AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1075120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1075120 MtrunA17_Chr7g0258361 98.718 234 3 0 1 234 1 234 2.19e-175 481
Msa1075120 MtrunA17_Chr4g0006411 34.177 158 102 2 39 194 50 207 2.89e-25 99.0
Msa1075120 MtrunA17_Chr3g0116671 26.596 188 134 1 17 200 52 239 3.74e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1075120 AT2G42220.1 64.286 224 76 1 4 227 10 229 2.20e-107 309
Msa1075120 AT3G08920.1 36.478 159 99 2 39 195 37 195 2.92e-29 109
Msa1075120 AT4G24750.1 29.747 158 109 2 44 200 85 241 3.08e-17 79.3

Find 62 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACATCTTAAACATTTAAA+TGG 0.147291 7_2:+73231059 None:intergenic
ATGTTATGCATGCTACATTT+TGG 0.221380 7_2:+73231695 None:intergenic
AAAGATGAAGACTATGTAAT+TGG 0.249618 7_2:+73230957 None:intergenic
CTGTAGGTACAATCTTATTA+AGG 0.285743 7_2:-73232843 Msa1075120:intron
ACAATCAAGAGTTTAGTTTC+AGG 0.354432 7_2:+73232727 None:intergenic
TTCACGGATTGTACGAAATC+AGG 0.363278 7_2:+73232763 None:intergenic
AAGGAACTTGTAAAAGTAGA+TGG 0.379059 7_2:-73233316 Msa1075120:CDS
CTGATCCAACTGGTCCCTTC+AGG 0.389584 7_2:-73231333 Msa1075120:CDS
ATCAGCTTCTCTGCTTGATC+AGG 0.390870 7_2:+73231351 None:intergenic
CACAATGCAAGGAGCATGCC+AGG 0.391332 7_2:-73233418 Msa1075120:CDS
GGAAAGAGATAACGTTAGTA+TGG 0.396209 7_2:-73231190 Msa1075120:three_prime_UTR
GATTGTACGAAATCAGGATT+TGG 0.406296 7_2:+73232769 None:intergenic
GAATGCTGGCAAAGCTGGTT+TGG 0.410102 7_2:-73231524 Msa1075120:CDS
TAAACTCTTGATTGTATGTC+AGG 0.411361 7_2:-73232719 Msa1075120:CDS
TGCAGCAGCAAATAAGTTAG+AGG 0.420677 7_2:-73231728 Msa1075120:CDS
GACATCTTAAACATTTAAAT+GGG 0.429935 7_2:+73231060 None:intergenic
TTGCAGAATGCTGGCAAAGC+TGG 0.432034 7_2:-73231529 Msa1075120:CDS
GCAGGGACATTTGAATCTGT+TGG 0.432037 7_2:-73231562 Msa1075120:intron
TGGTTCTTCAATACGGTACA+TGG 0.438177 7_2:+73230977 None:intergenic
TGTTGATGTGAATGAGGTTA+TGG 0.442191 7_2:-73231216 Msa1075120:three_prime_UTR
AATGTAGCATGCATAACATC+TGG 0.456689 7_2:-73231691 Msa1075120:CDS
CATTGAGATACTAGCTTCCC+TGG 0.458379 7_2:+73233400 None:intergenic
AGGCTGTATTTGACTCTTCA+CGG 0.462274 7_2:+73232747 None:intergenic
TCGACGGAGTTGCAGAATGC+TGG 0.475813 7_2:-73231538 Msa1075120:CDS
ACACACATTCTCACAATGGC+AGG 0.476693 7_2:-73233644 Msa1075120:exon
ATGTAATTGGTTCTTCAATA+CGG 0.484390 7_2:+73230970 None:intergenic
AGCAGAGAAGCTGATCCAAC+TGG 0.489566 7_2:-73231343 Msa1075120:CDS
TTCAAACATCGTACGTTGCT+AGG 0.495876 7_2:-73231020 Msa1075120:three_prime_UTR
GCAAATAAGTTAGAGGATGC+TGG 0.503197 7_2:-73231721 Msa1075120:CDS
TCAGCAACTTAGGGAGATGT+TGG 0.512330 7_2:-73233456 Msa1075120:intron
TAACGTTAGTATGGCTATCA+TGG 0.513779 7_2:-73231181 Msa1075120:three_prime_UTR
TCAGGATTTGGCCTAGTGAA+TGG 0.518571 7_2:+73232781 None:intergenic
GAAAATACAGACAATGATCC+TGG 0.526626 7_2:-73233211 Msa1075120:intron
CTCTGCTTGATCAGGAAAGA+AGG 0.530924 7_2:+73231359 None:intergenic
CAACTTAGGGAGATGTTGGT+TGG 0.543322 7_2:-73233452 Msa1075120:CDS
CTCTTGATTGTATGTCAGGA+AGG 0.544077 7_2:-73232715 Msa1075120:CDS
TTGTATGTCAGGAAGGATTG+AGG 0.546160 7_2:-73232708 Msa1075120:intron
GAAATGTGAGACTAGAATTG+AGG 0.547284 7_2:-73231251 Msa1075120:three_prime_UTR
ATTTGAATCTGTTGGCTCGA+CGG 0.558341 7_2:-73231554 Msa1075120:CDS
CTTAGCCTGAAGGGACCAGT+TGG 0.559659 7_2:+73231328 None:intergenic
TCTTCGGGATACCATTCACT+AGG 0.560518 7_2:-73232792 Msa1075120:CDS
TGTAACAGCTGATGATGCTA+AGG 0.563299 7_2:-73233335 Msa1075120:CDS
GGACTGCTTTCTCAACCTCC+TGG 0.569209 7_2:-73233622 Msa1075120:intron
ATGTAACATGCAGTATGTGA+GGG 0.569972 7_2:+73231275 None:intergenic
GCTGGTTTGGTGCAAATCCA+AGG 0.574370 7_2:-73231511 Msa1075120:CDS
AAGTAAATTACCGCCGCAGT+GGG 0.576372 7_2:+73231139 None:intergenic
TATCTCAATGTAAAATGAGA+AGG 0.578861 7_2:-73233387 Msa1075120:CDS
TATGTAACATGCAGTATGTG+AGG 0.606423 7_2:+73231274 None:intergenic
AAACCATGTTGATGTGAATG+AGG 0.609527 7_2:-73231222 Msa1075120:three_prime_UTR
AGGGGAAAACAACTAATCGA+TGG 0.616369 7_2:+73231294 None:intergenic
GATATAATGTTCTTGATGTG+AGG 0.619269 7_2:-73233294 Msa1075120:CDS
GGACTTCAAACTGTGAAACC+AGG 0.620690 7_2:-73231670 Msa1075120:intron
ATGTGAATGAGGTTATGGAA+TGG 0.634776 7_2:-73231211 Msa1075120:three_prime_UTR
ATATAATGTTCTTGATGTGA+GGG 0.640539 7_2:-73233293 Msa1075120:CDS
ACAATGCAAGGAGCATGCCA+GGG 0.648008 7_2:-73233417 Msa1075120:CDS
CACACATTCTCACAATGGCA+GGG 0.653331 7_2:-73233643 Msa1075120:exon
AAAGTAAATTACCGCCGCAG+TGG 0.654824 7_2:+73231138 None:intergenic
TGTAACATGCAGTATGTGAG+GGG 0.678590 7_2:+73231276 None:intergenic
TAACCTCATTCACATCAACA+TGG 0.685588 7_2:+73231219 None:intergenic
ACAAACACACATTCTCACAA+TGG 0.693697 7_2:-73233648 Msa1075120:exon
GATTGTCTATCCCACTGCGG+CGG 0.704448 7_2:-73231149 Msa1075120:three_prime_UTR
CTAGATTGTCTATCCCACTG+CGG 0.791842 7_2:-73231152 Msa1075120:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATTATCAATCAAAAA+GGG + chr7_2:73231925-73231944 None:intergenic 10.0%
!! TATATAATTATCAATCAAAA+AGG + chr7_2:73231926-73231945 None:intergenic 10.0%
!!! AAATTAATTTTTGAATATTG+TGG + chr7_2:73232139-73232158 None:intergenic 10.0%
!! TATTATTCTTAAAAGATAAA+CGG + chr7_2:73232988-73233007 None:intergenic 10.0%
!!! ATAGTATAAATAATTTTGGA+AGG + chr7_2:73231416-73231435 None:intergenic 15.0%
!!! ATGCATAGTATAAATAATTT+TGG + chr7_2:73231420-73231439 None:intergenic 15.0%
!! GAAAATTCAAAGTTAAGATA+AGG + chr7_2:73230998-73231017 None:intergenic 20.0%
!!! CATTTTAGTTTTGAAATTGT+AGG - chr7_2:73231464-73231483 Msa1075120:intron 20.0%
!!! CAAACATTTTGAAATAATTC+TGG - chr7_2:73231515-73231534 Msa1075120:CDS 20.0%
!! ATAGAAATTTAAGTATGTGT+GGG - chr7_2:73232645-73232664 Msa1075120:intron 20.0%
!! ATTTATACAGAATACTATGT+TGG + chr7_2:73232694-73232713 None:intergenic 20.0%
!!! TTCTGTTTTATGAAATTTTC+AGG - chr7_2:73233190-73233209 Msa1075120:intron 20.0%
!! GACATCTTAAACATTTAAAT+GGG + chr7_2:73233532-73233551 None:intergenic 20.0%
!! TGACATCTTAAACATTTAAA+TGG + chr7_2:73233533-73233552 None:intergenic 20.0%
! AACATGATTATGAGTGATTA+AGG - chr7_2:73231102-73231121 Msa1075120:three_prime_UTR 25.0%
! TATCTCAATGTAAAATGAGA+AGG - chr7_2:73231202-73231221 Msa1075120:three_prime_UTR 25.0%
! ATATAATGTTCTTGATGTGA+GGG - chr7_2:73231296-73231315 Msa1075120:three_prime_UTR 25.0%
!! TCTGTATTTTCAACAAAAAG+AGG + chr7_2:73231369-73231388 None:intergenic 25.0%
!! TTTTAGACTGTACATAATGA+TGG + chr7_2:73232038-73232057 None:intergenic 25.0%
!! ATAATAAATGTCCTTTTGTG+AGG + chr7_2:73232544-73232563 None:intergenic 25.0%
! CATAGAAATTTAAGTATGTG+TGG - chr7_2:73232644-73232663 Msa1075120:intron 25.0%
!! GGAATTACTAATTTGAAGTT+CGG - chr7_2:73232666-73232685 Msa1075120:intron 25.0%
!! AACTCAACTTATTTGCTAAT+GGG + chr7_2:73232736-73232755 None:intergenic 25.0%
!! AAACTCAACTTATTTGCTAA+TGG + chr7_2:73232737-73232756 None:intergenic 25.0%
!! TTCAAGTTATGCAAATTCAT+AGG + chr7_2:73232779-73232798 None:intergenic 25.0%
! AAATCTCCATATATATCTCA+AGG + chr7_2:73232814-73232833 None:intergenic 25.0%
!! TAATTTTTCCTTCTTTGTCA+AGG - chr7_2:73232833-73232852 Msa1075120:CDS 25.0%
! TTAAAATATATCCATTCTGC+AGG - chr7_2:73233009-73233028 Msa1075120:intron 25.0%
! TAAAATATATCCATTCTGCA+GGG - chr7_2:73233010-73233029 Msa1075120:intron 25.0%
!!! AAAGACATTGTTTTGCATAA+TGG + chr7_2:73233477-73233496 None:intergenic 25.0%
!! ATGTAATTGGTTCTTCAATA+CGG + chr7_2:73233622-73233641 None:intergenic 25.0%
! AAAGATGAAGACTATGTAAT+TGG + chr7_2:73233635-73233654 None:intergenic 25.0%
TAGTAAAAACTCACAATGCA+AGG - chr7_2:73231160-73231179 Msa1075120:three_prime_UTR 30.0%
AAGGAACTTGTAAAAGTAGA+TGG - chr7_2:73231273-73231292 Msa1075120:three_prime_UTR 30.0%
GATATAATGTTCTTGATGTG+AGG - chr7_2:73231295-73231314 Msa1075120:three_prime_UTR 30.0%
TAAAAAACATTTATCCCTCC+AGG - chr7_2:73231551-73231570 Msa1075120:CDS 30.0%
!! AAATGGACTAATGTGATGAA+GGG - chr7_2:73231594-73231613 Msa1075120:intron 30.0%
! TTTTAGTCCTGGAAATTGTA+GGG + chr7_2:73231666-73231685 None:intergenic 30.0%
!! ATTTTAGTCCTGGAAATTGT+AGG + chr7_2:73231667-73231686 None:intergenic 30.0%
CAATTTCCAGGACTAAAATA+TGG - chr7_2:73231668-73231687 Msa1075120:intron 30.0%
!!! ATGAATCCATATTTTAGTCC+TGG + chr7_2:73231677-73231696 None:intergenic 30.0%
!!! CATTTGCATTGATTTTCTGT+AGG - chr7_2:73231730-73231749 Msa1075120:CDS 30.0%
CTGTAGGTACAATCTTATTA+AGG - chr7_2:73231746-73231765 Msa1075120:intron 30.0%
! ACAGTGCACAATAATTTTTC+TGG - chr7_2:73231769-73231788 Msa1075120:intron 30.0%
! CAGTGCACAATAATTTTTCT+GGG - chr7_2:73231770-73231789 Msa1075120:intron 30.0%
! AATTTTTCTGGGTTGTTCTT+CGG - chr7_2:73231781-73231800 Msa1075120:intron 30.0%
! ACAATCAAGAGTTTAGTTTC+AGG + chr7_2:73231865-73231884 None:intergenic 30.0%
TAAACTCTTGATTGTATGTC+AGG - chr7_2:73231870-73231889 Msa1075120:intron 30.0%
CATAATGATGGTATAGTACT+TGG + chr7_2:73232026-73232045 None:intergenic 30.0%
!!! GTATTGGTTTATTTTTGTGC+TGG + chr7_2:73232101-73232120 None:intergenic 30.0%
GCACAAAAATAAACCAATAC+AGG - chr7_2:73232101-73232120 Msa1075120:intron 30.0%
TTGTACCTACAGAAAATGAT+GGG + chr7_2:73232397-73232416 None:intergenic 30.0%
ATTGTACCTACAGAAAATGA+TGG + chr7_2:73232398-73232417 None:intergenic 30.0%
GTATTCTGTATAAATCTGCA+AGG - chr7_2:73232699-73232718 Msa1075120:intron 30.0%
! TAGGAATTTTATGCTTCTTG+TGG + chr7_2:73232760-73232779 None:intergenic 30.0%
TTGTTGCCTTGAGATATATA+TGG - chr7_2:73232805-73232824 Msa1075120:CDS 30.0%
! ATGTTATGCATGCTACATTT+TGG + chr7_2:73232897-73232916 None:intergenic 30.0%
ACAAACACACATTCTCACAA+TGG - chr7_2:73230941-73230960 Msa1075120:three_prime_UTR 35.0%
AGTTAAGATAAGGAGTTACC+AGG + chr7_2:73230988-73231007 None:intergenic 35.0%
! GTTGTGTTTTCAGCAACTTA+GGG - chr7_2:73231124-73231143 Msa1075120:three_prime_UTR 35.0%
GAAAATACAGACAATGATCC+TGG - chr7_2:73231378-73231397 Msa1075120:CDS 35.0%
ATTTCAATGACCCATCCAAA+TGG - chr7_2:73231577-73231596 Msa1075120:intron 35.0%
TCACATTAGTCCATTTGGAT+GGG + chr7_2:73231590-73231609 None:intergenic 35.0%
ATCACATTAGTCCATTTGGA+TGG + chr7_2:73231591-73231610 None:intergenic 35.0%
CTTCATCACATTAGTCCATT+TGG + chr7_2:73231595-73231614 None:intergenic 35.0%
!! CAAATGGACTAATGTGATGA+AGG - chr7_2:73231593-73231612 Msa1075120:intron 35.0%
ATTTCATCCCTACAATTTCC+AGG - chr7_2:73231656-73231675 Msa1075120:intron 35.0%
! ATTTTTCTGGGTTGTTCTTC+GGG - chr7_2:73231782-73231801 Msa1075120:intron 35.0%
GATTGTACGAAATCAGGATT+TGG + chr7_2:73231823-73231842 None:intergenic 35.0%
ATATATCCCAAACTCTGCTT+TGG - chr7_2:73231941-73231960 Msa1075120:intron 35.0%
TAAACCAATACAGGTCATGT+CGG - chr7_2:73232110-73232129 Msa1075120:intron 35.0%
ATTTATTAAAGCTCTCGCGT+AGG - chr7_2:73232353-73232372 Msa1075120:intron 35.0%
CTGTAGGTACAATCTTATCA+AGG - chr7_2:73232405-73232424 Msa1075120:intron 35.0%
!!! ACCCTGCTTTTTTACATAAG+AGG - chr7_2:73232447-73232466 Msa1075120:intron 35.0%
GCCTCTTATGTAAAAAAGCA+GGG + chr7_2:73232451-73232470 None:intergenic 35.0%
AGCCTCTTATGTAAAAAAGC+AGG + chr7_2:73232452-73232471 None:intergenic 35.0%
ATTGTTGTCATGTGACTGAA+AGG + chr7_2:73232498-73232517 None:intergenic 35.0%
! ATAAATGTCCTTTTGTGAGG+AGG + chr7_2:73232541-73232560 None:intergenic 35.0%
!!! GTCTGAGGTGTTTAGTTTTT+GGG + chr7_2:73232570-73232589 None:intergenic 35.0%
! GTGTTCTTGCTATGTATTTC+AGG + chr7_2:73232625-73232644 None:intergenic 35.0%
AATGTAGCATGCATAACATC+TGG - chr7_2:73232898-73232917 Msa1075120:intron 35.0%
AACCAGGTTTAGTTGATCAT+TGG - chr7_2:73232935-73232954 Msa1075120:intron 35.0%
ATCCAATGATCAACTAAACC+TGG + chr7_2:73232940-73232959 None:intergenic 35.0%
! ACACAGCTGAAATTTTTCCT+TGG + chr7_2:73233098-73233117 None:intergenic 35.0%
AGGAAAAATTTCAGCTGTGT+TGG - chr7_2:73233098-73233117 Msa1075120:intron 35.0%
GGAAAAATTTCAGCTGTGTT+GGG - chr7_2:73233099-73233118 Msa1075120:intron 35.0%
!!! CTTTTTAGTCTTAGCCTGAA+GGG + chr7_2:73233273-73233292 None:intergenic 35.0%
!!! ACTTTTTAGTCTTAGCCTGA+AGG + chr7_2:73233274-73233293 None:intergenic 35.0%
ATGTAACATGCAGTATGTGA+GGG + chr7_2:73233317-73233336 None:intergenic 35.0%
TATGTAACATGCAGTATGTG+AGG + chr7_2:73233318-73233337 None:intergenic 35.0%
GAAATGTGAGACTAGAATTG+AGG - chr7_2:73233338-73233357 Msa1075120:CDS 35.0%
AAACCATGTTGATGTGAATG+AGG - chr7_2:73233367-73233386 Msa1075120:CDS 35.0%
TAACCTCATTCACATCAACA+TGG + chr7_2:73233373-73233392 None:intergenic 35.0%
TGTTGATGTGAATGAGGTTA+TGG - chr7_2:73233373-73233392 Msa1075120:CDS 35.0%
ATGTGAATGAGGTTATGGAA+TGG - chr7_2:73233378-73233397 Msa1075120:CDS 35.0%
GGAAAGAGATAACGTTAGTA+TGG - chr7_2:73233399-73233418 Msa1075120:CDS 35.0%
TAACGTTAGTATGGCTATCA+TGG - chr7_2:73233408-73233427 Msa1075120:CDS 35.0%
TAAGATAAGGAGTTACCAGG+AGG + chr7_2:73230985-73231004 None:intergenic 40.0%
! GGTTGTGTTTTCAGCAACTT+AGG - chr7_2:73231123-73231142 Msa1075120:three_prime_UTR 40.0%
! TGTAACAGCTGATGATGCTA+AGG - chr7_2:73231254-73231273 Msa1075120:three_prime_UTR 40.0%
TACAGACAATGATCCTGGTA+TGG - chr7_2:73231383-73231402 Msa1075120:intron 40.0%
GTCATTGAAATTGTCCTGGA+GGG + chr7_2:73231568-73231587 None:intergenic 40.0%
ATGGGTCATTGAAATTGTCC+TGG + chr7_2:73231572-73231591 None:intergenic 40.0%
! TTCACGGATTGTACGAAATC+AGG + chr7_2:73231829-73231848 None:intergenic 40.0%
AGGCTGTATTTGACTCTTCA+CGG + chr7_2:73231845-73231864 None:intergenic 40.0%
CTCTTGATTGTATGTCAGGA+AGG - chr7_2:73231874-73231893 Msa1075120:intron 40.0%
TTGTATGTCAGGAAGGATTG+AGG - chr7_2:73231881-73231900 Msa1075120:intron 40.0%
ACCAAACCAAAGCAGAGTTT+GGG + chr7_2:73231950-73231969 None:intergenic 40.0%
AACCAAACCAAAGCAGAGTT+TGG + chr7_2:73231951-73231970 None:intergenic 40.0%
GCTGGTATCATTTCTACAGT+TGG + chr7_2:73232083-73232102 None:intergenic 40.0%
GCGTAGGAGTTTCATGTAAT+AGG + chr7_2:73232194-73232213 None:intergenic 40.0%
GGGAATCATTCTCGGATATT+GGG + chr7_2:73232216-73232235 None:intergenic 40.0%
TGGGAATCATTCTCGGATAT+TGG + chr7_2:73232217-73232236 None:intergenic 40.0%
ATGATTCCCACAACCCAAAT+AGG - chr7_2:73232227-73232246 Msa1075120:intron 40.0%
!! TTCTGTCCTATTTGGGTTGT+GGG + chr7_2:73232236-73232255 None:intergenic 40.0%
GTTGTGATTGGAGGTTATCT+CGG + chr7_2:73232290-73232309 None:intergenic 40.0%
!!! GGTCTGAGGTGTTTAGTTTT+TGG + chr7_2:73232571-73232590 None:intergenic 40.0%
TATTTCAGGATAGACCTTGC+TGG + chr7_2:73232611-73232630 None:intergenic 40.0%
TGCAGCAGCAAATAAGTTAG+AGG - chr7_2:73232861-73232880 Msa1075120:intron 40.0%
GCAAATAAGTTAGAGGATGC+TGG - chr7_2:73232868-73232887 Msa1075120:intron 40.0%
ATTCAAATGTCCCTGCAGAA+TGG + chr7_2:73233023-73233042 None:intergenic 40.0%
!! ATTTGAATCTGTTGGCTCGA+CGG - chr7_2:73233035-73233054 Msa1075120:intron 40.0%
AGGGGAAAACAACTAATCGA+TGG + chr7_2:73233298-73233317 None:intergenic 40.0%
TGTAACATGCAGTATGTGAG+GGG + chr7_2:73233316-73233335 None:intergenic 40.0%
TTCAAACATCGTACGTTGCT+AGG - chr7_2:73233569-73233588 Msa1075120:intron 40.0%
TGGTTCTTCAATACGGTACA+TGG + chr7_2:73233615-73233634 None:intergenic 40.0%
ACACACATTCTCACAATGGC+AGG - chr7_2:73230945-73230964 Msa1075120:three_prime_UTR 45.0%
CACACATTCTCACAATGGCA+GGG - chr7_2:73230946-73230965 Msa1075120:three_prime_UTR 45.0%
TCAGCAACTTAGGGAGATGT+TGG - chr7_2:73231133-73231152 Msa1075120:three_prime_UTR 45.0%
CAACTTAGGGAGATGTTGGT+TGG - chr7_2:73231137-73231156 Msa1075120:three_prime_UTR 45.0%
! CATTGAGATACTAGCTTCCC+TGG + chr7_2:73231192-73231211 None:intergenic 45.0%
GGAAGGAGAAATTCCATACC+AGG + chr7_2:73231399-73231418 None:intergenic 45.0%
GGTCATTGAAATTGTCCTGG+AGG + chr7_2:73231569-73231588 None:intergenic 45.0%
TCTTCGGGATACCATTCACT+AGG - chr7_2:73231797-73231816 Msa1075120:intron 45.0%
TCAGGATTTGGCCTAGTGAA+TGG + chr7_2:73231811-73231830 None:intergenic 45.0%
TCCCAAACTCTGCTTTGGTT+TGG - chr7_2:73231946-73231965 Msa1075120:intron 45.0%
GAAACCGACATGACCTGTAT+TGG + chr7_2:73232117-73232136 None:intergenic 45.0%
TGGGTTGTGGGAATCATTCT+CGG + chr7_2:73232224-73232243 None:intergenic 45.0%
!! GTTCTGTCCTATTTGGGTTG+TGG + chr7_2:73232237-73232256 None:intergenic 45.0%
GTGGAGGTTCTGTCCTATTT+GGG + chr7_2:73232243-73232262 None:intergenic 45.0%
TGTGGAGGTTCTGTCCTATT+TGG + chr7_2:73232244-73232263 None:intergenic 45.0%
TAACCTCCAATCACAACCAG+AGG - chr7_2:73232293-73232312 Msa1075120:intron 45.0%
AACCTCCAATCACAACCAGA+GGG - chr7_2:73232294-73232313 Msa1075120:intron 45.0%
TTCATCCCTCTGGTTGTGAT+TGG + chr7_2:73232302-73232321 None:intergenic 45.0%
AACACCTCAGACCTTGATCA+CGG - chr7_2:73232578-73232597 Msa1075120:intron 45.0%
GGACTTCAAACTGTGAAACC+AGG - chr7_2:73232919-73232938 Msa1075120:intron 45.0%
GCAGGGACATTTGAATCTGT+TGG - chr7_2:73233027-73233046 Msa1075120:intron 45.0%
CTCTGCTTGATCAGGAAAGA+AGG + chr7_2:73233233-73233252 None:intergenic 45.0%
ATCAGCTTCTCTGCTTGATC+AGG + chr7_2:73233241-73233260 None:intergenic 45.0%
CTAGATTGTCTATCCCACTG+CGG - chr7_2:73233437-73233456 Msa1075120:CDS 45.0%
AAGTAAATTACCGCCGCAGT+GGG + chr7_2:73233453-73233472 None:intergenic 45.0%
AAAGTAAATTACCGCCGCAG+TGG + chr7_2:73233454-73233473 None:intergenic 45.0%
! ACAATGCAAGGAGCATGCCA+GGG - chr7_2:73231172-73231191 Msa1075120:three_prime_UTR 50.0%
CATTCTCGGATATTGGGCGT+AGG + chr7_2:73232210-73232229 None:intergenic 50.0%
ACAGAACCTCCACAATGACG+AGG - chr7_2:73232250-73232269 Msa1075120:intron 50.0%
ATCCCTCTGGTTGTGATTGG+AGG + chr7_2:73232299-73232318 None:intergenic 50.0%
AGCACACTGTTTCATCCCTC+TGG + chr7_2:73232312-73232331 None:intergenic 50.0%
ATTAAAGCTCTCGCGTAGGC+AGG - chr7_2:73232357-73232376 Msa1075120:intron 50.0%
TTAAAGCTCTCGCGTAGGCA+GGG - chr7_2:73232358-73232377 Msa1075120:intron 50.0%
! GGGGTCCCATCATTTTCTGT+AGG - chr7_2:73232389-73232408 Msa1075120:intron 50.0%
ACAATTGTACCGTTGCGCCA+AGG - chr7_2:73232513-73232532 Msa1075120:intron 50.0%
TGTTCCGTGATCAAGGTCTG+AGG + chr7_2:73232585-73232604 None:intergenic 50.0%
GCAGCAGACCTTGACAAAGA+AGG + chr7_2:73232844-73232863 None:intergenic 50.0%
TTGCAGAATGCTGGCAAAGC+TGG - chr7_2:73233060-73233079 Msa1075120:intron 50.0%
GAATGCTGGCAAAGCTGGTT+TGG - chr7_2:73233065-73233084 Msa1075120:intron 50.0%
!! GCTGGTTTGGTGCAAATCCA+AGG - chr7_2:73233078-73233097 Msa1075120:intron 50.0%
AGCAGAGAAGCTGATCCAAC+TGG - chr7_2:73233246-73233265 Msa1075120:CDS 50.0%
GGACTGCTTTCTCAACCTCC+TGG - chr7_2:73230967-73230986 Msa1075120:three_prime_UTR 55.0%
! CACAATGCAAGGAGCATGCC+AGG - chr7_2:73231171-73231190 Msa1075120:three_prime_UTR 55.0%
CTCCACAATGACGAGGACGT+GGG - chr7_2:73232257-73232276 Msa1075120:intron 55.0%
TCCACAATGACGAGGACGTG+GGG - chr7_2:73232258-73232277 Msa1075120:intron 55.0%
! CCTTTTGTGAGGAGGAGCCT+TGG + chr7_2:73232533-73232552 None:intergenic 55.0%
CCAAGGCTCCTCCTCACAAA+AGG - chr7_2:73232530-73232549 Msa1075120:intron 55.0%
CTGGCGATGTTCCGTGATCA+AGG + chr7_2:73232592-73232611 None:intergenic 55.0%
ATCACGGAACATCGCCAGCA+AGG - chr7_2:73232594-73232613 Msa1075120:intron 55.0%
TCGACGGAGTTGCAGAATGC+TGG - chr7_2:73233051-73233070 Msa1075120:intron 55.0%
CTGATCCAACTGGTCCCTTC+AGG - chr7_2:73233256-73233275 Msa1075120:CDS 55.0%
CTTAGCCTGAAGGGACCAGT+TGG + chr7_2:73233264-73233283 None:intergenic 55.0%
GATTGTCTATCCCACTGCGG+CGG - chr7_2:73233440-73233459 Msa1075120:CDS 55.0%
CCACGTCCTCGTCATTGTGG+AGG + chr7_2:73232259-73232278 None:intergenic 60.0%
CCTCCACAATGACGAGGACG+TGG - chr7_2:73232256-73232275 Msa1075120:intron 60.0%
TCCCCACGTCCTCGTCATTG+TGG + chr7_2:73232262-73232281 None:intergenic 60.0%
GCGTAGGCAGGGTCTGGAAA+GGG - chr7_2:73232369-73232388 Msa1075120:intron 60.0%
CGTAGGCAGGGTCTGGAAAG+GGG - chr7_2:73232370-73232389 Msa1075120:intron 60.0%
CGCGTAGGCAGGGTCTGGAA+AGG - chr7_2:73232368-73232387 Msa1075120:intron 65.0%
GAGGAGGAGCCTTGGCGCAA+CGG + chr7_2:73232525-73232544 None:intergenic 65.0%
GCTCTCGCGTAGGCAGGGTC+TGG - chr7_2:73232363-73232382 Msa1075120:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 73230938 73233673 73230938 ID=Msa1075120;Name=Msa1075120
chr7_2 mRNA 73230938 73233673 73230938 ID=Msa1075120-mRNA-1;Parent=Msa1075120;Name=Msa1075120-mRNA-1;_AED=0.05;_eAED=0.05;_QI=22|1|1|1|0.8|0.83|6|391|234
chr7_2 exon 73230938 73231399 73230938 ID=Msa1075120-mRNA-1:exon:17007;Parent=Msa1075120-mRNA-1
chr7_2 exon 73231476 73231580 73231476 ID=Msa1075120-mRNA-1:exon:17006;Parent=Msa1075120-mRNA-1
chr7_2 exon 73231671 73231756 73231671 ID=Msa1075120-mRNA-1:exon:17005;Parent=Msa1075120-mRNA-1
chr7_2 exon 73232709 73232859 73232709 ID=Msa1075120-mRNA-1:exon:17004;Parent=Msa1075120-mRNA-1
chr7_2 exon 73233212 73233474 73233212 ID=Msa1075120-mRNA-1:exon:17003;Parent=Msa1075120-mRNA-1
chr7_2 exon 73233623 73233673 73233623 ID=Msa1075120-mRNA-1:exon:17002;Parent=Msa1075120-mRNA-1
chr7_2 five_prime_UTR 73233652 73233673 73233652 ID=Msa1075120-mRNA-1:five_prime_utr;Parent=Msa1075120-mRNA-1
chr7_2 CDS 73233623 73233651 73233623 ID=Msa1075120-mRNA-1:cds;Parent=Msa1075120-mRNA-1
chr7_2 CDS 73233212 73233474 73233212 ID=Msa1075120-mRNA-1:cds;Parent=Msa1075120-mRNA-1
chr7_2 CDS 73232709 73232859 73232709 ID=Msa1075120-mRNA-1:cds;Parent=Msa1075120-mRNA-1
chr7_2 CDS 73231671 73231756 73231671 ID=Msa1075120-mRNA-1:cds;Parent=Msa1075120-mRNA-1
chr7_2 CDS 73231476 73231580 73231476 ID=Msa1075120-mRNA-1:cds;Parent=Msa1075120-mRNA-1
chr7_2 CDS 73231329 73231399 73231329 ID=Msa1075120-mRNA-1:cds;Parent=Msa1075120-mRNA-1
chr7_2 three_prime_UTR 73230938 73231328 73230938 ID=Msa1075120-mRNA-1:three_prime_utr;Parent=Msa1075120-mRNA-1
Gene Sequence

>Msa1075120

ATGGCAGGGACTGCTTTCTCAACCTCCTGCAACTTAGGGAGATGTTGGTTGGTAGTAAAAACTCACAATGCAAGGAGCATGCCAGGGAAGCTAGTATCTCAATGTAAAATGAGAAGGAAGTTTACAATAAAAGCAGAAATTAAGTTTGTAACAGCTGATGATGCTAAGGAACTTGTAAAAGTAGATGGATATAATGTTCTTGATGTGAGGGACAAATCTCAATATGAAAGAGCACACATTAAAACATGTTATCATGTTCCTCTTTTTGTTGAAAATACAGACAATGATCCTGGTACAATCTTATTAAGGACAGTGCACAATAATTTTTCTGGGTTGTTCTTCGGGATACCATTCACTAGGCCAAATCCTGATTTCGTACAATCCGTGAAGAGTCAAATACAGCCTGAAACTAAACTCTTGATTGTATGTCAGGAAGGATTGAGGTCTGCTGCAGCAGCAAATAAGTTAGAGGATGCTGGTTTCCAAAATGTAGCATGCATAACATCTGGACTTCAAACTGTGAAACCAGGGACATTTGAATCTGTTGGCTCGACGGAGTTGCAGAATGCTGGCAAAGCTGGTTTGGTGCAAATCCAAGGAAAAATTTCAGCTGTGTTGGGAACTGTTCTTATTTGTGCATATTTATTCATTACCTTCTTTCCTGATCAAGCAGAGAAGCTGATCCAACTGGTCCCTTCAGGCTAA

Protein sequence

>Msa1075120

MAGTAFSTSCNLGRCWLVVKTHNARSMPGKLVSQCKMRRKFTIKAEIKFVTADDAKELVKVDGYNVLDVRDKSQYERAHIKTCYHVPLFVENTDNDPGTILLRTVHNNFSGLFFGIPFTRPNPDFVQSVKSQIQPETKLLIVCQEGLRSAAAANKLEDAGFQNVACITSGLQTVKPGTFESVGSTELQNAGKAGLVQIQGKISAVLGTVLICAYLFITFFPDQAEKLIQLVPSG*