AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0792860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792860 MtrunA17_Chr7g0236861 93.600 375 22 1 1 373 1 375 0.0 686
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792860 AT4G13150.1 62.025 316 109 2 56 371 39 343 2.18e-136 393
Msa0792860 AT4G13150.3 56.809 257 100 2 56 312 39 284 9.59e-98 292
Msa0792860 AT4G13150.2 57.661 248 94 2 56 303 39 275 4.12e-96 288
Msa0792860 AT4G13150.5 55.459 229 91 2 56 284 39 256 1.69e-83 255
Msa0792860 AT4G13150.4 55.459 229 91 2 56 284 39 256 1.69e-83 255

Find 102 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGAAGAGGCTTTAAATATT+TGG 0.131301 5_3:-4628880 Msa0792860:CDS
CAACGGTTCTATGGGTTTAT+TGG 0.170728 5_3:-4628634 Msa0792860:intron
CTCATAGATTGTTTGCAAAT+TGG 0.184876 5_3:-4631572 Msa0792860:CDS
CAAAAGTATGGCAACCTTAT+TGG 0.194977 5_3:-4627989 Msa0792860:CDS
GAAAAGCTTCCCCAAGTAAA+AGG 0.226285 5_3:+4628476 None:intergenic
GATCTACTTCTGGTTGCTTA+TGG 0.241388 5_3:-4628927 Msa0792860:CDS
ACATCATATCAACGGTTCTA+TGG 0.246088 5_3:-4628643 Msa0792860:CDS
CGTCGACCAATTTCTGTTAT+AGG 0.247466 5_3:-4626827 Msa0792860:three_prime_UTR
TCTGTTCACACTTTCCATTC+AGG 0.270300 5_3:-4627315 Msa0792860:intron
CGAAGAGGCTTTAAATATTT+GGG 0.285377 5_3:-4628879 Msa0792860:intron
TCATTACCTATAACAGAAAT+TGG 0.298937 5_3:+4626821 None:intergenic
CCTGCAGATGGATCTACTTC+TGG 0.300381 5_3:-4628937 Msa0792860:intron
ATTCGCCAACAGCCTATTCT+AGG 0.301647 5_3:-4629599 Msa0792860:CDS
CACACGTTTCTCACCTCTTC+AGG 0.323077 5_3:-4631539 Msa0792860:intron
TATGGCAACCTTATTGGTTT+CGG 0.337774 5_3:-4627983 Msa0792860:intron
GAACCCTAGACTCGTATATA+TGG 0.345440 5_3:+4626777 None:intergenic
ACAGATGTTGTACAAAAGTA+TGG 0.345611 5_3:-4628001 Msa0792860:CDS
ATATGTGATCAGCTTGGAAT+AGG 0.354232 5_3:-4627179 Msa0792860:intron
TCATCATCAATGTCACTTAC+AGG 0.357041 5_3:-4631732 Msa0792860:five_prime_UTR
TCACGTTATTATTACCATTA+CGG 0.360639 5_3:+4627109 None:intergenic
TTCTGGTTGCTTATGGCTGC+AGG 0.373324 5_3:-4628920 Msa0792860:CDS
TTACGAGGCGTTAAAATCTA+AGG 0.373703 5_3:-4629753 Msa0792860:CDS
TTGCTTATGGCTGCAGGTTG+TGG 0.377069 5_3:-4628914 Msa0792860:CDS
ATTAATAATAAATCCCTTTG+TGG 0.377140 5_3:-4626718 Msa0792860:three_prime_UTR
GTTGAAGCAGCCACAGCATA+TGG 0.393534 5_3:+4627001 None:intergenic
GGATAAACTACAAATTGTTA+TGG 0.396660 5_3:-4626648 Msa0792860:three_prime_UTR
TGTTCTACAACCTCTGAGAT+TGG 0.400138 5_3:+4631635 None:intergenic
GTTATGGAGTTTGTCTGAAT+AGG 0.407385 5_3:-4626632 Msa0792860:three_prime_UTR
CGAGCTTACCGAAACCAATA+AGG 0.407499 5_3:+4627975 None:intergenic
GAAGATGATAGGTTGGAATA+AGG 0.411006 5_3:+4631756 None:intergenic
TAAGACGGAGATTCCATTCC+TGG 0.412282 5_3:-4629672 Msa0792860:CDS
GCAGTTACTCCCGTTGCTGC+TGG 0.414466 5_3:-4629530 Msa0792860:CDS
GTGCTTCATATTCACCTGAA+TGG 0.419254 5_3:+4627301 None:intergenic
TAAGGTGAGTATGATGATAT+TGG 0.450953 5_3:+4631774 None:intergenic
ACAACCTCTGAGATTGGTTG+TGG 0.451788 5_3:+4631641 None:intergenic
CAATTTGCAAACAATCTATG+AGG 0.453989 5_3:+4631573 None:intergenic
CTTATACAGGACAGGATTCA+AGG 0.461919 5_3:+4626937 None:intergenic
TATTCTGAACACTCTTATAC+AGG 0.464945 5_3:+4626924 None:intergenic
CATCTGCTGATGTTACTTCA+AGG 0.466645 5_3:-4628440 Msa0792860:CDS
ACAGGTGTTAAAGACATTGT+TGG 0.473589 5_3:+4631693 None:intergenic
GCTATGATTTCAATTGCGTT+AGG 0.476889 5_3:-4629650 Msa0792860:CDS
ATATCGGCCGTTCCCTCAAA+AGG 0.477162 5_3:+4627153 None:intergenic
TCAAGTGCAGGGTATTTCTC+CGG 0.480432 5_3:-4627369 Msa0792860:intron
AAAGTGAAACCAGCAGCAAC+GGG 0.486127 5_3:+4629521 None:intergenic
CATCATATCAACGGTTCTAT+GGG 0.486887 5_3:-4628642 Msa0792860:CDS
ATAATTCCGCAATGTGCACC+AGG 0.498074 5_3:-4629476 Msa0792860:CDS
GCAGTTGAACGATTCTCTCT+CGG 0.501634 5_3:-4627857 Msa0792860:intron
ATACATTCAAGTACCACAAA+GGG 0.502502 5_3:+4626705 None:intergenic
CTTATCTGCATATACAACTT+AGG 0.502539 5_3:+4626895 None:intergenic
AGAATTGAGGTGCAAGCAAA+TGG 0.504114 5_3:-4629710 Msa0792860:CDS
TGCTACTGTCGCAACCGTAA+TGG 0.508904 5_3:-4627123 Msa0792860:intron
AATGGCCCACATGAGAAAAC+AGG 0.510367 5_3:+4631675 None:intergenic
TTCTGTCTCTCGACGGAACA+TGG 0.512776 5_3:-4628703 Msa0792860:CDS
AAAAGCTTCCCCAAGTAAAA+GGG 0.514440 5_3:+4628477 None:intergenic
TAGGTAATGATCAATTACTA+TGG 0.514521 5_3:-4626808 Msa0792860:three_prime_UTR
TGAACACTCTTATACAGGAC+AGG 0.518466 5_3:+4626929 None:intergenic
CCGGACGGTGATCCTAGAAT+AGG 0.519118 5_3:+4629587 None:intergenic
CTAAACAGTCTAACAGTGAC+AGG 0.521851 5_3:+4631609 None:intergenic
GGCTTGTTTAATATTTCTTG+AGG 0.523043 5_3:-4626669 Msa0792860:three_prime_UTR
TTAGCCATATATACGAGTCT+AGG 0.525630 5_3:-4626781 Msa0792860:three_prime_UTR
TTGATGATGATGAAGATGAT+AGG 0.526847 5_3:+4631745 None:intergenic
GTGCAAGCAAATGGTGAAGA+GGG 0.527384 5_3:-4629701 Msa0792860:CDS
GAAAGTGAAACCAGCAGCAA+CGG 0.532219 5_3:+4629520 None:intergenic
TGATGATGAAGATGATAGGT+TGG 0.536995 5_3:+4631749 None:intergenic
ACAGTAGCAAGAGCAAATAT+CGG 0.537808 5_3:+4627137 None:intergenic
CATTTGCTGAATCTTTCTCA+AGG 0.539846 5_3:-4628676 Msa0792860:CDS
TAGCCATATATACGAGTCTA+GGG 0.546423 5_3:-4626780 Msa0792860:three_prime_UTR
ATTGAAATCATAGCCAGGAA+TGG 0.555455 5_3:+4629659 None:intergenic
CAACCTCTGAGATTGGTTGT+GGG 0.557588 5_3:+4631642 None:intergenic
TTCTGACAGAATCTGCAGAC+CGG 0.560844 5_3:+4629568 None:intergenic
TAGAATAGGCTGTTGGCGAA+TGG 0.565403 5_3:+4629601 None:intergenic
GCTCCTGCAAGAAAAGCTGT+AGG 0.567137 5_3:+4627824 None:intergenic
TGGTATCAATAGTTAGGCAT+TGG 0.567978 5_3:-4628046 Msa0792860:intron
ACGCAATTGAAATCATAGCC+AGG 0.575085 5_3:+4629654 None:intergenic
GAGAAGTTAGTTACCTGAAG+AGG 0.580232 5_3:+4631526 None:intergenic
AACGGGAGTAACTGCTGAAG+AGG 0.581253 5_3:+4629538 None:intergenic
AATTTGCAAACAATCTATGA+GGG 0.586121 5_3:+4631574 None:intergenic
CTCCTGCAAGAAAAGCTGTA+GGG 0.587434 5_3:+4627825 None:intergenic
GTTAGGCATTGGCAAAGAGA+AGG 0.588485 5_3:-4628035 Msa0792860:CDS
GGATGCTATTGTAGCTAATG+TGG 0.597961 5_3:+4629622 None:intergenic
AATACATTCAAGTACCACAA+AGG 0.605788 5_3:+4626704 None:intergenic
ATCTGCTGATGTTACTTCAA+GGG 0.608875 5_3:-4628439 Msa0792860:intron
AGAACCGTTGATATGATGTA+CGG 0.612467 5_3:+4628647 None:intergenic
GACAGAATCTGCAGACCGGA+CGG 0.612560 5_3:+4629572 None:intergenic
GTGATCCTAGAATAGGCTGT+TGG 0.615355 5_3:+4629594 None:intergenic
ATGCTCTAAACATGAGAGTG+AGG 0.615787 5_3:-4629780 Msa0792860:CDS
AGGTTGGTACATCAATAGCA+AGG 0.617555 5_3:-4628727 Msa0792860:CDS
AGTATGATGATATTGGTGAA+AGG 0.621481 5_3:+4631781 None:intergenic
TGAAGTCTCATCCAACCACA+TGG 0.622921 5_3:-4631818 Msa0792860:five_prime_UTR
CCTATTCTAGGATCACCGTC+CGG 0.623663 5_3:-4629587 Msa0792860:CDS
GGTGCAAGCAAATGGTGAAG+AGG 0.626766 5_3:-4629702 Msa0792860:CDS
GGTCTGCAGATTCTGTCAGA+AGG 0.635667 5_3:-4629566 Msa0792860:CDS
TGAAGAGGGGCATAATAAGA+CGG 0.644840 5_3:-4629687 Msa0792860:CDS
AGATACACAAGATAGAATTG+AGG 0.647008 5_3:-4629723 Msa0792860:CDS
TGCTCCGTACATCATATCAA+CGG 0.649745 5_3:-4628651 Msa0792860:CDS
GCAAGGCTTCTGTCTCTCGA+CGG 0.653198 5_3:-4628710 Msa0792860:CDS
GTGTACCCTGGTGCACATTG+CGG 0.656514 5_3:+4629470 None:intergenic
GTTGTGGGAATGTTTAACAA+TGG 0.662238 5_3:+4631657 None:intergenic
TGCAAGCAAATGGTGAAGAG+GGG 0.662417 5_3:-4629700 Msa0792860:CDS
TAATTCCGCAATGTGCACCA+GGG 0.731402 5_3:-4629475 Msa0792860:intron
ATTCCCACAACCAATCTCAG+AGG 0.733978 5_3:-4631645 Msa0792860:CDS
TGAGAGTGAGGAAAATTACG+AGG 0.744639 5_3:-4629768 Msa0792860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATCTTTTAAGATATTTATT+AGG - chr5_3:4629617-4629636 Msa0792860:CDS 10.0%
!! TAACTTTATCTAATATAAAA+GGG + chr5_3:4630589-4630608 None:intergenic 10.0%
!!! AATTTTTTTTTTTATCTACA+AGG - chr5_3:4631116-4631135 Msa0792860:intron 10.0%
!! GAATGTATTAAATAAAAAAT+TGG - chr5_3:4631674-4631693 Msa0792860:CDS 10.0%
!!! CTATATGTTTTATTTATGTA+TGG - chr5_3:4628382-4628401 Msa0792860:intron 15.0%
!!! TTTTAAGATATTTATTAGGT+TGG - chr5_3:4629621-4629640 Msa0792860:CDS 15.0%
!! CTAACTTTATCTAATATAAA+AGG + chr5_3:4630590-4630609 None:intergenic 15.0%
!!! CTTTTATATTAGATAAAGTT+AGG - chr5_3:4630588-4630607 Msa0792860:intron 15.0%
!!! ATTTTGTTTAAAAAAAGACT+TGG - chr5_3:4630942-4630961 Msa0792860:intron 15.0%
!! CAATTATTATCCATATAAAA+GGG + chr5_3:4630968-4630987 None:intergenic 15.0%
!! ACAATTATTATCCATATAAA+AGG + chr5_3:4630969-4630988 None:intergenic 15.0%
!!! AACATACCTAAATTCTAAAA+TGG - chr5_3:4626989-4627008 Msa0792860:CDS 20.0%
!!! TTGATACCATTTTAGAATTT+AGG + chr5_3:4626998-4627017 None:intergenic 20.0%
!! TTTCAAATTATTAGCAATGT+CGG - chr5_3:4627110-4627129 Msa0792860:intron 20.0%
!! AAAAATCTCAGAATTAACTT+AGG + chr5_3:4627309-4627328 None:intergenic 20.0%
!!! AACTTTAAGTTTGAAATTCT+AGG - chr5_3:4628344-4628363 Msa0792860:intron 20.0%
!!! AGTTACATCATTTTTATTTC+CGG - chr5_3:4628989-4629008 Msa0792860:intron 20.0%
!!! ACTGTTTTGTTGTTAATTAT+AGG - chr5_3:4629257-4629276 Msa0792860:intron 20.0%
!!! TTTAGTTCAGATTTATACAT+TGG - chr5_3:4629986-4630005 Msa0792860:intron 20.0%
!! CCAAAAATATTCATGAAAAA+AGG + chr5_3:4630298-4630317 None:intergenic 20.0%
!!! CCTTTTTTCATGAATATTTT+TGG - chr5_3:4630295-4630314 Msa0792860:intron 20.0%
!!! TTTTTCATGAATATTTTTGG+TGG - chr5_3:4630298-4630317 Msa0792860:intron 20.0%
!! TTATATTAGATAAAGTTAGG+TGG - chr5_3:4630591-4630610 Msa0792860:intron 20.0%
!! TAAAAGAAATCACATTAAGA+AGG - chr5_3:4630624-4630643 Msa0792860:intron 20.0%
!!! CAATTTTCAAAAGTTCTTTT+AGG - chr5_3:4630732-4630751 Msa0792860:intron 20.0%
!! TGAACTTCTAATAGAAAATT+TGG - chr5_3:4630836-4630855 Msa0792860:intron 20.0%
!!! TTACCTTTTTTGTTTTATAC+AGG - chr5_3:4631323-4631342 Msa0792860:intron 20.0%
!!! TACCTTTTTTGTTTTATACA+GGG - chr5_3:4631324-4631343 Msa0792860:intron 20.0%
!! ATTAATAATAAATCCCTTTG+TGG - chr5_3:4631646-4631665 Msa0792860:CDS 20.0%
! AATTTGCAAACAATCTATGA+GGG + chr5_3:4626793-4626812 None:intergenic 25.0%
! CATGTAGAAATGTTTATAAG+TGG - chr5_3:4626929-4626948 Msa0792860:three_prime_UTR 25.0%
! TTCAGTGTAATTATATGTGT+CGG + chr5_3:4627080-4627099 None:intergenic 25.0%
!!! AATTCTGAGATTTTTCATGT+CGG - chr5_3:4627314-4627333 Msa0792860:intron 25.0%
! ATGAGATTAGTACTCATATT+TGG + chr5_3:4628193-4628212 None:intergenic 25.0%
! ATCAATTACAAACTTTGACT+TGG - chr5_3:4628245-4628264 Msa0792860:intron 25.0%
!! TCAATTACAAACTTTGACTT+GGG - chr5_3:4628246-4628265 Msa0792860:intron 25.0%
!!! AGTTTTTCTAAAACATAGAG+AGG + chr5_3:4628328-4628347 None:intergenic 25.0%
! ATCCAAAAATTCATTCTGAA+GGG + chr5_3:4628455-4628474 None:intergenic 25.0%
! AATCCAAAAATTCATTCTGA+AGG + chr5_3:4628456-4628475 None:intergenic 25.0%
!!! CAGAATGAATTTTTGGATTT+TGG - chr5_3:4628457-4628476 Msa0792860:CDS 25.0%
! TAACAAGGAAATTACTAAGA+GGG + chr5_3:4628483-4628502 None:intergenic 25.0%
! ATAACAAGGAAATTACTAAG+AGG + chr5_3:4628484-4628503 None:intergenic 25.0%
! AGAATCAACTAACAAAGAAA+GGG + chr5_3:4628514-4628533 None:intergenic 25.0%
! TAGAATCAACTAACAAAGAA+AGG + chr5_3:4628515-4628534 None:intergenic 25.0%
!! TTAGTTGATTCTATTGTGTT+CGG - chr5_3:4628522-4628541 Msa0792860:intron 25.0%
! CATATATAGAATAGACAAAG+AGG - chr5_3:4629192-4629211 Msa0792860:intron 25.0%
!! TTTTACTGTTATAGTGACAA+AGG - chr5_3:4629282-4629301 Msa0792860:intron 25.0%
!! ATTATTTTCATAAGCTATCC+TGG + chr5_3:4630136-4630155 None:intergenic 25.0%
!!! GAACTTATATAAAAAGTGCT+TGG - chr5_3:4630199-4630218 Msa0792860:intron 25.0%
! TTCTATTAGAAGTTCATCTA+AGG + chr5_3:4630832-4630851 None:intergenic 25.0%
!!! CCTGTTTTTGTACATATTTT+CGG - chr5_3:4630861-4630880 Msa0792860:intron 25.0%
! CCAAGTTAATTATAGAAATG+TGG + chr5_3:4630898-4630917 None:intergenic 25.0%
! CCACATTTCTATAATTAACT+TGG - chr5_3:4630895-4630914 Msa0792860:intron 25.0%
! TCACGTTATTATTACCATTA+CGG + chr5_3:4631258-4631277 None:intergenic 25.0%
! GTAATGTTTAGTTACATCTT+TGG + chr5_3:4631307-4631326 None:intergenic 25.0%
! TTCCCTGTATAAAACAAAAA+AGG + chr5_3:4631329-4631348 None:intergenic 25.0%
!!! TTTGTTTTATACAGGGAATT+TGG - chr5_3:4631331-4631350 Msa0792860:intron 25.0%
!! CTTTATTCTTTTATGTCAGA+CGG - chr5_3:4631388-4631407 Msa0792860:intron 25.0%
! GATCGAAAAAGTTCAATAAA+TGG + chr5_3:4631507-4631526 None:intergenic 25.0%
! TCATTACCTATAACAGAAAT+TGG + chr5_3:4631546-4631565 None:intergenic 25.0%
! TAGGTAATGATCAATTACTA+TGG - chr5_3:4631556-4631575 Msa0792860:CDS 25.0%
! GGATAAACTACAAATTGTTA+TGG - chr5_3:4631716-4631735 Msa0792860:five_prime_UTR 25.0%
AGTATGATGATATTGGTGAA+AGG + chr5_3:4626586-4626605 None:intergenic 30.0%
TAAGGTGAGTATGATGATAT+TGG + chr5_3:4626593-4626612 None:intergenic 30.0%
!! TTGATGATGATGAAGATGAT+AGG + chr5_3:4626622-4626641 None:intergenic 30.0%
CAATTTGCAAACAATCTATG+AGG + chr5_3:4626794-4626813 None:intergenic 30.0%
CTCATAGATTGTTTGCAAAT+TGG - chr5_3:4626792-4626811 Msa0792860:three_prime_UTR 30.0%
GTAGAAATGTTTATAAGTGG+AGG - chr5_3:4626932-4626951 Msa0792860:three_prime_UTR 30.0%
ACATTGAACATGATATGTGT+AGG - chr5_3:4627234-4627253 Msa0792860:intron 30.0%
CATTGAACATGATATGTGTA+GGG - chr5_3:4627235-4627254 Msa0792860:intron 30.0%
ATTGAACATGATATGTGTAG+GGG - chr5_3:4627236-4627255 Msa0792860:intron 30.0%
CTAATATCTACCACAACATT+TGG + chr5_3:4627371-4627390 None:intergenic 30.0%
ACAGAAACAAAAACAGCAAT+TGG - chr5_3:4627786-4627805 Msa0792860:intron 30.0%
AGAATGCGATTGCATTATAA+GGG - chr5_3:4627814-4627833 Msa0792860:intron 30.0%
!! ACACTCTTTGTTGTTACTAT+GGG + chr5_3:4627976-4627995 None:intergenic 30.0%
AGTATACCATGAAGTTACAA+AGG - chr5_3:4628073-4628092 Msa0792860:intron 30.0%
! ACTCATATTTGGAATTGTTC+TGG + chr5_3:4628182-4628201 None:intergenic 30.0%
ATGAGTACTAATCTCATCTA+TGG - chr5_3:4628196-4628215 Msa0792860:intron 30.0%
!! AATTCTAGGACATATGTTTG+AGG - chr5_3:4628358-4628377 Msa0792860:intron 30.0%
! TACCCTTCAGAATGAATTTT+TGG - chr5_3:4628450-4628469 Msa0792860:CDS 30.0%
AGATACACAAGATAGAATTG+AGG - chr5_3:4628641-4628660 Msa0792860:CDS 30.0%
! GGTTTCACTTTCAAAGTTTT+TGG - chr5_3:4628855-4628874 Msa0792860:intron 30.0%
! TGTCATTTGTTTCAACAGTT+TGG - chr5_3:4628942-4628961 Msa0792860:intron 30.0%
TAGTTATGTTCCTTCAACTT+TGG + chr5_3:4629169-4629188 None:intergenic 30.0%
!! CGAAGAGGCTTTAAATATTT+GGG - chr5_3:4629485-4629504 Msa0792860:CDS 30.0%
! AAACGTGTTTTCATTACAAC+GGG + chr5_3:4629569-4629588 None:intergenic 30.0%
! CAAACGTGTTTTCATTACAA+CGG + chr5_3:4629570-4629589 None:intergenic 30.0%
! GTCACTAATTCAGTAGTTTT+TGG + chr5_3:4629816-4629835 None:intergenic 30.0%
! AATCTGAACTAAACTGATTC+AGG + chr5_3:4629979-4629998 None:intergenic 30.0%
ATTGGAAATTGAATCCATCT+AGG - chr5_3:4630004-4630023 Msa0792860:intron 30.0%
AGACTATTTGAGAGAGATTA+TGG - chr5_3:4630081-4630100 Msa0792860:intron 30.0%
! AGTTTAAGCATTAGAGTGTT+TGG + chr5_3:4630242-4630261 None:intergenic 30.0%
!! TTTTGGTGGTATCAATAGTT+AGG - chr5_3:4630312-4630331 Msa0792860:intron 30.0%
ACAGATGTTGTACAAAAGTA+TGG - chr5_3:4630363-4630382 Msa0792860:intron 30.0%
! TAAGAAGGACTCTTTTAATG+TGG - chr5_3:4630639-4630658 Msa0792860:intron 30.0%
! AAGAAGGACTCTTTTAATGT+GGG - chr5_3:4630640-4630659 Msa0792860:intron 30.0%
TGTTTATTAGTGTCCATGTA+AGG - chr5_3:4630806-4630825 Msa0792860:intron 30.0%
CCGAAAATATGTACAAAAAC+AGG + chr5_3:4630864-4630883 None:intergenic 30.0%
! TTCTATAATTAACTTGGCCA+TGG - chr5_3:4630901-4630920 Msa0792860:intron 30.0%
!! AATTGTTTTTCTTCAAGTGC+AGG - chr5_3:4630983-4631002 Msa0792860:intron 30.0%
!! ATTGTTTTTCTTCAAGTGCA+GGG - chr5_3:4630984-4631003 Msa0792860:intron 30.0%
TATTCTGAACACTCTTATAC+AGG + chr5_3:4631443-4631462 None:intergenic 30.0%
CTTATCTGCATATACAACTT+AGG + chr5_3:4631472-4631491 None:intergenic 30.0%
ATACATTCAAGTACCACAAA+GGG + chr5_3:4631662-4631681 None:intergenic 30.0%
AATACATTCAAGTACCACAA+AGG + chr5_3:4631663-4631682 None:intergenic 30.0%
! GGCTTGTTTAATATTTCTTG+AGG - chr5_3:4631695-4631714 Msa0792860:exon 30.0%
!!! GCTGTTTTGTTAATTTGCTT+TGG - chr5_3:4631757-4631776 Msa0792860:five_prime_UTR 30.0%
! GAAGATGATAGGTTGGAATA+AGG + chr5_3:4626611-4626630 None:intergenic 35.0%
! TGATGATGAAGATGATAGGT+TGG + chr5_3:4626618-4626637 None:intergenic 35.0%
! TCATCATCAATGTCACTTAC+AGG - chr5_3:4626632-4626651 Msa0792860:three_prime_UTR 35.0%
ACAGGTGTTAAAGACATTGT+TGG + chr5_3:4626674-4626693 None:intergenic 35.0%
! TTAACACCTGTTTTCTCATG+TGG - chr5_3:4626683-4626702 Msa0792860:three_prime_UTR 35.0%
! TAACACCTGTTTTCTCATGT+GGG - chr5_3:4626684-4626703 Msa0792860:three_prime_UTR 35.0%
GTTGTGGGAATGTTTAACAA+TGG + chr5_3:4626710-4626729 None:intergenic 35.0%
TCAAGCCTATTGTAAGATGA+GGG + chr5_3:4626962-4626981 None:intergenic 35.0%
TCTAATATGAAGCACGGATA+TGG + chr5_3:4627153-4627172 None:intergenic 35.0%
! TTTTTCTCCTCCAAATGTTG+TGG - chr5_3:4627358-4627377 Msa0792860:CDS 35.0%
ATATCTACCACAACATTTGG+AGG + chr5_3:4627368-4627387 None:intergenic 35.0%
!! TTATTGATTCCTGATCTGTC+CGG - chr5_3:4627392-4627411 Msa0792860:intron 35.0%
TGTAAATGAATCGTACCTTG+AGG - chr5_3:4627564-4627583 Msa0792860:intron 35.0%
GTAAATGAATCGTACCTTGA+GGG - chr5_3:4627565-4627584 Msa0792860:intron 35.0%
GTATTCCTGATTTATCCACT+AGG + chr5_3:4627768-4627787 None:intergenic 35.0%
AACAAAAACAGCAATTGGAC+CGG - chr5_3:4627791-4627810 Msa0792860:intron 35.0%
TATAATGCAATCGCATTCTC+CGG + chr5_3:4627813-4627832 None:intergenic 35.0%
GAGAATGCGATTGCATTATA+AGG - chr5_3:4627813-4627832 Msa0792860:intron 35.0%
!! CACTCTTTGTTGTTACTATG+GGG + chr5_3:4627975-4627994 None:intergenic 35.0%
!! CACACTCTTTGTTGTTACTA+TGG + chr5_3:4627977-4627996 None:intergenic 35.0%
AGGTTGTAACTTCTTAACTG+CGG + chr5_3:4628027-4628046 None:intergenic 35.0%
GAAGTTACAACCTTCCAAAT+AGG - chr5_3:4628034-4628053 Msa0792860:CDS 35.0%
TTCATGGTATACTCATGGAT+TGG + chr5_3:4628066-4628085 None:intergenic 35.0%
GTAACTTCATGGTATACTCA+TGG + chr5_3:4628071-4628090 None:intergenic 35.0%
ATACCATGAAGTTACAAAGG+TGG - chr5_3:4628076-4628095 Msa0792860:intron 35.0%
! TATTTGGAATTGTTCTGGAC+CGG + chr5_3:4628177-4628196 None:intergenic 35.0%
ATTCTGCTTCTGTAATGCAA+AGG + chr5_3:4628561-4628580 None:intergenic 35.0%
! TTACGAGGCGTTAAAATCTA+AGG - chr5_3:4628611-4628630 Msa0792860:intron 35.0%
ATTGAAATCATAGCCAGGAA+TGG + chr5_3:4628708-4628727 None:intergenic 35.0%
GCTATGATTTCAATTGCGTT+AGG - chr5_3:4628714-4628733 Msa0792860:CDS 35.0%
AAAGCAATAGAAGAGGAAGA+AGG + chr5_3:4628919-4628938 None:intergenic 35.0%
GACAAAGAAAGCAATAGAAG+AGG + chr5_3:4628926-4628945 None:intergenic 35.0%
GAGCTACTTCTTACTAGTTA+TGG - chr5_3:4629014-4629033 Msa0792860:intron 35.0%
ATGCATGGATGAATTACAAG+TGG + chr5_3:4629117-4629136 None:intergenic 35.0%
TGCAAAAGATCAGCCTATTA+TGG - chr5_3:4629310-4629329 Msa0792860:intron 35.0%
!! GCGAAGAGGCTTTAAATATT+TGG - chr5_3:4629484-4629503 Msa0792860:CDS 35.0%
!! GAGGCTTTAAATATTTGGGT+TGG - chr5_3:4629489-4629508 Msa0792860:CDS 35.0%
CGTTGTAATGAAAACACGTT+TGG - chr5_3:4629568-4629587 Msa0792860:CDS 35.0%
! CATTTGCTGAATCTTTCTCA+AGG - chr5_3:4629688-4629707 Msa0792860:CDS 35.0%
AGAACCGTTGATATGATGTA+CGG + chr5_3:4629720-4629739 None:intergenic 35.0%
ACATCATATCAACGGTTCTA+TGG - chr5_3:4629721-4629740 Msa0792860:CDS 35.0%
CATCATATCAACGGTTCTAT+GGG - chr5_3:4629722-4629741 Msa0792860:CDS 35.0%
! TGACATGATACCCTTTTACT+TGG - chr5_3:4629877-4629896 Msa0792860:intron 35.0%
! GACATGATACCCTTTTACTT+GGG - chr5_3:4629878-4629897 Msa0792860:intron 35.0%
! ACATGATACCCTTTTACTTG+GGG - chr5_3:4629879-4629898 Msa0792860:intron 35.0%
AAAAGCTTCCCCAAGTAAAA+GGG + chr5_3:4629890-4629909 None:intergenic 35.0%
! ATCTGCTGATGTTACTTCAA+GGG - chr5_3:4629925-4629944 Msa0792860:intron 35.0%
GAAATTGAATCCATCTAGGA+TGG - chr5_3:4630008-4630027 Msa0792860:intron 35.0%
AGAGCTTATCGACATGTTAT+AGG + chr5_3:4630113-4630132 None:intergenic 35.0%
TGGTATCAATAGTTAGGCAT+TGG - chr5_3:4630318-4630337 Msa0792860:intron 35.0%
! CAAAAGTATGGCAACCTTAT+TGG - chr5_3:4630375-4630394 Msa0792860:intron 35.0%
!! TATGGCAACCTTATTGGTTT+CGG - chr5_3:4630381-4630400 Msa0792860:intron 35.0%
AATCTATCAGTCACTAACCA+AGG + chr5_3:4630565-4630584 None:intergenic 35.0%
! GTGGGTTGTGAATAATACAT+TGG - chr5_3:4630658-4630677 Msa0792860:intron 35.0%
! AAAGACTTGGCCCTTTTATA+TGG - chr5_3:4630955-4630974 Msa0792860:intron 35.0%
GAGTAAGCAAGTTTCTAATG+TGG - chr5_3:4631138-4631157 Msa0792860:intron 35.0%
CAAGCTGATCACATATGAAA+CGG + chr5_3:4631181-4631200 None:intergenic 35.0%
ATATGTGATCAGCTTGGAAT+AGG - chr5_3:4631185-4631204 Msa0792860:intron 35.0%
! TTGGAATAGGATTCCTTTTG+AGG - chr5_3:4631198-4631217 Msa0792860:intron 35.0%
! TGGAATAGGATTCCTTTTGA+GGG - chr5_3:4631199-4631218 Msa0792860:intron 35.0%
ACAGTAGCAAGAGCAAATAT+CGG + chr5_3:4631230-4631249 None:intergenic 35.0%
! GACAATTTTTCCATATGCTG+TGG - chr5_3:4631353-4631372 Msa0792860:intron 35.0%
TTAGCCATATATACGAGTCT+AGG - chr5_3:4631583-4631602 Msa0792860:CDS 35.0%
TAGCCATATATACGAGTCTA+GGG - chr5_3:4631584-4631603 Msa0792860:CDS 35.0%
GTTATGGAGTTTGTCTGAAT+AGG - chr5_3:4631732-4631751 Msa0792860:five_prime_UTR 35.0%
! TGGTGAAAGGTGAGTTTTTG+TGG + chr5_3:4626573-4626592 None:intergenic 40.0%
!! TGTTCTACAACCTCTGAGAT+TGG + chr5_3:4626732-4626751 None:intergenic 40.0%
CTAAACAGTCTAACAGTGAC+AGG + chr5_3:4626758-4626777 None:intergenic 40.0%
GAGAAGTTAGTTACCTGAAG+AGG + chr5_3:4626841-4626860 None:intergenic 40.0%
GTTCTCCCTCATCTTACAAT+AGG - chr5_3:4626954-4626973 Msa0792860:exon 40.0%
CTCAAGCCTATTGTAAGATG+AGG + chr5_3:4626963-4626982 None:intergenic 40.0%
TAGGAGTGAGAACATAGTTG+TGG - chr5_3:4627271-4627290 Msa0792860:intron 40.0%
AGGAGTGAGAACATAGTTGT+GGG - chr5_3:4627272-4627291 Msa0792860:intron 40.0%
!! CTCATTTCTCTCACTGACTT+GGG + chr5_3:4627524-4627543 None:intergenic 40.0%
ATTTATCCACTAGGTCAGTC+TGG + chr5_3:4627759-4627778 None:intergenic 40.0%
! ACTGACCTAGTGGATAAATC+AGG - chr5_3:4627760-4627779 Msa0792860:intron 40.0%
CACGGTGCTTTCAGATTAAT+AGG + chr5_3:4627885-4627904 None:intergenic 40.0%
!! CTATTAATCTGAAAGCACCG+TGG - chr5_3:4627883-4627902 Msa0792860:intron 40.0%
!! TTTACCCGTTGGTGTCAATT+GGG + chr5_3:4627933-4627952 None:intergenic 40.0%
!!! TTTTACCCGTTGGTGTCAAT+TGG + chr5_3:4627934-4627953 None:intergenic 40.0%
GAGTGTGCTAAACTATTAGC+AGG - chr5_3:4627990-4628009 Msa0792860:CDS 40.0%
TTGGCAAGTTCCTATTTGGA+AGG + chr5_3:4628047-4628066 None:intergenic 40.0%
!! TGGATTGGCAAGTTCCTATT+TGG + chr5_3:4628051-4628070 None:intergenic 40.0%
GTACCACCTTTGTAACTTCA+TGG + chr5_3:4628082-4628101 None:intergenic 40.0%
AGTAAGTCCACGTGACTTTA+TGG - chr5_3:4628136-4628155 Msa0792860:intron 40.0%
GTAAGTCCACGTGACTTTAT+GGG - chr5_3:4628137-4628156 Msa0792860:intron 40.0%
GAAAGGGAAGCTGAATAACA+AGG + chr5_3:4628498-4628517 None:intergenic 40.0%
! ATGCTCTAAACATGAGAGTG+AGG - chr5_3:4628584-4628603 Msa0792860:intron 40.0%
TGAGAGTGAGGAAAATTACG+AGG - chr5_3:4628596-4628615 Msa0792860:intron 40.0%
AGAATTGAGGTGCAAGCAAA+TGG - chr5_3:4628654-4628673 Msa0792860:CDS 40.0%
! TGAAGAGGGGCATAATAAGA+CGG - chr5_3:4628677-4628696 Msa0792860:CDS 40.0%
ACGCAATTGAAATCATAGCC+AGG + chr5_3:4628713-4628732 None:intergenic 40.0%
GGATGCTATTGTAGCTAATG+TGG + chr5_3:4628745-4628764 None:intergenic 40.0%
CTAGTAAGAAGTAGCTCAAC+CGG + chr5_3:4629011-4629030 None:intergenic 40.0%
TGAATTACAAGTGGCAGACA+TGG + chr5_3:4629108-4629127 None:intergenic 40.0%
ATCAGCCTATTATGGCATTG+TGG - chr5_3:4629318-4629337 Msa0792860:intron 40.0%
! GATCTACTTCTGGTTGCTTA+TGG - chr5_3:4629437-4629456 Msa0792860:intron 40.0%
ATCCTCATGTGTTTGCTTCT+TGG - chr5_3:4629539-4629558 Msa0792860:CDS 40.0%
AACCAAGAAGCAAACACATG+AGG + chr5_3:4629544-4629563 None:intergenic 40.0%
!! AGGTTGGTACATCAATAGCA+AGG - chr5_3:4629637-4629656 Msa0792860:CDS 40.0%
TGCTCCGTACATCATATCAA+CGG - chr5_3:4629713-4629732 Msa0792860:CDS 40.0%
CAACGGTTCTATGGGTTTAT+TGG - chr5_3:4629730-4629749 Msa0792860:CDS 40.0%
! TGACCTGATACCCTTTTACT+TGG - chr5_3:4629832-4629851 Msa0792860:intron 40.0%
! GACCTGATACCCTTTTACTT+GGG - chr5_3:4629833-4629852 Msa0792860:intron 40.0%
!! AACCCAAGTAAAAGGGTATC+AGG + chr5_3:4629838-4629857 None:intergenic 40.0%
! TACCCTTTTACTTGGGTTTC+AGG - chr5_3:4629840-4629859 Msa0792860:intron 40.0%
! ACCCTTTTACTTGGGTTTCA+GGG - chr5_3:4629841-4629860 Msa0792860:intron 40.0%
GAAAAGCTTCCCCAAGTAAA+AGG + chr5_3:4629891-4629910 None:intergenic 40.0%
! CATCTGCTGATGTTACTTCA+AGG - chr5_3:4629924-4629943 Msa0792860:intron 40.0%
! TAAACTGATTCAGGTTCCGA+AGG + chr5_3:4629970-4629989 None:intergenic 40.0%
TATAAACAGGCCATCCTAGA+TGG + chr5_3:4630021-4630040 None:intergenic 40.0%
! AGTTCATCTAAGGCCTTACA+TGG + chr5_3:4630822-4630841 None:intergenic 40.0%
TGCATGCAAAATCATCACCA+TGG + chr5_3:4630921-4630940 None:intergenic 40.0%
!!! TTTTTTGCAGGGGTCTGTTT+TGG - chr5_3:4631023-4631042 Msa0792860:intron 40.0%
! TTTTTGCAGGGGTCTGTTTT+GGG - chr5_3:4631024-4631043 Msa0792860:intron 40.0%
TCTGTTCACACTTTCCATTC+AGG - chr5_3:4631049-4631068 Msa0792860:intron 40.0%
GTGCTTCATATTCACCTGAA+TGG + chr5_3:4631066-4631085 None:intergenic 40.0%
CGTTTCATATGTGATCAGCT+TGG - chr5_3:4631179-4631198 Msa0792860:intron 40.0%
!! TAGGATTCCTTTTGAGGGAA+CGG - chr5_3:4631204-4631223 Msa0792860:intron 40.0%
CTTATACAGGACAGGATTCA+AGG + chr5_3:4631430-4631449 None:intergenic 40.0%
TGAACACTCTTATACAGGAC+AGG + chr5_3:4631438-4631457 None:intergenic 40.0%
CGTCGACCAATTTCTGTTAT+AGG - chr5_3:4631537-4631556 Msa0792860:intron 40.0%
GAACCCTAGACTCGTATATA+TGG + chr5_3:4631590-4631609 None:intergenic 40.0%
TGAAGTCTCATCCAACCACA+TGG - chr5_3:4626546-4626565 Msa0792860:three_prime_UTR 45.0%
! GTTTTTGTGGTCCATGTGGT+TGG + chr5_3:4626560-4626579 None:intergenic 45.0%
! GTGAGTTTTTGTGGTCCATG+TGG + chr5_3:4626564-4626583 None:intergenic 45.0%
AATGGCCCACATGAGAAAAC+AGG + chr5_3:4626692-4626711 None:intergenic 45.0%
ATTCCCACAACCAATCTCAG+AGG - chr5_3:4626719-4626738 Msa0792860:three_prime_UTR 45.0%
!! CAACCTCTGAGATTGGTTGT+GGG + chr5_3:4626725-4626744 None:intergenic 45.0%
!! ACAACCTCTGAGATTGGTTG+TGG + chr5_3:4626726-4626745 None:intergenic 45.0%
GCGGAGTCTAATATGAAGCA+CGG + chr5_3:4627159-4627178 None:intergenic 45.0%
GTAGGGGTAAGTTTACGTGT+AGG - chr5_3:4627252-4627271 Msa0792860:intron 45.0%
GGAGTGAGAACATAGTTGTG+GGG - chr5_3:4627273-4627292 Msa0792860:intron 45.0%
AAATGTGCCTGTGAGTACGT+TGG - chr5_3:4627488-4627507 Msa0792860:intron 45.0%
! CCTCATTTCTCTCACTGACT+TGG + chr5_3:4627525-4627544 None:intergenic 45.0%
CCAAGTCAGTGAGAGAAATG+AGG - chr5_3:4627522-4627541 Msa0792860:intron 45.0%
! TGGTTCTTTGCGCCTAGTTT+TGG + chr5_3:4627735-4627754 None:intergenic 45.0%
! TGGACTTTTGTTGCTCTCCA+CGG + chr5_3:4627903-4627922 None:intergenic 45.0%
GTAAAATCTCCCTGTGCTTC+AGG - chr5_3:4627948-4627967 Msa0792860:intron 45.0%
! AAAGAAGCACAACGTCCTGA+GGG + chr5_3:4628110-4628129 None:intergenic 45.0%
TCCACGTGACTTTATGGGAT+TGG - chr5_3:4628142-4628161 Msa0792860:intron 45.0%
TCCAATCCCATAAAGTCACG+TGG + chr5_3:4628146-4628165 None:intergenic 45.0%
GTGCAAGCAAATGGTGAAGA+GGG - chr5_3:4628663-4628682 Msa0792860:CDS 45.0%
TGCAAGCAAATGGTGAAGAG+GGG - chr5_3:4628664-4628683 Msa0792860:CDS 45.0%
TAAGACGGAGATTCCATTCC+TGG - chr5_3:4628692-4628711 Msa0792860:CDS 45.0%
TAGAATAGGCTGTTGGCGAA+TGG + chr5_3:4628766-4628785 None:intergenic 45.0%
ATTCGCCAACAGCCTATTCT+AGG - chr5_3:4628765-4628784 Msa0792860:intron 45.0%
GTGATCCTAGAATAGGCTGT+TGG + chr5_3:4628773-4628792 None:intergenic 45.0%
TTCTGACAGAATCTGCAGAC+CGG + chr5_3:4628799-4628818 None:intergenic 45.0%
AAAGTGAAACCAGCAGCAAC+GGG + chr5_3:4628846-4628865 None:intergenic 45.0%
GAAAGTGAAACCAGCAGCAA+CGG + chr5_3:4628847-4628866 None:intergenic 45.0%
ATAATTCCGCAATGTGCACC+AGG - chr5_3:4628888-4628907 Msa0792860:CDS 45.0%
TAATTCCGCAATGTGCACCA+GGG - chr5_3:4628889-4628908 Msa0792860:CDS 45.0%
TTGGCGTGTTTGGTCTCTAA+CGG + chr5_3:4629150-4629169 None:intergenic 45.0%
ACCAAACACGCCAAAGTTGA+AGG - chr5_3:4629156-4629175 Msa0792860:intron 45.0%
TCCTTCAACTTTGGCGTGTT+TGG + chr5_3:4629160-4629179 None:intergenic 45.0%
TGCTGCCACAATGCCATAAT+AGG + chr5_3:4629326-4629345 None:intergenic 45.0%
GTATCTGAATTCCCTGCAGA+TGG - chr5_3:4629415-4629434 Msa0792860:intron 45.0%
CAGAAGTAGATCCATCTGCA+GGG + chr5_3:4629429-4629448 None:intergenic 45.0%
! TGGACTTTTCATCAGCGAAG+AGG - chr5_3:4629470-4629489 Msa0792860:intron 45.0%
!!! TTTGGGTTGGTGCTTTTCAC+TGG - chr5_3:4629502-4629521 Msa0792860:CDS 45.0%
CCCCTGAAACCCAAGTAAAA+GGG + chr5_3:4629845-4629864 None:intergenic 45.0%
! CCCTTTTACTTGGGTTTCAG+GGG - chr5_3:4629842-4629861 Msa0792860:intron 45.0%
TCCCCTGAAACCCAAGTAAA+AGG + chr5_3:4629846-4629865 None:intergenic 45.0%
! GGGAAGCTTTTCAGAAAGTC+TGG - chr5_3:4629899-4629918 Msa0792860:intron 45.0%
GTTGTCCACAGTACTTCCTT+CGG - chr5_3:4629951-4629970 Msa0792860:intron 45.0%
AACATGTCGATAAGCTCTCC+AGG - chr5_3:4630115-4630134 Msa0792860:intron 45.0%
!! GTTAGGCATTGGCAAAGAGA+AGG - chr5_3:4630329-4630348 Msa0792860:intron 45.0%
CGAGCTTACCGAAACCAATA+AGG + chr5_3:4630392-4630411 None:intergenic 45.0%
GCAGTTGAACGATTCTCTCT+CGG - chr5_3:4630507-4630526 Msa0792860:intron 45.0%
! AACCCTACAGCTTTTCTTGC+AGG - chr5_3:4630537-4630556 Msa0792860:intron 45.0%
CTCCTGCAAGAAAAGCTGTA+GGG + chr5_3:4630542-4630561 None:intergenic 45.0%
! TCAAGTGCAGGGTATTTCTC+CGG - chr5_3:4630995-4631014 Msa0792860:intron 45.0%
!!! TCTCCGGAGTTGTTTTTTGC+AGG - chr5_3:4631011-4631030 Msa0792860:intron 45.0%
!!! CTCCGGAGTTGTTTTTTGCA+GGG - chr5_3:4631012-4631031 Msa0792860:intron 45.0%
!!! TCCGGAGTTGTTTTTTGCAG+GGG - chr5_3:4631013-4631032 Msa0792860:intron 45.0%
ACCCCTGCAAAAAACAACTC+CGG + chr5_3:4631017-4631036 None:intergenic 45.0%
! TTTTGCAGGGGTCTGTTTTG+GGG - chr5_3:4631025-4631044 Msa0792860:intron 45.0%
CACACGTTTCTCACCTCTTC+AGG - chr5_3:4626825-4626844 Msa0792860:three_prime_UTR 50.0%
ACGGATATGGACACTGACAC+TGG + chr5_3:4627140-4627159 None:intergenic 50.0%
TACGCTGCAAAGGCTAGTGT+TGG - chr5_3:4627179-4627198 Msa0792860:intron 50.0%
ACGCTGCAAAGGCTAGTGTT+GGG - chr5_3:4627180-4627199 Msa0792860:intron 50.0%
! AAAGGCTAGTGTTGGGCGTA+GGG - chr5_3:4627187-4627206 Msa0792860:intron 50.0%
TGATCACTACCGGACAGATC+AGG + chr5_3:4627404-4627423 None:intergenic 50.0%
TGCCTCTGTCTGATCACTAC+CGG + chr5_3:4627414-4627433 None:intergenic 50.0%
AACCAACCAGACTGACCTAG+TGG - chr5_3:4627750-4627769 Msa0792860:intron 50.0%
ATCCACTAGGTCAGTCTGGT+TGG + chr5_3:4627755-4627774 None:intergenic 50.0%
GACCACCCAATTGACACCAA+CGG - chr5_3:4627925-4627944 Msa0792860:intron 50.0%
ACCACCCAATTGACACCAAC+GGG - chr5_3:4627926-4627945 Msa0792860:intron 50.0%
! CACAGGGAGATTTTACCCGT+TGG + chr5_3:4627944-4627963 None:intergenic 50.0%
! GAAAGAAGCACAACGTCCTG+AGG + chr5_3:4628111-4628130 None:intergenic 50.0%
GGACGTTGTGCTTCTTTCTG+AGG - chr5_3:4628113-4628132 Msa0792860:intron 50.0%
ATGGGATTGGACGTTCTAGC+CGG - chr5_3:4628155-4628174 Msa0792860:intron 50.0%
GGTGCAAGCAAATGGTGAAG+AGG - chr5_3:4628662-4628681 Msa0792860:CDS 50.0%
!! CCTATTCTAGGATCACCGTC+CGG - chr5_3:4628777-4628796 Msa0792860:intron 50.0%
GGTCTGCAGATTCTGTCAGA+AGG - chr5_3:4628798-4628817 Msa0792860:intron 50.0%
AACGGGAGTAACTGCTGAAG+AGG + chr5_3:4628829-4628848 None:intergenic 50.0%
! AAGAGGAAGAAGGTGTACCC+TGG + chr5_3:4628909-4628928 None:intergenic 50.0%
! AACGGCTAGTTCTCGATGCA+TGG + chr5_3:4629132-4629151 None:intergenic 50.0%
CCAGAAGTAGATCCATCTGC+AGG + chr5_3:4629430-4629449 None:intergenic 50.0%
CCTGCAGATGGATCTACTTC+TGG - chr5_3:4629427-4629446 Msa0792860:intron 50.0%
! TTCTGGTTGCTTATGGCTGC+AGG - chr5_3:4629444-4629463 Msa0792860:intron 50.0%
TTGCTTATGGCTGCAGGTTG+TGG - chr5_3:4629450-4629469 Msa0792860:intron 50.0%
TTCTGTCTCTCGACGGAACA+TGG - chr5_3:4629661-4629680 Msa0792860:CDS 50.0%
!! AGGTTCCGAAGGAAGTACTG+TGG + chr5_3:4629959-4629978 None:intergenic 50.0%
GCTCCTGCAAGAAAAGCTGT+AGG + chr5_3:4630543-4630562 None:intergenic 50.0%
! AGCTTTTCTTGCAGGAGCCT+TGG - chr5_3:4630545-4630564 Msa0792860:intron 50.0%
!! TTTGCAGGGGTCTGTTTTGG+GGG - chr5_3:4631026-4631045 Msa0792860:intron 50.0%
ATATCGGCCGTTCCCTCAAA+AGG + chr5_3:4631214-4631233 None:intergenic 50.0%
TGCTACTGTCGCAACCGTAA+TGG - chr5_3:4631241-4631260 Msa0792860:intron 50.0%
GTTGAAGCAGCCACAGCATA+TGG + chr5_3:4631366-4631385 None:intergenic 50.0%
! TGTCGGTGTCTGACACAACG+CGG + chr5_3:4627063-4627082 None:intergenic 55.0%
TAGACTCCGCTACGCTGCAA+AGG - chr5_3:4627169-4627188 Msa0792860:CDS 55.0%
!! CACTAGCCTTTGCAGCGTAG+CGG + chr5_3:4627178-4627197 None:intergenic 55.0%
! CAAAGGCTAGTGTTGGGCGT+AGG - chr5_3:4627186-4627205 Msa0792860:intron 55.0%
! GGGCAGTAGGGGTGTATTGA+AGG - chr5_3:4627207-4627226 Msa0792860:intron 55.0%
GTCCGGTAGTGATCAGACAG+AGG - chr5_3:4627409-4627428 Msa0792860:intron 55.0%
ACAGAGGCAACGTTCTCGTG+CGG - chr5_3:4627425-4627444 Msa0792860:intron 55.0%
AACGTTCTCGTGCGGCATTC+CGG - chr5_3:4627433-4627452 Msa0792860:intron 55.0%
! TGGAGTGCCAACGTACTCAC+AGG + chr5_3:4627498-4627517 None:intergenic 55.0%
!! TCTCTCACTGACTTGGGCGT+TGG + chr5_3:4627518-4627537 None:intergenic 55.0%
CGTCACAGAAGCCGTTAGCA+CGG + chr5_3:4627613-4627632 None:intergenic 55.0%
TGCTAACGGCTTCTGTGACG+CGG - chr5_3:4627613-4627632 Msa0792860:intron 55.0%
GCCATTGGAGGCCACATGTA+CGG - chr5_3:4627650-4627669 Msa0792860:intron 55.0%
ACCGTACATGTGGCCTCCAA+TGG + chr5_3:4627654-4627673 None:intergenic 55.0%
CCTTTCCTGCACCGTACATG+TGG + chr5_3:4627664-4627683 None:intergenic 55.0%
CCACATGTACGGTGCAGGAA+AGG - chr5_3:4627661-4627680 Msa0792860:intron 55.0%
TGTACGGTGCAGGAAAGGTG+AGG - chr5_3:4627666-4627685 Msa0792860:intron 55.0%
GTACGGTGCAGGAAAGGTGA+GGG - chr5_3:4627667-4627686 Msa0792860:intron 55.0%
!! TTTGGTGAGCACGCTGGTTC+CGG + chr5_3:4627717-4627736 None:intergenic 55.0%
!!! CCTAGTTTTGGTGAGCACGC+TGG + chr5_3:4627723-4627742 None:intergenic 55.0%
CCAGCGTGCTCACCAAAACT+AGG - chr5_3:4627720-4627739 Msa0792860:intron 55.0%
GGTGTCAATTGGGTGGTCTG+TGG + chr5_3:4627923-4627942 None:intergenic 55.0%
!! ACCCGTTGGTGTCAATTGGG+TGG + chr5_3:4627930-4627949 None:intergenic 55.0%
CTATGGGGTCCTGAAGCACA+GGG + chr5_3:4627960-4627979 None:intergenic 55.0%
ACTATGGGGTCCTGAAGCAC+AGG + chr5_3:4627961-4627980 None:intergenic 55.0%
AAGGTGGTACCTGTTCCCTC+AGG - chr5_3:4628092-4628111 Msa0792860:intron 55.0%
CCGGACGGTGATCCTAGAAT+AGG + chr5_3:4628780-4628799 None:intergenic 55.0%
GACAGAATCTGCAGACCGGA+CGG + chr5_3:4628795-4628814 None:intergenic 55.0%
GTGTACCCTGGTGCACATTG+CGG + chr5_3:4628897-4628916 None:intergenic 55.0%
GCAAGGCTTCTGTCTCTCGA+CGG - chr5_3:4629654-4629673 Msa0792860:CDS 55.0%
CGCGGGACACGTCTAATCTG+AGG + chr5_3:4627045-4627064 None:intergenic 60.0%
! GTCGGTGTCTGACACAACGC+GGG + chr5_3:4627062-4627081 None:intergenic 60.0%
! AGTGTTGGGCGTAGGGCAGT+AGG - chr5_3:4627194-4627213 Msa0792860:intron 60.0%
GTGTTGGGCGTAGGGCAGTA+GGG - chr5_3:4627195-4627214 Msa0792860:intron 60.0%
TGTTGGGCGTAGGGCAGTAG+GGG - chr5_3:4627196-4627215 Msa0792860:intron 60.0%
!! CGGTGGCGGAGTAGTCTTCA+TGG - chr5_3:4627458-4627477 Msa0792860:intron 60.0%
GTGACTCAGCGTCACCCTCA+AGG + chr5_3:4627582-4627601 None:intergenic 60.0%
CACCCTGAGAGCCGTGCTAA+CGG - chr5_3:4627599-4627618 Msa0792860:intron 60.0%
AGCCGTTAGCACGGCTCTCA+GGG + chr5_3:4627604-4627623 None:intergenic 60.0%
AAGCCGTTAGCACGGCTCTC+AGG + chr5_3:4627605-4627624 None:intergenic 60.0%
CCTCCAATGGCTCCCTGATG+AGG + chr5_3:4627641-4627660 None:intergenic 60.0%
CCTCATCAGGGAGCCATTGG+AGG - chr5_3:4627638-4627657 Msa0792860:intron 60.0%
! GAAAGGTGAGGGCGTGTTCC+AGG - chr5_3:4627678-4627697 Msa0792860:intron 60.0%
TCCAGGACGGTGATCCACAC+CGG - chr5_3:4627695-4627714 Msa0792860:intron 60.0%
GCACAACGTCCTGAGGGAAC+AGG + chr5_3:4628104-4628123 None:intergenic 60.0%
GCAGTTACTCCCGTTGCTGC+TGG - chr5_3:4628834-4628853 Msa0792860:intron 60.0%
TCTCGTGCGGCATTCCGGCA+CGG - chr5_3:4627438-4627457 Msa0792860:intron 65.0%
AGACTACTCCGCCACCGTGC+CGG + chr5_3:4627455-4627474 None:intergenic 65.0%
TGTGACGCGGCGCCTCATCA+GGG - chr5_3:4627626-4627645 Msa0792860:intron 65.0%
GCGCCTCATCAGGGAGCCAT+TGG - chr5_3:4627635-4627654 Msa0792860:intron 65.0%
GGAGGCCACATGTACGGTGC+AGG - chr5_3:4627656-4627675 Msa0792860:intron 65.0%
! GGTGAGGGCGTGTTCCAGGA+CGG - chr5_3:4627682-4627701 Msa0792860:intron 65.0%
TCCGGTGTGGATCACCGTCC+TGG + chr5_3:4627699-4627718 None:intergenic 65.0%
!! TGAGCACGCTGGTTCCGGTG+TGG + chr5_3:4627712-4627731 None:intergenic 65.0%
CTGTGACGCGGCGCCTCATC+AGG - chr5_3:4627625-4627644 Msa0792860:intron 70.0%
CGTGCGGCATTCCGGCACGG+TGG - chr5_3:4627441-4627460 Msa0792860:intron 75.0%
GCGGCATTCCGGCACGGTGG+CGG - chr5_3:4627444-4627463 Msa0792860:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 4626545 4631841 4626545 ID=Msa0792860;Name=Msa0792860
chr5_3 mRNA 4626545 4631841 4626545 ID=Msa0792860-mRNA-1;Parent=Msa0792860;Name=Msa0792860-mRNA-1;_AED=0.16;_eAED=0.16;_QI=132|1|1|1|1|1|10|416|373
chr5_3 exon 4626545 4627041 4626545 ID=Msa0792860-mRNA-1:exon:1817;Parent=Msa0792860-mRNA-1
chr5_3 exon 4627124 4627189 4627124 ID=Msa0792860-mRNA-1:exon:1816;Parent=Msa0792860-mRNA-1
chr5_3 exon 4627316 4627381 4627316 ID=Msa0792860-mRNA-1:exon:1815;Parent=Msa0792860-mRNA-1
chr5_3 exon 4627820 4627875 4627820 ID=Msa0792860-mRNA-1:exon:1814;Parent=Msa0792860-mRNA-1
chr5_3 exon 4627984 4628056 4627984 ID=Msa0792860-mRNA-1:exon:1813;Parent=Msa0792860-mRNA-1
chr5_3 exon 4628440 4628524 4628440 ID=Msa0792860-mRNA-1:exon:1812;Parent=Msa0792860-mRNA-1
chr5_3 exon 4628635 4628747 4628635 ID=Msa0792860-mRNA-1:exon:1811;Parent=Msa0792860-mRNA-1
chr5_3 exon 4628880 4628952 4628880 ID=Msa0792860-mRNA-1:exon:1810;Parent=Msa0792860-mRNA-1
chr5_3 exon 4629476 4629814 4629476 ID=Msa0792860-mRNA-1:exon:1809;Parent=Msa0792860-mRNA-1
chr5_3 exon 4631540 4631841 4631540 ID=Msa0792860-mRNA-1:exon:1808;Parent=Msa0792860-mRNA-1
chr5_3 five_prime_UTR 4631710 4631841 4631710 ID=Msa0792860-mRNA-1:five_prime_utr;Parent=Msa0792860-mRNA-1
chr5_3 CDS 4631540 4631709 4631540 ID=Msa0792860-mRNA-1:cds;Parent=Msa0792860-mRNA-1
chr5_3 CDS 4629476 4629814 4629476 ID=Msa0792860-mRNA-1:cds;Parent=Msa0792860-mRNA-1
chr5_3 CDS 4628880 4628952 4628880 ID=Msa0792860-mRNA-1:cds;Parent=Msa0792860-mRNA-1
chr5_3 CDS 4628635 4628747 4628635 ID=Msa0792860-mRNA-1:cds;Parent=Msa0792860-mRNA-1
chr5_3 CDS 4628440 4628524 4628440 ID=Msa0792860-mRNA-1:cds;Parent=Msa0792860-mRNA-1
chr5_3 CDS 4627984 4628056 4627984 ID=Msa0792860-mRNA-1:cds;Parent=Msa0792860-mRNA-1
chr5_3 CDS 4627820 4627875 4627820 ID=Msa0792860-mRNA-1:cds;Parent=Msa0792860-mRNA-1
chr5_3 CDS 4627316 4627381 4627316 ID=Msa0792860-mRNA-1:cds;Parent=Msa0792860-mRNA-1
chr5_3 CDS 4627124 4627189 4627124 ID=Msa0792860-mRNA-1:cds;Parent=Msa0792860-mRNA-1
chr5_3 CDS 4626961 4627041 4626961 ID=Msa0792860-mRNA-1:cds;Parent=Msa0792860-mRNA-1
chr5_3 three_prime_UTR 4626545 4626960 4626545 ID=Msa0792860-mRNA-1:three_prime_utr;Parent=Msa0792860-mRNA-1
Gene Sequence

>Msa0792860

ATGTCTTTAACACCTGTTTTCTCATGTGGGCCATTGTTAAACATTCCCACAACCAATCTCAGAGGTTGTAGAACAAAACCTGTCACTGTTAGACTGTTTAGTTCTGTAGCTTTCCCTCATAGATTGTTTGCAAATTGGAATACAAATGCACACGTTTCTCACCTCTTCAGAAGCAGAATTAAATGCTCTAAACATGAGAGTGAGGAAAATTACGAGGCGTTAAAATCTAAGGATATATCAGATACACAAGATAGAATTGAGGTGCAAGCAAATGGTGAAGAGGGGCATAATAAGACGGAGATTCCATTCCTGGCTATGATTTCAATTGCGTTAGGCATAGCCACATTAGCTACAATAGCATCCATTCGCCAACAGCCTATTCTAGGATCACCGTCCGGTCTGCAGATTCTGTCAGAAGGTTCTTCCTCTTCAGCAGTTACTCCCGTTGCTGCTGGTTTCACTTTCAAAGTTTTTGGATTCAGCGTTATAATTCCGCAATGTGCACCAGGATGGATCTACTTCTGGTTGCTTATGGCTGCAGGTTGTGGACTTTTCATCAGCGAAGAGGCTTTAAATATTTGGGTTGGTACATCAATAGCAAGGCTTCTGTCTCTCGACGGAACATGGCAGTCATTTGCTGAATCTTTCTCAAGGAATGCTCCGTACATCATATCAACGGTTCTATGGGTTTATTGGGGAGTTTGTATTAGTGACATGATACCCTTTTACTTGGGGAAGCTTTTCAGAAAGTCTGGTGCATCTGCTGATGTTACTTCAAGGTTAGGCATTGGCAAAGAGAAGGCTACAGAAATCACAGATGTTGTACAAAAGTATGGCAACCTTATTGGTTTCGTTGAACGATTCTCTCTCGGAGTTAGAAACCCTACAGCTTTTCTTGCAGGAGCCTTGGGTATTTCTCCGGAGTTGTTTTTTGCAGGGGTCTGTTTTGGGGGTCTGTTCACACTTTCCATTCAGCTTGGAATAGGATTCCTTTTGAGGGAACGGCCGATATTTGCTCTTGCTACTGTCGCAACCGTAATGGGAATTTGGACAATTTTTCCATATGCTGTGGCTGCTTCAACTGCTTTATTCTTTTATGTCAGACGGAAGTACTTCTCTTAG

Protein sequence

>Msa0792860

MSLTPVFSCGPLLNIPTTNLRGCRTKPVTVRLFSSVAFPHRLFANWNTNAHVSHLFRSRIKCSKHESEENYEALKSKDISDTQDRIEVQANGEEGHNKTEIPFLAMISIALGIATLATIASIRQQPILGSPSGLQILSEGSSSSAVTPVAAGFTFKVFGFSVIIPQCAPGWIYFWLLMAAGCGLFISEEALNIWVGTSIARLLSLDGTWQSFAESFSRNAPYIISTVLWVYWGVCISDMIPFYLGKLFRKSGASADVTSRLGIGKEKATEITDVVQKYGNLIGFVERFSLGVRNPTAFLAGALGISPELFFAGVCFGGLFTLSIQLGIGFLLRERPIFALATVATVMGIWTIFPYAVAASTALFFYVRRKYFS*