:five_prime_UTR | 30.0% | |
| TTGATCAACGTTAGATTGAA+TGG | + | chr4_1:45804621-45804640 | Msa0550380:exon | 30.0% | |
| ! | GATATTGATAATTGGTGCAA+CGG | + | chr4_1:45804654-45804673 | Msa0550380:CDS | 30.0% |
| ! | ATATTGATAATTGGTGCAAC+GGG | + | chr4_1:45804655-45804674 | Msa0550380:CDS | 30.0% |
| TGAAGTTTATGGGATTTGAT+TGG | - | chr4_1:45804766-45804785 | None:intergenic | 30.0% | |
| GAGAAAGACATTGAAGTTTA+TGG | - | chr4_1:45804777-45804796 | None:intergenic | 30.0% | |
| ! | AGAGAATGATACTTTGAGAA+GGG | - | chr4_1:45804812-45804831 | None:intergenic | 30.0% |
| !! | GTAGTCTTATCTAATTCTTG+TGG | + | chr4_1:45804862-45804881 | Msa0550380:intron | 30.0% |
| !! | GTGGTTGATATTTTATGTAC+AGG | + | chr4_1:45804881-45804900 | Msa0550380:intron | 30.0% |
| CAAATAACAAGTATCAGCTA+TGG | - | chr4_1:45805189-45805208 | None:intergenic | 30.0% | |
| !! | GCTGATACTTGTTATTTGTT+AGG | + | chr4_1:45805191-45805210 | Msa0550380:intron | 30.0% |
| ! | TCCGAATTTTTACTTTCGTT+CGG | + | chr4_1:45805217-45805236 | Msa0550380:intron | 30.0% |
| CTGTACAAATGCTATATTGT+TGG | - | chr4_1:45805355-45805374 | None:intergenic | 30.0% | |
| TAATCACTACCAAATGGTAT+CGG | - | chr4_1:45805476-45805495 | None:intergenic | 30.0% | |
| GAAGATTAATCACTACCAAA+TGG | - | chr4_1:45805482-45805501 | None:intergenic | 30.0% | |
| AAACCATTACCACTTGTTTA+AGG | + | chr4_1:45805579-45805598 | Msa0550380:intron | 30.0% | |
| TGTGATATATCCTAATGGAA+GGG | - | chr4_1:45805684-45805703 | None:intergenic | 30.0% | |
| ATGTGATATATCCTAATGGA+AGG | - | chr4_1:45805685-45805704 | None:intergenic | 30.0% | |
| AGAGAAAGAACGATAGTTTA+AGG | - | chr4_1:45805735-45805754 | None:intergenic | 30.0% | |
| TATGATAAGTCAGGACTAAT+CGG | + | chr4_1:45805779-45805798 | Msa0550380:intron | 30.0% | |
| TATGATAAGTCAGGACTAAT+CGG | + | chr4_1:45805779-45805798 | Msa0550380:intron | 30.0% | |
| TTATGGACCGAAAATAGTTT+AGG | + | chr4_1:45805929-45805948 | Msa0550380:intron | 30.0% | |
| TATGGACCGAAAATAGTTTA+GGG | + | chr4_1:45805930-45805949 | Msa0550380:intron | 30.0% | |
| ! | TATAAACAAAAGCACACATG+TGG | - | chr4_1:45806018-45806037 | None:intergenic | 30.0% |
| ATGCACCCAAAATTGAAATT+AGG | + | chr4_1:45806243-45806262 | Msa0550380:CDS | 30.0% | |
| AATTGAAATTAGGCAACTTG+TGG | + | chr4_1:45806253-45806272 | Msa0550380:CDS | 30.0% | |
| AATCATGAATAAGTAAGCTC+TGG | - | chr4_1:45806454-45806473 | None:intergenic | 30.0% | |
| AGAGCTTACTTATTCATGAT+TGG | + | chr4_1:45806453-45806472 | Msa0550380:intron | 30.0% | |
| !!! | CATGATTGGTTTTGAATTGT+AGG | + | chr4_1:45806467-45806486 | Msa0550380:intron | 30.0% |
| AATTGTAGGTGTATTTATGC+AGG | + | chr4_1:45806481-45806500 | Msa0550380:intron | 30.0% | |
| AAAACTTTATTCAAAGTGCG+GGG | - | chr4_1:45806548-45806567 | None:intergenic | 30.0% | |
| CAAAACTTTATTCAAAGTGC+GGG | - | chr4_1:45806549-45806568 | None:intergenic | 30.0% | |
| TTCAAAGAACAAACATTTCC+TGG | - | chr4_1:45806584-45806603 | None:intergenic | 30.0% | |
| GAGATATGGGAAACTAAAAT+AGG | + | chr4_1:45806614-45806633 | Msa0550380:CDS | 30.0% | |
| !! | TCATAATGCACTGATTCATA+AGG | - | chr4_1:45806713-45806732 | None:intergenic | 30.0% |
| AAACTTCTCAAAAGATTCTC+AGG | + | chr4_1:45806750-45806769 | Msa0550380:intron | 30.0% | |
| AACTTCTCAAAAGATTCTCA+GGG | + | chr4_1:45806751-45806770 | Msa0550380:intron | 30.0% | |
| CTGAAACTCTAAACAATGTT+TGG | + | chr4_1:45806888-45806907 | Msa0550380:intron | 30.0% | |
| CATTTAGAAGTAGAAGTTCA+TGG | + | chr4_1:45806917-45806936 | Msa0550380:intron | 30.0% | |
| GTGCCAGTTCAATAAAAATA+AGG | - | chr4_1:45807048-45807067 | None:intergenic | 30.0% | |
| CTTATAGAAGTAGAAACTCA+CGG | - | chr4_1:45807109-45807128 | None:intergenic | 30.0% | |
| ATATAATAGGGAATTCTGCT+AGG | + | chr4_1:45807889-45807908 | Msa0550380:three_prime_UTR | 30.0% | |
| !!! | TGAGATTTTTAAAGTGGTAG+AGG | - | chr4_1:45808076-45808095 | None:intergenic | 30.0% |
| TGAGACTTGATTCTGCTAAA+TGG | - | chr4_1:45804693-45804712 | None:intergenic | 35.0% | |
| CTCTAACAAGAGCAAATGTT+GGG | - | chr4_1:45804726-45804745 | None:intergenic | 35.0% | |
| TCTCTAACAAGAGCAAATGT+TGG | - | chr4_1:45804727-45804746 | None:intergenic | 35.0% | |
| ! | CAGAGAATGATACTTTGAGA+AGG | - | chr4_1:45804813-45804832 | None:intergenic | 35.0% |
| ! | AACCAAGTTGTTTGATAACC+CGG | - | chr4_1:45805010-45805029 | None:intergenic | 35.0% |
| !! | CAAACAACTTGGTTCTATCA+AGG | + | chr4_1:45805016-45805035 | Msa0550380:CDS | 35.0% |
| !!! | ACTTTTTCAGCTAACAAGGT+CGG | - | chr4_1:45805112-45805131 | None:intergenic | 35.0% |
| CCCGAACGAAAGTAAAAATT+CGG | - | chr4_1:45805221-45805240 | None:intergenic | 35.0% | |
| ! | CCGAATTTTTACTTTCGTTC+GGG | + | chr4_1:45805218-45805237 | Msa0550380:intron | 35.0% |
| ! | ATGAAGTATCCGATACCATT+TGG | + | chr4_1:45805464-45805483 | Msa0550380:intron | 35.0% |
| ATGTGTACCCAATAAGTACT+CGG | - | chr4_1:45805507-45805526 | None:intergenic | 35.0% | |
| GGAGAAAACTTTGTTGAGAT+TGG | - | chr4_1:45805540-45805559 | None:intergenic | 35.0% | |
| ACACCTTAAACAAGTGGTAA+TGG | - | chr4_1:45805585-45805604 | None:intergenic | 35.0% | |
| ! | CTTACATTTTCCCTTCCATT+AGG | + | chr4_1:45805671-45805690 | Msa0550380:intron | 35.0% |
| ! | GGTAGTCCCTAAACTATTTT+CGG | - | chr4_1:45805939-45805958 | None:intergenic | 35.0% |
| TAAATTGAAGAGTGATAGGC+AGG | + | chr4_1:45805972-45805991 | Msa0550380:intron | 35.0% | |
| AAATTGAAGAGTGATAGGCA+GGG | + | chr4_1:45805973-45805992 | Msa0550380:intron | 35.0% | |
| ! | TTCATGTAGGTTGAGTTTCA+AGG | - | chr4_1:45806054-45806073 | None:intergenic | 35.0% |
| AGATTCATCCCATCTGAATT+TGG | + | chr4_1:45806167-45806186 | Msa0550380:CDS | 35.0% | |
| AAGTTCACATACTTTAGCCT+TGG | - | chr4_1:45806204-45806223 | None:intergenic | 35.0% | |
| AAAGTATGTGAACTTGAGGA+TGG | + | chr4_1:45806209-45806228 | Msa0550380:CDS | 35.0% | |
| ! | GAAGTCACAATATTTGGTGA+CGG | + | chr4_1:45806377-45806396 | Msa0550380:CDS | 35.0% |
| AAAAGGTCTTTACTTGATCG+AGG | + | chr4_1:45806406-45806425 | Msa0550380:intron | 35.0% | |
| AAAGAACAAACATTTCCTGG+AGG | - | chr4_1:45806581-45806600 | None:intergenic | 35.0% | |
| TGTTTGTTCTTTGAATGAGC+TGG | + | chr4_1:45806589-45806608 | Msa0550380:CDS | 35.0% | |
| AAATAGGGAAGAAACTTGAG+AGG | + | chr4_1:45806630-45806649 | Msa0550380:CDS | 35.0% | |
| !!! | CTTGTTTTTGTCAACTTGCA+CGG | - | chr4_1:45806979-45806998 | None:intergenic | 35.0% |
| CGTGAGTTTCTACTTCTATA+AGG | + | chr4_1:45807107-45807126 | Msa0550380:intron | 35.0% | |
| !! | TTTTAAGTACCAATCCAAGG+TGG | + | chr4_1:45807162-45807181 | Msa0550380:intron | 35.0% |
| !! | ATACAGTGGACTACTTTGAT+AGG | - | chr4_1:45807192-45807211 | None:intergenic | 35.0% |
| ACTTAAGAGCTAAATGAGAG+AGG | - | chr4_1:45807265-45807284 | None:intergenic | 35.0% | |
| ! | TGTTAAGACTTTAAGAGGCA+TGG | + | chr4_1:45807418-45807437 | Msa0550380:intron | 35.0% |
| ! | AAAGCATCTCAAAGTTCGTT+GGG | - | chr4_1:45807532-45807551 | None:intergenic | 35.0% |
| !! | AAAAGCATCTCAAAGTTCGT+TGG | - | chr4_1:45807533-45807552 | None:intergenic | 35.0% |
| ! | TTCCACAATCAGCGAATTTT+TGG | + | chr4_1:45807649-45807668 | Msa0550380:CDS | 35.0% |
| TCGGAAAAATGGAATGTTCA+AGG | - | chr4_1:45807739-45807758 | None:intergenic | 35.0% | |
| AGGAAATGAAATTGTTGGTG+TGG | - | chr4_1:45808056-45808075 | None:intergenic | 35.0% | |
| GGTAGAGGAAATGAAATTGT+TGG | - | chr4_1:45808061-45808080 | None:intergenic | 35.0% | |
| CTTCAATGTCTTTCTCATGC+TGG | + | chr4_1:45804781-45804800 | Msa0550380:CDS | 40.0% | |
| TACAGCAAAAGCTACTCATC+CGG | + | chr4_1:45804988-45805007 | Msa0550380:CDS | 40.0% | |
| ATCCGGGTTATCAAACAACT+TGG | + | chr4_1:45805005-45805024 | Msa0550380:CDS | 40.0% | |
| GCTGATCGTTTATCTCTTGA+AGG | + | chr4_1:45805163-45805182 | Msa0550380:intron | 40.0% | |
| ATCTTCCACCGAGTACTTAT+TGG | + | chr4_1:45805496-45805515 | Msa0550380:intron | 40.0% | |
| TCTTCCACCGAGTACTTATT+GGG | + | chr4_1:45805497-45805516 | Msa0550380:intron | 40.0% | |
| ! | ACCACTTGTTTAAGGTGTCT+CGG | + | chr4_1:45805587-45805606 | Msa0550380:intron | 40.0% |
| GATCTGAGCCAAATTCAGAT+GGG | - | chr4_1:45806178-45806197 | None:intergenic | 40.0% | |
| !! | TCACATACTTTAGCCTTGGT+AGG | - | chr4_1:45806200-45806219 | None:intergenic | 40.0% |
| GGCTAAAGTATGTGAACTTG+AGG | + | chr4_1:45806205-45806224 | Msa0550380:CDS | 40.0% | |
| TTGCAGGAGATGATAGTATG+TGG | - | chr4_1:45806293-45806312 | None:intergenic | 40.0% | |
| AATCCTGGTTGAACAAGAGA+AGG | - | chr4_1:45806338-45806357 | None:intergenic | 40.0% | |
| AATATTGTGACTTCGTCCCT+AGG | - | chr4_1:45806371-45806390 | None:intergenic | 40.0% | |
| AGGGACGAAGTCACAATATT+TGG | + | chr4_1:45806371-45806390 | Msa0550380:CDS | 40.0% | |
| !! | TTTGGTGACGGCAATACAAA+AGG | + | chr4_1:45806389-45806408 | Msa0550380:CDS | 40.0% |
| TGAATGAGCTGGTTGAGATA+TGG | + | chr4_1:45806600-45806619 | Msa0550380:CDS | 40.0% | |
| GAATGAGCTGGTTGAGATAT+GGG | + | chr4_1:45806601-45806620 | Msa0550380:CDS | 40.0% | |
| GAGCTGCTTGAGAAAATCAA+AGG | + | chr4_1:45806671-45806690 | Msa0550380:CDS | 40.0% | |
| GGATCACCTTGATAGAAAGA+TGG | + | chr4_1:45806835-45806854 | Msa0550380:intron | 40.0% | |
| GGTGAACCATCTTTCTATCA+AGG | - | chr4_1:45806844-45806863 | None:intergenic | 40.0% | |
| GATAGAAAGATGGTTCACCT+TGG | + | chr4_1:45806845-45806864 | Msa0550380:intron | 40.0% | |
| CTATCTCAAAGGTAAAGACG+AGG | - | chr4_1:45806947-45806966 | None:intergenic | 40.0% | |
| GAGTCATCATATGGTGTGAA+TGG | + | chr4_1:45807599-45807618 | Msa0550380:CDS | 40.0% | |
| ATTGTGGAATATCTCAGCTG+TGG | - | chr4_1:45807638-45807657 | None:intergenic | 40.0% | |
| ! | GTCCAAAAATTCGCTGATTG+TGG | - | chr4_1:45807654-45807673 | None:intergenic | 40.0% |
| AAGCACGTTTGCACATTCTT+AGG | - | chr4_1:45807791-45807810 | None:intergenic | 40.0% | |
| ACAATGCTTGTTCTTTGGCA+AGG | + | chr4_1:45807824-45807843 | Msa0550380:three_prime_UTR | 40.0% | |
| !! | AGATGAAGCAAGCCTTGTTG+AGG | + | chr4_1:45804914-45804933 | Msa0550380:CDS | 45.0% |
| CTAACTTCACAGCCTCAACA+AGG | - | chr4_1:45804929-45804948 | None:intergenic | 45.0% | |
| ACAGCAAAAGCTACTCATCC+GGG | + | chr4_1:45804989-45805008 | Msa0550380:CDS | 45.0% | |
| TGTACCCAATAAGTACTCGG+TGG | - | chr4_1:45805504-45805523 | None:intergenic | 45.0% | |
| !! | AGTGGTAATGGTTTGATCCC+CGG | - | chr4_1:45805573-45805592 | None:intergenic | 45.0% |
| ACCGAGACACCTTAAACAAG+TGG | - | chr4_1:45805591-45805610 | None:intergenic | 45.0% | |
| TAACCTAACCAGCATGTGGT+TGG | - | chr4_1:45805629-45805648 | None:intergenic | 45.0% | |
| GGATCTGAGCCAAATTCAGA+TGG | - | chr4_1:45806179-45806198 | None:intergenic | 45.0% | |
| ! | ATTTGGCTCAGATCCTACCA+AGG | + | chr4_1:45806184-45806203 | Msa0550380:CDS | 45.0% |
| CTTCCTTCTCTTGTTCAACC+AGG | + | chr4_1:45806332-45806351 | Msa0550380:CDS | 45.0% | |
| AGGATTGAAAGCTCCTCCTA+GGG | + | chr4_1:45806352-45806371 | Msa0550380:CDS | 45.0% | |
| !! | TGCTGCTTTCACCATCAATG+CGG | + | chr4_1:45806514-45806533 | Msa0550380:CDS | 45.0% |
| ! | GTTTTGTACTTGAGACCTCC+AGG | + | chr4_1:45806563-45806582 | Msa0550380:CDS | 45.0% |
| !! | TTTTAAGAAGGCGGGTTCTG+AGG | + | chr4_1:45806811-45806830 | Msa0550380:intron | 45.0% |
| GGATCACGACACTATCTCAA+AGG | - | chr4_1:45806958-45806977 | None:intergenic | 45.0% | |
| !! | AAGGCGACGTTTGTTGTCAT+TGG | + | chr4_1:45807126-45807145 | Msa0550380:intron | 45.0% |
| ATAGGTGATCCACCTTGGAT+TGG | - | chr4_1:45807174-45807193 | None:intergenic | 45.0% | |
| CTTTGATAGGTGATCCACCT+TGG | - | chr4_1:45807179-45807198 | None:intergenic | 45.0% | |
| GTGTCAGGAAACAAAGACAG+TGG | - | chr4_1:45807982-45808001 | None:intergenic | 45.0% | |
| ATTGGTGCAACGGGAAGTCT+TGG | + | chr4_1:45804664-45804683 | Msa0550380:CDS | 50.0% | |
| ! | GTTTTCTCCATCGAGAGAGC+CGG | + | chr4_1:45805551-45805570 | Msa0550380:intron | 50.0% |
| ! | TTTTCTCCATCGAGAGAGCC+GGG | + | chr4_1:45805552-45805571 | Msa0550380:intron | 50.0% |
| CACTTGAACCAACCACATGC+TGG | + | chr4_1:45805618-45805637 | Msa0550380:intron | 50.0% | |
| ! | GAACCAACCACATGCTGGTT+AGG | + | chr4_1:45805623-45805642 | Msa0550380:intron | 50.0% |
| TGCGTAACCTAACCAGCATG+TGG | - | chr4_1:45805633-45805652 | None:intergenic | 50.0% | |
| AGGCAACTTGTGGAAGCTGA+AGG | + | chr4_1:45806263-45806282 | Msa0550380:CDS | 50.0% | |
| CTAGGAGGAGCTTTCAATCC+TGG | - | chr4_1:45806353-45806372 | None:intergenic | 50.0% | |
| CAGGATTGAAAGCTCCTCCT+AGG | + | chr4_1:45806351-45806370 | Msa0550380:CDS | 50.0% | |
| ATTGTGACTTCGTCCCTAGG+AGG | - | chr4_1:45806368-45806387 | None:intergenic | 50.0% | |
| CACGGTGCTTCTCATTCTCA+CGG | - | chr4_1:45807091-45807110 | None:intergenic | 50.0% | |
| GCTTGTTCTTTGGCAAGGAG+TGG | + | chr4_1:45807829-45807848 | Msa0550380:three_prime_UTR | 50.0% | |
| TTTCTCCATCGAGAGAGCCG+GGG | + | chr4_1:45805553-45805572 | Msa0550380:intron | 55.0% | |
| GGGATCGTCAACCGCATTGA+TGG | - | chr4_1:45806528-45806547 | None:intergenic | 55.0% | |
| !! | TAAGAAGGCGGGTTCTGAGG+TGG | + | chr4_1:45806814-45806833 | Msa0550380:intron | 55.0% |
| TTGATCCCCGGCTCTCTCGA+TGG | - | chr4_1:45805561-45805580 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 45804495 | 45808141 | 45804495 | ID=Msa0550380;Name=Msa0550380 |
| chr4_1 | mRNA | 45804495 | 45808141 | 45804495 | ID=Msa0550380-mRNA-1;Parent=Msa0550380;Name=Msa0550380-mRNA-1;_AED=0.04;_eAED=0.04;_QI=145|1|1|1|1|1|5|456|309 |
| chr4_1 | exon | 45804495 | 45804819 | 45804495 | ID=Msa0550380-mRNA-1:exon:12112;Parent=Msa0550380-mRNA-1 |
| chr4_1 | exon | 45804903 | 45805037 | 45804903 | ID=Msa0550380-mRNA-1:exon:12113;Parent=Msa0550380-mRNA-1 |
| chr4_1 | exon | 45806167 | 45806410 | 45806167 | ID=Msa0550380-mRNA-1:exon:12114;Parent=Msa0550380-mRNA-1 |
| chr4_1 | exon | 45806489 | 45806692 | 45806489 | ID=Msa0550380-mRNA-1:exon:12115;Parent=Msa0550380-mRNA-1 |
| chr4_1 | exon | 45807519 | 45808141 | 45807519 | ID=Msa0550380-mRNA-1:exon:12116;Parent=Msa0550380-mRNA-1 |
| chr4_1 | five_prime_UTR | 45804495 | 45804639 | 45804495 | ID=Msa0550380-mRNA-1:five_prime_utr;Parent=Msa0550380-mRNA-1 |
| chr4_1 | CDS | 45804640 | 45804819 | 45804640 | ID=Msa0550380-mRNA-1:cds;Parent=Msa0550380-mRNA-1 |
| chr4_1 | CDS | 45804903 | 45805037 | 45804903 | ID=Msa0550380-mRNA-1:cds;Parent=Msa0550380-mRNA-1 |
| chr4_1 | CDS | 45806167 | 45806410 | 45806167 | ID=Msa0550380-mRNA-1:cds;Parent=Msa0550380-mRNA-1 |
| chr4_1 | CDS | 45806489 | 45806692 | 45806489 | ID=Msa0550380-mRNA-1:cds;Parent=Msa0550380-mRNA-1 |
| chr4_1 | CDS | 45807519 | 45807685 | 45807519 | ID=Msa0550380-mRNA-1:cds;Parent=Msa0550380-mRNA-1 |
| chr4_1 | three_prime_UTR | 45807686 | 45808141 | 45807686 | ID=Msa0550380-mRNA-1:three_prime_utr;Parent=Msa0550380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
