AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0135400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0135400 MtrunA17_Chr5g0418001 83.478 230 20 3 1 230 1 212 3.18e-135 378
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0135400 AT5G43750.1 55.251 219 79 4 12 230 13 212 2.96e-78 234

Find 60 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAATTTCAGGAACATTT+TGG 0.115202 1_3:+67032159 Msa0135400:intron
CTTCACCTTCATTGAAAGTA+TGG 0.219255 1_3:-67031803 None:intergenic
GTTTGCTATAGAATAGAAAT+AGG 0.233160 1_3:-67033151 None:intergenic
TGGGATTTCAATGACAAATA+TGG 0.271183 1_3:+67032939 Msa0135400:CDS
TTCCCACCAGCCATTGCTGC+TGG 0.280159 1_3:+67032636 Msa0135400:CDS
CTTTCCATGTTGTATATTTG+AGG 0.297169 1_3:-67032870 None:intergenic
GAATGCCATTAGTGCGAAAT+TGG 0.318148 1_3:-67031645 None:intergenic
CTAATGCAGGGCTTATTTCA+TGG 0.328399 1_3:+67032610 Msa0135400:intron
GTTGACCAATTTCGCACTAA+TGG 0.350257 1_3:+67031640 Msa0135400:CDS
GGTCAACAGGATCTTCATTA+AGG 0.351255 1_3:-67031624 None:intergenic
ACTATAATTCCATGAGCATA+TGG 0.355011 1_3:+67032919 Msa0135400:CDS
TTTGAGTATGGAATATTTGA+TGG 0.360719 1_3:+67031777 Msa0135400:CDS
CCAACACCACTCAACTTTCA+TGG 0.373078 1_3:+67031526 Msa0135400:CDS
ACAAAATTCTTGTTGAATGC+TGG 0.374097 1_3:+67031580 Msa0135400:CDS
TTATAGGAAGAATTTGAGTA+TGG 0.374124 1_3:+67031765 Msa0135400:intron
ATGACAAATATGGAGACCTT+TGG 0.379641 1_3:+67032949 Msa0135400:CDS
CTGGGTATTCTTCGATGTTC+CGG 0.383727 1_3:+67032655 Msa0135400:CDS
TTTAAATATAATGAATATGA+AGG 0.390038 1_3:+67033061 Msa0135400:three_prime_UTR
CTGCACTGCAGCCGCAATTG+AGG 0.406936 1_3:+67032474 Msa0135400:intron
TGACAAATATGGAGACCTTT+GGG 0.407790 1_3:+67032950 Msa0135400:CDS
TCAAAGTGGTGAGGTTGATC+AGG 0.412034 1_3:-67032846 None:intergenic
TTTGATACTGTAGAGGTTTG+TGG 0.425140 1_3:-67032516 None:intergenic
TTTGCTATAGAATAGAAATA+GGG 0.431324 1_3:-67033150 None:intergenic
GAGTACTTGTTCATTGGAGC+AGG 0.451279 1_3:+67032783 Msa0135400:CDS
TTAGTGCGAAATTGGTCAAC+AGG 0.452985 1_3:-67031637 None:intergenic
TCCCACCAGCCATTGCTGCT+GGG 0.480024 1_3:+67032637 Msa0135400:CDS
GAATACCCAGCAGCAATGGC+TGG 0.512495 1_3:-67032642 None:intergenic
CAAATATACAACATGGAAAG+AGG 0.518390 1_3:+67032873 Msa0135400:CDS
GAGTTTGGATGAAGTGATGA+TGG 0.519240 1_3:-67031482 None:intergenic
CTATAATTCCATGAGCATAT+GGG 0.524970 1_3:+67032920 Msa0135400:CDS
CCATGAAAGTTGAGTGGTGT+TGG 0.531670 1_3:-67031526 None:intergenic
ATTGAAATCCCATATGCTCA+TGG 0.535585 1_3:-67032928 None:intergenic
GGTCACCATACTTTCAATGA+AGG 0.543716 1_3:+67031798 Msa0135400:CDS
ACAGGATCTTCATTAAGGTC+AGG 0.545810 1_3:-67031619 None:intergenic
GAGTGGTGTTGGAGATGAGA+AGG 0.548650 1_3:-67031515 None:intergenic
CGCCATGTGTCAGACTTGGT+TGG 0.553256 1_3:-67031431 None:intergenic
CGAAGAATACCCAGCAGCAA+TGG 0.553586 1_3:-67032646 None:intergenic
AACATACCTTGAAATCCAGT+GGG 0.557528 1_3:-67032218 None:intergenic
AATGAAGGTGAAGAAAAGAA+AGG 0.563141 1_3:+67031813 Msa0135400:CDS
TACCCAGCAGCAATGGCTGG+TGG 0.580696 1_3:-67032639 None:intergenic
ACCCAGCAGCAATGGCTGGT+GGG 0.586372 1_3:-67032638 None:intergenic
ATTTGAGGTTCAAAGTGGTG+AGG 0.601318 1_3:-67032855 None:intergenic
GGGAGGGACAAGTGAGAGTG+AGG 0.610541 1_3:-67031461 None:intergenic
CAGTTGCGTGGTGATAAAAG+TGG 0.613381 1_3:+67031388 None:intergenic
AGTCGATTCTGCCTCAATTG+CGG 0.614094 1_3:-67032485 None:intergenic
AAGGATGACATAATAGCAGT+AGG 0.616111 1_3:+67032191 Msa0135400:CDS
ATAGCGCCATGTGTCAGACT+TGG 0.620326 1_3:-67031435 None:intergenic
TGGATGAAGTGATGATGGGA+GGG 0.623001 1_3:-67031477 None:intergenic
AGTACTTGTTCATTGGAGCA+GGG 0.628749 1_3:+67032784 Msa0135400:CDS
AAACATACCTTGAAATCCAG+TGG 0.629247 1_3:-67032219 None:intergenic
TCTTGATAGTAAAATCCCAA+AGG 0.630483 1_3:-67032965 None:intergenic
TTGGATGAAGTGATGATGGG+AGG 0.636746 1_3:-67031478 None:intergenic
TGTATATTTGAGGTTCAAAG+TGG 0.644225 1_3:-67032860 None:intergenic
AGTTTGGATGAAGTGATGAT+GGG 0.668199 1_3:-67031481 None:intergenic
TGAACCTCAAATATACAACA+TGG 0.679208 1_3:+67032866 Msa0135400:CDS
CATACCTTGAAATCCAGTGG+GGG 0.685937 1_3:-67032216 None:intergenic
AACCAACCAAGTCTGACACA+TGG 0.687944 1_3:+67031429 Msa0135400:exon
ATACCTTGAAATCCAGTGGG+GGG 0.705939 1_3:-67032215 None:intergenic
ACATACCTTGAAATCCAGTG+GGG 0.724590 1_3:-67032217 None:intergenic
AATATGCCATGAAAGTTGAG+TGG 0.727294 1_3:-67031532 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATGAAAAAAATAC+AGG - chr1_3:67031673-67031692 None:intergenic 10.0%
!! AAAAAAAAAATTAGAGAATA+AGG + chr1_3:67031957-67031976 Msa0135400:intron 10.0%
!! TTTAAATATAATGAATATGA+AGG + chr1_3:67033061-67033080 Msa0135400:three_prime_UTR 10.0%
!! TATATATATGAAAAAAATAC+AGG - chr1_3:67031673-67031692 None:intergenic 10.0%
!! AAAAAAAAAATTAGAGAATA+AGG + chr1_3:67031957-67031976 Msa0135400:intron 10.0%
!! TTTAAATATAATGAATATGA+AGG + chr1_3:67033061-67033080 Msa0135400:three_prime_UTR 10.0%
!!! TCAATCATTTTGTTTTTTAA+TGG + chr1_3:67031888-67031907 Msa0135400:intron 15.0%
!!! TCAATCATTTTGTTTTTTAA+TGG + chr1_3:67031888-67031907 Msa0135400:intron 15.0%
!! ATATATGAAAAAAATACAGG+TGG - chr1_3:67031670-67031689 None:intergenic 20.0%
!! TTGTAATACAAGTTAGAAAA+TGG - chr1_3:67032253-67032272 None:intergenic 20.0%
!!! TAGTTAACATTTAGAATTAC+CGG - chr1_3:67032677-67032696 None:intergenic 20.0%
!!! TTTTACTATCAAGAAGAATA+AGG + chr1_3:67032974-67032993 Msa0135400:CDS 20.0%
!!! TTTGCTATAGAATAGAAATA+GGG - chr1_3:67033153-67033172 None:intergenic 20.0%
!!! ACATACATTTTTTTAGACAA+GGG - chr1_3:67033198-67033217 None:intergenic 20.0%
!! TCTAAAAAAATGTATGTGTT+AGG + chr1_3:67033201-67033220 Msa0135400:three_prime_UTR 20.0%
!! ATATATGAAAAAAATACAGG+TGG - chr1_3:67031670-67031689 None:intergenic 20.0%
!! TTGTAATACAAGTTAGAAAA+TGG - chr1_3:67032253-67032272 None:intergenic 20.0%
!!! TAGTTAACATTTAGAATTAC+CGG - chr1_3:67032677-67032696 None:intergenic 20.0%
!!! TTTTACTATCAAGAAGAATA+AGG + chr1_3:67032974-67032993 Msa0135400:CDS 20.0%
!!! TTTGCTATAGAATAGAAATA+GGG - chr1_3:67033153-67033172 None:intergenic 20.0%
!!! ACATACATTTTTTTAGACAA+GGG - chr1_3:67033198-67033217 None:intergenic 20.0%
!! TCTAAAAAAATGTATGTGTT+AGG + chr1_3:67033201-67033220 Msa0135400:three_prime_UTR 20.0%
!!! TTGTTTTGTGTGGATTTTAT+AGG + chr1_3:67031749-67031768 Msa0135400:intron 25.0%
! TTATAGGAAGAATTTGAGTA+TGG + chr1_3:67031765-67031784 Msa0135400:intron 25.0%
! TTTGAGTATGGAATATTTGA+TGG + chr1_3:67031777-67031796 Msa0135400:CDS 25.0%
!! ATCAATTTCAGGAACATTTT+GGG + chr1_3:67032160-67032179 Msa0135400:intron 25.0%
! AACGATTATAGTCAAAATTG+TGG - chr1_3:67032568-67032587 None:intergenic 25.0%
!!! TCTAATTTTGATTCTAATGC+AGG + chr1_3:67032597-67032616 Msa0135400:intron 25.0%
!!! CTAATTTTGATTCTAATGCA+GGG + chr1_3:67032598-67032617 Msa0135400:intron 25.0%
! TAAGTACAATGTATGTTTCA+GGG + chr1_3:67032759-67032778 Msa0135400:intron 25.0%
!! TGTATTTTGCATAATTGAGA+TGG + chr1_3:67032818-67032837 Msa0135400:CDS 25.0%
!!! GTTTGCTATAGAATAGAAAT+AGG - chr1_3:67033154-67033173 None:intergenic 25.0%
!!! CATACATTTTTTTAGACAAG+GGG - chr1_3:67033197-67033216 None:intergenic 25.0%
!!! CACATACATTTTTTTAGACA+AGG - chr1_3:67033199-67033218 None:intergenic 25.0%
!!! TTGTTTTGTGTGGATTTTAT+AGG + chr1_3:67031749-67031768 Msa0135400:intron 25.0%
! TTATAGGAAGAATTTGAGTA+TGG + chr1_3:67031765-67031784 Msa0135400:intron 25.0%
! TTTGAGTATGGAATATTTGA+TGG + chr1_3:67031777-67031796 Msa0135400:CDS 25.0%
!! ATCAATTTCAGGAACATTTT+GGG + chr1_3:67032160-67032179 Msa0135400:intron 25.0%
! AACGATTATAGTCAAAATTG+TGG - chr1_3:67032568-67032587 None:intergenic 25.0%
!!! TCTAATTTTGATTCTAATGC+AGG + chr1_3:67032597-67032616 Msa0135400:intron 25.0%
!!! CTAATTTTGATTCTAATGCA+GGG + chr1_3:67032598-67032617 Msa0135400:intron 25.0%
! TAAGTACAATGTATGTTTCA+GGG + chr1_3:67032759-67032778 Msa0135400:intron 25.0%
!! TGTATTTTGCATAATTGAGA+TGG + chr1_3:67032818-67032837 Msa0135400:CDS 25.0%
!!! GTTTGCTATAGAATAGAAAT+AGG - chr1_3:67033154-67033173 None:intergenic 25.0%
!!! CATACATTTTTTTAGACAAG+GGG - chr1_3:67033197-67033216 None:intergenic 25.0%
!!! CACATACATTTTTTTAGACA+AGG - chr1_3:67033199-67033218 None:intergenic 25.0%
! TGTTGAGTTTTTGTTACTCT+TGG - chr1_3:67031563-67031582 None:intergenic 30.0%
ACAAAATTCTTGTTGAATGC+TGG + chr1_3:67031580-67031599 Msa0135400:CDS 30.0%
AATGAAGGTGAAGAAAAGAA+AGG + chr1_3:67031813-67031832 Msa0135400:CDS 30.0%
TTAATGGAAATTGAAGCATG+TGG + chr1_3:67031904-67031923 Msa0135400:intron 30.0%
TACCATATCAAACTTACCAT+TGG + chr1_3:67032049-67032068 Msa0135400:intron 30.0%
CAAAGTTCATGATCAATTTC+AGG + chr1_3:67032149-67032168 Msa0135400:intron 30.0%
! GATCAATTTCAGGAACATTT+TGG + chr1_3:67032159-67032178 Msa0135400:intron 30.0%
! TCAATTTCAGGAACATTTTG+GGG + chr1_3:67032161-67032180 Msa0135400:intron 30.0%
ACAAGTTAGAAAATGGTACA+AGG - chr1_3:67032246-67032265 None:intergenic 30.0%
ATAGTCAAAATTGTGGTCAA+GGG - chr1_3:67032561-67032580 None:intergenic 30.0%
TATAGTCAAAATTGTGGTCA+AGG - chr1_3:67032562-67032581 None:intergenic 30.0%
CTCAATCTAGAAATCAATTG+AGG + chr1_3:67032714-67032733 Msa0135400:intron 30.0%
CTGAAACATACATTGTACTT+AGG - chr1_3:67032760-67032779 None:intergenic 30.0%
CTAAGTACAATGTATGTTTC+AGG + chr1_3:67032758-67032777 Msa0135400:intron 30.0%
AAGTACAATGTATGTTTCAG+GGG + chr1_3:67032760-67032779 Msa0135400:intron 30.0%
! TGTATATTTGAGGTTCAAAG+TGG - chr1_3:67032863-67032882 None:intergenic 30.0%
TGAACCTCAAATATACAACA+TGG + chr1_3:67032866-67032885 Msa0135400:CDS 30.0%
CTTTCCATGTTGTATATTTG+AGG - chr1_3:67032873-67032892 None:intergenic 30.0%
CAAATATACAACATGGAAAG+AGG + chr1_3:67032873-67032892 Msa0135400:CDS 30.0%
ACTATAATTCCATGAGCATA+TGG + chr1_3:67032919-67032938 Msa0135400:CDS 30.0%
CTATAATTCCATGAGCATAT+GGG + chr1_3:67032920-67032939 Msa0135400:CDS 30.0%
TGGGATTTCAATGACAAATA+TGG + chr1_3:67032939-67032958 Msa0135400:CDS 30.0%
! TCTTGATAGTAAAATCCCAA+AGG - chr1_3:67032968-67032987 None:intergenic 30.0%
! CTTTTGTCTATATATGTGCA+TGG + chr1_3:67033032-67033051 Msa0135400:three_prime_UTR 30.0%
! TGTTGAGTTTTTGTTACTCT+TGG - chr1_3:67031563-67031582 None:intergenic 30.0%
ACAAAATTCTTGTTGAATGC+TGG + chr1_3:67031580-67031599 Msa0135400:CDS 30.0%
AATGAAGGTGAAGAAAAGAA+AGG + chr1_3:67031813-67031832 Msa0135400:CDS 30.0%
TTAATGGAAATTGAAGCATG+TGG + chr1_3:67031904-67031923 Msa0135400:intron 30.0%
TACCATATCAAACTTACCAT+TGG + chr1_3:67032049-67032068 Msa0135400:intron 30.0%
CAAAGTTCATGATCAATTTC+AGG + chr1_3:67032149-67032168 Msa0135400:intron 30.0%
! GATCAATTTCAGGAACATTT+TGG + chr1_3:67032159-67032178 Msa0135400:intron 30.0%
! TCAATTTCAGGAACATTTTG+GGG + chr1_3:67032161-67032180 Msa0135400:intron 30.0%
ACAAGTTAGAAAATGGTACA+AGG - chr1_3:67032246-67032265 None:intergenic 30.0%
ATAGTCAAAATTGTGGTCAA+GGG - chr1_3:67032561-67032580 None:intergenic 30.0%
TATAGTCAAAATTGTGGTCA+AGG - chr1_3:67032562-67032581 None:intergenic 30.0%
CTCAATCTAGAAATCAATTG+AGG + chr1_3:67032714-67032733 Msa0135400:intron 30.0%
CTGAAACATACATTGTACTT+AGG - chr1_3:67032760-67032779 None:intergenic 30.0%
CTAAGTACAATGTATGTTTC+AGG + chr1_3:67032758-67032777 Msa0135400:intron 30.0%
AAGTACAATGTATGTTTCAG+GGG + chr1_3:67032760-67032779 Msa0135400:intron 30.0%
! TGTATATTTGAGGTTCAAAG+TGG - chr1_3:67032863-67032882 None:intergenic 30.0%
TGAACCTCAAATATACAACA+TGG + chr1_3:67032866-67032885 Msa0135400:CDS 30.0%
CTTTCCATGTTGTATATTTG+AGG - chr1_3:67032873-67032892 None:intergenic 30.0%
CAAATATACAACATGGAAAG+AGG + chr1_3:67032873-67032892 Msa0135400:CDS 30.0%
ACTATAATTCCATGAGCATA+TGG + chr1_3:67032919-67032938 Msa0135400:CDS 30.0%
CTATAATTCCATGAGCATAT+GGG + chr1_3:67032920-67032939 Msa0135400:CDS 30.0%
TGGGATTTCAATGACAAATA+TGG + chr1_3:67032939-67032958 Msa0135400:CDS 30.0%
! TCTTGATAGTAAAATCCCAA+AGG - chr1_3:67032968-67032987 None:intergenic 30.0%
! CTTTTGTCTATATATGTGCA+TGG + chr1_3:67033032-67033051 Msa0135400:three_prime_UTR 30.0%
AGTTTGGATGAAGTGATGAT+GGG - chr1_3:67031484-67031503 None:intergenic 35.0%
!!! GAAGGATTTTGAAGTGAGTT+TGG - chr1_3:67031500-67031519 None:intergenic 35.0%
AATATGCCATGAAAGTTGAG+TGG - chr1_3:67031535-67031554 None:intergenic 35.0%
!!! TGAGTTTTGCTTGTTTTGTG+TGG + chr1_3:67031739-67031758 Msa0135400:intron 35.0%
CTTCACCTTCATTGAAAGTA+TGG - chr1_3:67031806-67031825 None:intergenic 35.0%
CACCAATGGTAAGTTTGATA+TGG - chr1_3:67032054-67032073 None:intergenic 35.0%
!!! AACATTTTGGGGTGCAATTA+AGG + chr1_3:67032172-67032191 Msa0135400:CDS 35.0%
AAGGATGACATAATAGCAGT+AGG + chr1_3:67032191-67032210 Msa0135400:CDS 35.0%
AACATACCTTGAAATCCAGT+GGG - chr1_3:67032221-67032240 None:intergenic 35.0%
AAACATACCTTGAAATCCAG+TGG - chr1_3:67032222-67032241 None:intergenic 35.0%
! ACCACAATTTGGAGGTTTTA+CGG - chr1_3:67032308-67032327 None:intergenic 35.0%
CTAATTGAACCACAATTTGG+AGG - chr1_3:67032316-67032335 None:intergenic 35.0%
GAGCTAATTGAACCACAATT+TGG - chr1_3:67032319-67032338 None:intergenic 35.0%
TGTGGTTCAATTAGCTCAAA+CGG + chr1_3:67032322-67032341 Msa0135400:intron 35.0%
TCATGTTTGTGTTGCAATTG+CGG + chr1_3:67032374-67032393 Msa0135400:intron 35.0%
TTTGATACTGTAGAGGTTTG+TGG - chr1_3:67032519-67032538 None:intergenic 35.0%
TAGTCAAAATTGTGGTCAAG+GGG - chr1_3:67032560-67032579 None:intergenic 35.0%
AGTACAATGTATGTTTCAGG+GGG + chr1_3:67032761-67032780 Msa0135400:intron 35.0%
ATTGAAATCCCATATGCTCA+TGG - chr1_3:67032931-67032950 None:intergenic 35.0%
ATGACAAATATGGAGACCTT+TGG + chr1_3:67032949-67032968 Msa0135400:CDS 35.0%
TGACAAATATGGAGACCTTT+GGG + chr1_3:67032950-67032969 Msa0135400:CDS 35.0%
GTATGTGTTAGGATTCTTTC+AGG + chr1_3:67033212-67033231 Msa0135400:three_prime_UTR 35.0%
AGTTTGGATGAAGTGATGAT+GGG - chr1_3:67031484-67031503 None:intergenic 35.0%
!!! GAAGGATTTTGAAGTGAGTT+TGG - chr1_3:67031500-67031519 None:intergenic 35.0%
AATATGCCATGAAAGTTGAG+TGG - chr1_3:67031535-67031554 None:intergenic 35.0%
!!! TGAGTTTTGCTTGTTTTGTG+TGG + chr1_3:67031739-67031758 Msa0135400:intron 35.0%
CTTCACCTTCATTGAAAGTA+TGG - chr1_3:67031806-67031825 None:intergenic 35.0%
CACCAATGGTAAGTTTGATA+TGG - chr1_3:67032054-67032073 None:intergenic 35.0%
!!! AACATTTTGGGGTGCAATTA+AGG + chr1_3:67032172-67032191 Msa0135400:CDS 35.0%
AAGGATGACATAATAGCAGT+AGG + chr1_3:67032191-67032210 Msa0135400:CDS 35.0%
AACATACCTTGAAATCCAGT+GGG - chr1_3:67032221-67032240 None:intergenic 35.0%
AAACATACCTTGAAATCCAG+TGG - chr1_3:67032222-67032241 None:intergenic 35.0%
! ACCACAATTTGGAGGTTTTA+CGG - chr1_3:67032308-67032327 None:intergenic 35.0%
CTAATTGAACCACAATTTGG+AGG - chr1_3:67032316-67032335 None:intergenic 35.0%
GAGCTAATTGAACCACAATT+TGG - chr1_3:67032319-67032338 None:intergenic 35.0%
TGTGGTTCAATTAGCTCAAA+CGG + chr1_3:67032322-67032341 Msa0135400:intron 35.0%
TCATGTTTGTGTTGCAATTG+CGG + chr1_3:67032374-67032393 Msa0135400:intron 35.0%
TTTGATACTGTAGAGGTTTG+TGG - chr1_3:67032519-67032538 None:intergenic 35.0%
TAGTCAAAATTGTGGTCAAG+GGG - chr1_3:67032560-67032579 None:intergenic 35.0%
AGTACAATGTATGTTTCAGG+GGG + chr1_3:67032761-67032780 Msa0135400:intron 35.0%
ATTGAAATCCCATATGCTCA+TGG - chr1_3:67032931-67032950 None:intergenic 35.0%
ATGACAAATATGGAGACCTT+TGG + chr1_3:67032949-67032968 Msa0135400:CDS 35.0%
TGACAAATATGGAGACCTTT+GGG + chr1_3:67032950-67032969 Msa0135400:CDS 35.0%
GAGTTTGGATGAAGTGATGA+TGG - chr1_3:67031485-67031504 None:intergenic 40.0%
ACAGGATCTTCATTAAGGTC+AGG - chr1_3:67031622-67031641 None:intergenic 40.0%
GGTCAACAGGATCTTCATTA+AGG - chr1_3:67031627-67031646 None:intergenic 40.0%
TTAGTGCGAAATTGGTCAAC+AGG - chr1_3:67031640-67031659 None:intergenic 40.0%
GTTGACCAATTTCGCACTAA+TGG + chr1_3:67031640-67031659 Msa0135400:CDS 40.0%
GAATGCCATTAGTGCGAAAT+TGG - chr1_3:67031648-67031667 None:intergenic 40.0%
GGTCACCATACTTTCAATGA+AGG + chr1_3:67031798-67031817 Msa0135400:CDS 40.0%
ATTGAAGCATGTGGTACTCA+TGG + chr1_3:67031913-67031932 Msa0135400:intron 40.0%
TCACAGCTCATTAGCTATTG+TGG + chr1_3:67032074-67032093 Msa0135400:intron 40.0%
ACATACCTTGAAATCCAGTG+GGG - chr1_3:67032220-67032239 None:intergenic 40.0%
! CCACAATTTGGAGGTTTTAC+GGG - chr1_3:67032307-67032326 None:intergenic 40.0%
! GCAAGCTTTTGATACTGTAG+AGG - chr1_3:67032526-67032545 None:intergenic 40.0%
CTAATGCAGGGCTTATTTCA+TGG + chr1_3:67032610-67032629 Msa0135400:intron 40.0%
AGTACTTGTTCATTGGAGCA+GGG + chr1_3:67032784-67032803 Msa0135400:CDS 40.0%
! ATTTGAGGTTCAAAGTGGTG+AGG - chr1_3:67032858-67032877 None:intergenic 40.0%
GAGTTTGGATGAAGTGATGA+TGG - chr1_3:67031485-67031504 None:intergenic 40.0%
ACAGGATCTTCATTAAGGTC+AGG - chr1_3:67031622-67031641 None:intergenic 40.0%
GGTCAACAGGATCTTCATTA+AGG - chr1_3:67031627-67031646 None:intergenic 40.0%
TTAGTGCGAAATTGGTCAAC+AGG - chr1_3:67031640-67031659 None:intergenic 40.0%
GTTGACCAATTTCGCACTAA+TGG + chr1_3:67031640-67031659 Msa0135400:CDS 40.0%
GAATGCCATTAGTGCGAAAT+TGG - chr1_3:67031648-67031667 None:intergenic 40.0%
GGTCACCATACTTTCAATGA+AGG + chr1_3:67031798-67031817 Msa0135400:CDS 40.0%
ATTGAAGCATGTGGTACTCA+TGG + chr1_3:67031913-67031932 Msa0135400:intron 40.0%
TCACAGCTCATTAGCTATTG+TGG + chr1_3:67032074-67032093 Msa0135400:intron 40.0%
ACATACCTTGAAATCCAGTG+GGG - chr1_3:67032220-67032239 None:intergenic 40.0%
! CCACAATTTGGAGGTTTTAC+GGG - chr1_3:67032307-67032326 None:intergenic 40.0%
! GCAAGCTTTTGATACTGTAG+AGG - chr1_3:67032526-67032545 None:intergenic 40.0%
CTAATGCAGGGCTTATTTCA+TGG + chr1_3:67032610-67032629 Msa0135400:intron 40.0%
AGTACTTGTTCATTGGAGCA+GGG + chr1_3:67032784-67032803 Msa0135400:CDS 40.0%
! ATTTGAGGTTCAAAGTGGTG+AGG - chr1_3:67032858-67032877 None:intergenic 40.0%
AACCAACCAAGTCTGACACA+TGG + chr1_3:67031429-67031448 Msa0135400:exon 45.0%
!! TGGATGAAGTGATGATGGGA+GGG - chr1_3:67031480-67031499 None:intergenic 45.0%
!! TTGGATGAAGTGATGATGGG+AGG - chr1_3:67031481-67031500 None:intergenic 45.0%
CCATGAAAGTTGAGTGGTGT+TGG - chr1_3:67031529-67031548 None:intergenic 45.0%
CCAACACCACTCAACTTTCA+TGG + chr1_3:67031526-67031545 Msa0135400:CDS 45.0%
CTAATGAGCTGTGACACCAA+TGG - chr1_3:67032068-67032087 None:intergenic 45.0%
CAGCTCATTAGCTATTGTGG+AGG + chr1_3:67032077-67032096 Msa0135400:intron 45.0%
ATACCTTGAAATCCAGTGGG+GGG - chr1_3:67032218-67032237 None:intergenic 45.0%
CATACCTTGAAATCCAGTGG+GGG - chr1_3:67032219-67032238 None:intergenic 45.0%
CCCGTAAAACCTCCAAATTG+TGG + chr1_3:67032304-67032323 Msa0135400:intron 45.0%
! AGTCGATTCTGCCTCAATTG+CGG - chr1_3:67032488-67032507 None:intergenic 45.0%
CTGGGTATTCTTCGATGTTC+CGG + chr1_3:67032655-67032674 Msa0135400:CDS 45.0%
GAGTACTTGTTCATTGGAGC+AGG + chr1_3:67032783-67032802 Msa0135400:CDS 45.0%
! TCAAAGTGGTGAGGTTGATC+AGG - chr1_3:67032849-67032868 None:intergenic 45.0%
AACCAACCAAGTCTGACACA+TGG + chr1_3:67031429-67031448 Msa0135400:exon 45.0%
!! TGGATGAAGTGATGATGGGA+GGG - chr1_3:67031480-67031499 None:intergenic 45.0%
!! TTGGATGAAGTGATGATGGG+AGG - chr1_3:67031481-67031500 None:intergenic 45.0%
CCATGAAAGTTGAGTGGTGT+TGG - chr1_3:67031529-67031548 None:intergenic 45.0%
CCAACACCACTCAACTTTCA+TGG + chr1_3:67031526-67031545 Msa0135400:CDS 45.0%
CTAATGAGCTGTGACACCAA+TGG - chr1_3:67032068-67032087 None:intergenic 45.0%
CAGCTCATTAGCTATTGTGG+AGG + chr1_3:67032077-67032096 Msa0135400:intron 45.0%
ATACCTTGAAATCCAGTGGG+GGG - chr1_3:67032218-67032237 None:intergenic 45.0%
CATACCTTGAAATCCAGTGG+GGG - chr1_3:67032219-67032238 None:intergenic 45.0%
CCCGTAAAACCTCCAAATTG+TGG + chr1_3:67032304-67032323 Msa0135400:intron 45.0%
! AGTCGATTCTGCCTCAATTG+CGG - chr1_3:67032488-67032507 None:intergenic 45.0%
CTGGGTATTCTTCGATGTTC+CGG + chr1_3:67032655-67032674 Msa0135400:CDS 45.0%
GAGTACTTGTTCATTGGAGC+AGG + chr1_3:67032783-67032802 Msa0135400:CDS 45.0%
! TCAAAGTGGTGAGGTTGATC+AGG - chr1_3:67032849-67032868 None:intergenic 45.0%
ATAGCGCCATGTGTCAGACT+TGG - chr1_3:67031438-67031457 None:intergenic 50.0%
! GAGTGGTGTTGGAGATGAGA+AGG - chr1_3:67031518-67031537 None:intergenic 50.0%
CGAAGAATACCCAGCAGCAA+TGG - chr1_3:67032649-67032668 None:intergenic 50.0%
!! CAGGGGGAGTACTTGTTCAT+TGG + chr1_3:67032777-67032796 Msa0135400:intron 50.0%
ATAGCGCCATGTGTCAGACT+TGG - chr1_3:67031438-67031457 None:intergenic 50.0%
! GAGTGGTGTTGGAGATGAGA+AGG - chr1_3:67031518-67031537 None:intergenic 50.0%
CGAAGAATACCCAGCAGCAA+TGG - chr1_3:67032649-67032668 None:intergenic 50.0%
!! CAGGGGGAGTACTTGTTCAT+TGG + chr1_3:67032777-67032796 Msa0135400:intron 50.0%
! CGCCATGTGTCAGACTTGGT+TGG - chr1_3:67031434-67031453 None:intergenic 55.0%
GAATACCCAGCAGCAATGGC+TGG - chr1_3:67032645-67032664 None:intergenic 55.0%
! CGCCATGTGTCAGACTTGGT+TGG - chr1_3:67031434-67031453 None:intergenic 55.0%
GAATACCCAGCAGCAATGGC+TGG - chr1_3:67032645-67032664 None:intergenic 55.0%
GGGAGGGACAAGTGAGAGTG+AGG - chr1_3:67031464-67031483 None:intergenic 60.0%
ATAGCAGTAGGACCCCCCAC+TGG + chr1_3:67032203-67032222 Msa0135400:CDS 60.0%
GGACCCCCCACTGGATTTCA+AGG + chr1_3:67032212-67032231 Msa0135400:CDS 60.0%
GCTGCAGTGCAGTGCAGTTG+TGG - chr1_3:67032466-67032485 None:intergenic 60.0%
CTGCACTGCAGCCGCAATTG+AGG + chr1_3:67032474-67032493 Msa0135400:intron 60.0%
TGGTCAAGGGGCAGCTCAAG+TGG - chr1_3:67032548-67032567 None:intergenic 60.0%
TTCCCACCAGCCATTGCTGC+TGG + chr1_3:67032636-67032655 Msa0135400:CDS 60.0%
TCCCACCAGCCATTGCTGCT+GGG + chr1_3:67032637-67032656 Msa0135400:CDS 60.0%
ACCCAGCAGCAATGGCTGGT+GGG - chr1_3:67032641-67032660 None:intergenic 60.0%
TACCCAGCAGCAATGGCTGG+TGG - chr1_3:67032642-67032661 None:intergenic 60.0%
GGGAGGGACAAGTGAGAGTG+AGG - chr1_3:67031464-67031483 None:intergenic 60.0%
ATAGCAGTAGGACCCCCCAC+TGG + chr1_3:67032203-67032222 Msa0135400:CDS 60.0%
GGACCCCCCACTGGATTTCA+AGG + chr1_3:67032212-67032231 Msa0135400:CDS 60.0%
GCTGCAGTGCAGTGCAGTTG+TGG - chr1_3:67032466-67032485 None:intergenic 60.0%
CTGCACTGCAGCCGCAATTG+AGG + chr1_3:67032474-67032493 Msa0135400:intron 60.0%
TGGTCAAGGGGCAGCTCAAG+TGG - chr1_3:67032548-67032567 None:intergenic 60.0%
TTCCCACCAGCCATTGCTGC+TGG + chr1_3:67032636-67032655 Msa0135400:CDS 60.0%
TCCCACCAGCCATTGCTGCT+GGG + chr1_3:67032637-67032656 Msa0135400:CDS 60.0%
ACCCAGCAGCAATGGCTGGT+GGG - chr1_3:67032641-67032660 None:intergenic 60.0%
TACCCAGCAGCAATGGCTGG+TGG - chr1_3:67032642-67032661 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 67031397 67033232 67031397 ID=Msa0135400;Name=Msa0135400
chr1_3 mRNA 67031397 67033232 67031397 ID=Msa0135400-mRNA-1;Parent=Msa0135400;Name=Msa0135400-mRNA-1;_AED=0.09;_eAED=0.09;_QI=51|0.6|0.83|0.83|1|1|6|216|230
chr1_3 exon 67031397 67031672 67031397 ID=Msa0135400-mRNA-1:exon:22951;Parent=Msa0135400-mRNA-1
chr1_3 exon 67031771 67031834 67031771 ID=Msa0135400-mRNA-1:exon:22952;Parent=Msa0135400-mRNA-1
chr1_3 exon 67032171 67032233 67032171 ID=Msa0135400-mRNA-1:exon:22953;Parent=Msa0135400-mRNA-1
chr1_3 exon 67032485 67032530 67032485 ID=Msa0135400-mRNA-1:exon:22954;Parent=Msa0135400-mRNA-1
chr1_3 exon 67032619 67032676 67032619 ID=Msa0135400-mRNA-1:exon:22955;Parent=Msa0135400-mRNA-1
chr1_3 exon 67032780 67033232 67032780 ID=Msa0135400-mRNA-1:exon:22956;Parent=Msa0135400-mRNA-1
chr1_3 five_prime_UTR 67031397 67031447 67031397 ID=Msa0135400-mRNA-1:five_prime_utr;Parent=Msa0135400-mRNA-1
chr1_3 CDS 67031448 67031672 67031448 ID=Msa0135400-mRNA-1:cds;Parent=Msa0135400-mRNA-1
chr1_3 CDS 67031771 67031834 67031771 ID=Msa0135400-mRNA-1:cds;Parent=Msa0135400-mRNA-1
chr1_3 CDS 67032171 67032233 67032171 ID=Msa0135400-mRNA-1:cds;Parent=Msa0135400-mRNA-1
chr1_3 CDS 67032485 67032530 67032485 ID=Msa0135400-mRNA-1:cds;Parent=Msa0135400-mRNA-1
chr1_3 CDS 67032619 67032676 67032619 ID=Msa0135400-mRNA-1:cds;Parent=Msa0135400-mRNA-1
chr1_3 CDS 67032780 67033016 67032780 ID=Msa0135400-mRNA-1:cds;Parent=Msa0135400-mRNA-1
chr1_3 three_prime_UTR 67033017 67033232 67033017 ID=Msa0135400-mRNA-1:three_prime_utr;Parent=Msa0135400-mRNA-1
Gene Sequence

>Msa0135400

ATGGCGCTATGTTCCTCACTCTCACTTGTCCCTCCCATCATCACTTCATCCAAACTCACTTCAAAATCCTTCTCATCTCCAACACCACTCAACTTTCATGGCATATTCACTACCAAGAGTAACAAAAACTCAACAAAATTCTTGTTGAATGCTGGTTTCAATCTTATTGAGCCTGACCTTAATGAAGATCCTGTTGACCAATTTCGCACTAATGGCATTCCACCTGAAGAATTTGAGTATGGAATATTTGATGGTCACCATACTTTCAATGAAGGTGAAGAAAAGAAAGGAACATTTTGGGGTGCAATTAAGGATGACATAATAGCAGTAGGACCCCCCACTGGATTTCAAGCCGCAATTGAGGCAGAATCGACTACATTTGACCACAAACCTCTACAGGCTTATTTCATGGCTCTTCCCACCAGCCATTGCTGCTGGGTATTCTTCGATGTTCCGGGGGAGTACTTGTTCATTGGAGCAGGGATATTTACAATTGTATTTTGCATAATTGAGATGGATAAACCTGATCAACCTCACCACTTTGAACCTCAAATATACAACATGGAAAGAGGAGCTAGAGACAAGTTGATAAATGACTATAATTCCATGAGCATATGGGATTTCAATGACAAATATGGAGACCTTTGGGATTTTACTATCAAGAAGAATAAGGATGACATAATGAAGAGATAA

Protein sequence

>Msa0135400

MALCSSLSLVPPIITSSKLTSKSFSSPTPLNFHGIFTTKSNKNSTKFLLNAGFNLIEPDLNEDPVDQFRTNGIPPEEFEYGIFDGHHTFNEGEEKKGTFWGAIKDDIIAVGPPTGFQAAIEAESTTFDHKPLQAYFMALPTSHCCWVFFDVPGEYLFIGAGIFTIVFCIIEMDKPDQPHHFEPQIYNMERGARDKLINDYNSMSIWDFNDKYGDLWDFTIKKNKDDIMKR*