AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0210840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0210840 MtrunA17_Chr2g0309321 80.415 337 25 5 1 303 1 330 0.0 506
Msa0210840 MtrunA17_Chr4g0058641 30.450 289 155 4 46 296 39 319 1.88e-37 135
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0210840 AT5G44600.1 47.887 284 106 3 57 298 50 333 2.23e-87 265
Msa0210840 AT5G44590.2 50.179 279 104 2 57 300 43 321 2.68e-84 257
Msa0210840 AT5G44590.1 47.138 297 104 3 57 300 43 339 1.12e-79 246
Msa0210840 AT5G63100.1 32.830 265 132 7 72 296 63 321 4.95e-27 108

Find 81 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGAAGCATAGTAGATTT+AGG 0.193449 2_1:-51220951 None:intergenic
TCCATCACTCCTGTGCTTAA+AGG 0.228397 2_1:-51225992 None:intergenic
AAAGGTCCCATTGCTATCTT+AGG 0.249398 2_1:+51222353 Msa0210840:CDS
TGTTCATAGCATTCTTTATA+AGG 0.265082 2_1:+51221085 Msa0210840:CDS
ATAGAGGAGAGTATTGATTT+TGG 0.292252 2_1:-51220777 None:intergenic
TTTGTATGAGGTGTTAATTA+TGG 0.320358 2_1:-51226176 None:intergenic
TGTGGAAAACTAAAACTAAA+TGG 0.322783 2_1:-51220699 None:intergenic
GGAGAAGCATAGTAGATTTA+GGG 0.323569 2_1:-51220950 None:intergenic
TATACATGTGAACAATTTCC+AGG 0.332766 2_1:+51223724 Msa0210840:CDS
TATTTCTAATGACTAGGTTT+TGG 0.334385 2_1:+51226454 Msa0210840:three_prime_UTR
AAGATAGCAATGGGACCTTT+TGG 0.339083 2_1:-51222350 None:intergenic
CTCATTGTTGCTTGCTCAAA+CGG 0.354933 2_1:-51220657 None:intergenic
TTGGAGAGAATGGATGATTA+TGG 0.357066 2_1:-51220800 None:intergenic
TCCCATTGCTATCTTAGGTT+TGG 0.373072 2_1:+51222358 Msa0210840:CDS
GTGAACTGCGGCGGGATCGA+TGG 0.374002 2_1:+51224909 Msa0210840:CDS
CGGCATTGCAACTCGAAGGC+TGG 0.376977 2_1:+51222534 Msa0210840:CDS
TTGTATGAGGTGTTAATTAT+GGG 0.386588 2_1:-51226175 None:intergenic
TACTTGTCCAGGAAATGCTT+TGG 0.390656 2_1:-51225009 None:intergenic
TGAACTGCGGCGGGATCGAT+GGG 0.399386 2_1:+51224910 Msa0210840:CDS
AAATTCTCACCCGTTTCCTT+TGG 0.400929 2_1:-51225911 None:intergenic
AACAAGTCAACCACAATTCC+TGG 0.403504 2_1:-51223742 None:intergenic
CACGGCGAACACCTCGTTTA+CGG 0.404159 2_1:+51226478 Msa0210840:three_prime_UTR
TATTAGGCTTTATTTGTATG+AGG 0.415504 2_1:-51226188 None:intergenic
GCATTATCCAAAGCATTTCC+TGG 0.417765 2_1:+51225002 Msa0210840:CDS
TGGAACAATGGCTGGTAAGC+TGG 0.424142 2_1:-51222330 None:intergenic
CCTTACCTGATCTAAAATCT+TGG 0.433757 2_1:+51225951 Msa0210840:CDS
GGAATTACATGATAGATTGA+TGG 0.439351 2_1:+51224869 Msa0210840:CDS
GAATGGATGATTATGGATAG+AGG 0.443261 2_1:-51220793 None:intergenic
AAAAGTGGACTAATTCCTAC+TGG 0.444949 2_1:+51221111 Msa0210840:CDS
ATGATGTGGCTGTTGATGTT+GGG 0.452968 2_1:-51220835 None:intergenic
TGAAGTGAAGTTGGAGAGAA+TGG 0.462689 2_1:-51220810 None:intergenic
TGTTGGGCATGAAGTGAAGT+TGG 0.469893 2_1:-51220819 None:intergenic
GAAGAGAATGCCAAAGGAAA+CGG 0.472724 2_1:+51225901 Msa0210840:CDS
CAGCCTTCGAGTTGCAATGC+CGG 0.476454 2_1:-51222533 None:intergenic
CATGATGTGGCTGTTGATGT+TGG 0.477148 2_1:-51220836 None:intergenic
ACCAAACCTAAGATAGCAAT+GGG 0.480667 2_1:-51222359 None:intergenic
TCCTTTAAGCACAGGAGTGA+TGG 0.481104 2_1:+51225991 Msa0210840:CDS
CTGCGGCGGGATCGATGGGG+TGG 0.485766 2_1:+51224914 Msa0210840:CDS
CTGACAGGTTAGTACTTGGT+TGG 0.487497 2_1:+51224848 Msa0210840:intron
AAATAGACGCTTACTTGTCC+AGG 0.498402 2_1:-51225020 None:intergenic
ACTCCTGTGCTTAAAGGAGA+TGG 0.500537 2_1:-51225986 None:intergenic
GGCATTGCAACTCGAAGGCT+GGG 0.503163 2_1:+51222535 Msa0210840:CDS
TTGTCTGACAGGTTAGTACT+TGG 0.503970 2_1:+51224844 Msa0210840:intron
TAAGCACAGGAGTGATGGAT+TGG 0.505919 2_1:+51225996 Msa0210840:CDS
TTACCAGCCATTGTTCCAAA+AGG 0.511816 2_1:+51222335 Msa0210840:CDS
TCTTCTTCTTGATCATGATG+TGG 0.512477 2_1:-51220849 None:intergenic
AAAATATGATTTGTAGGGAA+AGG 0.521603 2_1:+51226074 Msa0210840:three_prime_UTR
TGTGGAGGTCTCAAAGGGCT+AGG 0.524356 2_1:-51226510 None:intergenic
AAGAGAATGCCAAAGGAAAC+GGG 0.525414 2_1:+51225902 Msa0210840:CDS
CTCATCTGATGCTTGAATTG+TGG 0.526429 2_1:+51222510 Msa0210840:CDS
GGCGGGATCGATGGGGTGGA+TGG 0.530453 2_1:+51224918 Msa0210840:CDS
GTCCCATCTCCTTTAAGCAC+AGG 0.532466 2_1:+51225983 Msa0210840:CDS
GTGGTTGACTTGTTCTCTGA+CGG 0.550045 2_1:+51223751 Msa0210840:CDS
TGACAAGAGGAGAAAGCAAT+GGG 0.550569 2_1:+51220598 None:intergenic
CTCCTGTGCTTAAAGGAGAT+GGG 0.552215 2_1:-51225985 None:intergenic
TTGTCGTACGAGAAGAATCA+AGG 0.557833 2_1:-51220971 None:intergenic
TCTGATGCTTGAATTGTGGC+CGG 0.563302 2_1:+51222514 Msa0210840:CDS
AAACATACCTCTTGCAGCTG+AGG 0.563965 2_1:-51223784 None:intergenic
AATTATCAAATGACGAGGCA+TGG 0.572264 2_1:+51224958 Msa0210840:CDS
TGAACAATTTCCAGGAATTG+TGG 0.573919 2_1:+51223732 Msa0210840:CDS
TACCAAACCTAAGATAGCAA+TGG 0.583738 2_1:-51222360 None:intergenic
CATGATAGATTGATGGCCAA+TGG 0.587007 2_1:+51224876 Msa0210840:CDS
TCTAGTTATTTCTAATGACT+AGG 0.588328 2_1:+51226448 Msa0210840:three_prime_UTR
TTTGAGCAAGCAACAATGAG+AGG 0.588962 2_1:+51220660 Msa0210840:exon
GACATGTGTGGAGGTCTCAA+AGG 0.602454 2_1:-51226516 None:intergenic
GTGACAAGAGGAGAAAGCAA+TGG 0.608858 2_1:+51220597 None:intergenic
GTTCACCATAAAACGACCAT+TGG 0.610306 2_1:-51224892 None:intergenic
GAAACACCAATGTCAATGTG+TGG 0.617133 2_1:-51220717 None:intergenic
GAGAAGCATAGTAGATTTAG+GGG 0.618045 2_1:-51220949 None:intergenic
TGGCCGGCATTGCAACTCGA+AGG 0.621440 2_1:+51222530 Msa0210840:CDS
TGAACGAACATAGAGAATTG+AGG 0.626176 2_1:+51220621 Msa0210840:five_prime_UTR
TCATTAGAAATAACTAGAGG+AGG 0.626620 2_1:-51226443 None:intergenic
ACATGTGTGGAGGTCTCAAA+GGG 0.632423 2_1:-51226515 None:intergenic
AAAGTGGACTAATTCCTACT+GGG 0.641570 2_1:+51221112 Msa0210840:CDS
TTGAGCAAGCAACAATGAGA+GGG 0.645970 2_1:+51220661 Msa0210840:exon
AAGTAACATACATACCCAGT+AGG 0.656319 2_1:-51221126 None:intergenic
ATTCTAGAAACTATTTCACA+AGG 0.660007 2_1:-51226022 None:intergenic
GAACTGCGGCGGGATCGATG+GGG 0.666515 2_1:+51224911 Msa0210840:CDS
ATGTTGGAAGAGAATGCCAA+AGG 0.667941 2_1:+51225895 Msa0210840:CDS
GGACTGACAGTCCGTAAACG+AGG 0.672844 2_1:-51226489 None:intergenic
TAGTCATTAGAAATAACTAG+AGG 0.682907 2_1:-51226446 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTGACT+AGG - chr2_1:51221941-51221960 None:intergenic 10.0%
!! TATGTAATTAAAAAAGTTAT+CGG - chr2_1:51222690-51222709 None:intergenic 10.0%
!! AAATATTTATTAGATATGAA+GGG - chr2_1:51223022-51223041 None:intergenic 10.0%
!! AAAATATTTATTAGATATGA+AGG - chr2_1:51223023-51223042 None:intergenic 10.0%
!! ACATCAATAATAATATAAAT+TGG + chr2_1:51223905-51223924 Msa0210840:intron 10.0%
!! ATAATAATATAAATTGGAAT+TGG + chr2_1:51223911-51223930 Msa0210840:intron 10.0%
!! AAAATTTGTAATCTTTATAT+GGG + chr2_1:51225105-51225124 Msa0210840:intron 10.0%
!!! TATGATTTGAGAATTTTTTT+TGG + chr2_1:51221247-51221266 Msa0210840:intron 15.0%
!! TATAACATAATTGACATTTA+AGG - chr2_1:51222443-51222462 None:intergenic 15.0%
!!! ATACTGTTTTTTAAATCTTT+AGG + chr2_1:51222472-51222491 Msa0210840:intron 15.0%
!!! TACTGTTTTTTAAATCTTTA+GGG + chr2_1:51222473-51222492 Msa0210840:intron 15.0%
!! AACAAGTAAAAACATATAAA+GGG - chr2_1:51223937-51223956 None:intergenic 15.0%
!! CAAAATTTGTAATCTTTATA+TGG + chr2_1:51225104-51225123 Msa0210840:intron 15.0%
!! TAATCTTTATATGAGATATA+AGG + chr2_1:51225199-51225218 Msa0210840:intron 15.0%
!! AATCTTTATATGAGATATAA+GGG + chr2_1:51225200-51225219 Msa0210840:intron 15.0%
!!! AATACAAAACGTTTTATTAT+TGG + chr2_1:51225255-51225274 Msa0210840:intron 15.0%
!! TTTAAATTGGAAAATCAAAA+TGG - chr2_1:51225282-51225301 None:intergenic 15.0%
!! AATGTCTAATCAATTTAAAT+TGG - chr2_1:51225295-51225314 None:intergenic 15.0%
!!! TTTAGTTTCATAGATTATTT+TGG - chr2_1:51225413-51225432 None:intergenic 15.0%
!!! AATTTTGAAATGTTAATTTC+AGG + chr2_1:51225719-51225738 Msa0210840:intron 15.0%
!!! ATTTTGAAATGTTAATTTCA+GGG + chr2_1:51225720-51225739 Msa0210840:intron 15.0%
!! TTAAAAAAGTCACATAATAA+AGG - chr2_1:51225833-51225852 None:intergenic 15.0%
!!! AATGTAAAAATATGATTTGT+AGG + chr2_1:51226068-51226087 Msa0210840:three_prime_UTR 15.0%
!!! ATGTAAAAATATGATTTGTA+GGG + chr2_1:51226069-51226088 Msa0210840:three_prime_UTR 15.0%
!! ATATGTCAGCTATATATATT+AGG - chr2_1:51221838-51221857 None:intergenic 20.0%
!! AATTTCTAACATTATGTCAA+CGG - chr2_1:51222077-51222096 None:intergenic 20.0%
!! ACTTATAAGTATCAACATTT+AGG - chr2_1:51222211-51222230 None:intergenic 20.0%
!! GTAATTTCTTAATCTTAAGA+TGG + chr2_1:51222380-51222399 Msa0210840:intron 20.0%
!! ATTATCTTGGTCAATTTATA+AGG + chr2_1:51222408-51222427 Msa0210840:intron 20.0%
!! ATTTGAGTATAGATTATAGA+AGG + chr2_1:51222876-51222895 Msa0210840:intron 20.0%
!! CATGGTAAAATTAAATAACT+TGG + chr2_1:51222929-51222948 Msa0210840:intron 20.0%
!!! CAAATACTCTACAATTTTTA+TGG + chr2_1:51222992-51223011 Msa0210840:intron 20.0%
!! TTTCCGAGAAAATAAAATTT+GGG - chr2_1:51223201-51223220 None:intergenic 20.0%
!!! TTTTCCGAGAAAATAAAATT+TGG - chr2_1:51223202-51223221 None:intergenic 20.0%
!! TTATCGATCAACTAAATATT+TGG - chr2_1:51223225-51223244 None:intergenic 20.0%
!!! AATTAAGTTGTTTATCCAAA+CGG + chr2_1:51223438-51223457 Msa0210840:intron 20.0%
!! TTTCTCTTTGACTATTTAAT+GGG + chr2_1:51223673-51223692 Msa0210840:intron 20.0%
!! GAACAAGTAAAAACATATAA+AGG - chr2_1:51223938-51223957 None:intergenic 20.0%
!! ACATAATTAGAGAAAGTAAT+AGG - chr2_1:51224569-51224588 None:intergenic 20.0%
!! GCTTAAGCAAAAAAATTAAT+TGG + chr2_1:51224619-51224638 Msa0210840:intron 20.0%
!! AAAAAAATTAATTGGACCAA+TGG + chr2_1:51224627-51224646 Msa0210840:intron 20.0%
!!! TCGTCATTTGATAATTTTTT+TGG - chr2_1:51224954-51224973 None:intergenic 20.0%
!! AAAAAAATTATCAAATGACG+AGG + chr2_1:51224953-51224972 Msa0210840:CDS 20.0%
!!! TTTTTACATTTACTATGAAG+TGG - chr2_1:51226058-51226077 None:intergenic 20.0%
!!! TATTCTTTTGACATTTTCTT+GGG + chr2_1:51226127-51226146 Msa0210840:three_prime_UTR 20.0%
! TGTGGAAAACTAAAACTAAA+TGG - chr2_1:51220702-51220721 None:intergenic 25.0%
! TGTTCATAGCATTCTTTATA+AGG + chr2_1:51221085-51221104 Msa0210840:CDS 25.0%
! TTCTTTATAAGGACAAAAAG+TGG + chr2_1:51221096-51221115 Msa0210840:CDS 25.0%
! ATTAACTTACTTGACACAAT+AGG + chr2_1:51221220-51221239 Msa0210840:intron 25.0%
! TTATCATCATTGCTGATAAT+AGG - chr2_1:51221287-51221306 None:intergenic 25.0%
! TGTCTAATTCTCTTACAATT+TGG + chr2_1:51221325-51221344 Msa0210840:intron 25.0%
! GTCTAATTCTCTTACAATTT+GGG + chr2_1:51221326-51221345 Msa0210840:intron 25.0%
! AATTGTATTAATCTCGTTCT+TGG + chr2_1:51221523-51221542 Msa0210840:intron 25.0%
! ATTGTATTAATCTCGTTCTT+GGG + chr2_1:51221524-51221543 Msa0210840:intron 25.0%
! GTACTGTAAAACTAAAGTAT+AGG + chr2_1:51221861-51221880 Msa0210840:intron 25.0%
! CAGTAACTTATAATTTGACT+AGG - chr2_1:51221981-51222000 None:intergenic 25.0%
! ATTTCTAACATTATGTCAAC+GGG - chr2_1:51222076-51222095 None:intergenic 25.0%
! TAGATGAATTATTCATCACA+AGG + chr2_1:51222271-51222290 Msa0210840:intron 25.0%
! AGATGAATTATTCATCACAA+GGG + chr2_1:51222272-51222291 Msa0210840:intron 25.0%
! TAAGATGGAGTATATTATCT+TGG + chr2_1:51222395-51222414 Msa0210840:intron 25.0%
!!! TGTTTTTTAAATCTTTAGGG+TGG + chr2_1:51222476-51222495 Msa0210840:intron 25.0%
!! ACAAACATGAAATTTGTTCT+TGG + chr2_1:51222789-51222808 Msa0210840:intron 25.0%
!!! ATTATAGAAGGTACTTTCAT+TGG + chr2_1:51222888-51222907 Msa0210840:intron 25.0%
!!! ATTTTTTATATGAAGATGCC+AGG + chr2_1:51223038-51223057 Msa0210840:intron 25.0%
!!! TCACCCAAATTTTATTTTCT+CGG + chr2_1:51223195-51223214 Msa0210840:intron 25.0%
!! GATAAAGCAAGAGATTATTT+TGG + chr2_1:51223240-51223259 Msa0210840:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+GGG + chr2_1:51223439-51223458 Msa0210840:intron 25.0%
! TAACCAATCTAACTAACTAA+TGG + chr2_1:51223498-51223517 Msa0210840:intron 25.0%
! AACATTAATGCATCATTGAA+TGG + chr2_1:51223586-51223605 Msa0210840:intron 25.0%
! CATTAAATAGTCAAAGAGAA+AGG - chr2_1:51223674-51223693 None:intergenic 25.0%
! CTTTCTCTTTGACTATTTAA+TGG + chr2_1:51223672-51223691 Msa0210840:intron 25.0%
! TTCTCTTTGACTATTTAATG+GGG + chr2_1:51223674-51223693 Msa0210840:intron 25.0%
! GGTCATTATAAAATTGTTCT+TGG + chr2_1:51223824-51223843 Msa0210840:intron 25.0%
! GTTTAGGTCATTCATTTATA+TGG + chr2_1:51224002-51224021 Msa0210840:intron 25.0%
! GTCATTCATTTATATGGTAT+AGG + chr2_1:51224008-51224027 Msa0210840:intron 25.0%
! CTGCAATTAACAAAATATAC+CGG - chr2_1:51224096-51224115 None:intergenic 25.0%
!! GGTATATTTTGTTAATTGCA+GGG + chr2_1:51224095-51224114 Msa0210840:intron 25.0%
! AGGTTAATGGGAATAAAATA+TGG + chr2_1:51224188-51224207 Msa0210840:intron 25.0%
!! AGAAAACATGGTTGATATTA+TGG + chr2_1:51224233-51224252 Msa0210840:intron 25.0%
! GAAAAATAGAAAAGTGAAGA+TGG + chr2_1:51224255-51224274 Msa0210840:intron 25.0%
! TTTATGCAGTTATCAAGATA+AGG - chr2_1:51224424-51224443 None:intergenic 25.0%
!! TATCTTGATAACTGCATAAA+AGG + chr2_1:51224424-51224443 Msa0210840:intron 25.0%
!! ATCTTGATAACTGCATAAAA+GGG + chr2_1:51224425-51224444 Msa0210840:intron 25.0%
! TAATAAAAGCTCATAGGATA+GGG - chr2_1:51224455-51224474 None:intergenic 25.0%
!! TAATGCACAAACAGTTATTT+TGG + chr2_1:51224508-51224527 Msa0210840:intron 25.0%
! TATTATGATTCCATAACCAT+TGG - chr2_1:51224646-51224665 None:intergenic 25.0%
!!! TTTTTTCCTTGAGAAATCAA+AGG + chr2_1:51224751-51224770 Msa0210840:intron 25.0%
!! TTTGTTTAGCTCATATTCTT+AGG - chr2_1:51225088-51225107 None:intergenic 25.0%
! AAACTTCATGTGTTAGAATA+GGG - chr2_1:51225164-51225183 None:intergenic 25.0%
! AAAACTTCATGTGTTAGAAT+AGG - chr2_1:51225165-51225184 None:intergenic 25.0%
!!! TTGATTGCATTAGTCTTTTT+GGG - chr2_1:51225680-51225699 None:intergenic 25.0%
!!! ATTGATTGCATTAGTCTTTT+TGG - chr2_1:51225681-51225700 None:intergenic 25.0%
! AAAAAGACTAATGCAATCAA+TGG + chr2_1:51225680-51225699 Msa0210840:intron 25.0%
! TTTAGTCCCTAAAATTGTAA+GGG - chr2_1:51225760-51225779 None:intergenic 25.0%
! ATTTAGTCCCTAAAATTGTA+AGG - chr2_1:51225761-51225780 None:intergenic 25.0%
! AAAGTCACATAATAAAGGAA+AGG - chr2_1:51225828-51225847 None:intergenic 25.0%
!! ATTCTAGAAACTATTTCACA+AGG - chr2_1:51226025-51226044 None:intergenic 25.0%
!! AAAATATGATTTGTAGGGAA+AGG + chr2_1:51226074-51226093 Msa0210840:three_prime_UTR 25.0%
!! GTATTCTTTTGACATTTTCT+TGG + chr2_1:51226126-51226145 Msa0210840:three_prime_UTR 25.0%
!! ATTCTTTTGACATTTTCTTG+GGG + chr2_1:51226128-51226147 Msa0210840:three_prime_UTR 25.0%
!! TTGTATGAGGTGTTAATTAT+GGG - chr2_1:51226178-51226197 None:intergenic 25.0%
!! TTTGTATGAGGTGTTAATTA+TGG - chr2_1:51226179-51226198 None:intergenic 25.0%
!!! TATTAGGCTTTATTTGTATG+AGG - chr2_1:51226191-51226210 None:intergenic 25.0%
! TTATTTCAAAGTAATACCTC+AGG + chr2_1:51226247-51226266 Msa0210840:intron 25.0%
! ATTATAACCAAACAAACCAT+AGG + chr2_1:51226280-51226299 Msa0210840:intron 25.0%
!!! TTTATAACCTATGGTTTGTT+TGG - chr2_1:51226290-51226309 None:intergenic 25.0%
! TAGTCATTAGAAATAACTAG+AGG - chr2_1:51226449-51226468 None:intergenic 25.0%
!!! TCTAGTTATTTCTAATGACT+AGG + chr2_1:51226448-51226467 Msa0210840:three_prime_UTR 25.0%
!!! TATTTCTAATGACTAGGTTT+TGG + chr2_1:51226454-51226473 Msa0210840:three_prime_UTR 25.0%
!!! AGAGTATTGATTTTGGTGTT+GGG - chr2_1:51220773-51220792 None:intergenic 30.0%
!!! ATAGAGGAGAGTATTGATTT+TGG - chr2_1:51220780-51220799 None:intergenic 30.0%
AGAAACAGAGAAAACAAAGT+GGG - chr2_1:51221000-51221019 None:intergenic 30.0%
TAGAAACAGAGAAAACAAAG+TGG - chr2_1:51221001-51221020 None:intergenic 30.0%
TTAATTCAACCCTACAAAAC+CGG + chr2_1:51221355-51221374 Msa0210840:intron 30.0%
ATTGTATTCACTGTGTGATT+GGG - chr2_1:51221789-51221808 None:intergenic 30.0%
TGAATACAATGACACAAGTA+CGG + chr2_1:51221799-51221818 Msa0210840:intron 30.0%
TTTCTAACATTATGTCAACG+GGG - chr2_1:51222075-51222094 None:intergenic 30.0%
ATATATGAACCACACGATAA+AGG - chr2_1:51222105-51222124 None:intergenic 30.0%
TTTATCGTGTGGTTCATATA+TGG + chr2_1:51222104-51222123 Msa0210840:intron 30.0%
!! GTGTTACATTGATTTGTCTT+CGG + chr2_1:51222126-51222145 Msa0210840:intron 30.0%
! CTGAACTTTTTGCATTAAAC+AGG + chr2_1:51222298-51222317 Msa0210840:intron 30.0%
!!! TTTTTAAATCTTTAGGGTGG+TGG + chr2_1:51222479-51222498 Msa0210840:intron 30.0%
TTTCAATTCTATCTCTGCTA+TGG + chr2_1:51222654-51222673 Msa0210840:intron 30.0%
TAACTTTCTTGTAGAACTTG+CGG - chr2_1:51222716-51222735 None:intergenic 30.0%
! AGAGTATTTGAACATGAACA+TGG - chr2_1:51222982-51223001 None:intergenic 30.0%
TTGCCTAAAACAGAAGAAAA+AGG - chr2_1:51223066-51223085 None:intergenic 30.0%
GATAACAATCAACAAGACAT+TGG - chr2_1:51223122-51223141 None:intergenic 30.0%
! CATTGATTAGATCCATAATG+CGG + chr2_1:51223159-51223178 Msa0210840:intron 30.0%
!!! TTATTTTGGCTTATCTGATC+TGG + chr2_1:51223254-51223273 Msa0210840:intron 30.0%
GGCATTCTAAATGTTCATAT+TGG + chr2_1:51223297-51223316 Msa0210840:intron 30.0%
ATACAATGAAAATGACTCAC+CGG - chr2_1:51223364-51223383 None:intergenic 30.0%
! TTAAGTTGTTTATCCAAACG+GGG + chr2_1:51223440-51223459 Msa0210840:intron 30.0%
AGTCCATTAGTTAGTTAGAT+TGG - chr2_1:51223504-51223523 None:intergenic 30.0%
! CACATCTTAACATAATGGAA+CGG + chr2_1:51223543-51223562 Msa0210840:intron 30.0%
TACTCCTACTGCATAAAATA+AGG - chr2_1:51223635-51223654 None:intergenic 30.0%
TATACATGTGAACAATTTCC+AGG + chr2_1:51223724-51223743 Msa0210840:CDS 30.0%
ACAGGAACTTATAAAAGATC+CGG + chr2_1:51224074-51224093 Msa0210840:intron 30.0%
! CGGTATATTTTGTTAATTGC+AGG + chr2_1:51224094-51224113 Msa0210840:intron 30.0%
TAGATAGTCATCAGAAAACA+TGG + chr2_1:51224221-51224240 Msa0210840:intron 30.0%
AATCTTTGTTCTTTCAACAG+AGG - chr2_1:51224347-51224366 None:intergenic 30.0%
CTGTTGAAAGAACAAAGATT+AGG + chr2_1:51224347-51224366 Msa0210840:intron 30.0%
AATAAAAGCTCATAGGATAG+GGG - chr2_1:51224454-51224473 None:intergenic 30.0%
CTAATAAAAGCTCATAGGAT+AGG - chr2_1:51224456-51224475 None:intergenic 30.0%
GCAAACTAATAAAAGCTCAT+AGG - chr2_1:51224461-51224480 None:intergenic 30.0%
CTTAAGCTCATAAATGTTCT+AGG - chr2_1:51224606-51224625 None:intergenic 30.0%
ATTAATTGGACCAATGGTTA+TGG + chr2_1:51224633-51224652 Msa0210840:intron 30.0%
! CTAGACTCAAACTTCTATTT+TGG - chr2_1:51224692-51224711 None:intergenic 30.0%
! TTCATACCTTTGATTTCTCA+AGG - chr2_1:51224760-51224779 None:intergenic 30.0%
! AAGTTAACTTTTATCATCGC+AGG + chr2_1:51224790-51224809 Msa0210840:intron 30.0%
! TAGTTCTTTATTTGTCTGAC+AGG + chr2_1:51224833-51224852 Msa0210840:intron 30.0%
GGAATTACATGATAGATTGA+TGG + chr2_1:51224869-51224888 Msa0210840:CDS 30.0%
GAAGTAGTATAACAGTGAAA+TGG - chr2_1:51225066-51225085 None:intergenic 30.0%
GTCTAAATAAACTGACCAAA+AGG - chr2_1:51225646-51225665 None:intergenic 30.0%
TTTGGTCAGTTTATTTAGAC+CGG + chr2_1:51225646-51225665 Msa0210840:intron 30.0%
!! GAAGTTGGTATTAATACAAC+AGG - chr2_1:51225801-51225820 None:intergenic 30.0%
! TTTTCATTTCTCAGCTATGT+TGG + chr2_1:51225879-51225898 Msa0210840:intron 30.0%
! CAAGATTTTAGATCAGGTAA+GGG - chr2_1:51225953-51225972 None:intergenic 30.0%
! CGATGCATGTCTATTTTATT+AGG - chr2_1:51226207-51226226 None:intergenic 30.0%
ACCATAGGTTATAAAATCCA+TGG + chr2_1:51226295-51226314 Msa0210840:intron 30.0%
CCATAGGTTATAAAATCCAT+GGG + chr2_1:51226296-51226315 Msa0210840:intron 30.0%
! TGCAATGGAACAATTTCTTT+TGG - chr2_1:51226334-51226353 None:intergenic 30.0%
TCATTAGAAATAACTAGAGG+AGG - chr2_1:51226446-51226465 None:intergenic 30.0%
TGAACGAACATAGAGAATTG+AGG + chr2_1:51220621-51220640 Msa0210840:five_prime_UTR 35.0%
! AGTTTTCCACACATTGACAT+TGG + chr2_1:51220711-51220730 Msa0210840:CDS 35.0%
!!! GAGTATTGATTTTGGTGTTG+GGG - chr2_1:51220772-51220791 None:intergenic 35.0%
!!! GAGAGTATTGATTTTGGTGT+TGG - chr2_1:51220774-51220793 None:intergenic 35.0%
GAATGGATGATTATGGATAG+AGG - chr2_1:51220796-51220815 None:intergenic 35.0%
TTGGAGAGAATGGATGATTA+TGG - chr2_1:51220803-51220822 None:intergenic 35.0%
TCTTCTTCTTGATCATGATG+TGG - chr2_1:51220852-51220871 None:intergenic 35.0%
! GAGAAGCATAGTAGATTTAG+GGG - chr2_1:51220952-51220971 None:intergenic 35.0%
! GGAGAAGCATAGTAGATTTA+GGG - chr2_1:51220953-51220972 None:intergenic 35.0%
! AGGAGAAGCATAGTAGATTT+AGG - chr2_1:51220954-51220973 None:intergenic 35.0%
!! AAAAGTGGACTAATTCCTAC+TGG + chr2_1:51221111-51221130 Msa0210840:CDS 35.0%
!! AAAGTGGACTAATTCCTACT+GGG + chr2_1:51221112-51221131 Msa0210840:CDS 35.0%
AAGTAACATACATACCCAGT+AGG - chr2_1:51221129-51221148 None:intergenic 35.0%
CTAAGCATGCTTACAAAGTT+TGG - chr2_1:51221388-51221407 None:intergenic 35.0%
CAAACTTTGTAAGCATGCTT+AGG + chr2_1:51221386-51221405 Msa0210840:intron 35.0%
TTGTATTCACTGTGTGATTG+GGG - chr2_1:51221788-51221807 None:intergenic 35.0%
CATTGTATTCACTGTGTGAT+TGG - chr2_1:51221790-51221809 None:intergenic 35.0%
AATTTGACACCTTTATCGTG+TGG + chr2_1:51222093-51222112 Msa0210840:intron 35.0%
ACCAAACCTAAGATAGCAAT+GGG - chr2_1:51222362-51222381 None:intergenic 35.0%
TACCAAACCTAAGATAGCAA+TGG - chr2_1:51222363-51222382 None:intergenic 35.0%
TAGTCAAACTATAGCTGACA+TGG + chr2_1:51222911-51222930 Msa0210840:intron 35.0%
ACATGGTATTAAGACTGACT+TGG - chr2_1:51222965-51222984 None:intergenic 35.0%
! GTGCCTTTTTCTTCTGTTTT+AGG + chr2_1:51223060-51223079 Msa0210840:intron 35.0%
! ATTGGTTAGCTAGTTAGGTA+GGG - chr2_1:51223486-51223505 None:intergenic 35.0%
! GTTAGATTGGTTAGCTAGTT+AGG - chr2_1:51223491-51223510 None:intergenic 35.0%
TCCATTATGTTAAGATGTGG+CGG - chr2_1:51223542-51223561 None:intergenic 35.0%
CGTTCCATTATGTTAAGATG+TGG - chr2_1:51223545-51223564 None:intergenic 35.0%
AAAATAAGGATCCATTCACG+TGG - chr2_1:51223621-51223640 None:intergenic 35.0%
!!! GGATCCTTATTTTATGCAGT+AGG + chr2_1:51223628-51223647 Msa0210840:intron 35.0%
AGAGAAAGGTGATTTCTGTA+TGG - chr2_1:51223660-51223679 None:intergenic 35.0%
TGAACAATTTCCAGGAATTG+TGG + chr2_1:51223732-51223751 Msa0210840:CDS 35.0%
GTTTCAGATTTGCAAGTTCT+AGG + chr2_1:51223803-51223822 Msa0210840:intron 35.0%
! CTTGGAAAGATGACAACTTT+TGG + chr2_1:51223842-51223861 Msa0210840:intron 35.0%
CTGTATCTCACGAAGAAAAT+TGG - chr2_1:51223983-51224002 None:intergenic 35.0%
TTCTTCGTGAGATACAGTTT+AGG + chr2_1:51223986-51224005 Msa0210840:intron 35.0%
TATAGGAAGATCAGAGTTTG+TGG + chr2_1:51224025-51224044 Msa0210840:intron 35.0%
! TACTCATGTGAGTTTTTGAC+AGG + chr2_1:51224056-51224075 Msa0210840:intron 35.0%
! GATCCAAATCTGAGGTTAAT+GGG + chr2_1:51224176-51224195 Msa0210840:intron 35.0%
ATTCCCATTAACCTCAGATT+TGG - chr2_1:51224182-51224201 None:intergenic 35.0%
ATAAAAGCTCATAGGATAGG+GGG - chr2_1:51224453-51224472 None:intergenic 35.0%
TGCCTCTTATTCGAAAATCA+AGG + chr2_1:51224535-51224554 Msa0210840:intron 35.0%
! CACCTTGATTTTCGAATAAG+AGG - chr2_1:51224540-51224559 None:intergenic 35.0%
AATTATCAAATGACGAGGCA+TGG + chr2_1:51224958-51224977 Msa0210840:CDS 35.0%
ACTAGCATCTGTTTACTTTC+TGG - chr2_1:51225141-51225160 None:intergenic 35.0%
GTGCTGTCAATGTCAAATAT+CGG + chr2_1:51225437-51225456 Msa0210840:intron 35.0%
AACTGACCAAAAGGACTAAT+GGG - chr2_1:51225637-51225656 None:intergenic 35.0%
AAACTGACCAAAAGGACTAA+TGG - chr2_1:51225638-51225657 None:intergenic 35.0%
! TGTCTGACCCTTACAATTTT+AGG + chr2_1:51225750-51225769 Msa0210840:intron 35.0%
! GTCTGACCCTTACAATTTTA+GGG + chr2_1:51225751-51225770 Msa0210840:intron 35.0%
TAAAGGAAAGGATGTGAAGT+TGG - chr2_1:51225816-51225835 None:intergenic 35.0%
! GAGAATTTTATGGCACTTAC+AGG + chr2_1:51225926-51225945 Msa0210840:CDS 35.0%
! CCAAGATTTTAGATCAGGTA+AGG - chr2_1:51225954-51225973 None:intergenic 35.0%
! CCTTACCTGATCTAAAATCT+TGG + chr2_1:51225951-51225970 Msa0210840:CDS 35.0%
TATAATGCAACATGATCCTG+AGG - chr2_1:51226266-51226285 None:intergenic 35.0%
! CCCATGGATTTTATAACCTA+TGG - chr2_1:51226299-51226318 None:intergenic 35.0%
TCCATTGCATCAACATCTAA+TGG + chr2_1:51226345-51226364 Msa0210840:intron 35.0%
AACAGTGCATCAACATCTAA+TGG - chr2_1:51226385-51226404 None:intergenic 35.0%
! TGTGTTGTTAGATGTTGTCT+AGG - chr2_1:51226413-51226432 None:intergenic 35.0%
!! TAATGACTAGGTTTTGGTCA+CGG + chr2_1:51226460-51226479 Msa0210840:three_prime_UTR 35.0%
! CTCATTGTTGCTTGCTCAAA+CGG - chr2_1:51220660-51220679 None:intergenic 40.0%
TTTGAGCAAGCAACAATGAG+AGG + chr2_1:51220660-51220679 Msa0210840:exon 40.0%
TTGAGCAAGCAACAATGAGA+GGG + chr2_1:51220661-51220680 Msa0210840:exon 40.0%
GAAACACCAATGTCAATGTG+TGG - chr2_1:51220720-51220739 None:intergenic 40.0%
TGAAGTGAAGTTGGAGAGAA+TGG - chr2_1:51220813-51220832 None:intergenic 40.0%
ATGATGTGGCTGTTGATGTT+GGG - chr2_1:51220838-51220857 None:intergenic 40.0%
TTGTCGTACGAGAAGAATCA+AGG - chr2_1:51220974-51220993 None:intergenic 40.0%
ACTTTGTAAGCATGCTTAGG+CGG + chr2_1:51221389-51221408 Msa0210840:intron 40.0%
AACCTCCAACACCTTAATTG+AGG - chr2_1:51221426-51221445 None:intergenic 40.0%
TGCGAATTCCACCTTAATTG+AGG - chr2_1:51221494-51221513 None:intergenic 40.0%
GTATTAATCTCGTTCTTGGG+CGG + chr2_1:51221527-51221546 Msa0210840:intron 40.0%
CTGTGAGAAAATGTAAGCAG+AGG + chr2_1:51221577-51221596 Msa0210840:intron 40.0%
CTAGACTGTGATCCTTTGAT+GGG + chr2_1:51221743-51221762 Msa0210840:intron 40.0%
TGTATTCACTGTGTGATTGG+GGG - chr2_1:51221787-51221806 None:intergenic 40.0%
CATTATGTCAACGGGGTTAA+AGG - chr2_1:51222068-51222087 None:intergenic 40.0%
TTACCAGCCATTGTTCCAAA+AGG + chr2_1:51222335-51222354 Msa0210840:CDS 40.0%
!!! AATGGGACCTTTTGGAACAA+TGG - chr2_1:51222345-51222364 None:intergenic 40.0%
! AAGATAGCAATGGGACCTTT+TGG - chr2_1:51222353-51222372 None:intergenic 40.0%
AAAGGTCCCATTGCTATCTT+AGG + chr2_1:51222353-51222372 Msa0210840:CDS 40.0%
TCCCATTGCTATCTTAGGTT+TGG + chr2_1:51222358-51222377 Msa0210840:CDS 40.0%
CTCATCTGATGCTTGAATTG+TGG + chr2_1:51222510-51222529 Msa0210840:CDS 40.0%
ACTGACGCATCAAATAGTTC+AGG - chr2_1:51222628-51222647 None:intergenic 40.0%
CAAATTGTCCACTAGTGCTT+TGG + chr2_1:51222852-51222871 Msa0210840:intron 40.0%
! CTCAAATTCCAAAGCACTAG+TGG - chr2_1:51222863-51222882 None:intergenic 40.0%
!! AAACAGAAGAAAAAGGCACC+TGG - chr2_1:51223059-51223078 None:intergenic 40.0%
AAGTGAGAACATCCGCATTA+TGG - chr2_1:51223174-51223193 None:intergenic 40.0%
CTGGAGAAGACAAACAAAGA+TGG + chr2_1:51223273-51223292 Msa0210840:intron 40.0%
GAGAAGACAAACAAAGATGG+CGG + chr2_1:51223276-51223295 Msa0210840:intron 40.0%
CAAATCCTCTGATGGAATGA+AGG - chr2_1:51223328-51223347 None:intergenic 40.0%
GATTTGCACAGAAGATATGC+CGG + chr2_1:51223342-51223361 Msa0210840:intron 40.0%
TTAAAAACACAAGCCCCGTT+TGG - chr2_1:51223456-51223475 None:intergenic 40.0%
! TTGGTTAGCTAGTTAGGTAG+GGG - chr2_1:51223485-51223504 None:intergenic 40.0%
! GATTGGTTAGCTAGTTAGGT+AGG - chr2_1:51223487-51223506 None:intergenic 40.0%
TCCGCCACATCTTAACATAA+TGG + chr2_1:51223538-51223557 Msa0210840:intron 40.0%
TGCATCATTGAATGGTTGAG+TGG + chr2_1:51223594-51223613 Msa0210840:intron 40.0%
AACAAGTCAACCACAATTCC+TGG - chr2_1:51223745-51223764 None:intergenic 40.0%
TGGCTTATAGCTGAGTTACT+AGG - chr2_1:51223963-51223982 None:intergenic 40.0%
ATGTAGAAAGCTCACATGAG+AGG + chr2_1:51224154-51224173 Msa0210840:intron 40.0%
! GGATCCAAATCTGAGGTTAA+TGG + chr2_1:51224175-51224194 Msa0210840:intron 40.0%
! TCTGATGACTATCTAGAGTC+TGG - chr2_1:51224216-51224235 None:intergenic 40.0%
GCATAATTCCACTACTACAG+TGG + chr2_1:51224294-51224313 Msa0210840:intron 40.0%
TGTAACTTCCACTGTAGTAG+TGG - chr2_1:51224305-51224324 None:intergenic 40.0%
TAAAAGCTCATAGGATAGGG+GGG - chr2_1:51224452-51224471 None:intergenic 40.0%
! AACTTTTATCATCGCAGGCA+TGG + chr2_1:51224795-51224814 Msa0210840:intron 40.0%
TTGTCTGACAGGTTAGTACT+TGG + chr2_1:51224844-51224863 Msa0210840:intron 40.0%
! CATGATAGATTGATGGCCAA+TGG + chr2_1:51224876-51224895 Msa0210840:CDS 40.0%
GTTCACCATAAAACGACCAT+TGG - chr2_1:51224895-51224914 None:intergenic 40.0%
! GCATTATCCAAAGCATTTCC+TGG + chr2_1:51225002-51225021 Msa0210840:CDS 40.0%
TACTTGTCCAGGAAATGCTT+TGG - chr2_1:51225012-51225031 None:intergenic 40.0%
AAATAGACGCTTACTTGTCC+AGG - chr2_1:51225023-51225042 None:intergenic 40.0%
TCAATGTCAAATATCGGCCA+TGG + chr2_1:51225443-51225462 Msa0210840:intron 40.0%
!!! GTCTTTTTGGGACGTTTTAC+CGG - chr2_1:51225668-51225687 None:intergenic 40.0%
ATGTTGGAAGAGAATGCCAA+AGG + chr2_1:51225895-51225914 Msa0210840:CDS 40.0%
GAAGAGAATGCCAAAGGAAA+CGG + chr2_1:51225901-51225920 Msa0210840:CDS 40.0%
AAGAGAATGCCAAAGGAAAC+GGG + chr2_1:51225902-51225921 Msa0210840:CDS 40.0%
AAATTCTCACCCGTTTCCTT+TGG - chr2_1:51225914-51225933 None:intergenic 40.0%
! GGAAACGGGTGAGAATTTTA+TGG + chr2_1:51225916-51225935 Msa0210840:CDS 40.0%
! GCAGACCAAGATTTTAGATC+AGG - chr2_1:51225959-51225978 None:intergenic 40.0%
TTGGATGTTTCAATTGCCCA+TGG - chr2_1:51226315-51226334 None:intergenic 40.0%
GCCATTAGATGTTGATGCAA+TGG - chr2_1:51226349-51226368 None:intergenic 40.0%
TGCATCAACATCTAATGGCT+AGG - chr2_1:51226350-51226369 None:intergenic 40.0%
TGTTGGGCATGAAGTGAAGT+TGG - chr2_1:51220822-51220841 None:intergenic 45.0%
CATGATGTGGCTGTTGATGT+TGG - chr2_1:51220839-51220858 None:intergenic 45.0%
! TACAAAGTTTGGAGTCGAGC+CGG - chr2_1:51221377-51221396 None:intergenic 45.0%
!! GACCTCAATTAAGGTGTTGG+AGG + chr2_1:51221421-51221440 Msa0210840:intron 45.0%
! GGTGTTGGAGGTTGTATTGA+AGG + chr2_1:51221433-51221452 Msa0210840:intron 45.0%
GCTAGACTGTGATCCTTTGA+TGG + chr2_1:51221742-51221761 Msa0210840:intron 45.0%
TGTGATCCTTTGATGGGATC+AGG + chr2_1:51221749-51221768 Msa0210840:intron 45.0%
CATCATCCTGATCCCATCAA+AGG - chr2_1:51221758-51221777 None:intergenic 45.0%
CTTTGATGGGATCAGGATGA+TGG + chr2_1:51221756-51221775 Msa0210840:intron 45.0%
TCTGATGCTTGAATTGTGGC+CGG + chr2_1:51222514-51222533 Msa0210840:CDS 45.0%
GACGCATCAAATAGTTCAGG+TGG - chr2_1:51222625-51222644 None:intergenic 45.0%
TGATGCCTTCATTCCATCAG+AGG + chr2_1:51223320-51223339 Msa0210840:intron 45.0%
CTTCTGTGCAAATCCTCTGA+TGG - chr2_1:51223336-51223355 None:intergenic 45.0%
ACGGTGAAGCACAATTCAAC+TGG + chr2_1:51223562-51223581 Msa0210840:intron 45.0%
!! GTGGTTGACTTGTTCTCTGA+CGG + chr2_1:51223751-51223770 Msa0210840:CDS 45.0%
! AGTTTTACCTCAGCTGCAAG+AGG + chr2_1:51223777-51223796 Msa0210840:CDS 45.0%
AAACATACCTCTTGCAGCTG+AGG - chr2_1:51223787-51223806 None:intergenic 45.0%
CATGAGAGGATCCAAATCTG+AGG + chr2_1:51224168-51224187 Msa0210840:intron 45.0%
AAAAGCTCATAGGATAGGGG+GGG - chr2_1:51224451-51224470 None:intergenic 45.0%
CTGACAGGTTAGTACTTGGT+TGG + chr2_1:51224848-51224867 Msa0210840:intron 45.0%
!! GATGGCCAATGGTCGTTTTA+TGG + chr2_1:51224887-51224906 Msa0210840:CDS 45.0%
!! GGTCGTTTTATGGTGAACTG+CGG + chr2_1:51224897-51224916 Msa0210840:CDS 45.0%
!! GCATATAAGAGCACTCATGC+AGG + chr2_1:51225226-51225245 Msa0210840:intron 45.0%
GGCGTCATCATATCGGATTA+TGG - chr2_1:51225548-51225567 None:intergenic 45.0%
GCTTTGTGGCGTCATCATAT+CGG - chr2_1:51225555-51225574 None:intergenic 45.0%
! GATATGATGACGCCACAAAG+CGG + chr2_1:51225554-51225573 Msa0210840:intron 45.0%
CTCCTGTGCTTAAAGGAGAT+GGG - chr2_1:51225988-51226007 None:intergenic 45.0%
ACTCCTGTGCTTAAAGGAGA+TGG - chr2_1:51225989-51226008 None:intergenic 45.0%
TCCTTTAAGCACAGGAGTGA+TGG + chr2_1:51225991-51226010 Msa0210840:CDS 45.0%
TCCATCACTCCTGTGCTTAA+AGG - chr2_1:51225995-51226014 None:intergenic 45.0%
!! TAAGCACAGGAGTGATGGAT+TGG + chr2_1:51225996-51226015 Msa0210840:CDS 45.0%
AAGCATGCTTAGGCGGCTTT+CGG + chr2_1:51221396-51221415 Msa0210840:intron 50.0%
CTTTCGGCGGACCTCAATTA+AGG + chr2_1:51221412-51221431 Msa0210840:intron 50.0%
GCGGACCTCAATTAAGGTGT+TGG + chr2_1:51221418-51221437 Msa0210840:intron 50.0%
GGTAACCCACATGCGCAATT+AGG + chr2_1:51221454-51221473 Msa0210840:intron 50.0%
AACCCACATGCGCAATTAGG+CGG + chr2_1:51221457-51221476 Msa0210840:intron 50.0%
ATGCGCAATTAGGCGGCTTT+GGG + chr2_1:51221464-51221483 Msa0210840:intron 50.0%
CTTTGGGCGGACCTCAATTA+AGG + chr2_1:51221480-51221499 Msa0210840:intron 50.0%
GCAGCTGTAACAGCTTCTCA+CGG - chr2_1:51221693-51221712 None:intergenic 50.0%
TGGAACAATGGCTGGTAAGC+TGG - chr2_1:51222333-51222352 None:intergenic 50.0%
!!! GGACCTTTTGGAACAATGGC+TGG - chr2_1:51222341-51222360 None:intergenic 50.0%
! CGTTTTATGGTGAACTGCGG+CGG + chr2_1:51224900-51224919 Msa0210840:CDS 50.0%
! GTTTTATGGTGAACTGCGGC+GGG + chr2_1:51224901-51224920 Msa0210840:CDS 50.0%
GAGCCAAAATCCTGCCATTC+CGG - chr2_1:51225580-51225599 None:intergenic 50.0%
CAAAAGGACTAATGGGAGCG+AGG - chr2_1:51225630-51225649 None:intergenic 50.0%
! CTCGCTCCCATTAGTCCTTT+TGG + chr2_1:51225628-51225647 Msa0210840:intron 50.0%
GTCCCATCTCCTTTAAGCAC+AGG + chr2_1:51225983-51226002 Msa0210840:CDS 50.0%
!! GGAGTCGAGCCGGTTTTGTA+GGG - chr2_1:51221367-51221386 None:intergenic 55.0%
!! TGGAGTCGAGCCGGTTTTGT+AGG - chr2_1:51221368-51221387 None:intergenic 55.0%
AGCCGCCTAATTGCGCATGT+GGG - chr2_1:51221462-51221481 None:intergenic 55.0%
AAGCCGCCTAATTGCGCATG+TGG - chr2_1:51221463-51221482 None:intergenic 55.0%
CATGCGCAATTAGGCGGCTT+TGG + chr2_1:51221463-51221482 Msa0210840:intron 55.0%
TGGGCGGACCTCAATTAAGG+TGG + chr2_1:51221483-51221502 Msa0210840:intron 55.0%
TCACTGTGTGATTGGGGGCT+TGG - chr2_1:51221782-51221801 None:intergenic 55.0%
!! CAGCCTTCGAGTTGCAATGC+CGG - chr2_1:51222536-51222555 None:intergenic 55.0%
GGCATTGCAACTCGAAGGCT+GGG + chr2_1:51222535-51222554 Msa0210840:CDS 55.0%
! AGCTAGTTAGGTAGGGGCAC+TGG - chr2_1:51223479-51223498 None:intergenic 55.0%
GGTTGAGTGGACCACGTGAA+TGG + chr2_1:51223607-51223626 Msa0210840:intron 55.0%
! AGCACCTTGGCGGATATTGG+TGG + chr2_1:51225467-51225486 Msa0210840:intron 55.0%
! ACCTTGGCGGATATTGGTGG+TGG + chr2_1:51225470-51225489 Msa0210840:intron 55.0%
TCGGCTGAAATTGGGCATGG+CGG - chr2_1:51225508-51225527 None:intergenic 55.0%
!! GTGTCGGCTGAAATTGGGCA+TGG - chr2_1:51225511-51225530 None:intergenic 55.0%
!! CCGACGTGTCGGCTGAAATT+GGG - chr2_1:51225516-51225535 None:intergenic 55.0%
CCCAATTTCAGCCGACACGT+CGG + chr2_1:51225513-51225532 Msa0210840:intron 55.0%
CCAATTTCAGCCGACACGTC+GGG + chr2_1:51225514-51225533 Msa0210840:intron 55.0%
! AGCCGACACGTCGGGATTTT+CGG + chr2_1:51225522-51225541 Msa0210840:intron 55.0%
CACGGCGAACACCTCGTTTA+CGG + chr2_1:51226478-51226497 Msa0210840:three_prime_UTR 55.0%
GGACTGACAGTCCGTAAACG+AGG - chr2_1:51226492-51226511 None:intergenic 55.0%
CATGCTTAGGCGGCTTTCGG+CGG + chr2_1:51221399-51221418 Msa0210840:intron 60.0%
!! CGCAATTAGGCGGCTTTGGG+CGG + chr2_1:51221467-51221486 Msa0210840:intron 60.0%
TGGCCGGCATTGCAACTCGA+AGG + chr2_1:51222530-51222549 Msa0210840:CDS 60.0%
CGGCATTGCAACTCGAAGGC+TGG + chr2_1:51222534-51222553 Msa0210840:CDS 60.0%
TGAACTGCGGCGGGATCGAT+GGG + chr2_1:51224910-51224929 Msa0210840:CDS 60.0%
TATCGGCCATGGCAGCACCT+TGG + chr2_1:51225454-51225473 Msa0210840:intron 60.0%
!! TATCCGCCAAGGTGCTGCCA+TGG - chr2_1:51225463-51225482 None:intergenic 60.0%
! GGCAGCACCTTGGCGGATAT+TGG + chr2_1:51225464-51225483 Msa0210840:intron 60.0%
GCCACCACCAATATCCGCCA+AGG - chr2_1:51225474-51225493 None:intergenic 60.0%
!! CCCGACGTGTCGGCTGAAAT+TGG - chr2_1:51225517-51225536 None:intergenic 60.0%
GGCCGAAAATCCCGACGTGT+CGG - chr2_1:51225527-51225546 None:intergenic 60.0%
! TGATGACGCCACAAAGCGGC+CGG + chr2_1:51225558-51225577 Msa0210840:intron 60.0%
! CGGCCGGAATGGCAGGATTT+TGG + chr2_1:51225574-51225593 Msa0210840:intron 60.0%
GTGAACTGCGGCGGGATCGA+TGG + chr2_1:51224909-51224928 Msa0210840:CDS 65.0%
GAACTGCGGCGGGATCGATG+GGG + chr2_1:51224911-51224930 Msa0210840:CDS 65.0%
ACGCCACAAAGCGGCCGGAA+TGG + chr2_1:51225563-51225582 Msa0210840:intron 65.0%
! CTGCCATTCCGGCCGCTTTG+TGG - chr2_1:51225569-51225588 None:intergenic 65.0%
CACAAAGCGGCCGGAATGGC+AGG + chr2_1:51225567-51225586 Msa0210840:intron 65.0%
GGCGGGATCGATGGGGTGGA+TGG + chr2_1:51224918-51224937 Msa0210840:CDS 70.0%
CGGCCATGGCAGCACCTTGG+CGG + chr2_1:51225457-51225476 Msa0210840:intron 70.0%
CTGCGGCGGGATCGATGGGG+TGG + chr2_1:51224914-51224933 Msa0210840:CDS 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 51220608 51226523 51220608 ID=Msa0210840;Name=Msa0210840
chr2_1 mRNA 51220608 51226523 51220608 ID=Msa0210840-mRNA-1;Parent=Msa0210840;Name=Msa0210840-mRNA-1;_AED=0.23;_eAED=0.23;_QI=67|0.85|0.87|1|0.71|0.62|8|276|303
chr2_1 exon 51220608 51220984 51220608 ID=Msa0210840-mRNA-1:exon:14287;Parent=Msa0210840-mRNA-1
chr2_1 exon 51221081 51221133 51221081 ID=Msa0210840-mRNA-1:exon:14288;Parent=Msa0210840-mRNA-1
chr2_1 exon 51222320 51222379 51222320 ID=Msa0210840-mRNA-1:exon:14289;Parent=Msa0210840-mRNA-1
chr2_1 exon 51222494 51222571 51222494 ID=Msa0210840-mRNA-1:exon:14290;Parent=Msa0210840-mRNA-1
chr2_1 exon 51223718 51223798 51223718 ID=Msa0210840-mRNA-1:exon:14291;Parent=Msa0210840-mRNA-1
chr2_1 exon 51224855 51225028 51224855 ID=Msa0210840-mRNA-1:exon:14292;Parent=Msa0210840-mRNA-1
chr2_1 exon 51225893 51226215 51225893 ID=Msa0210840-mRNA-1:exon:14293;Parent=Msa0210840-mRNA-1
chr2_1 exon 51226415 51226523 51226415 ID=Msa0210840-mRNA-1:exon:14294;Parent=Msa0210840-mRNA-1
chr2_1 five_prime_UTR 51220608 51220674 51220608 ID=Msa0210840-mRNA-1:five_prime_utr;Parent=Msa0210840-mRNA-1
chr2_1 CDS 51220675 51220984 51220675 ID=Msa0210840-mRNA-1:cds;Parent=Msa0210840-mRNA-1
chr2_1 CDS 51221081 51221133 51221081 ID=Msa0210840-mRNA-1:cds;Parent=Msa0210840-mRNA-1
chr2_1 CDS 51222320 51222379 51222320 ID=Msa0210840-mRNA-1:cds;Parent=Msa0210840-mRNA-1
chr2_1 CDS 51222494 51222571 51222494 ID=Msa0210840-mRNA-1:cds;Parent=Msa0210840-mRNA-1
chr2_1 CDS 51223718 51223798 51223718 ID=Msa0210840-mRNA-1:cds;Parent=Msa0210840-mRNA-1
chr2_1 CDS 51224855 51225028 51224855 ID=Msa0210840-mRNA-1:cds;Parent=Msa0210840-mRNA-1
chr2_1 CDS 51225893 51226048 51225893 ID=Msa0210840-mRNA-1:cds;Parent=Msa0210840-mRNA-1
chr2_1 three_prime_UTR 51226049 51226215 51226049 ID=Msa0210840-mRNA-1:three_prime_utr;Parent=Msa0210840-mRNA-1
chr2_1 three_prime_UTR 51226415 51226523 51226415 ID=Msa0210840-mRNA-1:three_prime_utr;Parent=Msa0210840-mRNA-1
Gene Sequence

>Msa0210840

ATGAGAGGGTGCTGCTGCGTATTGCCATTTAGTTTTAGTTTTCCACACATTGACATTGGTGTTTCTTATTCTCAACATTCTTTCACTATTCACACCCCAACACCAAAATCAATACTCTCCTCTATCCATAATCATCCATTCTCTCCAACTTCACTTCATGCCCAACATCAACAGCCACATCATGATCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGCTTTCAAATTCTAACATCTGTTAAAACTGATTACAATCATATCATGATTGTTGATACCCCTAAATCTACTATGCTTCTCCTTGATTCTTCTCATAATGTTCATAGCATTCTTTATAAGGACAAAAAGTGGACTAATTCCTACTGGGATGAGTTTGCCAGCTTACCAGCCATTGTTCCAAAAGGTCCCATTGCTATCTTAGGTTTGGGTGGTGGAACTGCTGCTCATCTGATGCTTGAATTGTGGCCGGCATTGCAACTCGAAGGCTGGGAGATTGATGACATTCTAACTTATACATGTGAACAATTTCCAGGAATTGTGGTTGACTTGTTCTCTGACGGAAAAGTTTTACCTCAGCTGCAAGAGGTTAGTACTTGGTTGGAATTACATGATAGATTGATGGCCAATGGTCGTTTTATGGTGAACTGCGGCGGGATCGATGGGGTGGATGGAAGTACTGATCCAAAAAAATTATCAAATGACGAGGCATGGTTATTAAATGCTGCAATCAAAGCATTATCCAAAGCATTTCCTGGACAACTATGTTGGAAGAGAATGCCAAAGGAAACGGGTGAGAATTTTATGGCACTTACAGGACCCTTACCTGATCTAAAATCTTGGTCTGCTAATGTCCCATCTCCTTTAAGCACAGGAGTGATGGATTGGAGACCTTGTGAAATAGTTTCTAGAATTTGA

Protein sequence

>Msa0210840

MRGCCCVLPFSFSFPHIDIGVSYSQHSFTIHTPTPKSILSSIHNHPFSPTSLHAQHQQPHHDQEEEEEEEEESFQILTSVKTDYNHIMIVDTPKSTMLLLDSSHNVHSILYKDKKWTNSYWDEFASLPAIVPKGPIAILGLGGGTAAHLMLELWPALQLEGWEIDDILTYTCEQFPGIVVDLFSDGKVLPQLQEVSTWLELHDRLMANGRFMVNCGGIDGVDGSTDPKKLSNDEAWLLNAAIKALSKAFPGQLCWKRMPKETGENFMALTGPLPDLKSWSANVPSPLSTGVMDWRPCEIVSRI*