AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1214080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1214080 MtrunA17_Chr4g0062381 96.273 322 12 0 1 322 1 322 0.0 639
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1214080 AT1G74070.1 59.582 287 105 3 39 322 35 313 1.35e-109 322
Msa1214080 AT1G74070.2 55.906 254 101 3 39 289 35 280 5.54e-86 260

Find 95 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTGCTTGCTGCTCCTTT+TGG 0.182599 8_1:+74571309 Msa1214080:CDS
GTAATGACAACTTTGGAATA+AGG 0.264096 8_1:-74572233 None:intergenic
GTCTGCCACATGATTGTAAA+TGG 0.266936 8_1:+74572381 Msa1214080:three_prime_UTR
AACAGCTTAATCAGAGAAAT+TGG 0.267364 8_1:+74571061 Msa1214080:five_prime_UTR
TGTTATACTCACCTAAAATA+TGG 0.299921 8_1:-74571994 None:intergenic
GATGCTTCGTCTCTGGTAAT+TGG 0.300640 8_1:+74571898 Msa1214080:CDS
TAACAAAACAGGAAGCAATT+TGG 0.303924 8_1:+74571651 Msa1214080:CDS
CGCGTTACTATAGAGCTTTA+TGG 0.332569 8_1:+74571478 Msa1214080:CDS
AGCATTTCTCTGCTTATTGT+TGG 0.338601 8_1:-74571121 None:intergenic
TAATGACAACTTTGGAATAA+GGG 0.342912 8_1:-74572232 None:intergenic
AACTTAGGAGGTGGCTTTGA+TGG 0.344521 8_1:-74571769 None:intergenic
TGTTGGCACTGCTTAGGAAT+TGG 0.350527 8_1:-74571104 None:intergenic
GTCTTCTTCTGCTCTTGCTC+TGG 0.354844 8_1:-74571341 None:intergenic
AACAGGGTGGCGAAGCTTAT+AGG 0.358689 8_1:+74572170 Msa1214080:intron
GCCACCTCCTAAGTTTAAAC+TGG 0.368651 8_1:+74571777 Msa1214080:CDS
CATCCACCCCATAGGATCTA+AGG 0.375393 8_1:-74571618 None:intergenic
CTGCATTGCTGTTTGAGGTT+CGG 0.381738 8_1:-74571253 None:intergenic
CCGCCATGTTGGACGTAATT+CGG 0.383851 8_1:-74571595 None:intergenic
CATGGCGGCCTTAGATCCTA+TGG 0.389798 8_1:+74571610 Msa1214080:CDS
AAAGTTGGAACCGATCCTAA+TGG 0.393333 8_1:+74571835 Msa1214080:CDS
GCTTATTGTTGGCACTGCTT+AGG 0.399030 8_1:-74571110 None:intergenic
AGGGAACTTCGCAGTACTCT+TGG 0.405840 8_1:-74571151 None:intergenic
ACAATCTGCATTGCTGTTTG+AGG 0.408519 8_1:-74571258 None:intergenic
CTTGCAACCAGTTTAAACTT+AGG 0.413428 8_1:-74571784 None:intergenic
ACCAACTGGTTCCCGATCAA+TGG 0.415669 8_1:-74571455 None:intergenic
ATGACAAATTCTGTCCCATT+AGG 0.423603 8_1:-74571850 None:intergenic
CTTTGACGTATCCATTGATC+GGG 0.436764 8_1:+74571444 Msa1214080:CDS
AGAATGTATGAGAAATGTCC+TGG 0.443238 8_1:+74571703 Msa1214080:CDS
CTCTCCTAGTTTGTCACTGT+TGG 0.443248 8_1:-74571368 None:intergenic
ACAGTTTGTAATGACAACTT+TGG 0.444850 8_1:-74572240 None:intergenic
GCGGAGCTTGCTAACAAAAC+AGG 0.446987 8_1:+74571640 Msa1214080:CDS
GGAACTAGATGCTTCGTCTC+TGG 0.450535 8_1:+74571891 Msa1214080:CDS
TTTAAACTGGTTGCAAGACT+AGG 0.453783 8_1:+74571790 Msa1214080:CDS
TCTGCCACATGATTGTAAAT+GGG 0.462386 8_1:+74572382 Msa1214080:three_prime_UTR
AGGATACTTTAGAGATTTCG+TGG 0.466773 8_1:-74570966 None:intergenic
TGGAAGGGTGGTAGGAGGAA+TGG 0.470072 8_1:+74571918 Msa1214080:CDS
CTCTGGATCCATTACCCAAA+AGG 0.474174 8_1:-74571324 None:intergenic
AAGTTGGAACCGATCCTAAT+GGG 0.474495 8_1:+74571836 Msa1214080:CDS
TCTATAGTAACGCGACCAAC+TGG 0.483195 8_1:-74571469 None:intergenic
TTCGGAAAATGTGGTGTAGT+TGG 0.485464 8_1:-74571235 None:intergenic
CTAAACCTCTCAACTCCTGC+AGG 0.485637 8_1:-74571511 None:intergenic
CTGGTAATTGGAAGGGTGGT+AGG 0.487495 8_1:+74571910 Msa1214080:CDS
AGGGCTGTTGTTGCAGAAAG+AGG 0.493060 8_1:+74572200 Msa1214080:CDS
GGGAACTTCGCAGTACTCTT+GGG 0.493561 8_1:-74571150 None:intergenic
TCTTTGACGTATCCATTGAT+CGG 0.498398 8_1:+74571443 Msa1214080:CDS
TTAAACTGGTTGCAAGACTA+GGG 0.504883 8_1:+74571791 Msa1214080:CDS
AAGATTGTCAGTGGAGCTGC+TGG 0.505949 8_1:+74571535 Msa1214080:CDS
GTATGAGATGAAGGGTTGAA+TGG 0.507928 8_1:-74571178 None:intergenic
ACTTAGGAGGTGGCTTTGAT+GGG 0.509206 8_1:-74571768 None:intergenic
AGGATCTAAGGCCGCCATGT+TGG 0.511340 8_1:-74571606 None:intergenic
GGTGCTGTTGTATGAGATGA+AGG 0.511459 8_1:-74571187 None:intergenic
CTTCGTCTCTGGTAATTGGA+AGG 0.515812 8_1:+74571902 Msa1214080:CDS
TGGCAGACGGCAAATAGAGT+TGG 0.529294 8_1:-74572366 None:intergenic
GGTTGTACAGAAGATTAGTC+AGG 0.532433 8_1:+74571942 Msa1214080:CDS
ACCAGTTTAAACTTAGGAGG+TGG 0.532545 8_1:-74571778 None:intergenic
CATTGCAACAAAGGATTCGC+CGG 0.533779 8_1:+74571870 Msa1214080:CDS
GATTTCGTGGATAAGAAAGA+TGG 0.538652 8_1:-74570953 None:intergenic
AGAATTTGTCATTGCAACAA+AGG 0.539538 8_1:+74571861 Msa1214080:CDS
ATGGCGGCCTTAGATCCTAT+GGG 0.543875 8_1:+74571611 Msa1214080:CDS
GCAACCAGTTTAAACTTAGG+AGG 0.546988 8_1:-74571781 None:intergenic
TAGATCCTATGGGGTGGATG+CGG 0.551281 8_1:+74571621 Msa1214080:CDS
TATGGAGATGATGTCCCTGC+AGG 0.554714 8_1:+74571496 Msa1214080:CDS
AGGTTTAGCAAGATTGTCAG+TGG 0.558164 8_1:+74571526 Msa1214080:CDS
AGAGACGAAGCATCTAGTTC+CGG 0.559488 8_1:-74571889 None:intergenic
ATGAAGGGTTGAATGGTTGA+AGG 0.561851 8_1:-74571171 None:intergenic
TGAAGGGTTGAATGGTTGAA+GGG 0.564610 8_1:-74571170 None:intergenic
AATAACAATAGATAGAGTAA+AGG 0.569079 8_1:-74570986 None:intergenic
GTAATTGGAAGGGTGGTAGG+AGG 0.574187 8_1:+74571913 Msa1214080:CDS
GTGGTGTAGTTGGTAACAGT+TGG 0.581098 8_1:-74571225 None:intergenic
GTTACCAACAGTGACAAACT+AGG 0.582532 8_1:+74571364 Msa1214080:CDS
AAGCTCCGCATCCACCCCAT+AGG 0.584857 8_1:-74571626 None:intergenic
AAATTCTGTCCCATTAGGAT+CGG 0.586133 8_1:-74571845 None:intergenic
CTGCCACATGATTGTAAATG+GGG 0.589314 8_1:+74572383 Msa1214080:three_prime_UTR
TCCATTGATCGGGAACCAGT+TGG 0.591132 8_1:+74571454 Msa1214080:CDS
TTCGTCTCTGGTAATTGGAA+GGG 0.597402 8_1:+74571903 Msa1214080:CDS
AAAGTTGTCATTACAAACTG+TGG 0.597691 8_1:+74572242 Msa1214080:CDS
ATGTCCCTGCAGGAGTTGAG+AGG 0.600392 8_1:+74571506 Msa1214080:CDS
GAATGTATGAGAAATGTCCT+GGG 0.610046 8_1:+74571704 Msa1214080:CDS
ATTTACAATCATGTGGCAGA+CGG 0.613378 8_1:-74572379 None:intergenic
CGGCCTTAGATCCTATGGGG+TGG 0.615240 8_1:+74571615 Msa1214080:CDS
GTCTCTGGTAATTGGAAGGG+TGG 0.619303 8_1:+74571906 Msa1214080:CDS
CGAAGCTTATAGGAGACAAG+AGG 0.623848 8_1:+74572180 Msa1214080:CDS
CTGCTGGTATAAGCTACAGA+AGG 0.626888 8_1:+74571551 Msa1214080:CDS
TTTCCCCATTTACAATCATG+TGG 0.628818 8_1:-74572386 None:intergenic
AAGGGTGGTAGGAGGAATGG+AGG 0.630447 8_1:+74571921 Msa1214080:CDS
ATGCCGAATTACGTCCAACA+TGG 0.635402 8_1:+74571592 Msa1214080:CDS
TGTTTGAGGTTCGGAAAATG+TGG 0.637850 8_1:-74571244 None:intergenic
CAACAGTGACAAACTAGGAG+AGG 0.642455 8_1:+74571369 Msa1214080:CDS
GAAGCTTATAGGAGACAAGA+GGG 0.659815 8_1:+74572181 Msa1214080:CDS
TAAACCTCTCAACTCCTGCA+GGG 0.669293 8_1:-74571510 None:intergenic
TGACAACTTTGGAATAAGGG+CGG 0.673460 8_1:-74572229 None:intergenic
AGTTGGAATGATGAATGTGA+TGG 0.685268 8_1:-74571208 None:intergenic
GTGCTGTTGTATGAGATGAA+GGG 0.688030 8_1:-74571186 None:intergenic
CCGAATTACGTCCAACATGG+CGG 0.693184 8_1:+74571595 Msa1214080:CDS
TGGCGGCCTTAGATCCTATG+GGG 0.704631 8_1:+74571612 Msa1214080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTATATTGTTATATAAC+AGG + chr8_1:74572153-74572172 Msa1214080:intron 10.0%
!! ATTTATATTGTTATATAACA+GGG + chr8_1:74572154-74572173 Msa1214080:intron 10.0%
!! TATTTATATTGTTATATAAC+AGG + chr8_1:74572153-74572172 Msa1214080:intron 10.0%
!! ATTTATATTGTTATATAACA+GGG + chr8_1:74572154-74572173 Msa1214080:intron 10.0%
!! ATACAAATGATTAATAAACA+GGG - chr8_1:74572136-74572155 None:intergenic 15.0%
!! AATACAAATGATTAATAAAC+AGG - chr8_1:74572137-74572156 None:intergenic 15.0%
!! ATACAAATGATTAATAAACA+GGG - chr8_1:74572136-74572155 None:intergenic 15.0%
!! AATACAAATGATTAATAAAC+AGG - chr8_1:74572137-74572156 None:intergenic 15.0%
!! AATAACAATAGATAGAGTAA+AGG - chr8_1:74570989-74571008 None:intergenic 20.0%
!! AATAACAATAGATAGAGTAA+AGG - chr8_1:74570989-74571008 None:intergenic 20.0%
!!! TTTTTTAGGTAGCTGATTAT+GGG - chr8_1:74571037-74571056 None:intergenic 25.0%
!!! TTTTTTTAGGTAGCTGATTA+TGG - chr8_1:74571038-74571057 None:intergenic 25.0%
! TAATCAGCTACCTAAAAAAA+AGG + chr8_1:74571038-74571057 Msa1214080:five_prime_UTR 25.0%
!!! TTAAGCTGTTCCTTTTTTTT+AGG - chr8_1:74571051-74571070 None:intergenic 25.0%
!!! TCAAAGAAAACTTGTTTTGT+TGG - chr8_1:74571430-74571449 None:intergenic 25.0%
! TGTTATACTCACCTAAAATA+TGG - chr8_1:74571997-74572016 None:intergenic 25.0%
! TATATTGTTATATAACAGGG+TGG + chr8_1:74572157-74572176 Msa1214080:intron 25.0%
!!! TAATGACAACTTTGGAATAA+GGG - chr8_1:74572235-74572254 None:intergenic 25.0%
!!! TTTTTTAGGTAGCTGATTAT+GGG - chr8_1:74571037-74571056 None:intergenic 25.0%
!!! TTTTTTTAGGTAGCTGATTA+TGG - chr8_1:74571038-74571057 None:intergenic 25.0%
! TAATCAGCTACCTAAAAAAA+AGG + chr8_1:74571038-74571057 Msa1214080:five_prime_UTR 25.0%
!!! TTAAGCTGTTCCTTTTTTTT+AGG - chr8_1:74571051-74571070 None:intergenic 25.0%
!!! TCAAAGAAAACTTGTTTTGT+TGG - chr8_1:74571430-74571449 None:intergenic 25.0%
! TGTTATACTCACCTAAAATA+TGG - chr8_1:74571997-74572016 None:intergenic 25.0%
! TATATTGTTATATAACAGGG+TGG + chr8_1:74572157-74572176 Msa1214080:intron 25.0%
!!! TAATGACAACTTTGGAATAA+GGG - chr8_1:74572235-74572254 None:intergenic 25.0%
AACAGCTTAATCAGAGAAAT+TGG + chr8_1:74571061-74571080 Msa1214080:five_prime_UTR 30.0%
TAACAAAACAGGAAGCAATT+TGG + chr8_1:74571651-74571670 Msa1214080:CDS 30.0%
!! TGAAAAACTTGTTGAGGAAT+GGG + chr8_1:74571678-74571697 Msa1214080:CDS 30.0%
GAGATTGATCAAGAAAAAGT+TGG + chr8_1:74571820-74571839 Msa1214080:CDS 30.0%
AGAATTTGTCATTGCAACAA+AGG + chr8_1:74571861-74571880 Msa1214080:CDS 30.0%
!! GTAATGACAACTTTGGAATA+AGG - chr8_1:74572236-74572255 None:intergenic 30.0%
ACAGTTTGTAATGACAACTT+TGG - chr8_1:74572243-74572262 None:intergenic 30.0%
AAAGTTGTCATTACAAACTG+TGG + chr8_1:74572242-74572261 Msa1214080:CDS 30.0%
AACAGCTTAATCAGAGAAAT+TGG + chr8_1:74571061-74571080 Msa1214080:five_prime_UTR 30.0%
TAACAAAACAGGAAGCAATT+TGG + chr8_1:74571651-74571670 Msa1214080:CDS 30.0%
!! TGAAAAACTTGTTGAGGAAT+GGG + chr8_1:74571678-74571697 Msa1214080:CDS 30.0%
GAGATTGATCAAGAAAAAGT+TGG + chr8_1:74571820-74571839 Msa1214080:CDS 30.0%
AGAATTTGTCATTGCAACAA+AGG + chr8_1:74571861-74571880 Msa1214080:CDS 30.0%
!! GTAATGACAACTTTGGAATA+AGG - chr8_1:74572236-74572255 None:intergenic 30.0%
ACAGTTTGTAATGACAACTT+TGG - chr8_1:74572243-74572262 None:intergenic 30.0%
AAAGTTGTCATTACAAACTG+TGG + chr8_1:74572242-74572261 Msa1214080:CDS 30.0%
GATTTCGTGGATAAGAAAGA+TGG - chr8_1:74570956-74570975 None:intergenic 35.0%
! AGGATACTTTAGAGATTTCG+TGG - chr8_1:74570969-74570988 None:intergenic 35.0%
AGCATTTCTCTGCTTATTGT+TGG - chr8_1:74571124-74571143 None:intergenic 35.0%
AGTTGGAATGATGAATGTGA+TGG - chr8_1:74571211-74571230 None:intergenic 35.0%
TCTTTGACGTATCCATTGAT+CGG + chr8_1:74571443-74571462 Msa1214080:CDS 35.0%
!! CTGAAAAACTTGTTGAGGAA+TGG + chr8_1:74571677-74571696 Msa1214080:CDS 35.0%
AGAATGTATGAGAAATGTCC+TGG + chr8_1:74571703-74571722 Msa1214080:CDS 35.0%
GAATGTATGAGAAATGTCCT+GGG + chr8_1:74571704-74571723 Msa1214080:CDS 35.0%
CTTGCAACCAGTTTAAACTT+AGG - chr8_1:74571787-74571806 None:intergenic 35.0%
TTTAAACTGGTTGCAAGACT+AGG + chr8_1:74571790-74571809 Msa1214080:CDS 35.0%
TTAAACTGGTTGCAAGACTA+GGG + chr8_1:74571791-74571810 Msa1214080:CDS 35.0%
AAATTCTGTCCCATTAGGAT+CGG - chr8_1:74571848-74571867 None:intergenic 35.0%
ATGACAAATTCTGTCCCATT+AGG - chr8_1:74571853-74571872 None:intergenic 35.0%
! GATATCGTCACTGACTAAAA+TGG - chr8_1:74572033-74572052 None:intergenic 35.0%
CTGTTTCAAACTTGTCATGT+TGG - chr8_1:74572063-74572082 None:intergenic 35.0%
ATTTACAATCATGTGGCAGA+CGG - chr8_1:74572382-74572401 None:intergenic 35.0%
TCTGCCACATGATTGTAAAT+GGG + chr8_1:74572382-74572401 Msa1214080:three_prime_UTR 35.0%
TTTCCCCATTTACAATCATG+TGG - chr8_1:74572389-74572408 None:intergenic 35.0%
AGATGGAAATAGCTATGTTC+TGG - chr8_1:74570939-74570958 None:intergenic 35.0%
GATTTCGTGGATAAGAAAGA+TGG - chr8_1:74570956-74570975 None:intergenic 35.0%
! AGGATACTTTAGAGATTTCG+TGG - chr8_1:74570969-74570988 None:intergenic 35.0%
AGCATTTCTCTGCTTATTGT+TGG - chr8_1:74571124-74571143 None:intergenic 35.0%
AGTTGGAATGATGAATGTGA+TGG - chr8_1:74571211-74571230 None:intergenic 35.0%
TCTTTGACGTATCCATTGAT+CGG + chr8_1:74571443-74571462 Msa1214080:CDS 35.0%
!! CTGAAAAACTTGTTGAGGAA+TGG + chr8_1:74571677-74571696 Msa1214080:CDS 35.0%
AGAATGTATGAGAAATGTCC+TGG + chr8_1:74571703-74571722 Msa1214080:CDS 35.0%
GAATGTATGAGAAATGTCCT+GGG + chr8_1:74571704-74571723 Msa1214080:CDS 35.0%
CTTGCAACCAGTTTAAACTT+AGG - chr8_1:74571787-74571806 None:intergenic 35.0%
TTTAAACTGGTTGCAAGACT+AGG + chr8_1:74571790-74571809 Msa1214080:CDS 35.0%
TTAAACTGGTTGCAAGACTA+GGG + chr8_1:74571791-74571810 Msa1214080:CDS 35.0%
AAATTCTGTCCCATTAGGAT+CGG - chr8_1:74571848-74571867 None:intergenic 35.0%
ATGACAAATTCTGTCCCATT+AGG - chr8_1:74571853-74571872 None:intergenic 35.0%
! GATATCGTCACTGACTAAAA+TGG - chr8_1:74572033-74572052 None:intergenic 35.0%
CTGTTTCAAACTTGTCATGT+TGG - chr8_1:74572063-74572082 None:intergenic 35.0%
ATTTACAATCATGTGGCAGA+CGG - chr8_1:74572382-74572401 None:intergenic 35.0%
TCTGCCACATGATTGTAAAT+GGG + chr8_1:74572382-74572401 Msa1214080:three_prime_UTR 35.0%
TTTCCCCATTTACAATCATG+TGG - chr8_1:74572389-74572408 None:intergenic 35.0%
TGAAGGGTTGAATGGTTGAA+GGG - chr8_1:74571173-74571192 None:intergenic 40.0%
ATGAAGGGTTGAATGGTTGA+AGG - chr8_1:74571174-74571193 None:intergenic 40.0%
GTATGAGATGAAGGGTTGAA+TGG - chr8_1:74571181-74571200 None:intergenic 40.0%
! GTGCTGTTGTATGAGATGAA+GGG - chr8_1:74571189-74571208 None:intergenic 40.0%
TTCGGAAAATGTGGTGTAGT+TGG - chr8_1:74571238-74571257 None:intergenic 40.0%
! TGTTTGAGGTTCGGAAAATG+TGG - chr8_1:74571247-74571266 None:intergenic 40.0%
!! ACAATCTGCATTGCTGTTTG+AGG - chr8_1:74571261-74571280 None:intergenic 40.0%
GTTACCAACAGTGACAAACT+AGG + chr8_1:74571364-74571383 Msa1214080:CDS 40.0%
CTTTGACGTATCCATTGATC+GGG + chr8_1:74571444-74571463 Msa1214080:CDS 40.0%
CGCGTTACTATAGAGCTTTA+TGG + chr8_1:74571478-74571497 Msa1214080:CDS 40.0%
AGGTTTAGCAAGATTGTCAG+TGG + chr8_1:74571526-74571545 Msa1214080:CDS 40.0%
ATGTCCTGGGACTAAAAATG+TGG + chr8_1:74571717-74571736 Msa1214080:CDS 40.0%
! AAAAATGTGGCTGGTAGTGT+AGG + chr8_1:74571730-74571749 Msa1214080:CDS 40.0%
ACCAGTTTAAACTTAGGAGG+TGG - chr8_1:74571781-74571800 None:intergenic 40.0%
GCAACCAGTTTAAACTTAGG+AGG - chr8_1:74571784-74571803 None:intergenic 40.0%
AAAGTTGGAACCGATCCTAA+TGG + chr8_1:74571835-74571854 Msa1214080:CDS 40.0%
AAGTTGGAACCGATCCTAAT+GGG + chr8_1:74571836-74571855 Msa1214080:CDS 40.0%
TTCGTCTCTGGTAATTGGAA+GGG + chr8_1:74571903-74571922 Msa1214080:CDS 40.0%
! GGTTGTACAGAAGATTAGTC+AGG + chr8_1:74571942-74571961 Msa1214080:CDS 40.0%
! ACACGAGCTCTCCATATTTT+AGG + chr8_1:74571983-74572002 Msa1214080:CDS 40.0%
GAAGCTTATAGGAGACAAGA+GGG + chr8_1:74572181-74572200 Msa1214080:CDS 40.0%
!! TGACAACTTTGGAATAAGGG+CGG - chr8_1:74572232-74572251 None:intergenic 40.0%
GTCTGCCACATGATTGTAAA+TGG + chr8_1:74572381-74572400 Msa1214080:three_prime_UTR 40.0%
CTGCCACATGATTGTAAATG+GGG + chr8_1:74572383-74572402 Msa1214080:three_prime_UTR 40.0%
TGAAGGGTTGAATGGTTGAA+GGG - chr8_1:74571173-74571192 None:intergenic 40.0%
ATGAAGGGTTGAATGGTTGA+AGG - chr8_1:74571174-74571193 None:intergenic 40.0%
GTATGAGATGAAGGGTTGAA+TGG - chr8_1:74571181-74571200 None:intergenic 40.0%
! GTGCTGTTGTATGAGATGAA+GGG - chr8_1:74571189-74571208 None:intergenic 40.0%
TTCGGAAAATGTGGTGTAGT+TGG - chr8_1:74571238-74571257 None:intergenic 40.0%
! TGTTTGAGGTTCGGAAAATG+TGG - chr8_1:74571247-74571266 None:intergenic 40.0%
!! ACAATCTGCATTGCTGTTTG+AGG - chr8_1:74571261-74571280 None:intergenic 40.0%
GTTACCAACAGTGACAAACT+AGG + chr8_1:74571364-74571383 Msa1214080:CDS 40.0%
CTTTGACGTATCCATTGATC+GGG + chr8_1:74571444-74571463 Msa1214080:CDS 40.0%
CGCGTTACTATAGAGCTTTA+TGG + chr8_1:74571478-74571497 Msa1214080:CDS 40.0%
AGGTTTAGCAAGATTGTCAG+TGG + chr8_1:74571526-74571545 Msa1214080:CDS 40.0%
ATGTCCTGGGACTAAAAATG+TGG + chr8_1:74571717-74571736 Msa1214080:CDS 40.0%
! AAAAATGTGGCTGGTAGTGT+AGG + chr8_1:74571730-74571749 Msa1214080:CDS 40.0%
ACCAGTTTAAACTTAGGAGG+TGG - chr8_1:74571781-74571800 None:intergenic 40.0%
GCAACCAGTTTAAACTTAGG+AGG - chr8_1:74571784-74571803 None:intergenic 40.0%
AAAGTTGGAACCGATCCTAA+TGG + chr8_1:74571835-74571854 Msa1214080:CDS 40.0%
AAGTTGGAACCGATCCTAAT+GGG + chr8_1:74571836-74571855 Msa1214080:CDS 40.0%
TTCGTCTCTGGTAATTGGAA+GGG + chr8_1:74571903-74571922 Msa1214080:CDS 40.0%
! GGTTGTACAGAAGATTAGTC+AGG + chr8_1:74571942-74571961 Msa1214080:CDS 40.0%
! ACACGAGCTCTCCATATTTT+AGG + chr8_1:74571983-74572002 Msa1214080:CDS 40.0%
GAAGCTTATAGGAGACAAGA+GGG + chr8_1:74572181-74572200 Msa1214080:CDS 40.0%
!! TGACAACTTTGGAATAAGGG+CGG - chr8_1:74572232-74572251 None:intergenic 40.0%
GTCTGCCACATGATTGTAAA+TGG + chr8_1:74572381-74572400 Msa1214080:three_prime_UTR 40.0%
CTGCCACATGATTGTAAATG+GGG + chr8_1:74572383-74572402 Msa1214080:three_prime_UTR 40.0%
TGTTGGCACTGCTTAGGAAT+TGG - chr8_1:74571107-74571126 None:intergenic 45.0%
GCTTATTGTTGGCACTGCTT+AGG - chr8_1:74571113-74571132 None:intergenic 45.0%
!! GGTGCTGTTGTATGAGATGA+AGG - chr8_1:74571190-74571209 None:intergenic 45.0%
!! GTGGTGTAGTTGGTAACAGT+TGG - chr8_1:74571228-74571247 None:intergenic 45.0%
!! CTGCATTGCTGTTTGAGGTT+CGG - chr8_1:74571256-74571275 None:intergenic 45.0%
!! TACTTGCTTGCTGCTCCTTT+TGG + chr8_1:74571309-74571328 Msa1214080:CDS 45.0%
!! ACTTGCTTGCTGCTCCTTTT+GGG + chr8_1:74571310-74571329 Msa1214080:CDS 45.0%
!! TTGCTGCTCCTTTTGGGTAA+TGG + chr8_1:74571316-74571335 Msa1214080:CDS 45.0%
CTCTGGATCCATTACCCAAA+AGG - chr8_1:74571327-74571346 None:intergenic 45.0%
! CTCTCCTAGTTTGTCACTGT+TGG - chr8_1:74571371-74571390 None:intergenic 45.0%
CAACAGTGACAAACTAGGAG+AGG + chr8_1:74571369-74571388 Msa1214080:CDS 45.0%
! GGTTTTCTTTCAGTGCAGCT+GGG - chr8_1:74571409-74571428 None:intergenic 45.0%
! TGGTTTTCTTTCAGTGCAGC+TGG - chr8_1:74571410-74571429 None:intergenic 45.0%
TCTATAGTAACGCGACCAAC+TGG - chr8_1:74571472-74571491 None:intergenic 45.0%
TAAACCTCTCAACTCCTGCA+GGG - chr8_1:74571513-74571532 None:intergenic 45.0%
CTGCTGGTATAAGCTACAGA+AGG + chr8_1:74571551-74571570 Msa1214080:CDS 45.0%
ATGCCGAATTACGTCCAACA+TGG + chr8_1:74571592-74571611 Msa1214080:CDS 45.0%
!! GGCTGCTGAAAAACTTGTTG+AGG + chr8_1:74571672-74571691 Msa1214080:CDS 45.0%
!! ACTTAGGAGGTGGCTTTGAT+GGG - chr8_1:74571771-74571790 None:intergenic 45.0%
!! AACTTAGGAGGTGGCTTTGA+TGG - chr8_1:74571772-74571791 None:intergenic 45.0%
GCCACCTCCTAAGTTTAAAC+TGG + chr8_1:74571777-74571796 Msa1214080:CDS 45.0%
CATTGCAACAAAGGATTCGC+CGG + chr8_1:74571870-74571889 Msa1214080:CDS 45.0%
! AGAGACGAAGCATCTAGTTC+CGG - chr8_1:74571892-74571911 None:intergenic 45.0%
GATGCTTCGTCTCTGGTAAT+TGG + chr8_1:74571898-74571917 Msa1214080:CDS 45.0%
CTTCGTCTCTGGTAATTGGA+AGG + chr8_1:74571902-74571921 Msa1214080:CDS 45.0%
CGAAGCTTATAGGAGACAAG+AGG + chr8_1:74572180-74572199 Msa1214080:CDS 45.0%
TGTTGGCACTGCTTAGGAAT+TGG - chr8_1:74571107-74571126 None:intergenic 45.0%
GCTTATTGTTGGCACTGCTT+AGG - chr8_1:74571113-74571132 None:intergenic 45.0%
!! GGTGCTGTTGTATGAGATGA+AGG - chr8_1:74571190-74571209 None:intergenic 45.0%
!! GTGGTGTAGTTGGTAACAGT+TGG - chr8_1:74571228-74571247 None:intergenic 45.0%
!! CTGCATTGCTGTTTGAGGTT+CGG - chr8_1:74571256-74571275 None:intergenic 45.0%
!! TACTTGCTTGCTGCTCCTTT+TGG + chr8_1:74571309-74571328 Msa1214080:CDS 45.0%
!! ACTTGCTTGCTGCTCCTTTT+GGG + chr8_1:74571310-74571329 Msa1214080:CDS 45.0%
!! TTGCTGCTCCTTTTGGGTAA+TGG + chr8_1:74571316-74571335 Msa1214080:CDS 45.0%
CTCTGGATCCATTACCCAAA+AGG - chr8_1:74571327-74571346 None:intergenic 45.0%
! CTCTCCTAGTTTGTCACTGT+TGG - chr8_1:74571371-74571390 None:intergenic 45.0%
CAACAGTGACAAACTAGGAG+AGG + chr8_1:74571369-74571388 Msa1214080:CDS 45.0%
! GGTTTTCTTTCAGTGCAGCT+GGG - chr8_1:74571409-74571428 None:intergenic 45.0%
! TGGTTTTCTTTCAGTGCAGC+TGG - chr8_1:74571410-74571429 None:intergenic 45.0%
TCTATAGTAACGCGACCAAC+TGG - chr8_1:74571472-74571491 None:intergenic 45.0%
TAAACCTCTCAACTCCTGCA+GGG - chr8_1:74571513-74571532 None:intergenic 45.0%
CTGCTGGTATAAGCTACAGA+AGG + chr8_1:74571551-74571570 Msa1214080:CDS 45.0%
ATGCCGAATTACGTCCAACA+TGG + chr8_1:74571592-74571611 Msa1214080:CDS 45.0%
!! GGCTGCTGAAAAACTTGTTG+AGG + chr8_1:74571672-74571691 Msa1214080:CDS 45.0%
!! ACTTAGGAGGTGGCTTTGAT+GGG - chr8_1:74571771-74571790 None:intergenic 45.0%
!! AACTTAGGAGGTGGCTTTGA+TGG - chr8_1:74571772-74571791 None:intergenic 45.0%
GCCACCTCCTAAGTTTAAAC+TGG + chr8_1:74571777-74571796 Msa1214080:CDS 45.0%
CATTGCAACAAAGGATTCGC+CGG + chr8_1:74571870-74571889 Msa1214080:CDS 45.0%
! AGAGACGAAGCATCTAGTTC+CGG - chr8_1:74571892-74571911 None:intergenic 45.0%
GATGCTTCGTCTCTGGTAAT+TGG + chr8_1:74571898-74571917 Msa1214080:CDS 45.0%
CTTCGTCTCTGGTAATTGGA+AGG + chr8_1:74571902-74571921 Msa1214080:CDS 45.0%
CGAAGCTTATAGGAGACAAG+AGG + chr8_1:74572180-74572199 Msa1214080:CDS 45.0%
GGGAACTTCGCAGTACTCTT+GGG - chr8_1:74571153-74571172 None:intergenic 50.0%
AGGGAACTTCGCAGTACTCT+TGG - chr8_1:74571154-74571173 None:intergenic 50.0%
GTCTTCTTCTGCTCTTGCTC+TGG - chr8_1:74571344-74571363 None:intergenic 50.0%
TCCATTGATCGGGAACCAGT+TGG + chr8_1:74571454-74571473 Msa1214080:CDS 50.0%
! ACCAACTGGTTCCCGATCAA+TGG - chr8_1:74571458-74571477 None:intergenic 50.0%
TATGGAGATGATGTCCCTGC+AGG + chr8_1:74571496-74571515 Msa1214080:CDS 50.0%
CTAAACCTCTCAACTCCTGC+AGG - chr8_1:74571514-74571533 None:intergenic 50.0%
AAGATTGTCAGTGGAGCTGC+TGG + chr8_1:74571535-74571554 Msa1214080:CDS 50.0%
CCGCCATGTTGGACGTAATT+CGG - chr8_1:74571598-74571617 None:intergenic 50.0%
CCGAATTACGTCCAACATGG+CGG + chr8_1:74571595-74571614 Msa1214080:CDS 50.0%
ATGGCGGCCTTAGATCCTAT+GGG + chr8_1:74571611-74571630 Msa1214080:CDS 50.0%
CATCCACCCCATAGGATCTA+AGG - chr8_1:74571621-74571640 None:intergenic 50.0%
TAGATCCTATGGGGTGGATG+CGG + chr8_1:74571621-74571640 Msa1214080:CDS 50.0%
!! GCGGAGCTTGCTAACAAAAC+AGG + chr8_1:74571640-74571659 Msa1214080:CDS 50.0%
!!! CCAGCCACATTTTTAGTCCC+AGG - chr8_1:74571724-74571743 None:intergenic 50.0%
CCTGGGACTAAAAATGTGGC+TGG + chr8_1:74571721-74571740 Msa1214080:CDS 50.0%
GGAACTAGATGCTTCGTCTC+TGG + chr8_1:74571891-74571910 Msa1214080:CDS 50.0%
GTCTCTGGTAATTGGAAGGG+TGG + chr8_1:74571906-74571925 Msa1214080:CDS 50.0%
CTGGTAATTGGAAGGGTGGT+AGG + chr8_1:74571910-74571929 Msa1214080:CDS 50.0%
GTAATTGGAAGGGTGGTAGG+AGG + chr8_1:74571913-74571932 Msa1214080:CDS 50.0%
AACAGGGTGGCGAAGCTTAT+AGG + chr8_1:74572170-74572189 Msa1214080:intron 50.0%
AGGGCTGTTGTTGCAGAAAG+AGG + chr8_1:74572200-74572219 Msa1214080:CDS 50.0%
TGGCAGACGGCAAATAGAGT+TGG - chr8_1:74572369-74572388 None:intergenic 50.0%
GGGAACTTCGCAGTACTCTT+GGG - chr8_1:74571153-74571172 None:intergenic 50.0%
AGGGAACTTCGCAGTACTCT+TGG - chr8_1:74571154-74571173 None:intergenic 50.0%
GTCTTCTTCTGCTCTTGCTC+TGG - chr8_1:74571344-74571363 None:intergenic 50.0%
TCCATTGATCGGGAACCAGT+TGG + chr8_1:74571454-74571473 Msa1214080:CDS 50.0%
! ACCAACTGGTTCCCGATCAA+TGG - chr8_1:74571458-74571477 None:intergenic 50.0%
TATGGAGATGATGTCCCTGC+AGG + chr8_1:74571496-74571515 Msa1214080:CDS 50.0%
CTAAACCTCTCAACTCCTGC+AGG - chr8_1:74571514-74571533 None:intergenic 50.0%
AAGATTGTCAGTGGAGCTGC+TGG + chr8_1:74571535-74571554 Msa1214080:CDS 50.0%
CCGCCATGTTGGACGTAATT+CGG - chr8_1:74571598-74571617 None:intergenic 50.0%
CCGAATTACGTCCAACATGG+CGG + chr8_1:74571595-74571614 Msa1214080:CDS 50.0%
ATGGCGGCCTTAGATCCTAT+GGG + chr8_1:74571611-74571630 Msa1214080:CDS 50.0%
CATCCACCCCATAGGATCTA+AGG - chr8_1:74571621-74571640 None:intergenic 50.0%
TAGATCCTATGGGGTGGATG+CGG + chr8_1:74571621-74571640 Msa1214080:CDS 50.0%
!! GCGGAGCTTGCTAACAAAAC+AGG + chr8_1:74571640-74571659 Msa1214080:CDS 50.0%
!!! CCAGCCACATTTTTAGTCCC+AGG - chr8_1:74571724-74571743 None:intergenic 50.0%
CCTGGGACTAAAAATGTGGC+TGG + chr8_1:74571721-74571740 Msa1214080:CDS 50.0%
GGAACTAGATGCTTCGTCTC+TGG + chr8_1:74571891-74571910 Msa1214080:CDS 50.0%
GTCTCTGGTAATTGGAAGGG+TGG + chr8_1:74571906-74571925 Msa1214080:CDS 50.0%
CTGGTAATTGGAAGGGTGGT+AGG + chr8_1:74571910-74571929 Msa1214080:CDS 50.0%
GTAATTGGAAGGGTGGTAGG+AGG + chr8_1:74571913-74571932 Msa1214080:CDS 50.0%
AACAGGGTGGCGAAGCTTAT+AGG + chr8_1:74572170-74572189 Msa1214080:intron 50.0%
AGGGCTGTTGTTGCAGAAAG+AGG + chr8_1:74572200-74572219 Msa1214080:CDS 50.0%
TGGCAGACGGCAAATAGAGT+TGG - chr8_1:74572369-74572388 None:intergenic 50.0%
ATGTCCCTGCAGGAGTTGAG+AGG + chr8_1:74571506-74571525 Msa1214080:CDS 55.0%
! AGGATCTAAGGCCGCCATGT+TGG - chr8_1:74571609-74571628 None:intergenic 55.0%
CATGGCGGCCTTAGATCCTA+TGG + chr8_1:74571610-74571629 Msa1214080:CDS 55.0%
TGGCGGCCTTAGATCCTATG+GGG + chr8_1:74571612-74571631 Msa1214080:CDS 55.0%
TGGAAGGGTGGTAGGAGGAA+TGG + chr8_1:74571918-74571937 Msa1214080:CDS 55.0%
AAGGGTGGTAGGAGGAATGG+AGG + chr8_1:74571921-74571940 Msa1214080:CDS 55.0%
ATGTCCCTGCAGGAGTTGAG+AGG + chr8_1:74571506-74571525 Msa1214080:CDS 55.0%
! AGGATCTAAGGCCGCCATGT+TGG - chr8_1:74571609-74571628 None:intergenic 55.0%
CATGGCGGCCTTAGATCCTA+TGG + chr8_1:74571610-74571629 Msa1214080:CDS 55.0%
TGGCGGCCTTAGATCCTATG+GGG + chr8_1:74571612-74571631 Msa1214080:CDS 55.0%
TGGAAGGGTGGTAGGAGGAA+TGG + chr8_1:74571918-74571937 Msa1214080:CDS 55.0%
AAGGGTGGTAGGAGGAATGG+AGG + chr8_1:74571921-74571940 Msa1214080:CDS 55.0%
CGGCCTTAGATCCTATGGGG+TGG + chr8_1:74571615-74571634 Msa1214080:CDS 60.0%
AAGCTCCGCATCCACCCCAT+AGG - chr8_1:74571629-74571648 None:intergenic 60.0%
CGGCCTTAGATCCTATGGGG+TGG + chr8_1:74571615-74571634 Msa1214080:CDS 60.0%
AAGCTCCGCATCCACCCCAT+AGG - chr8_1:74571629-74571648 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 74570938 74572425 74570938 ID=Msa1214080;Name=Msa1214080
chr8_1 mRNA 74570938 74572425 74570938 ID=Msa1214080-mRNA-1;Parent=Msa1214080;Name=Msa1214080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=201|1|1|1|1|1|2|148|322
chr8_1 exon 74570938 74572004 74570938 ID=Msa1214080-mRNA-1:exon:25508;Parent=Msa1214080-mRNA-1
chr8_1 exon 74572175 74572425 74572175 ID=Msa1214080-mRNA-1:exon:25509;Parent=Msa1214080-mRNA-1
chr8_1 five_prime_UTR 74570938 74571138 74570938 ID=Msa1214080-mRNA-1:five_prime_utr;Parent=Msa1214080-mRNA-1
chr8_1 CDS 74571139 74572004 74571139 ID=Msa1214080-mRNA-1:cds;Parent=Msa1214080-mRNA-1
chr8_1 CDS 74572175 74572277 74572175 ID=Msa1214080-mRNA-1:cds;Parent=Msa1214080-mRNA-1
chr8_1 three_prime_UTR 74572278 74572425 74572278 ID=Msa1214080-mRNA-1:three_prime_utr;Parent=Msa1214080-mRNA-1
Gene Sequence

>Msa1214080

ATGCTACAACACCCAAGAGTACTGCGAAGTTCCCTTCAACCATTCAACCCTTCATCTCATACAACAGCACCATCACATTCATCATTCCAACTGTTACCAACTACACCACATTTTCCGAACCTCAAACAGCAATGCAGATTGTCGCGTAGAGAGCTCGCAATCTACAGCAATACTTGCTTGCTGCTCCTTTTGGGTAATGGATCCAGAGCAAGAGCAGAAGAAGACGTTACCAACAGTGACAAACTAGGAGAGGATTTGACTAAAACTCCCAGCTGCACTGAAAGAAAACCAACAAAACAAGTTTTCTTTGACGTATCCATTGATCGGGAACCAGTTGGTCGCGTTACTATAGAGCTTTATGGAGATGATGTCCCTGCAGGAGTTGAGAGGTTTAGCAAGATTGTCAGTGGAGCTGCTGGTATAAGCTACAGAAGGAAAGAGTTTGTCAAAATCATGCCGAATTACGTCCAACATGGCGGCCTTAGATCCTATGGGGTGGATGCGGAGCTTGCTAACAAAACAGGAAGCAATTTGGCTGCTGAAAAACTTGTTGAGGAATGGGAGAGAATGTATGAGAAATGTCCTGGGACTAAAAATGTGGCTGGTAGTGTAGGAATCATTGTGAGAGACCCATCAAAGCCACCTCCTAAGTTTAAACTGGTTGCAAGACTAGGGAAGCTAGAGATTGATCAAGAAAAAGTTGGAACCGATCCTAATGGGACAGAATTTGTCATTGCAACAAAGGATTCGCCGGAACTAGATGCTTCGTCTCTGGTAATTGGAAGGGTGGTAGGAGGAATGGAGGTTGTACAGAAGATTAGTCAGGTAAAAACTGTACAAGAGAACACGAGCTCTCCATATTTTAGGGTGGCGAAGCTTATAGGAGACAAGAGGGCTGTTGTTGCAGAAAGAGGATTCAACCGCCCTTATTCCAAAGTTGTCATTACAAACTGTGGTGTAATACAGTAG

Protein sequence

>Msa1214080

MLQHPRVLRSSLQPFNPSSHTTAPSHSSFQLLPTTPHFPNLKQQCRLSRRELAIYSNTCLLLLLGNGSRARAEEDVTNSDKLGEDLTKTPSCTERKPTKQVFFDVSIDREPVGRVTIELYGDDVPAGVERFSKIVSGAAGISYRRKEFVKIMPNYVQHGGLRSYGVDAELANKTGSNLAAEKLVEEWERMYEKCPGTKNVAGSVGIIVRDPSKPPPKFKLVARLGKLEIDQEKVGTDPNGTEFVIATKDSPELDASSLVIGRVVGGMEVVQKISQVKTVQENTSSPYFRVAKLIGDKRAVVAERGFNRPYSKVVITNCGVIQ*