AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0244320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0244320 MtrunA17_Chr2g0298061 96.281 242 9 0 1 242 1 242 1.89e-171 471
Msa0244320 MtrunA17_Chr2g0277211 71.341 164 47 0 78 241 60 223 2.53e-78 235
Msa0244320 MtrunA17_Chr2g0277211 39.560 91 50 2 153 239 54 143 5.06e-11 60.5
Msa0244320 MtrunA17_Chr7g0270231 40.559 143 83 2 89 230 67 208 9.91e-25 97.8
Msa0244320 MtrunA17_Chr8g0352991 44.318 88 49 0 70 157 48 135 7.15e-18 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0244320 AT4G25910.1 69.756 205 59 2 39 242 34 236 4.26e-94 276
Msa0244320 AT5G49940.1 60.268 224 63 3 26 241 30 235 3.35e-81 243
Msa0244320 AT5G49940.2 65.812 117 36 1 64 180 62 174 2.37e-44 147
Msa0244320 AT5G49940.2 45.946 74 35 2 172 241 85 157 1.04e-11 62.4
Msa0244320 AT4G01940.1 39.860 143 83 3 89 230 83 223 4.61e-25 99.4

Find 53 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAACCTGCTTTGTTTCT+TGG 0.155090 2_2:+22560635 None:intergenic
TGTTCAACCTCCAAGATTTC+TGG 0.161640 2_2:+22559941 None:intergenic
GAAATTAGACCATATCTTAT+TGG 0.195631 2_2:-22559508 Msa0244320:CDS
TCATTCTTATGATAGCTTTC+TGG 0.208001 2_2:-22561149 Msa0244320:five_prime_UTR
TTCTGCATTAGCCTTCTAAA+TGG 0.296874 2_2:-22559170 Msa0244320:three_prime_UTR
AGACCATATCTTATTGGAAC+TGG 0.334639 2_2:-22559502 Msa0244320:CDS
CCAACCTGATTCCATTTAGA+AGG 0.345253 2_2:+22559159 None:intergenic
AGAAAATGTAGAGAAAGTTT+TGG 0.348094 2_2:-22560125 Msa0244320:CDS
CACAAGCTCCTTGTAGTTTG+AGG 0.369342 2_2:+22560029 None:intergenic
ATGAAGTATTCAACAGTCAT+TGG 0.369540 2_2:-22559201 Msa0244320:three_prime_UTR
CGATAAGATTCCAGAAATCT+TGG 0.378676 2_2:-22559951 Msa0244320:CDS
TTCAGTTCTATCCACATACT+TGG 0.387345 2_2:-22561314 Msa0244320:five_prime_UTR
TTAGCCTTCTAAATGGAATC+AGG 0.393807 2_2:-22559163 Msa0244320:three_prime_UTR
GATTTGAGGCATTGAGTTGT+AGG 0.404948 2_2:+22561074 None:intergenic
TCAGTGTCAGTTACTCTAGT+AGG 0.409608 2_2:-22559228 Msa0244320:three_prime_UTR
ATTATTCACACTCAAATGTT+GGG 0.426463 2_2:-22561113 Msa0244320:exon
ATGATTACATCATTAAAGTT+CGG 0.426909 2_2:-22559450 Msa0244320:CDS
TATTATTCACACTCAAATGT+TGG 0.430753 2_2:-22561114 Msa0244320:exon
CGGCTAAGTGGACCGGCAGC+AGG 0.440486 2_2:-22559430 Msa0244320:CDS
AGCTGCACAGCAGCAATAGA+AGG 0.442231 2_2:+22559358 None:intergenic
AAATGTGTGGACAATAATCT+AGG 0.454304 2_2:+22561017 None:intergenic
TGAAGTAAGGCCTGGTTTGA+TGG 0.459751 2_2:-22560101 Msa0244320:CDS
ATCATTAAAGTTCGGCTAAG+TGG 0.471253 2_2:-22559442 Msa0244320:CDS
CTCAACCATGACATTGAAGA+TGG 0.471530 2_2:-22559993 Msa0244320:CDS
TTCTTGAAGAATCTTATAGC+AGG 0.514284 2_2:-22560749 Msa0244320:intron
CTCAAACTACAAGGAGCTTG+TGG 0.520248 2_2:-22560028 Msa0244320:CDS
AACAAGAGTTCCCAAGTATG+TGG 0.522086 2_2:+22561303 None:intergenic
GACCATATCTTATTGGAACT+GGG 0.523059 2_2:-22559501 Msa0244320:CDS
GATCCCCATCTTCAATGTCA+TGG 0.540108 2_2:+22559988 None:intergenic
CCTCCATCAGCCATCAAACC+AGG 0.556402 2_2:+22560091 None:intergenic
GTTGTTATCCTCAAACTACA+AGG 0.559144 2_2:-22560037 Msa0244320:CDS
GTGGACAATAATCTAGGAGA+TGG 0.560007 2_2:+22561023 None:intergenic
TAAAGTTCGGCTAAGTGGAC+CGG 0.560824 2_2:-22559437 Msa0244320:CDS
TCAGTTCTATCCACATACTT+GGG 0.562898 2_2:-22561313 Msa0244320:five_prime_UTR
GTGGCATTGCATGAGATAGA+TGG 0.565280 2_2:-22560064 Msa0244320:CDS
TTCAATGTCATGGTTGAGCT+AGG 0.567639 2_2:+22559998 None:intergenic
AGTATTCAACAGTCATTGGA+AGG 0.570929 2_2:-22559197 Msa0244320:three_prime_UTR
TCAACCATGACATTGAAGAT+GGG 0.574515 2_2:-22559992 Msa0244320:CDS
CCTTCTAAATGGAATCAGGT+TGG 0.577398 2_2:-22559159 Msa0244320:three_prime_UTR
CAGATACTAGATACTGAGAC+TGG 0.580123 2_2:-22559920 Msa0244320:CDS
TAAGATTCCAGAAATCTTGG+AGG 0.581548 2_2:-22559948 Msa0244320:CDS
AACAAGAAAACTAATACGAA+TGG 0.590876 2_2:+22559118 None:intergenic
CTGGTTTGATGGCTGATGGA+GGG 0.590897 2_2:-22560090 Msa0244320:CDS
CCTGGTTTGATGGCTGATGG+AGG 0.592266 2_2:-22560091 Msa0244320:CDS
GTCAGTGGCAGGACACATCT+CGG 0.597217 2_2:+22560151 None:intergenic
ACCATATCTTATTGGAACTG+GGG 0.604069 2_2:-22559500 Msa0244320:CDS
CCATATCTTATTGGAACTGG+GGG 0.604476 2_2:-22559499 Msa0244320:CDS
GATGGCTGATGGAGGGAATG+TGG 0.613469 2_2:-22560083 Msa0244320:CDS
AGGCCTGGTTTGATGGCTGA+TGG 0.614038 2_2:-22560094 Msa0244320:CDS
CGTGCTCCAAGAAACAAAGC+AGG 0.615747 2_2:-22560641 Msa0244320:intron
CAACCATGACATTGAAGATG+GGG 0.616574 2_2:-22559991 Msa0244320:CDS
ACTGTCATAACTCCTGCTGC+CGG 0.622897 2_2:+22559418 None:intergenic
ATTCACACTCAAATGTTGGG+TGG 0.654781 2_2:-22561110 Msa0244320:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATATTTTATTTTACAAAA+AGG - chr2_2:22559207-22559226 Msa0244320:three_prime_UTR 10.0%
!!! GTTAAATTTTAATTAATTCT+TGG - chr2_2:22559825-22559844 Msa0244320:intron 10.0%
!!! ATAAAATTATTCATTTTTTC+AGG - chr2_2:22560858-22560877 Msa0244320:intron 10.0%
!!! CAATATTTTATTTTACAAAA+AGG - chr2_2:22559207-22559226 Msa0244320:three_prime_UTR 10.0%
!!! GTTAAATTTTAATTAATTCT+TGG - chr2_2:22559825-22559844 Msa0244320:intron 10.0%
!!! ATAAAATTATTCATTTTTTC+AGG - chr2_2:22560858-22560877 Msa0244320:intron 10.0%
!!! ATTAATATTAAGCAAGTTTT+CGG - chr2_2:22559720-22559739 Msa0244320:intron 15.0%
!!! AATTAATTCTTGGATTTTAT+TGG - chr2_2:22559835-22559854 Msa0244320:intron 15.0%
!! AAAATCATGAATTCATATTA+AGG + chr2_2:22559943-22559962 None:intergenic 15.0%
!! AAAAATAATACGAATACAAA+TGG + chr2_2:22561306-22561325 None:intergenic 15.0%
!!! ATTAATATTAAGCAAGTTTT+CGG - chr2_2:22559720-22559739 Msa0244320:intron 15.0%
!!! AATTAATTCTTGGATTTTAT+TGG - chr2_2:22559835-22559854 Msa0244320:intron 15.0%
!! AAAATCATGAATTCATATTA+AGG + chr2_2:22559943-22559962 None:intergenic 15.0%
!! AAAAATAATACGAATACAAA+TGG + chr2_2:22561306-22561325 None:intergenic 15.0%
!! AAAAAAAACAAGAAACATGA+AGG + chr2_2:22559433-22559452 None:intergenic 20.0%
!! TTCAATGTAATTATATGTGT+CGG + chr2_2:22559542-22559561 None:intergenic 20.0%
!!! GATATATGTGAGTTTTTTTT+TGG - chr2_2:22559595-22559614 Msa0244320:intron 20.0%
!!! TTAATATTAAGCAAGTTTTC+GGG - chr2_2:22559721-22559740 Msa0244320:intron 20.0%
!! GTGATATACAAATGAAATTA+TGG + chr2_2:22560572-22560591 None:intergenic 20.0%
!! ATGATTACATCATTAAAGTT+CGG - chr2_2:22560947-22560966 Msa0244320:intron 20.0%
!!! TTGTATTCGTATTATTTTTC+TGG - chr2_2:22561307-22561326 Msa0244320:five_prime_UTR 20.0%
!! AAAAAAAACAAGAAACATGA+AGG + chr2_2:22559433-22559452 None:intergenic 20.0%
!! TTCAATGTAATTATATGTGT+CGG + chr2_2:22559542-22559561 None:intergenic 20.0%
!!! GATATATGTGAGTTTTTTTT+TGG - chr2_2:22559595-22559614 Msa0244320:intron 20.0%
!!! TTAATATTAAGCAAGTTTTC+GGG - chr2_2:22559721-22559740 Msa0244320:intron 20.0%
!! GTGATATACAAATGAAATTA+TGG + chr2_2:22560572-22560591 None:intergenic 20.0%
!! ATGATTACATCATTAAAGTT+CGG - chr2_2:22560947-22560966 Msa0244320:intron 20.0%
!!! TTGTATTCGTATTATTTTTC+TGG - chr2_2:22561307-22561326 Msa0244320:five_prime_UTR 20.0%
!!! GTGTCAATTGTTTTAGTTTT+TGG + chr2_2:22559188-22559207 None:intergenic 25.0%
! TATTATTCACACTCAAATGT+TGG - chr2_2:22559283-22559302 Msa0244320:three_prime_UTR 25.0%
! ATTATTCACACTCAAATGTT+GGG - chr2_2:22559284-22559303 Msa0244320:three_prime_UTR 25.0%
!!! TTGTTGTTTTTGTTGATTTG+AGG + chr2_2:22559340-22559359 None:intergenic 25.0%
!! AGAAAATGTAGAGAAAGTTT+TGG - chr2_2:22560272-22560291 Msa0244320:intron 25.0%
! AATTTCTCTACAAACATGTA+AGG + chr2_2:22560741-22560760 None:intergenic 25.0%
! GAAATTAGACCATATCTTAT+TGG - chr2_2:22560889-22560908 Msa0244320:intron 25.0%
! AACAAGAAAACTAATACGAA+TGG + chr2_2:22561282-22561301 None:intergenic 25.0%
!!! GTGTCAATTGTTTTAGTTTT+TGG + chr2_2:22559188-22559207 None:intergenic 25.0%
! TATTATTCACACTCAAATGT+TGG - chr2_2:22559283-22559302 Msa0244320:three_prime_UTR 25.0%
! ATTATTCACACTCAAATGTT+GGG - chr2_2:22559284-22559303 Msa0244320:three_prime_UTR 25.0%
!!! TTGTTGTTTTTGTTGATTTG+AGG + chr2_2:22559340-22559359 None:intergenic 25.0%
!! AGAAAATGTAGAGAAAGTTT+TGG - chr2_2:22560272-22560291 Msa0244320:intron 25.0%
! AATTTCTCTACAAACATGTA+AGG + chr2_2:22560741-22560760 None:intergenic 25.0%
! GAAATTAGACCATATCTTAT+TGG - chr2_2:22560889-22560908 Msa0244320:intron 25.0%
! AACAAGAAAACTAATACGAA+TGG + chr2_2:22561282-22561301 None:intergenic 25.0%
TCATTCTTATGATAGCTTTC+TGG - chr2_2:22559248-22559267 Msa0244320:three_prime_UTR 30.0%
AAATGTGTGGACAATAATCT+AGG + chr2_2:22559383-22559402 None:intergenic 30.0%
CTTAAAGAGACAAAAATGTG+TGG + chr2_2:22559396-22559415 None:intergenic 30.0%
! CACACATTTTTGTCTCTTTA+AGG - chr2_2:22559394-22559413 Msa0244320:CDS 30.0%
!! AAGAAGTATTTGTGCTTCAT+AGG + chr2_2:22559477-22559496 None:intergenic 30.0%
TTCTTGAAGAATCTTATAGC+AGG - chr2_2:22559648-22559667 Msa0244320:intron 30.0%
!!! CATTGCAATGTTTTTTTTGC+AGG - chr2_2:22560210-22560229 Msa0244320:intron 30.0%
!!! AGAAAGTTTTGGATGAAGTA+AGG - chr2_2:22560283-22560302 Msa0244320:intron 30.0%
! TACACTTTCGACATTTTCTT+CGG + chr2_2:22560514-22560533 None:intergenic 30.0%
!! GCTTTTATGTTTTGTTACGA+AGG + chr2_2:22560597-22560616 None:intergenic 30.0%
! CGCTATTCTTGAGATTTTAT+GGG + chr2_2:22560625-22560644 None:intergenic 30.0%
! ACGCTATTCTTGAGATTTTA+TGG + chr2_2:22560626-22560645 None:intergenic 30.0%
ACTAAGTTGTTTATCCAAAC+AGG - chr2_2:22560681-22560700 Msa0244320:CDS 30.0%
! ATGAAGTATTCAACAGTCAT+TGG - chr2_2:22561196-22561215 Msa0244320:intron 30.0%
TCATTCTTATGATAGCTTTC+TGG - chr2_2:22559248-22559267 Msa0244320:three_prime_UTR 30.0%
AAATGTGTGGACAATAATCT+AGG + chr2_2:22559383-22559402 None:intergenic 30.0%
CTTAAAGAGACAAAAATGTG+TGG + chr2_2:22559396-22559415 None:intergenic 30.0%
! CACACATTTTTGTCTCTTTA+AGG - chr2_2:22559394-22559413 Msa0244320:CDS 30.0%
!! AAGAAGTATTTGTGCTTCAT+AGG + chr2_2:22559477-22559496 None:intergenic 30.0%
TTCTTGAAGAATCTTATAGC+AGG - chr2_2:22559648-22559667 Msa0244320:intron 30.0%
!!! CATTGCAATGTTTTTTTTGC+AGG - chr2_2:22560210-22560229 Msa0244320:intron 30.0%
!!! AGAAAGTTTTGGATGAAGTA+AGG - chr2_2:22560283-22560302 Msa0244320:intron 30.0%
! TACACTTTCGACATTTTCTT+CGG + chr2_2:22560514-22560533 None:intergenic 30.0%
!! GCTTTTATGTTTTGTTACGA+AGG + chr2_2:22560597-22560616 None:intergenic 30.0%
! CGCTATTCTTGAGATTTTAT+GGG + chr2_2:22560625-22560644 None:intergenic 30.0%
! ACGCTATTCTTGAGATTTTA+TGG + chr2_2:22560626-22560645 None:intergenic 30.0%
ACTAAGTTGTTTATCCAAAC+AGG - chr2_2:22560681-22560700 Msa0244320:CDS 30.0%
! ATGAAGTATTCAACAGTCAT+TGG - chr2_2:22561196-22561215 Msa0244320:intron 30.0%
TTCAGTTCTATCCACATACT+TGG - chr2_2:22559083-22559102 Msa0244320:three_prime_UTR 35.0%
TCAGTTCTATCCACATACTT+GGG - chr2_2:22559084-22559103 Msa0244320:three_prime_UTR 35.0%
TTCTTGAATTAAGCGTGTCT+TGG - chr2_2:22559492-22559511 Msa0244320:CDS 35.0%
TATCGTATGAAACTCAGACA+CGG + chr2_2:22559579-22559598 None:intergenic 35.0%
!! AATGAGAGTTGTTTTCTCAG+AGG - chr2_2:22559690-22559709 Msa0244320:intron 35.0%
GTGCTTCATAGATTGCAATT+TGG + chr2_2:22559967-22559986 None:intergenic 35.0%
! ATCTAATCAAGTAGCTTGCA+AGG - chr2_2:22560156-22560175 Msa0244320:CDS 35.0%
! TCTAATCAAGTAGCTTGCAA+GGG - chr2_2:22560157-22560176 Msa0244320:CDS 35.0%
! TCTACATTTTCTTCTGTCAG+TGG + chr2_2:22560264-22560283 None:intergenic 35.0%
GTTGTTATCCTCAAACTACA+AGG - chr2_2:22560360-22560379 Msa0244320:intron 35.0%
TCAACCATGACATTGAAGAT+GGG - chr2_2:22560405-22560424 Msa0244320:intron 35.0%
CGATAAGATTCCAGAAATCT+TGG - chr2_2:22560446-22560465 Msa0244320:intron 35.0%
TAAGATTCCAGAAATCTTGG+AGG - chr2_2:22560449-22560468 Msa0244320:intron 35.0%
! ATGTCGAAAGTGTACGTAAT+TGG - chr2_2:22560520-22560539 Msa0244320:intron 35.0%
GAAAACAGTTTGACCTGATA+CGG - chr2_2:22560648-22560667 Msa0244320:CDS 35.0%
TTGTGAACTTAGATCCTGTT+TGG + chr2_2:22560698-22560717 None:intergenic 35.0%
AGACCATATCTTATTGGAAC+TGG - chr2_2:22560895-22560914 Msa0244320:intron 35.0%
GACCATATCTTATTGGAACT+GGG - chr2_2:22560896-22560915 Msa0244320:intron 35.0%
ACCATATCTTATTGGAACTG+GGG - chr2_2:22560897-22560916 Msa0244320:intron 35.0%
ATCATTAAAGTTCGGCTAAG+TGG - chr2_2:22560955-22560974 Msa0244320:intron 35.0%
AGTATTCAACAGTCATTGGA+AGG - chr2_2:22561200-22561219 Msa0244320:intron 35.0%
!! TTCTGCATTAGCCTTCTAAA+TGG - chr2_2:22561227-22561246 Msa0244320:five_prime_UTR 35.0%
! TTAGCCTTCTAAATGGAATC+AGG - chr2_2:22561234-22561253 Msa0244320:five_prime_UTR 35.0%
TTCAGTTCTATCCACATACT+TGG - chr2_2:22559083-22559102 Msa0244320:three_prime_UTR 35.0%
TCAGTTCTATCCACATACTT+GGG - chr2_2:22559084-22559103 Msa0244320:three_prime_UTR 35.0%
TTCTTGAATTAAGCGTGTCT+TGG - chr2_2:22559492-22559511 Msa0244320:CDS 35.0%
TATCGTATGAAACTCAGACA+CGG + chr2_2:22559579-22559598 None:intergenic 35.0%
!! AATGAGAGTTGTTTTCTCAG+AGG - chr2_2:22559690-22559709 Msa0244320:intron 35.0%
GTGCTTCATAGATTGCAATT+TGG + chr2_2:22559967-22559986 None:intergenic 35.0%
! ATCTAATCAAGTAGCTTGCA+AGG - chr2_2:22560156-22560175 Msa0244320:CDS 35.0%
! TCTAATCAAGTAGCTTGCAA+GGG - chr2_2:22560157-22560176 Msa0244320:CDS 35.0%
! TCTACATTTTCTTCTGTCAG+TGG + chr2_2:22560264-22560283 None:intergenic 35.0%
GTTGTTATCCTCAAACTACA+AGG - chr2_2:22560360-22560379 Msa0244320:intron 35.0%
TCAACCATGACATTGAAGAT+GGG - chr2_2:22560405-22560424 Msa0244320:intron 35.0%
CGATAAGATTCCAGAAATCT+TGG - chr2_2:22560446-22560465 Msa0244320:intron 35.0%
TAAGATTCCAGAAATCTTGG+AGG - chr2_2:22560449-22560468 Msa0244320:intron 35.0%
! ATGTCGAAAGTGTACGTAAT+TGG - chr2_2:22560520-22560539 Msa0244320:intron 35.0%
GAAAACAGTTTGACCTGATA+CGG - chr2_2:22560648-22560667 Msa0244320:CDS 35.0%
TTGTGAACTTAGATCCTGTT+TGG + chr2_2:22560698-22560717 None:intergenic 35.0%
AGACCATATCTTATTGGAAC+TGG - chr2_2:22560895-22560914 Msa0244320:intron 35.0%
GACCATATCTTATTGGAACT+GGG - chr2_2:22560896-22560915 Msa0244320:intron 35.0%
ACCATATCTTATTGGAACTG+GGG - chr2_2:22560897-22560916 Msa0244320:intron 35.0%
ATCATTAAAGTTCGGCTAAG+TGG - chr2_2:22560955-22560974 Msa0244320:intron 35.0%
AGTATTCAACAGTCATTGGA+AGG - chr2_2:22561200-22561219 Msa0244320:intron 35.0%
!! TTCTGCATTAGCCTTCTAAA+TGG - chr2_2:22561227-22561246 Msa0244320:five_prime_UTR 35.0%
! TTAGCCTTCTAAATGGAATC+AGG - chr2_2:22561234-22561253 Msa0244320:five_prime_UTR 35.0%
AACAAGAGTTCCCAAGTATG+TGG + chr2_2:22559097-22559116 None:intergenic 40.0%
ATTCACACTCAAATGTTGGG+TGG - chr2_2:22559287-22559306 Msa0244320:three_prime_UTR 40.0%
!! GATTTGAGGCATTGAGTTGT+AGG + chr2_2:22559326-22559345 None:intergenic 40.0%
GTGGACAATAATCTAGGAGA+TGG + chr2_2:22559377-22559396 None:intergenic 40.0%
GAAACATGAAGGAAGAGAAG+TGG + chr2_2:22559422-22559441 None:intergenic 40.0%
! AATTAAGCGTGTCTTGGTGT+CGG - chr2_2:22559498-22559517 Msa0244320:CDS 40.0%
!! GAAGAACCTGCTTTGTTTCT+TGG + chr2_2:22559765-22559784 None:intergenic 40.0%
TTCAATGTCATGGTTGAGCT+AGG + chr2_2:22560402-22560421 None:intergenic 40.0%
CTCAACCATGACATTGAAGA+TGG - chr2_2:22560404-22560423 Msa0244320:intron 40.0%
CAACCATGACATTGAAGATG+GGG - chr2_2:22560406-22560425 Msa0244320:intron 40.0%
TGTTCAACCTCCAAGATTTC+TGG + chr2_2:22560459-22560478 None:intergenic 40.0%
CAGATACTAGATACTGAGAC+TGG - chr2_2:22560477-22560496 Msa0244320:intron 40.0%
AGTTAAGCACTTACCGTATC+AGG + chr2_2:22560664-22560683 None:intergenic 40.0%
CCATATCTTATTGGAACTGG+GGG - chr2_2:22560898-22560917 Msa0244320:intron 40.0%
TCAGTGTCAGTTACTCTAGT+AGG - chr2_2:22561169-22561188 Msa0244320:five_prime_UTR 40.0%
CCAACCTGATTCCATTTAGA+AGG + chr2_2:22561241-22561260 None:intergenic 40.0%
CCTTCTAAATGGAATCAGGT+TGG - chr2_2:22561238-22561257 Msa0244320:five_prime_UTR 40.0%
AACAAGAGTTCCCAAGTATG+TGG + chr2_2:22559097-22559116 None:intergenic 40.0%
ATTCACACTCAAATGTTGGG+TGG - chr2_2:22559287-22559306 Msa0244320:three_prime_UTR 40.0%
!! GATTTGAGGCATTGAGTTGT+AGG + chr2_2:22559326-22559345 None:intergenic 40.0%
GTGGACAATAATCTAGGAGA+TGG + chr2_2:22559377-22559396 None:intergenic 40.0%
GAAACATGAAGGAAGAGAAG+TGG + chr2_2:22559422-22559441 None:intergenic 40.0%
! AATTAAGCGTGTCTTGGTGT+CGG - chr2_2:22559498-22559517 Msa0244320:CDS 40.0%
!! GAAGAACCTGCTTTGTTTCT+TGG + chr2_2:22559765-22559784 None:intergenic 40.0%
TTCAATGTCATGGTTGAGCT+AGG + chr2_2:22560402-22560421 None:intergenic 40.0%
CTCAACCATGACATTGAAGA+TGG - chr2_2:22560404-22560423 Msa0244320:intron 40.0%
CAACCATGACATTGAAGATG+GGG - chr2_2:22560406-22560425 Msa0244320:intron 40.0%
TGTTCAACCTCCAAGATTTC+TGG + chr2_2:22560459-22560478 None:intergenic 40.0%
CAGATACTAGATACTGAGAC+TGG - chr2_2:22560477-22560496 Msa0244320:intron 40.0%
AGTTAAGCACTTACCGTATC+AGG + chr2_2:22560664-22560683 None:intergenic 40.0%
CCATATCTTATTGGAACTGG+GGG - chr2_2:22560898-22560917 Msa0244320:intron 40.0%
TCAGTGTCAGTTACTCTAGT+AGG - chr2_2:22561169-22561188 Msa0244320:five_prime_UTR 40.0%
CCAACCTGATTCCATTTAGA+AGG + chr2_2:22561241-22561260 None:intergenic 40.0%
CCTTCTAAATGGAATCAGGT+TGG - chr2_2:22561238-22561257 Msa0244320:five_prime_UTR 40.0%
!! GTCTTGGTGTCGGATATGTA+TGG - chr2_2:22559508-22559527 Msa0244320:CDS 45.0%
! GGTGTCGGATATGTATGGTT+CGG - chr2_2:22559513-22559532 Msa0244320:CDS 45.0%
GTAACGTGTCAGTGTCATGT+TGG - chr2_2:22560059-22560078 Msa0244320:CDS 45.0%
! TTGGTGTCTGACATGTGTCA+GGG + chr2_2:22560092-22560111 None:intergenic 45.0%
!! TTTGGTGTCTGACATGTGTC+AGG + chr2_2:22560093-22560112 None:intergenic 45.0%
CCTTAGATTGACGACGTGTT+TGG + chr2_2:22560111-22560130 None:intergenic 45.0%
CCAAACACGTCGTCAATCTA+AGG - chr2_2:22560108-22560127 Msa0244320:CDS 45.0%
! CATTTTCTTCTGTCAGTGGC+AGG + chr2_2:22560260-22560279 None:intergenic 45.0%
!! GTTTTGGATGAAGTAAGGCC+TGG - chr2_2:22560288-22560307 Msa0244320:intron 45.0%
! TGAAGTAAGGCCTGGTTTGA+TGG - chr2_2:22560296-22560315 Msa0244320:intron 45.0%
GTGGCATTGCATGAGATAGA+TGG - chr2_2:22560333-22560352 Msa0244320:intron 45.0%
CACAAGCTCCTTGTAGTTTG+AGG + chr2_2:22560371-22560390 None:intergenic 45.0%
CTCAAACTACAAGGAGCTTG+TGG - chr2_2:22560369-22560388 Msa0244320:intron 45.0%
GATCCCCATCTTCAATGTCA+TGG + chr2_2:22560412-22560431 None:intergenic 45.0%
CCCCCAGTTCCAATAAGATA+TGG + chr2_2:22560901-22560920 None:intergenic 45.0%
TATCTTATTGGAACTGGGGG+AGG - chr2_2:22560901-22560920 Msa0244320:intron 45.0%
TAAAGTTCGGCTAAGTGGAC+CGG - chr2_2:22560960-22560979 Msa0244320:intron 45.0%
!! GTCTTGGTGTCGGATATGTA+TGG - chr2_2:22559508-22559527 Msa0244320:CDS 45.0%
! GGTGTCGGATATGTATGGTT+CGG - chr2_2:22559513-22559532 Msa0244320:CDS 45.0%
GTAACGTGTCAGTGTCATGT+TGG - chr2_2:22560059-22560078 Msa0244320:CDS 45.0%
! TTGGTGTCTGACATGTGTCA+GGG + chr2_2:22560092-22560111 None:intergenic 45.0%
!! TTTGGTGTCTGACATGTGTC+AGG + chr2_2:22560093-22560112 None:intergenic 45.0%
CCTTAGATTGACGACGTGTT+TGG + chr2_2:22560111-22560130 None:intergenic 45.0%
CCAAACACGTCGTCAATCTA+AGG - chr2_2:22560108-22560127 Msa0244320:CDS 45.0%
! CATTTTCTTCTGTCAGTGGC+AGG + chr2_2:22560260-22560279 None:intergenic 45.0%
!! GTTTTGGATGAAGTAAGGCC+TGG - chr2_2:22560288-22560307 Msa0244320:intron 45.0%
! TGAAGTAAGGCCTGGTTTGA+TGG - chr2_2:22560296-22560315 Msa0244320:intron 45.0%
GTGGCATTGCATGAGATAGA+TGG - chr2_2:22560333-22560352 Msa0244320:intron 45.0%
CACAAGCTCCTTGTAGTTTG+AGG + chr2_2:22560371-22560390 None:intergenic 45.0%
CTCAAACTACAAGGAGCTTG+TGG - chr2_2:22560369-22560388 Msa0244320:intron 45.0%
GATCCCCATCTTCAATGTCA+TGG + chr2_2:22560412-22560431 None:intergenic 45.0%
CCCCCAGTTCCAATAAGATA+TGG + chr2_2:22560901-22560920 None:intergenic 45.0%
TATCTTATTGGAACTGGGGG+AGG - chr2_2:22560901-22560920 Msa0244320:intron 45.0%
TAAAGTTCGGCTAAGTGGAC+CGG - chr2_2:22560960-22560979 Msa0244320:intron 45.0%
CGTATGAAACTCAGACACGG+AGG + chr2_2:22559576-22559595 None:intergenic 50.0%
CGTGCTCCAAGAAACAAAGC+AGG - chr2_2:22559756-22559775 Msa0244320:intron 50.0%
! CTGGTTTGATGGCTGATGGA+GGG - chr2_2:22560307-22560326 Msa0244320:intron 50.0%
ACTGTCATAACTCCTGCTGC+CGG + chr2_2:22560982-22561001 None:intergenic 50.0%
AGCTGCACAGCAGCAATAGA+AGG + chr2_2:22561042-22561061 None:intergenic 50.0%
CGTATGAAACTCAGACACGG+AGG + chr2_2:22559576-22559595 None:intergenic 50.0%
CGTGCTCCAAGAAACAAAGC+AGG - chr2_2:22559756-22559775 Msa0244320:intron 50.0%
! CTGGTTTGATGGCTGATGGA+GGG - chr2_2:22560307-22560326 Msa0244320:intron 50.0%
ACTGTCATAACTCCTGCTGC+CGG + chr2_2:22560982-22561001 None:intergenic 50.0%
AGCTGCACAGCAGCAATAGA+AGG + chr2_2:22561042-22561061 None:intergenic 50.0%
GTCAGTGGCAGGACACATCT+CGG + chr2_2:22560249-22560268 None:intergenic 55.0%
! AGGCCTGGTTTGATGGCTGA+TGG - chr2_2:22560303-22560322 Msa0244320:intron 55.0%
CCTCCATCAGCCATCAAACC+AGG + chr2_2:22560309-22560328 None:intergenic 55.0%
! CCTGGTTTGATGGCTGATGG+AGG - chr2_2:22560306-22560325 Msa0244320:intron 55.0%
GATGGCTGATGGAGGGAATG+TGG - chr2_2:22560314-22560333 Msa0244320:intron 55.0%
GTCAGTGGCAGGACACATCT+CGG + chr2_2:22560249-22560268 None:intergenic 55.0%
! AGGCCTGGTTTGATGGCTGA+TGG - chr2_2:22560303-22560322 Msa0244320:intron 55.0%
CCTCCATCAGCCATCAAACC+AGG + chr2_2:22560309-22560328 None:intergenic 55.0%
! CCTGGTTTGATGGCTGATGG+AGG - chr2_2:22560306-22560325 Msa0244320:intron 55.0%
GATGGCTGATGGAGGGAATG+TGG - chr2_2:22560314-22560333 Msa0244320:intron 55.0%
CGGCTAAGTGGACCGGCAGC+AGG - chr2_2:22560967-22560986 Msa0244320:intron 70.0%
CGGCTAAGTGGACCGGCAGC+AGG - chr2_2:22560967-22560986 Msa0244320:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 22559076 22561343 22559076 ID=Msa0244320;Name=Msa0244320
chr2_2 mRNA 22559076 22561343 22559076 ID=Msa0244320-mRNA-1;Parent=Msa0244320;Name=Msa0244320-mRNA-1;_AED=0.13;_eAED=0.13;_QI=192|1|1|1|0.75|0.6|5|272|242
chr2_2 exon 22559076 22559539 22559076 ID=Msa0244320-mRNA-1:exon:8702;Parent=Msa0244320-mRNA-1
chr2_2 exon 22559889 22560187 22559889 ID=Msa0244320-mRNA-1:exon:8701;Parent=Msa0244320-mRNA-1
chr2_2 exon 22560642 22560762 22560642 ID=Msa0244320-mRNA-1:exon:8700;Parent=Msa0244320-mRNA-1
chr2_2 exon 22561004 22561194 22561004 ID=Msa0244320-mRNA-1:exon:8699;Parent=Msa0244320-mRNA-1
chr2_2 exon 22561226 22561343 22561226 ID=Msa0244320-mRNA-1:exon:8698;Parent=Msa0244320-mRNA-1
chr2_2 five_prime_UTR 22561226 22561343 22561226 ID=Msa0244320-mRNA-1:five_prime_utr;Parent=Msa0244320-mRNA-1
chr2_2 five_prime_UTR 22561121 22561194 22561121 ID=Msa0244320-mRNA-1:five_prime_utr;Parent=Msa0244320-mRNA-1
chr2_2 CDS 22561004 22561120 22561004 ID=Msa0244320-mRNA-1:cds;Parent=Msa0244320-mRNA-1
chr2_2 CDS 22560642 22560762 22560642 ID=Msa0244320-mRNA-1:cds;Parent=Msa0244320-mRNA-1
chr2_2 CDS 22559889 22560187 22559889 ID=Msa0244320-mRNA-1:cds;Parent=Msa0244320-mRNA-1
chr2_2 CDS 22559348 22559539 22559348 ID=Msa0244320-mRNA-1:cds;Parent=Msa0244320-mRNA-1
chr2_2 three_prime_UTR 22559076 22559347 22559076 ID=Msa0244320-mRNA-1:three_prime_utr;Parent=Msa0244320-mRNA-1
Gene Sequence

>Msa0244320

ATGTTGGGTGGTGCACTTTCAACTCCTACAACTCAATGCCTCAAATCAACAAAAACAACAATTACAATGCTTTATCCATCTCCTAGATTATTGTCCACACATTTTTGTCTCTTTAAGAATCTTATAGCAGGTAATAGAAGATTTTCATCAAATGAGAGTTGTTTTCTCAGAGGTCATCAAATTAATATTAAGCAAGTTTTCGGGCTAATCTCTCGTCGTGCTCCAAGAAACAAAGCAGGACTTGTTGTTTCTCCGAGATGTGTCCTGCCACTGACAGAAGAAAATGTAGAGAAAGTTTTGGATGAAGTAAGGCCTGGTTTGATGGCTGATGGAGGGAATGTGGCATTGCATGAGATAGATGGTCTTGTTGTTATCCTCAAACTACAAGGAGCTTGTGGATCATGTCCTAGCTCAACCATGACATTGAAGATGGGGATCGAAACTCGTCTTCGCGATAAGATTCCAGAAATCTTGGAGGTTGAACAGATACTAGATACTGAGACTGGTCTTGAGCTAACCGAAGAAAATGTCGAAAGTGTTCTTTCAGAAATTAGACCATATCTTATTGGAACTGGGGGAGGAACATTAGAGCTTGTTGAGATTAATGATTACATCATTAAAGTTCGGCTAAGTGGACCGGCAGCAGGAGTTATGACAGTTCGTGTTGCGTTAACACAGAAGCTGAGAGACAAGATACCTTCTATTGCTGCTGTGCAGCTAATAGAATGA

Protein sequence

>Msa0244320

MLGGALSTPTTQCLKSTKTTITMLYPSPRLLSTHFCLFKNLIAGNRRFSSNESCFLRGHQINIKQVFGLISRRAPRNKAGLVVSPRCVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQILDTETGLELTEENVESVLSEIRPYLIGTGGGTLELVEINDYIIKVRLSGPAAGVMTVRVALTQKLRDKIPSIAAVQLIE*