AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0202150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0202150 MtrunA17_Chr2g0299071 71.111 540 81 5 1 489 1 516 0.0 711
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0202150 AT5G56850.3 42.969 128 62 3 1 117 1 128 3.92e-25 108
Msa0202150 AT5G56850.1 42.969 128 62 3 1 117 1 128 4.95e-25 108
Msa0202150 AT5G56850.4 42.969 128 62 3 1 117 1 128 4.95e-25 108

Find 121 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCAACAGGACTTTGTAAT+TGG 0.129871 2_1:+24290355 None:intergenic
TTTGAAACAGTTACAGTTTC+AGG 0.156880 2_1:-24288951 Msa0202150:CDS
AACTGGCAGGAGTACATTTA+AGG 0.223290 2_1:-24291597 Msa0202150:intron
GGACTTACTTGATACTTTAT+TGG 0.234536 2_1:+24289299 None:intergenic
ATAAAGATTGAAACTTAATT+TGG 0.258274 2_1:+24292926 None:intergenic
TGCAGCTTCCATGGGGAAAA+TGG 0.272636 2_1:-24292642 Msa0202150:intron
ATGTTTAATAGTTATGAATT+TGG 0.277635 2_1:-24290478 Msa0202150:intron
AGAACATTGCAGATCAATAT+AGG 0.285969 2_1:-24289994 Msa0202150:intron
TATTATAGTGCTGGAATTCA+TGG 0.287052 2_1:-24292778 Msa0202150:intron
CCAGGAACAATCCTGGTTTC+AGG 0.291918 2_1:-24292882 Msa0202150:intron
CTCAAGCCATCAAAGAAGTT+TGG 0.303084 2_1:-24288868 Msa0202150:CDS
CACACAATAGCTGGTTTCAT+TGG 0.304882 2_1:-24293090 Msa0202150:five_prime_UTR
TCAGTTCCAGTTTCAGTATA+TGG 0.306914 2_1:+24288721 None:intergenic
CCCTGGTTGAACCTTCTTCT+CGG 0.314639 2_1:+24289757 None:intergenic
GATAACAGAGATGAAAATTC+TGG 0.321341 2_1:-24288637 Msa0202150:CDS
TGTCACTTTCTGCACCTCTT+TGG 0.325692 2_1:+24290630 None:intergenic
CGTGGAACTTTCTTTGTCAT+TGG 0.326048 2_1:+24290329 None:intergenic
GGACAATAGCATACCCCTTA+TGG 0.326839 2_1:+24292731 None:intergenic
AATGTACCATATACTGAAAC+TGG 0.331288 2_1:-24288727 Msa0202150:CDS
TTCTTCTGAGAGTCAACATT+TGG 0.331749 2_1:-24289261 Msa0202150:CDS
GGAAATCCAAACTTCTTTGA+TGG 0.341594 2_1:+24288862 None:intergenic
ATTAGCCATAAAAGATTGAT+TGG 0.346699 2_1:+24293137 None:intergenic
TCAAAGGGTAACTCATTTGC+AGG 0.346933 2_1:+24289902 None:intergenic
CAGGAGGCTTCTTACAAGAT+AGG 0.348900 2_1:-24289211 Msa0202150:CDS
ATGGATGTTGATGAAGAAAA+TGG 0.359964 2_1:+24292750 None:intergenic
GAACATTGCAGATCAATATA+GGG 0.363626 2_1:-24289993 Msa0202150:intron
GACCTCATCACTCGGGCTTA+AGG 0.365085 2_1:+24290577 None:intergenic
TTCTTCATCAACATCCATAA+GGG 0.368786 2_1:-24292745 Msa0202150:CDS
CGGTCATTGAACACAGAATC+AGG 0.368862 2_1:-24289230 Msa0202150:CDS
CAATGTTGCATTTAAGTATC+CGG 0.370250 2_1:-24288454 Msa0202150:three_prime_UTR
GATGTTGGTAGTGATAATTT+TGG 0.373724 2_1:-24288540 Msa0202150:three_prime_UTR
AAACAACCTCAGACAGTTAC+TGG 0.375585 2_1:-24289878 Msa0202150:CDS
ACCTCATCACTCGGGCTTAA+GGG 0.380541 2_1:+24290578 None:intergenic
AGGATTGTTCCTGGCATTGC+AGG 0.381856 2_1:+24292891 None:intergenic
GATATTACAGAAAGGTGTTT+GGG 0.386096 2_1:-24291572 Msa0202150:CDS
TTGTTGAACTTTATAATGTA+AGG 0.387619 2_1:-24288566 Msa0202150:three_prime_UTR
TGATATTACAGAAAGGTGTT+TGG 0.387833 2_1:-24291573 Msa0202150:CDS
AATTAAGGACACCGTGCAAT+TGG 0.388794 2_1:-24289120 Msa0202150:CDS
TCGTCACGAAGGCTAGTAAT+GGG 0.396666 2_1:+24291763 None:intergenic
AGAAAGTAAAGCGAAAATTA+AGG 0.399900 2_1:-24289135 Msa0202150:CDS
TTGGATGGGATGGGGAAGAA+TGG 0.406269 2_1:+24293054 None:intergenic
CCTGAAACCAGGATTGTTCC+TGG 0.408939 2_1:+24292882 None:intergenic
TTTCTTCATCAACATCCATA+AGG 0.416458 2_1:-24292746 Msa0202150:CDS
TTACTTTCTTCAATATGTAC+TGG 0.418098 2_1:+24289149 None:intergenic
GGGATGGGGAAGAATGGATA+TGG 0.423142 2_1:+24293060 None:intergenic
AGTTTCAGGAAACATGCCTT+TGG 0.433052 2_1:-24288937 Msa0202150:CDS
GGTGATGATTCTTGAGAAGA+TGG 0.446255 2_1:+24290408 None:intergenic
TTCTGGAGGACCATTTGATC+AGG 0.446366 2_1:-24288620 Msa0202150:CDS
GTCTGAGGTTGTTTCTCAAA+GGG 0.452760 2_1:+24289887 None:intergenic
CTTGGTAAGAAACTTGCAAC+AGG 0.456620 2_1:-24289174 Msa0202150:CDS
TAGGGTGAAAAGTGCTTCCT+TGG 0.458095 2_1:-24289192 Msa0202150:CDS
GAAAATAGAAAATGTGGATA+AGG 0.459000 2_1:-24288838 Msa0202150:intron
GTTATCATCAGTAGAAGTAC+TGG 0.459966 2_1:+24288654 None:intergenic
GATGGAGCACTTAAAACATC+AGG 0.463793 2_1:+24290426 None:intergenic
TTTAAAATTCAGGATTCTGA+AGG 0.468257 2_1:-24291733 Msa0202150:CDS
TTGTCATTGGATAAACCAAC+AGG 0.468939 2_1:+24290342 None:intergenic
ACATCAGGAGAAAGCCTTTG+AGG 0.470123 2_1:+24290441 None:intergenic
ACCAACAGGACTTTGTAATT+GGG 0.474970 2_1:+24290356 None:intergenic
TTGATGATAACCTGATCAAA+TGG 0.477480 2_1:+24288610 None:intergenic
TAGAAGGACCACACAATAGC+TGG 0.485320 2_1:-24293099 Msa0202150:five_prime_UTR
AGCCCGAGTGATGAGGTCTC+AGG 0.490629 2_1:-24290572 Msa0202150:intron
ACTTGATACTTTATTGGAGG+TGG 0.493719 2_1:+24289305 None:intergenic
CTTACTTGATACTTTATTGG+AGG 0.495401 2_1:+24289302 None:intergenic
GTAAAGCCTGAACGAGAAAC+CGG 0.502027 2_1:+24288435 None:intergenic
TGCAATGCCAGGAACAATCC+TGG 0.506580 2_1:-24292889 Msa0202150:exon
TCTGATACAAAACAAAATAG+AGG 0.507430 2_1:-24289798 Msa0202150:CDS
TCTTCAATATTCCGAGAAGA+AGG 0.510014 2_1:-24289768 Msa0202150:intron
TCGTGTTGAAGATGTTGCTT+TGG 0.511404 2_1:+24290387 None:intergenic
TGAGAGTCAACATTTGGAGC+AGG 0.514270 2_1:-24289255 Msa0202150:CDS
AGCATATAGTAGAGATCAAG+AGG 0.520557 2_1:-24289012 Msa0202150:CDS
ATATTTACTGCTTGTGACAC+AGG 0.523930 2_1:+24289953 None:intergenic
ATTCTGCACCCTGCAATGCC+AGG 0.526840 2_1:-24292900 Msa0202150:exon
AGGAGGCTTCTTACAAGATA+GGG 0.528120 2_1:-24289210 Msa0202150:CDS
GGGAAGACATGTTTCCACTT+GGG 0.528184 2_1:-24291552 Msa0202150:CDS
TGTCTGAGGTTGTTTCTCAA+AGG 0.531001 2_1:+24289886 None:intergenic
TATAATGTAAGGTTAGATGT+TGG 0.533694 2_1:-24288555 Msa0202150:three_prime_UTR
GTCAACATTTGGAGCAGGAT+CGG 0.534338 2_1:-24289250 Msa0202150:CDS
ATCGTCACGAAGGCTAGTAA+TGG 0.537072 2_1:+24291762 None:intergenic
TGGGAAGACATGTTTCCACT+TGG 0.537187 2_1:-24291553 Msa0202150:CDS
GGATTGTTCCTGGCATTGCA+GGG 0.537468 2_1:+24292892 None:intergenic
GGAAGACATGTTTCCACTTG+GGG 0.538369 2_1:-24291551 Msa0202150:CDS
AGCCTTTGAGGAAATGTATG+TGG 0.545335 2_1:+24290453 None:intergenic
TCCCAATTACAAAGTCCTGT+TGG 0.548695 2_1:-24290357 Msa0202150:CDS
ATAATTGAATGCAGCTTCCA+TGG 0.550018 2_1:-24292651 Msa0202150:intron
TTTCCCGAAAATAGAAAATG+TGG 0.551322 2_1:-24288844 Msa0202150:CDS
AAACCTGAGACCTCATCACT+CGG 0.555983 2_1:+24290569 None:intergenic
GAATTCTTACACAGGATATG+AGG 0.555986 2_1:-24289340 Msa0202150:intron
TTAAAATTCAGGATTCTGAA+GGG 0.560085 2_1:-24291732 Msa0202150:CDS
TGAGGTGAGCAAGTATGAAA+AGG 0.564247 2_1:-24288701 Msa0202150:CDS
AAGAAATAAAGATCAAGAAG+AGG 0.565984 2_1:-24289051 Msa0202150:CDS
AAATACTAACCATCTAAGCC+AGG 0.568110 2_1:-24288901 Msa0202150:CDS
TAATTGAATGCAGCTTCCAT+GGG 0.568354 2_1:-24292650 Msa0202150:intron
CAAAACAAAATAGAGGATGA+TGG 0.570291 2_1:-24289791 Msa0202150:CDS
TCCCACATACATTTCCTCAA+AGG 0.572259 2_1:-24290455 Msa0202150:CDS
GGGAATGAAATATCGCGTGC+AGG 0.574929 2_1:-24291712 Msa0202150:intron
GACATGTTTCCACTTGGGGA+AGG 0.575820 2_1:-24291547 Msa0202150:CDS
ATCATTCAATTTGCACGTGG+AGG 0.577439 2_1:-24289932 Msa0202150:CDS
GAGCAAGTATGAAAAGGTGC+AGG 0.579255 2_1:-24288695 Msa0202150:CDS
TCTGAACCAGTAACTGTCTG+AGG 0.579483 2_1:+24289872 None:intergenic
TTAAGGTTGATATTACAGAA+AGG 0.580085 2_1:-24291580 Msa0202150:CDS
TGCAACTGTCCTTCCCCAAG+TGG 0.582677 2_1:+24291538 None:intergenic
GAGCTTCTTAACAGCCAAAG+AGG 0.591164 2_1:-24290644 Msa0202150:CDS
CATACATTCAACTCTAGCAT+AGG 0.595307 2_1:+24292989 None:intergenic
TCTTCATCAACATCCATAAG+GGG 0.601384 2_1:-24292744 Msa0202150:intron
TTTCTATCAGAGAGCTCCAA+AGG 0.602700 2_1:+24288921 None:intergenic
GCGTGACAGAATTCGTATGA+TGG 0.603215 2_1:-24291482 Msa0202150:intron
ATATACTGAAACTGGAACTG+AGG 0.605588 2_1:-24288719 Msa0202150:CDS
GCCTTTGAGGAAATGTATGT+GGG 0.608477 2_1:+24290454 None:intergenic
ACCCTTAAGCCCGAGTGATG+AGG 0.609390 2_1:-24290579 Msa0202150:CDS
AAAATTCAGTACCTGAAACC+AGG 0.621327 2_1:+24292871 None:intergenic
CTGTTGCAAGTTTCTTACCA+AGG 0.628286 2_1:+24289175 None:intergenic
GAGTATGAAATCAATGACAA+AGG 0.637828 2_1:-24292620 Msa0202150:CDS
AACCTGAGACCTCATCACTC+GGG 0.638591 2_1:+24290570 None:intergenic
AACAGAGATGAAAATTCTGG+AGG 0.647018 2_1:-24288634 Msa0202150:CDS
AGGGCTCAACTCCAATTGCA+CGG 0.653427 2_1:+24289109 None:intergenic
CAATGAAACCAGCTATTGTG+TGG 0.663486 2_1:+24293091 None:intergenic
CGTCACGAAGGCTAGTAATG+GGG 0.684087 2_1:+24291764 None:intergenic
AATATCATTCAATTTGCACG+TGG 0.702829 2_1:-24289935 Msa0202150:CDS
AATTGAATGCAGCTTCCATG+GGG 0.719540 2_1:-24292649 Msa0202150:intron
ATGTTGATGAAGAAAATGGA+AGG 0.724602 2_1:+24292754 None:intergenic
TCATTGAACACAGAATCAGG+AGG 0.760114 2_1:-24289227 Msa0202150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAACATTATTTTTGTTT+TGG + chr2_1:24289254-24289273 None:intergenic 10.0%
!!! ATTAAAAGTAATTTTTGATT+TGG - chr2_1:24290899-24290918 Msa0202150:intron 10.0%
!! TATACATTCATTATTTATTT+CGG + chr2_1:24291099-24291118 None:intergenic 10.0%
!!! AATAAGTTTAAAATAGATTA+TGG + chr2_1:24292027-24292046 None:intergenic 10.0%
!! TTTATTAACAAAGATATTAA+TGG + chr2_1:24292825-24292844 None:intergenic 10.0%
!!! TTTTTTAACTTTTGTTTAAG+TGG + chr2_1:24288587-24288606 None:intergenic 15.0%
!! ATAAAGATTGAAACTTAATT+TGG + chr2_1:24288676-24288695 None:intergenic 15.0%
!!! ATTTATGTATATGTATTTTG+TGG + chr2_1:24289323-24289342 None:intergenic 15.0%
!! AAAATACATATACATAAATG+TGG - chr2_1:24289324-24289343 Msa0202150:CDS 15.0%
!! AAATACATATACATAAATGT+GGG - chr2_1:24289325-24289344 Msa0202150:CDS 15.0%
!!! TTTGTTCATTTTTTTGATAA+GGG + chr2_1:24289448-24289467 None:intergenic 15.0%
!!! TTTTGTTCATTTTTTTGATA+AGG + chr2_1:24289449-24289468 None:intergenic 15.0%
!! ATCTTCAAATTATCTATTAA+TGG + chr2_1:24290258-24290277 None:intergenic 15.0%
!! ATAGATAATTTGAAGATTAT+AGG - chr2_1:24290261-24290280 Msa0202150:intron 15.0%
!! CATTTGTTTGTATTTAATTA+TGG + chr2_1:24290556-24290575 None:intergenic 15.0%
!! ATGTTTAATAGTTATGAATT+TGG - chr2_1:24291121-24291140 Msa0202150:intron 15.0%
!!! GTTTTTTTGGTATATTTATA+GGG + chr2_1:24292512-24292531 None:intergenic 15.0%
!!! ATTTTCCAATCAATCTTTTA+TGG - chr2_1:24288457-24288476 Msa0202150:three_prime_UTR 20.0%
!!! ATTGATTTTTATTATAGTGC+TGG - chr2_1:24288812-24288831 Msa0202150:intron 20.0%
!! ATTAAAATTAGAGACTTACA+AGG + chr2_1:24289013-24289032 None:intergenic 20.0%
!! AATACATATACATAAATGTG+GGG - chr2_1:24289326-24289345 Msa0202150:CDS 20.0%
!!! AATGAAAAAAATTTGCCTTT+TGG - chr2_1:24289360-24289379 Msa0202150:intron 20.0%
!!! ATGAAAAAAATTTGCCTTTT+GGG - chr2_1:24289361-24289380 Msa0202150:intron 20.0%
!!! CGATTTGATTTTTAAAATTC+AGG - chr2_1:24289856-24289875 Msa0202150:CDS 20.0%
!! TAACACCATATTTGATAAAA+TGG - chr2_1:24289920-24289939 Msa0202150:CDS 20.0%
!!! TTGAACCATTTTATCAAATA+TGG + chr2_1:24289928-24289947 None:intergenic 20.0%
!! AATACAAACAAATGTATTGT+TGG - chr2_1:24290562-24290581 Msa0202150:intron 20.0%
!! ATACAAACAAATGTATTGTT+GGG - chr2_1:24290563-24290582 Msa0202150:intron 20.0%
!! TTAGAAGTAATCTTGTAAAA+TGG - chr2_1:24290672-24290691 Msa0202150:intron 20.0%
!! TGTTATAATTGTGTTTAACA+CGG + chr2_1:24290699-24290718 None:intergenic 20.0%
!! GTCTAACATTAATTAACTTA+TGG - chr2_1:24290869-24290888 Msa0202150:intron 20.0%
!! ATGTACTATTGTTTGTTTAA+TGG - chr2_1:24291566-24291585 Msa0202150:CDS 20.0%
!!! CGTTTTTTTGGTATATTTAT+AGG + chr2_1:24292513-24292532 None:intergenic 20.0%
!!! TTATCCACATTTTCTATTTT+CGG + chr2_1:24292762-24292781 None:intergenic 20.0%
!! TTGTTGAACTTTATAATGTA+AGG - chr2_1:24293033-24293052 Msa0202150:five_prime_UTR 20.0%
! ATTAGCCATAAAAGATTGAT+TGG + chr2_1:24288465-24288484 None:intergenic 25.0%
!! TAAATGTTTTGCTAGTTAGA+AGG - chr2_1:24288484-24288503 Msa0202150:three_prime_UTR 25.0%
!! GAAAAATGGAAATTTTGGAT+GGG + chr2_1:24288562-24288581 None:intergenic 25.0%
!! TGAAAAATGGAAATTTTGGA+TGG + chr2_1:24288563-24288582 None:intergenic 25.0%
!! TGGTTGAAAAATGGAAATTT+TGG + chr2_1:24288567-24288586 None:intergenic 25.0%
! TTGTTTAAGTGGTTGAAAAA+TGG + chr2_1:24288576-24288595 None:intergenic 25.0%
! TCAAAAAGAAAATCAACATG+TGG + chr2_1:24288783-24288802 None:intergenic 25.0%
! TAAGGAAAAATTTAGAAGCA+AGG + chr2_1:24288892-24288911 None:intergenic 25.0%
!! AAATCGAAGGATTTTACTAA+AGG - chr2_1:24289158-24289177 Msa0202150:CDS 25.0%
! ATACATATACATAAATGTGG+GGG - chr2_1:24289327-24289346 Msa0202150:CDS 25.0%
!! TTTAAAATTCAGGATTCTGA+AGG - chr2_1:24289866-24289885 Msa0202150:CDS 25.0%
! TTAAAATTCAGGATTCTGAA+GGG - chr2_1:24289867-24289886 Msa0202150:CDS 25.0%
!!! TTAAGGTTGATATTACAGAA+AGG - chr2_1:24290019-24290038 Msa0202150:intron 25.0%
! AGTATAATACAAACTTACCA+TGG + chr2_1:24290232-24290251 None:intergenic 25.0%
! GATTATAGGATATCTTGTAT+AGG - chr2_1:24290275-24290294 Msa0202150:intron 25.0%
! GAACATACAATATTTGATCA+CGG + chr2_1:24290800-24290819 None:intergenic 25.0%
! GTAACATAGATACGAAAAAA+CGG + chr2_1:24290831-24290850 None:intergenic 25.0%
!!! TATCTATGTTACTTTTGAAC+CGG - chr2_1:24290839-24290858 Msa0202150:intron 25.0%
! TCTGATACAAAACAAAATAG+AGG - chr2_1:24291801-24291820 Msa0202150:intron 25.0%
! TCAAATAAATCAATCCAAAC+AGG + chr2_1:24291936-24291955 None:intergenic 25.0%
! ATGTATAAGCTATTTGTGTA+AGG + chr2_1:24292110-24292129 None:intergenic 25.0%
!! GAAGAATCTTTCTTTTCATT+TGG + chr2_1:24292324-24292343 None:intergenic 25.0%
! TTACTTTCTTCAATATGTAC+TGG + chr2_1:24292453-24292472 None:intergenic 25.0%
! AGAAAGTAAAGCGAAAATTA+AGG - chr2_1:24292464-24292483 Msa0202150:intron 25.0%
!!! TTTGAATCTGTTCGTTTTTT+TGG + chr2_1:24292525-24292544 None:intergenic 25.0%
! AAGAAATAAAGATCAAGAAG+AGG - chr2_1:24292548-24292567 Msa0202150:intron 25.0%
!! TATCCACATTTTCTATTTTC+GGG + chr2_1:24292761-24292780 None:intergenic 25.0%
! GAAAATAGAAAATGTGGATA+AGG - chr2_1:24292761-24292780 Msa0202150:CDS 25.0%
! GTATAACTATGTGTTGTATA+TGG - chr2_1:24292783-24292802 Msa0202150:intron 25.0%
! TATAATGTAAGGTTAGATGT+TGG - chr2_1:24293044-24293063 Msa0202150:five_prime_UTR 25.0%
! TATTATAGTGCTGGAATTCA+TGG - chr2_1:24288821-24288840 Msa0202150:intron 30.0%
! ATGTTGATGAAGAAAATGGA+AGG + chr2_1:24288848-24288867 None:intergenic 30.0%
! ATGGATGTTGATGAAGAAAA+TGG + chr2_1:24288852-24288871 None:intergenic 30.0%
TTTCTTCATCAACATCCATA+AGG - chr2_1:24288853-24288872 Msa0202150:CDS 30.0%
TTCTTCATCAACATCCATAA+GGG - chr2_1:24288854-24288873 Msa0202150:CDS 30.0%
AGTTGACAATAGGAAGAATA+AGG + chr2_1:24288910-24288929 None:intergenic 30.0%
GAGTATGAAATCAATGACAA+AGG - chr2_1:24288979-24288998 Msa0202150:CDS 30.0%
AAAATCGCAATCAAAATCGA+AGG - chr2_1:24289145-24289164 Msa0202150:CDS 30.0%
! GACTTTTGTAGAATCGATAT+AGG - chr2_1:24289180-24289199 Msa0202150:CDS 30.0%
TAAAATCGCAATCAAAATCG+AGG - chr2_1:24289144-24289163 Msa0202150:CDS 30.0%
TACATATACATAAATGTGGG+GGG - chr2_1:24289328-24289347 Msa0202150:CDS 30.0%
TCGTTCTATAAATACCCAAA+AGG + chr2_1:24289378-24289397 None:intergenic 30.0%
!!! AGGATTTTGATGGATTTTGA+AGG + chr2_1:24289473-24289492 None:intergenic 30.0%
!! ATAGGATTTTGCCTGTTTTT+GGG - chr2_1:24289541-24289560 Msa0202150:intron 30.0%
AGAATTTGGTATGACTTATC+TGG + chr2_1:24289775-24289794 None:intergenic 30.0%
ACAGGTTACAACATAGAATT+TGG + chr2_1:24289789-24289808 None:intergenic 30.0%
AGACAACAAAAAGAACAAAC+AGG + chr2_1:24289807-24289826 None:intergenic 30.0%
TAAAAATCAAATCGTCACGA+AGG + chr2_1:24289850-24289869 None:intergenic 30.0%
AACATGATGCAGTAAATAAC+TGG - chr2_1:24289985-24290004 Msa0202150:CDS 30.0%
!! TGATATTACAGAAAGGTGTT+TGG - chr2_1:24290026-24290045 Msa0202150:intron 30.0%
!! GATATTACAGAAAGGTGTTT+GGG - chr2_1:24290027-24290046 Msa0202150:intron 30.0%
TAGGATTACCGAACTATTAT+TGG - chr2_1:24290294-24290313 Msa0202150:intron 30.0%
AGAGCTAACCAATAATAGTT+CGG + chr2_1:24290305-24290324 None:intergenic 30.0%
!! CTATTATTGGTTAGCTCTAT+AGG - chr2_1:24290307-24290326 Msa0202150:intron 30.0%
AGCTCTATAGGATAATAAGT+AGG - chr2_1:24290319-24290338 Msa0202150:intron 30.0%
AACAAATGTATTGTTGGGTA+TGG - chr2_1:24290568-24290587 Msa0202150:intron 30.0%
TTCATAGATTACCGATATGT+GGG - chr2_1:24290591-24290610 Msa0202150:CDS 30.0%
CTTTCTATTGATCAAGCTTA+GGG + chr2_1:24290728-24290747 None:intergenic 30.0%
! ATTTTCCAATGTCTTCTTGT+TGG + chr2_1:24291548-24291567 None:intergenic 30.0%
AGAACATTGCAGATCAATAT+AGG - chr2_1:24291605-24291624 Msa0202150:intron 30.0%
GAACATTGCAGATCAATATA+GGG - chr2_1:24291606-24291625 Msa0202150:intron 30.0%
AATATCATTCAATTTGCACG+TGG - chr2_1:24291664-24291683 Msa0202150:intron 30.0%
CAAAACAAAATAGAGGATGA+TGG - chr2_1:24291808-24291827 Msa0202150:intron 30.0%
! ATCATTTTCCTAACATTGCT+AGG + chr2_1:24291874-24291893 None:intergenic 30.0%
! GAATTCACTTGTTGAAAAAC+TGG + chr2_1:24292245-24292264 None:intergenic 30.0%
CTTACTTGATACTTTATTGG+AGG + chr2_1:24292300-24292319 None:intergenic 30.0%
GGACTTACTTGATACTTTAT+TGG + chr2_1:24292303-24292322 None:intergenic 30.0%
! TTTGAAACAGTTACAGTTTC+AGG - chr2_1:24292648-24292667 Msa0202150:intron 30.0%
TTTCCCGAAAATAGAAAATG+TGG - chr2_1:24292755-24292774 Msa0202150:CDS 30.0%
AATGTACCATATACTGAAAC+TGG - chr2_1:24292872-24292891 Msa0202150:intron 30.0%
GATAACAGAGATGAAAATTC+TGG - chr2_1:24292962-24292981 Msa0202150:five_prime_UTR 30.0%
! TTGATGATAACCTGATCAAA+TGG + chr2_1:24292992-24293011 None:intergenic 30.0%
!!! GATGTTGGTAGTGATAATTT+TGG - chr2_1:24293059-24293078 Msa0202150:five_prime_UTR 30.0%
CAATGTTGCATTTAAGTATC+CGG - chr2_1:24293145-24293164 Msa0202150:five_prime_UTR 30.0%
! ATGGAAATTTTGGATGGGAT+GGG + chr2_1:24288557-24288576 None:intergenic 35.0%
! AATGGAAATTTTGGATGGGA+TGG + chr2_1:24288558-24288577 None:intergenic 35.0%
CATACATTCAACTCTAGCAT+AGG + chr2_1:24288613-24288632 None:intergenic 35.0%
AAAATTCAGTACCTGAAACC+AGG + chr2_1:24288731-24288750 None:intergenic 35.0%
TCTTCATCAACATCCATAAG+GGG - chr2_1:24288855-24288874 Msa0202150:CDS 35.0%
CCACTTAAGAAGTTGACAAT+AGG + chr2_1:24288920-24288939 None:intergenic 35.0%
CCTATTGTCAACTTCTTAAG+TGG - chr2_1:24288917-24288936 Msa0202150:CDS 35.0%
ATAATTGAATGCAGCTTCCA+TGG - chr2_1:24288948-24288967 Msa0202150:CDS 35.0%
TAATTGAATGCAGCTTCCAT+GGG - chr2_1:24288949-24288968 Msa0202150:CDS 35.0%
!! ATTTTGATAACCTTGAGGTC+CGG + chr2_1:24289078-24289097 None:intergenic 35.0%
GACCTCAAGGTTATCAAAAT+CGG - chr2_1:24289078-24289097 Msa0202150:CDS 35.0%
ACCTCAAGGTTATCAAAATC+GGG - chr2_1:24289079-24289098 Msa0202150:CDS 35.0%
GACTTTACTTCAAGTCGAAA+GGG - chr2_1:24289101-24289120 Msa0202150:CDS 35.0%
TCGATATAGGATAGCAAAGT+CGG - chr2_1:24289193-24289212 Msa0202150:CDS 35.0%
GGTATTTATAGAACGAGTCA+TGG - chr2_1:24289382-24289401 Msa0202150:intron 35.0%
AACGAGTCATGGATTCAAAT+CGG - chr2_1:24289393-24289412 Msa0202150:intron 35.0%
! ATAAGGGTCAATTTTTGACC+CGG + chr2_1:24289432-24289451 None:intergenic 35.0%
! TCAAAATCGCAGGATTTTGA+TGG + chr2_1:24289483-24289502 None:intergenic 35.0%
! CAAAATCCTGCGATTTTGAA+TGG - chr2_1:24289484-24289503 Msa0202150:intron 35.0%
TGAAATCCATTCAAAATCGC+AGG + chr2_1:24289493-24289512 None:intergenic 35.0%
! GATAGGATTTTGCCTGTTTT+TGG - chr2_1:24289540-24289559 Msa0202150:intron 35.0%
TGTAACAAAAGAGCCAATGT+CGG - chr2_1:24289711-24289730 Msa0202150:intron 35.0%
GCTTAAACAACGCAAACTAA+AGG - chr2_1:24290206-24290225 Msa0202150:intron 35.0%
!! TTAGCCCCTCATTTTTCAAT+GGG + chr2_1:24290420-24290439 None:intergenic 35.0%
!! TTTAGCCCCTCATTTTTCAA+TGG + chr2_1:24290421-24290440 None:intergenic 35.0%
ATTGAAAAATGAGGGGCTAA+AGG - chr2_1:24290420-24290439 Msa0202150:CDS 35.0%
TTGAAAAATGAGGGGCTAAA+GGG - chr2_1:24290421-24290440 Msa0202150:CDS 35.0%
GATTTCGTATTTGCACTAGA+AGG + chr2_1:24290483-24290502 None:intergenic 35.0%
GTTCATAGATTACCGATATG+TGG - chr2_1:24290590-24290609 Msa0202150:CDS 35.0%
CCTTTCTATTGATCAAGCTT+AGG + chr2_1:24290729-24290748 None:intergenic 35.0%
CCTAAGCTTGATCAATAGAA+AGG - chr2_1:24290726-24290745 Msa0202150:intron 35.0%
CAATATTTGATCACGGAGTT+CGG + chr2_1:24290793-24290812 None:intergenic 35.0%
ACCAACAGGACTTTGTAATT+GGG + chr2_1:24291246-24291265 None:intergenic 35.0%
AACCAACAGGACTTTGTAAT+TGG + chr2_1:24291247-24291266 None:intergenic 35.0%
TTGTCATTGGATAAACCAAC+AGG + chr2_1:24291260-24291279 None:intergenic 35.0%
CTAAATGTTAGTGTTGTGTC+CGG - chr2_1:24291487-24291506 Msa0202150:CDS 35.0%
TCATACCAACAAGAAGACAT+TGG - chr2_1:24291540-24291559 Msa0202150:CDS 35.0%
ATATTTACTGCTTGTGACAC+AGG + chr2_1:24291649-24291668 None:intergenic 35.0%
TCTTCAATATTCCGAGAAGA+AGG - chr2_1:24291831-24291850 Msa0202150:intron 35.0%
TACTGACATAAGCACAAGTA+AGG - chr2_1:24291963-24291982 Msa0202150:intron 35.0%
TAAGCACAAGTAAGGATGTT+TGG - chr2_1:24291971-24291990 Msa0202150:intron 35.0%
TTCACATAAGCTAGCTATCA+TGG + chr2_1:24292062-24292081 None:intergenic 35.0%
CAACAAGTGAATTCTTACAC+AGG - chr2_1:24292251-24292270 Msa0202150:intron 35.0%
GAATTCTTACACAGGATATG+AGG - chr2_1:24292259-24292278 Msa0202150:intron 35.0%
ACTTGATACTTTATTGGAGG+TGG + chr2_1:24292297-24292316 None:intergenic 35.0%
! TTCTTCTGAGAGTCAACATT+TGG - chr2_1:24292338-24292357 Msa0202150:intron 35.0%
AGCATATAGTAGAGATCAAG+AGG - chr2_1:24292587-24292606 Msa0202150:intron 35.0%
AAATACTAACCATCTAAGCC+AGG - chr2_1:24292698-24292717 Msa0202150:intron 35.0%
! ACATTTTATCCTGGCTTAGA+TGG + chr2_1:24292710-24292729 None:intergenic 35.0%
GGAAATCCAAACTTCTTTGA+TGG + chr2_1:24292740-24292759 None:intergenic 35.0%
TCAGTTCCAGTTTCAGTATA+TGG + chr2_1:24292881-24292900 None:intergenic 35.0%
ATATACTGAAACTGGAACTG+AGG - chr2_1:24292880-24292899 Msa0202150:intron 35.0%
! GTTATCATCAGTAGAAGTAC+TGG + chr2_1:24292948-24292967 None:intergenic 35.0%
AACAGAGATGAAAATTCTGG+AGG - chr2_1:24292965-24292984 Msa0202150:five_prime_UTR 35.0%
CAATGAAACCAGCTATTGTG+TGG + chr2_1:24288511-24288530 None:intergenic 40.0%
! CACACAATAGCTGGTTTCAT+TGG - chr2_1:24288509-24288528 Msa0202150:three_prime_UTR 40.0%
! TGGAAATTTTGGATGGGATG+GGG + chr2_1:24288556-24288575 None:intergenic 40.0%
AATTGAATGCAGCTTCCATG+GGG - chr2_1:24288950-24288969 Msa0202150:CDS 40.0%
! TTCATACTCCATTTTCCCCA+TGG + chr2_1:24288968-24288987 None:intergenic 40.0%
!! AACCTATGTAGCATTGACAC+CGG - chr2_1:24289056-24289075 Msa0202150:CDS 40.0%
!! TCCCGATTTTGATAACCTTG+AGG + chr2_1:24289083-24289102 None:intergenic 40.0%
GGACTTTACTTCAAGTCGAA+AGG - chr2_1:24289100-24289119 Msa0202150:CDS 40.0%
CGATATAGGATAGCAAAGTC+GGG - chr2_1:24289194-24289213 Msa0202150:CDS 40.0%
ACGAGTCATGGATTCAAATC+GGG - chr2_1:24289394-24289413 Msa0202150:intron 40.0%
AATCGGGTCAATTTACGAAC+CGG - chr2_1:24289410-24289429 Msa0202150:intron 40.0%
! CGATTTTGTGCGACTTTGAT+AGG - chr2_1:24289523-24289542 Msa0202150:intron 40.0%
CATAGCAAAGTCCCAAAAAC+AGG + chr2_1:24289555-24289574 None:intergenic 40.0%
!!! CTGTTTTTGGGACTTTGCTA+TGG - chr2_1:24289553-24289572 Msa0202150:intron 40.0%
! AGTCGCAAAAACCAGGATTT+TGG - chr2_1:24289600-24289619 Msa0202150:intron 40.0%
! GTCGCAAAAACCAGGATTTT+GGG - chr2_1:24289601-24289620 Msa0202150:intron 40.0%
!! CGCGTTTTTGATAACAATGC+CGG - chr2_1:24289632-24289651 Msa0202150:intron 40.0%
AACATTTACGTGTCAGTGTC+AGG + chr2_1:24289659-24289678 None:intergenic 40.0%
TGACACTGACACGTAAATGT+TGG - chr2_1:24289658-24289677 Msa0202150:intron 40.0%
GTCTTACATCTATCCGACAT+TGG + chr2_1:24289727-24289746 None:intergenic 40.0%
TGATGCAGTAAATAACTGGC+AGG - chr2_1:24289989-24290008 Msa0202150:intron 40.0%
! AACTGGCAGGAGTACATTTA+AGG - chr2_1:24290002-24290021 Msa0202150:intron 40.0%
CCAACAATACCTCAGAAAAG+CGG + chr2_1:24290380-24290399 None:intergenic 40.0%
TGAGCCCCATTGAAAAATGA+GGG - chr2_1:24290412-24290431 Msa0202150:CDS 40.0%
!! TAGCCCCTCATTTTTCAATG+GGG + chr2_1:24290419-24290438 None:intergenic 40.0%
CGTATTTGCACTAGAAGGAA+AGG + chr2_1:24290478-24290497 None:intergenic 40.0%
!! TACTTCTAAAGCATACCGCA+GGG + chr2_1:24290661-24290680 None:intergenic 40.0%
!! TTACTTCTAAAGCATACCGC+AGG + chr2_1:24290662-24290681 None:intergenic 40.0%
AAACTGCTCTACAGTTAGAG+AGG - chr2_1:24290754-24290773 Msa0202150:intron 40.0%
TTAATGTTAGACCAGCAAGC+CGG + chr2_1:24290861-24290880 None:intergenic 40.0%
TCCCACATACATTTCCTCAA+AGG - chr2_1:24291144-24291163 Msa0202150:intron 40.0%
! GCCTTTGAGGAAATGTATGT+GGG + chr2_1:24291148-24291167 None:intergenic 40.0%
! AGCCTTTGAGGAAATGTATG+TGG + chr2_1:24291149-24291168 None:intergenic 40.0%
! GATGGAGCACTTAAAACATC+AGG + chr2_1:24291176-24291195 None:intergenic 40.0%
GGTGATGATTCTTGAGAAGA+TGG + chr2_1:24291194-24291213 None:intergenic 40.0%
! TCGTGTTGAAGATGTTGCTT+TGG + chr2_1:24291215-24291234 None:intergenic 40.0%
TCCCAATTACAAAGTCCTGT+TGG - chr2_1:24291242-24291261 Msa0202150:intron 40.0%
CGTGGAACTTTCTTTGTCAT+TGG + chr2_1:24291273-24291292 None:intergenic 40.0%
CTCAACAACAACATTTGTCG+TGG + chr2_1:24291291-24291310 None:intergenic 40.0%
GATTGATGTTCGTGTCATGT+CGG + chr2_1:24291437-24291456 None:intergenic 40.0%
CACTAACATTTAGGCATCAG+TGG + chr2_1:24291480-24291499 None:intergenic 40.0%
CGGACACAACACTAACATTT+AGG + chr2_1:24291489-24291508 None:intergenic 40.0%
TGTCTGTGTTTGTGCTTCAT+AGG - chr2_1:24291510-24291529 Msa0202150:CDS 40.0%
!!! TGACACAGGTTTTGTTGATG+AGG + chr2_1:24291635-24291654 None:intergenic 40.0%
ATCATTCAATTTGCACGTGG+AGG - chr2_1:24291667-24291686 Msa0202150:intron 40.0%
TCAAAGGGTAACTCATTTGC+AGG + chr2_1:24291700-24291719 None:intergenic 40.0%
!! GTCTGAGGTTGTTTCTCAAA+GGG + chr2_1:24291715-24291734 None:intergenic 40.0%
!! TGTCTGAGGTTGTTTCTCAA+AGG + chr2_1:24291716-24291735 None:intergenic 40.0%
AAACAACCTCAGACAGTTAC+TGG - chr2_1:24291721-24291740 Msa0202150:CDS 40.0%
!!! TTTTGAAAGTGTTCCCCCTA+AGG - chr2_1:24291900-24291919 Msa0202150:intron 40.0%
ACAGGCCTAACTATACCTTA+GGG + chr2_1:24291918-24291937 None:intergenic 40.0%
AACAGGCCTAACTATACCTT+AGG + chr2_1:24291919-24291938 None:intergenic 40.0%
AAGGTATAGTTAGGCCTGTT+TGG - chr2_1:24291919-24291938 Msa0202150:intron 40.0%
TAGCTATCATGGAGAGCTTA+TGG + chr2_1:24292051-24292070 None:intergenic 40.0%
! CACAACACTTGAGCATTGTT+TGG + chr2_1:24292186-24292205 None:intergenic 40.0%
TCATTGAACACAGAATCAGG+AGG - chr2_1:24292372-24292391 Msa0202150:intron 40.0%
AGGAGGCTTCTTACAAGATA+GGG - chr2_1:24292389-24292408 Msa0202150:intron 40.0%
CTGTTGCAAGTTTCTTACCA+AGG + chr2_1:24292427-24292446 None:intergenic 40.0%
CTTGGTAAGAAACTTGCAAC+AGG - chr2_1:24292425-24292444 Msa0202150:intron 40.0%
AATTAAGGACACCGTGCAAT+TGG - chr2_1:24292479-24292498 Msa0202150:intron 40.0%
AGTTTCAGGAAACATGCCTT+TGG - chr2_1:24292662-24292681 Msa0202150:intron 40.0%
TTTCTATCAGAGAGCTCCAA+AGG + chr2_1:24292681-24292700 None:intergenic 40.0%
! GGCTTGAGTACATTTTATCC+TGG + chr2_1:24292719-24292738 None:intergenic 40.0%
CTCAAGCCATCAAAGAAGTT+TGG - chr2_1:24292731-24292750 Msa0202150:intron 40.0%
TGAGGTGAGCAAGTATGAAA+AGG - chr2_1:24292898-24292917 Msa0202150:exon 40.0%
TAGAAGGACCACACAATAGC+TGG - chr2_1:24288500-24288519 Msa0202150:three_prime_UTR 45.0%
GGACAATAGCATACCCCTTA+TGG + chr2_1:24288871-24288890 None:intergenic 45.0%
ATCGGGTCAATTTACGAACC+GGG - chr2_1:24289411-24289430 Msa0202150:intron 45.0%
TACGCAAAGTCGCAAAAACC+AGG - chr2_1:24289593-24289612 Msa0202150:intron 45.0%
CGACTTAAGTCCCAAAATCC+TGG + chr2_1:24289614-24289633 None:intergenic 45.0%
TCGTCACGAAGGCTAGTAAT+GGG + chr2_1:24289839-24289858 None:intergenic 45.0%
ATCGTCACGAAGGCTAGTAA+TGG + chr2_1:24289840-24289859 None:intergenic 45.0%
TGGGAAGACATGTTTCCACT+TGG - chr2_1:24290046-24290065 Msa0202150:intron 45.0%
GGGAAGACATGTTTCCACTT+GGG - chr2_1:24290047-24290066 Msa0202150:intron 45.0%
GGAAGACATGTTTCCACTTG+GGG - chr2_1:24290048-24290067 Msa0202150:intron 45.0%
GCGTGACAGAATTCGTATGA+TGG - chr2_1:24290117-24290136 Msa0202150:intron 45.0%
ACAACGCAAACTAAAGGCCA+TGG - chr2_1:24290212-24290231 Msa0202150:intron 45.0%
!!! CCGCTTTTCTGAGGTATTGT+TGG - chr2_1:24290377-24290396 Msa0202150:CDS 45.0%
GTGAGCCCCATTGAAAAATG+AGG - chr2_1:24290411-24290430 Msa0202150:CDS 45.0%
GAGCCCCATTGAAAAATGAG+GGG - chr2_1:24290413-24290432 Msa0202150:CDS 45.0%
TCAACTCTCGTGTATGGCTT+AGG - chr2_1:24290448-24290467 Msa0202150:CDS 45.0%
TGCTCTACAGTTAGAGAGGT+AGG - chr2_1:24290758-24290777 Msa0202150:intron 45.0%
GTTAGAGAGGTAGGCAGAAT+TGG - chr2_1:24290767-24290786 Msa0202150:intron 45.0%
!!! TTACTTTTGAACCGGCTTGC+TGG - chr2_1:24290847-24290866 Msa0202150:intron 45.0%
GAGCTTCTTAACAGCCAAAG+AGG - chr2_1:24290955-24290974 Msa0202150:intron 45.0%
!! TGTCACTTTCTGCACCTCTT+TGG + chr2_1:24290972-24290991 None:intergenic 45.0%
AAACCTGAGACCTCATCACT+CGG + chr2_1:24291033-24291052 None:intergenic 45.0%
ACATCAGGAGAAAGCCTTTG+AGG + chr2_1:24291161-24291180 None:intergenic 45.0%
TTTATGTAGCCCTGACGCAT+CGG - chr2_1:24291372-24291391 Msa0202150:intron 45.0%
! TCGGATTAAAGGCATGTGTC+TGG - chr2_1:24291391-24291410 Msa0202150:intron 45.0%
TGAAGCACAAACACAGACAC+CGG + chr2_1:24291509-24291528 None:intergenic 45.0%
TCTGAACCAGTAACTGTCTG+AGG + chr2_1:24291730-24291749 None:intergenic 45.0%
GGAGAACTCCTAGCAATGTT+AGG - chr2_1:24291863-24291882 Msa0202150:intron 45.0%
GTTCCCCCTAAGGTATAGTT+AGG - chr2_1:24291910-24291929 Msa0202150:intron 45.0%
AGGCCTAACTATACCTTAGG+GGG + chr2_1:24291916-24291935 None:intergenic 45.0%
CAGGCCTAACTATACCTTAG+GGG + chr2_1:24291917-24291936 None:intergenic 45.0%
! AGGATGTTTGGAACAGCTCA+TGG - chr2_1:24291983-24292002 Msa0202150:intron 45.0%
! TGAGAGTCAACATTTGGAGC+AGG - chr2_1:24292344-24292363 Msa0202150:intron 45.0%
! GTCAACATTTGGAGCAGGAT+CGG - chr2_1:24292349-24292368 Msa0202150:intron 45.0%
CGGTCATTGAACACAGAATC+AGG - chr2_1:24292369-24292388 Msa0202150:intron 45.0%
CAGGAGGCTTCTTACAAGAT+AGG - chr2_1:24292388-24292407 Msa0202150:intron 45.0%
!! TAGGGTGAAAAGTGCTTCCT+TGG - chr2_1:24292407-24292426 Msa0202150:intron 45.0%
! GAGCAAGTATGAAAAGGTGC+AGG - chr2_1:24292904-24292923 Msa0202150:exon 45.0%
! TTCTGGAGGACCATTTGATC+AGG - chr2_1:24292979-24292998 Msa0202150:five_prime_UTR 45.0%
GGGATGGGGAAGAATGGATA+TGG + chr2_1:24288542-24288561 None:intergenic 50.0%
TTGGATGGGATGGGGAAGAA+TGG + chr2_1:24288548-24288567 None:intergenic 50.0%
GGATTGTTCCTGGCATTGCA+GGG + chr2_1:24288710-24288729 None:intergenic 50.0%
AGGATTGTTCCTGGCATTGC+AGG + chr2_1:24288711-24288730 None:intergenic 50.0%
TGCAATGCCAGGAACAATCC+TGG - chr2_1:24288710-24288729 Msa0202150:CDS 50.0%
CCTGAAACCAGGATTGTTCC+TGG + chr2_1:24288720-24288739 None:intergenic 50.0%
CCAGGAACAATCCTGGTTTC+AGG - chr2_1:24288717-24288736 Msa0202150:CDS 50.0%
TGCAGCTTCCATGGGGAAAA+TGG - chr2_1:24288957-24288976 Msa0202150:CDS 50.0%
! GTCCGGTGTCAATGCTACAT+AGG + chr2_1:24289061-24289080 None:intergenic 50.0%
TTACGTGTCAGTGTCAGGTC+CGG + chr2_1:24289654-24289673 None:intergenic 50.0%
CGTCACGAAGGCTAGTAATG+GGG + chr2_1:24289838-24289857 None:intergenic 50.0%
GGGAATGAAATATCGCGTGC+AGG - chr2_1:24289887-24289906 Msa0202150:CDS 50.0%
GACATGTTTCCACTTGGGGA+AGG - chr2_1:24290052-24290071 Msa0202150:intron 50.0%
CGGTGCAACGTACTTGAGAT+TGG + chr2_1:24290360-24290379 None:intergenic 50.0%
!! TACGTTGCACCGCTTTTCTG+AGG - chr2_1:24290368-24290387 Msa0202150:CDS 50.0%
GGCTTGTCAACTCTCGTGTA+TGG - chr2_1:24290442-24290461 Msa0202150:CDS 50.0%
TGCTCGAGTGGAACTATGAC+TGG - chr2_1:24290619-24290638 Msa0202150:CDS 50.0%
GCTCGAGTGGAACTATGACT+GGG - chr2_1:24290620-24290639 Msa0202150:CDS 50.0%
CTCGAGTGGAACTATGACTG+GGG - chr2_1:24290621-24290640 Msa0202150:CDS 50.0%
AGTGGAACTATGACTGGGGT+GGG - chr2_1:24290625-24290644 Msa0202150:CDS 50.0%
ACCTCATCACTCGGGCTTAA+GGG + chr2_1:24291024-24291043 None:intergenic 50.0%
AACCTGAGACCTCATCACTC+GGG + chr2_1:24291032-24291051 None:intergenic 50.0%
GCCTTTAATCCGATGCGTCA+GGG + chr2_1:24291384-24291403 None:intergenic 50.0%
TGCCTTTAATCCGATGCGTC+AGG + chr2_1:24291385-24291404 None:intergenic 50.0%
TCCGAGAAGAAGGTTCAACC+AGG - chr2_1:24291841-24291860 Msa0202150:intron 50.0%
CCCTGGTTGAACCTTCTTCT+CGG + chr2_1:24291845-24291864 None:intergenic 50.0%
CCGAGAAGAAGGTTCAACCA+GGG - chr2_1:24291842-24291861 Msa0202150:intron 50.0%
ACATTGCTAGGAGTTCTCCC+TGG + chr2_1:24291862-24291881 None:intergenic 50.0%
AGGGCTCAACTCCAATTGCA+CGG + chr2_1:24292493-24292512 None:intergenic 50.0%
ATTCTGCACCCTGCAATGCC+AGG - chr2_1:24288699-24288718 Msa0202150:CDS 55.0%
!! AGCATTGACACCGGACCTCA+AGG - chr2_1:24289065-24289084 Msa0202150:CDS 55.0%
TGCAACTGTCCTTCCCCAAG+TGG + chr2_1:24290064-24290083 None:intergenic 55.0%
CGAGCAAGCTGCCCACATAT+CGG + chr2_1:24290605-24290624 None:intergenic 55.0%
GAGTGGAACTATGACTGGGG+TGG - chr2_1:24290624-24290643 Msa0202150:CDS 55.0%
GTGGAACTATGACTGGGGTG+GGG - chr2_1:24290626-24290645 Msa0202150:CDS 55.0%
TGGAACTATGACTGGGGTGG+GGG - chr2_1:24290627-24290646 Msa0202150:CDS 55.0%
ACCCTTAAGCCCGAGTGATG+AGG - chr2_1:24291020-24291039 Msa0202150:intron 55.0%
GACCTCATCACTCGGGCTTA+AGG + chr2_1:24291025-24291044 None:intergenic 55.0%
GCCCTGACGCATCGGATTAA+AGG - chr2_1:24291380-24291399 Msa0202150:intron 55.0%
! ATGTGGGCAGCTTGCTCGAG+TGG - chr2_1:24290607-24290626 Msa0202150:CDS 60.0%
GGAACTATGACTGGGGTGGG+GGG - chr2_1:24290628-24290647 Msa0202150:CDS 60.0%
GAACTATGACTGGGGTGGGG+GGG - chr2_1:24290629-24290648 Msa0202150:CDS 60.0%
AGCCCGAGTGATGAGGTCTC+AGG - chr2_1:24291027-24291046 Msa0202150:intron 60.0%
GTGGGGGGGAAAAGTCCCTG+CGG - chr2_1:24290643-24290662 Msa0202150:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 24288447 24293174 24288447 ID=Msa0202150;Name=Msa0202150
chr2_1 mRNA 24288447 24293174 24288447 ID=Msa0202150-mRNA-1;Parent=Msa0202150;Name=Msa0202150-mRNA-1;_AED=0.24;_eAED=0.24;_QI=267|0.66|0.7|1|1|1|10|156|492
chr2_1 exon 24288447 24288749 24288447 ID=Msa0202150-mRNA-1:exon:9346;Parent=Msa0202150-mRNA-1
chr2_1 exon 24288839 24289348 24288839 ID=Msa0202150-mRNA-1:exon:9345;Parent=Msa0202150-mRNA-1
chr2_1 exon 24289769 24290004 24289769 ID=Msa0202150-mRNA-1:exon:9344;Parent=Msa0202150-mRNA-1
chr2_1 exon 24290337 24290489 24290337 ID=Msa0202150-mRNA-1:exon:9343;Parent=Msa0202150-mRNA-1
chr2_1 exon 24290573 24290678 24290573 ID=Msa0202150-mRNA-1:exon:9342;Parent=Msa0202150-mRNA-1
chr2_1 exon 24291483 24291610 24291483 ID=Msa0202150-mRNA-1:exon:9341;Parent=Msa0202150-mRNA-1
chr2_1 exon 24291713 24291786 24291713 ID=Msa0202150-mRNA-1:exon:9340;Parent=Msa0202150-mRNA-1
chr2_1 exon 24292608 24292659 24292608 ID=Msa0202150-mRNA-1:exon:9339;Parent=Msa0202150-mRNA-1
chr2_1 exon 24292745 24292792 24292745 ID=Msa0202150-mRNA-1:exon:9338;Parent=Msa0202150-mRNA-1
chr2_1 exon 24292883 24293174 24292883 ID=Msa0202150-mRNA-1:exon:9337;Parent=Msa0202150-mRNA-1
chr2_1 five_prime_UTR 24292908 24293174 24292908 ID=Msa0202150-mRNA-1:five_prime_utr;Parent=Msa0202150-mRNA-1
chr2_1 CDS 24292883 24292907 24292883 ID=Msa0202150-mRNA-1:cds;Parent=Msa0202150-mRNA-1
chr2_1 CDS 24292745 24292792 24292745 ID=Msa0202150-mRNA-1:cds;Parent=Msa0202150-mRNA-1
chr2_1 CDS 24292608 24292659 24292608 ID=Msa0202150-mRNA-1:cds;Parent=Msa0202150-mRNA-1
chr2_1 CDS 24291713 24291786 24291713 ID=Msa0202150-mRNA-1:cds;Parent=Msa0202150-mRNA-1
chr2_1 CDS 24291483 24291610 24291483 ID=Msa0202150-mRNA-1:cds;Parent=Msa0202150-mRNA-1
chr2_1 CDS 24290573 24290678 24290573 ID=Msa0202150-mRNA-1:cds;Parent=Msa0202150-mRNA-1
chr2_1 CDS 24290337 24290489 24290337 ID=Msa0202150-mRNA-1:cds;Parent=Msa0202150-mRNA-1
chr2_1 CDS 24289769 24290004 24289769 ID=Msa0202150-mRNA-1:cds;Parent=Msa0202150-mRNA-1
chr2_1 CDS 24288839 24289348 24288839 ID=Msa0202150-mRNA-1:cds;Parent=Msa0202150-mRNA-1
chr2_1 CDS 24288603 24288749 24288603 ID=Msa0202150-mRNA-1:cds;Parent=Msa0202150-mRNA-1
chr2_1 three_prime_UTR 24288447 24288602 24288447 ID=Msa0202150-mRNA-1:three_prime_utr;Parent=Msa0202150-mRNA-1
Gene Sequence

>Msa0202150

ATGCCAGGAACAATCCTGGTTTCAGTGCTGGAATTCATGGACCTTCCATTTTCTTCATCAACATCCATAAGGGCTTCCATGGGGAAAATGGAGTATGAAATCAATGACAAAGGAAACTTTTCCTTCCCCATTACTAGCCTTCGTGACGATTTGATTTTTAAAATTCAGGATTCTGAAGGGAATGAAATATCGCGTGCAGGAGTACATTTAAGGTTGATATTACAGAAAGGTGTTTGGGAAGACATGTTTCCACTTGGGGAAGGACAGTTGCATTTGAAGCTGCAAGTCATACTTAGCGATGAAGAGCGTGACAGAATTCGTATGATGAAAAAACAAGATGAGCTTCTTAACAGCCAAAGAGGTGCAGAAAGTGACAGACGCATGATTATCAGCAATGCAGCATTACCCTTAAGCCCGAGTGATGAGGTCTCAGTTATGAATTTGGTCCCACATACATTTCCTCAAAGGCTTTCTCCTGATGTTTTAAGTGCTCCATCTTCTCAAGAATCATCACCAAAGCAACATCTTCAACACGAAGCAGTTTCCCAATTACAAAGTCCTGTTGGTTTATCCAATGACAAAGAAAATCAATATAGGGAGACCTCATCAACAAAACCTGTGTCACAAGCAGTAAATATCATTCAATTTGCACGTGGAGGTAAGAAGCCTGCAAATGAGTTACCCTTTGAGAAACAACCTCAGACAGTTACTGGTTCAGAAGAAAAGATGAATTCTTTAAGATCAGAAAAAACTATTGTTGTTACAAATAATCTGATACAAAACAAAATAGAGGATGATGGTCTTCAATATTCCGAGAAGAAGGATATGAGGTCTCATATTAAACCACCTCCAATAAAGTATCAAGTAAGTCCAAATGAAAAGAAAGATTCTTCTGAGAGTCAACATTTGGAGCAGGATCGGTCATTGAACACAGAATCAGGAGGCTTCTTACAAGATAGGGTGAAAAGTGCTTCCTTGGTAAGAAACTTGCAACAGGTTCCAGTACATATTGAAGAAAGTAAAGCGAAAATTAAGGACACCGTGCAATTGGAGTTGAGCCCTATAAATATACCAAAAAAACGAACAGATTCAAATGCAAGAAATAAAGATCAAGAAGAGGAGTCAAATAGCAAAGTAGCATATAGTAGAGATCAAGAGGAAGAGAGAAATCACAGAAATTTGATGAGAACATCTACATTTGAAACAGTTACAGTTTCAGGAAACATGCCTTTGGAGCTCTCTGATAGAAATACTAACCATCTAAGCCAGGATAAAATGTACTCAAGCCATCAAAGAAGTTTGGATTTCCCGAAAATAGAAAATGTGGATAAGAATGTACCATATACTGAAACTGGAACTGAGGTGAGCAAGTATGAAAAGGTGCAGGACATTGAAGAATCAAAAACCAGTACTTCTACTGATGATAACAGAGATGAAAATTCTGGAGGACCATTTGATCAGGTTATCATCAACTTTTAA

Protein sequence

>Msa0202150

MPGTILVSVLEFMDLPFSSSTSIRASMGKMEYEINDKGNFSFPITSLRDDLIFKIQDSEGNEISRAGVHLRLILQKGVWEDMFPLGEGQLHLKLQVILSDEERDRIRMMKKQDELLNSQRGAESDRRMIISNAALPLSPSDEVSVMNLVPHTFPQRLSPDVLSAPSSQESSPKQHLQHEAVSQLQSPVGLSNDKENQYRETSSTKPVSQAVNIIQFARGGKKPANELPFEKQPQTVTGSEEKMNSLRSEKTIVVTNNLIQNKIEDDGLQYSEKKDMRSHIKPPPIKYQVSPNEKKDSSESQHLEQDRSLNTESGGFLQDRVKSASLVRNLQQVPVHIEESKAKIKDTVQLELSPINIPKKRTDSNARNKDQEEESNSKVAYSRDQEEERNHRNLMRTSTFETVTVSGNMPLELSDRNTNHLSQDKMYSSHQRSLDFPKIENVDKNVPYTETGTEVSKYEKVQDIEESKTSTSTDDNRDENSGGPFDQVIINF*