AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0043670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0043670 MtrunA17_Chr1g0209811 95.092 163 5 1 1 163 1 160 3.03e-106 300
Msa0043670 MtrunA17_Chr6g0457561 46.584 161 66 6 4 163 27 168 8.29e-35 119
Msa0043670 MtrunA17_Chr8g0391011 46.012 163 67 8 7 163 13 160 5.04e-29 104
Msa0043670 MtrunA17_Chr6g0484481 45.122 164 68 7 5 163 21 167 1.28e-25 96.3
Msa0043670 MtrunA17_Chr1g0171841 38.931 131 60 4 26 149 31 148 4.39e-13 63.2
Msa0043670 MtrunA17_Chr4g0045631 38.732 142 58 5 9 149 22 135 1.47e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0043670 AT1G68490.1 59.756 164 53 6 4 163 29 183 4.03e-49 157
Msa0043670 AT1G13390.1 52.469 162 65 5 4 163 25 176 4.89e-42 138
Msa0043670 AT1G13390.2 52.469 162 65 5 4 163 25 176 4.89e-42 138
Msa0043670 AT5G16110.1 50.909 165 67 7 4 163 89 244 1.94e-35 124
Msa0043670 AT3G02555.2 46.296 162 56 5 5 163 29 162 2.16e-27 100
Msa0043670 AT3G02555.1 46.296 162 56 5 5 163 29 162 2.16e-27 100

Find 108 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCGGATTGTTACCAAAAT+TGG 0.118190 1_1:+75028101 None:intergenic
TTGCAGATTGAGGGTTAATT+TGG 0.190437 1_1:-75027756 Msa0043670:three_prime_UTR
GGATGTGTTCGGGCCAATTT+TGG 0.234336 1_1:-75028114 Msa0043670:CDS
AGCTACGGGATAAGGAATTT+TGG 0.240607 1_1:-75027929 Msa0043670:three_prime_UTR
AGACACTAGTACAAGAAATA+AGG 0.256941 1_1:+75027722 None:intergenic
TGTAAGTAGAAGAGTCATTA+GGG 0.322886 1_1:-75027672 Msa0043670:three_prime_UTR
TTGTAACTACCGGCTTAAAA+AGG 0.335635 1_1:-75027599 Msa0043670:three_prime_UTR
AGTCCGACACGGCGGGGCTT+AGG 0.339729 1_1:+75028829 None:intergenic
AGTAGCTAACCCACTAATTC+AGG 0.341828 1_1:-75028247 Msa0043670:CDS
GTCAATAGTGTCTCTTGTTT+AGG 0.345549 1_1:-75027811 Msa0043670:three_prime_UTR
TTGTAAGTAGAAGAGTCATT+AGG 0.348876 1_1:-75027673 Msa0043670:three_prime_UTR
CTTATCCCGTAGCTCTTATA+TGG 0.352258 1_1:+75027938 None:intergenic
TAATTCAGGATGCTCGATTC+GGG 0.363565 1_1:-75028233 Msa0043670:CDS
CCTCCCTTCCTTGCAGAAGA+TGG 0.393816 1_1:+75028135 None:intergenic
CTAATTCAGGATGCTCGATT+CGG 0.401608 1_1:-75028234 Msa0043670:CDS
CATATAAGAGCTACGGGATA+AGG 0.402512 1_1:-75027937 Msa0043670:three_prime_UTR
AGAAGGTGGCAGACCGGATG+GGG 0.404001 1_1:+75028161 None:intergenic
GTGACTAAATAATGCGGTTA+AGG 0.406349 1_1:-75027779 Msa0043670:three_prime_UTR
GAGCAGGGATGCTGCAATTA+CGG 0.410027 1_1:+75028040 None:intergenic
CGCCCCTCTCACCGTCGTCA+TGG 0.419708 1_1:-75028197 Msa0043670:CDS
GTCCGACACGGCGGGGCTTA+GGG 0.420772 1_1:+75028830 None:intergenic
TGCAGATTGAGGGTTAATTT+GGG 0.421481 1_1:-75027755 Msa0043670:three_prime_UTR
CAAGGAAGGGAGGATGTGTT+CGG 0.421741 1_1:-75028125 Msa0043670:CDS
GATCCTTCCGGTGGCATCTC+AGG 0.425952 1_1:-75028774 Msa0043670:intron
GACACTAGTACAAGAAATAA+GGG 0.430863 1_1:+75027723 None:intergenic
CTCCCTTCCTTGCAGAAGAT+GGG 0.432493 1_1:+75028136 None:intergenic
TAGTTACAATTACAATTCAT+AGG 0.433568 1_1:+75027613 None:intergenic
GGTGGAACTGCAAGCAAGCT+TGG 0.435280 1_1:+75029585 None:intergenic
AAGGATTCGATTGCCTTGAC+AGG 0.436802 1_1:-75028068 Msa0043670:CDS
CGGTTAAGGTTGCAGATTGA+GGG 0.439951 1_1:-75027765 Msa0043670:three_prime_UTR
TAATTGCAGCATCCCTGCTC+TGG 0.448656 1_1:-75028037 Msa0043670:CDS
GCCCCTCTCACCGTCGTCAT+GGG 0.457309 1_1:-75028196 Msa0043670:CDS
GGAGAAGGTGGCAGACCGGA+TGG 0.458776 1_1:+75028159 None:intergenic
GTGGAACTGCAAGCAAGCTT+GGG 0.463428 1_1:+75029586 None:intergenic
CTCATCTGCGTCAAATCCCT+TGG 0.463633 1_1:-75028625 Msa0043670:CDS
GGTGGCAGACCGGATGGGGC+AGG 0.466438 1_1:+75028165 None:intergenic
TGCCCTAAGCCCCGCCGTGT+CGG 0.473384 1_1:-75028832 Msa0043670:CDS
CTGTTGTTCTAAGCCAGAGC+AGG 0.481278 1_1:+75028024 None:intergenic
TAGAAGAAATGAAGAGGTGC+AGG 0.484324 1_1:+75029564 None:intergenic
GAGAAGGTGGCAGACCGGAT+GGG 0.484866 1_1:+75028160 None:intergenic
ATTGAAAGAAGAAAGTAAAG+AGG 0.489519 1_1:+75029527 None:intergenic
ACTACCCGAGCAGATCCTTC+CGG 0.494170 1_1:-75028786 Msa0043670:CDS
GTGGTGGTTCCTGCCCCATC+CGG 0.495940 1_1:-75028174 Msa0043670:CDS
TTGAATCACACGGTTCAACT+TGG 0.496164 1_1:+75028649 None:intergenic
GTTGAGGAGTCCGACACGGC+GGG 0.496709 1_1:+75028822 None:intergenic
GTAGAAGAGTCATTAGGGGA+TGG 0.509141 1_1:-75027667 Msa0043670:three_prime_UTR
GCGGTTAAGGTTGCAGATTG+AGG 0.511423 1_1:-75027766 Msa0043670:three_prime_UTR
CTCACCGTCGTCATGGGTGG+TGG 0.513742 1_1:-75028190 Msa0043670:CDS
TCTGCTCGGGTAGTCGTTGA+CGG 0.526759 1_1:+75028795 None:intergenic
TGAATTGTAATTGTAACTAC+CGG 0.527904 1_1:-75027609 Msa0043670:three_prime_UTR
AATAGAATGGGTTAATATCG+TGG 0.530353 1_1:-75029766 None:intergenic
GAATTTACTGTACAAAGCTA+TGG 0.531959 1_1:+75029482 None:intergenic
CCACCCATGACGACGGTGAG+AGG 0.533000 1_1:+75028193 None:intergenic
CAAAGTTACAAACAAGAGGA+TGG 0.534199 1_1:+75027693 None:intergenic
AATCCGGCGGTGAGAGTCGA+AGG 0.545936 1_1:-75028087 Msa0043670:CDS
TCCCTTCCTTGCAGAAGATG+GGG 0.546203 1_1:+75028137 None:intergenic
AATCGAGCATCCTGAATTAG+TGG 0.550154 1_1:+75028237 None:intergenic
CAACCACCATATAAGAGCTA+CGG 0.552833 1_1:-75027944 Msa0043670:three_prime_UTR
AGTCGTTGACGGCGAAGTTG+AGG 0.554697 1_1:+75028806 None:intergenic
AACCACCATATAAGAGCTAC+GGG 0.555576 1_1:-75027943 Msa0043670:three_prime_UTR
TAATGTATGGTTAATTCATG+CGG 0.557043 1_1:+75029705 None:intergenic
CACCCATGACGACGGTGAGA+GGG 0.562391 1_1:+75028194 None:intergenic
TTGGATGTCCTAGTTTGAAG+AGG 0.567788 1_1:-75027910 Msa0043670:three_prime_UTR
AAGGAAGGGAGGATGTGTTC+GGG 0.568345 1_1:-75028124 Msa0043670:CDS
AGAAAAGAAAATTTCGACGA+AGG 0.572219 1_1:-75028882 Msa0043670:five_prime_UTR
GCCACCGGAAGGATCTGCTC+GGG 0.575084 1_1:+75028782 None:intergenic
TTGGTGAGAATTGTGTCCAA+GGG 0.586012 1_1:+75028609 None:intergenic
CTTACAAAGTTACAAACAAG+AGG 0.586457 1_1:+75027689 None:intergenic
CCTCTCACCGTCGTCATGGG+TGG 0.588491 1_1:-75028193 Msa0043670:CDS
ATCCCGTAGCTCTTATATGG+TGG 0.589075 1_1:+75027941 None:intergenic
CTTGGTGAGAATTGTGTCCA+AGG 0.590478 1_1:+75028608 None:intergenic
GCAGGATGATGATTGTGATA+CGG 0.592153 1_1:-75028334 Msa0043670:intron
AATGTATGGTTAATTCATGC+GGG 0.595664 1_1:+75029706 None:intergenic
AGTGGGTTAGCTACTCTGCT+CGG 0.596257 1_1:+75028255 None:intergenic
TGCCACCGGAAGGATCTGCT+CGG 0.596625 1_1:+75028781 None:intergenic
AGGATTCGATTGCCTTGACA+GGG 0.597575 1_1:-75028067 Msa0043670:CDS
ATAGAATGGGTTAATATCGT+GGG 0.604680 1_1:-75029765 None:intergenic
CCATCTTCTGCAAGGAAGGG+AGG 0.605126 1_1:-75028135 Msa0043670:CDS
CCCTTCCTTGCAGAAGATGG+GGG 0.610451 1_1:+75028138 None:intergenic
ACCCATGACGACGGTGAGAG+GGG 0.613698 1_1:+75028195 None:intergenic
AATCCTTCGACTCTCACCGC+CGG 0.616188 1_1:+75028084 None:intergenic
CAGTAAATTCATTCAACACA+AGG 0.616519 1_1:-75029469 Msa0043670:intron
TTTCGACGAAGGAAGATGAA+CGG 0.620932 1_1:-75028871 Msa0043670:exon
AATTACGGCTGTCCCTGTCA+AGG 0.629306 1_1:+75028055 None:intergenic
ATCGAGCATCCTGAATTAGT+GGG 0.630666 1_1:+75028238 None:intergenic
GGCGGCGACGAGGCTACTGG+AGG 0.632101 1_1:+75028300 None:intergenic
AAATTCACCTGAGATGCCAC+CGG 0.634810 1_1:+75028767 None:intergenic
AAGAAATGAAGAGGTGCAGG+TGG 0.635822 1_1:+75029567 None:intergenic
TAAATATAAAGCAACGAGTG+TGG 0.638706 1_1:-75029621 Msa0043670:five_prime_UTR
TCACCTGAGATGCCACCGGA+AGG 0.642394 1_1:+75028771 None:intergenic
CGAAGTTGAGGAGTCCGACA+CGG 0.647237 1_1:+75028818 None:intergenic
GGAACCACCACCCATGACGA+CGG 0.659927 1_1:+75028186 None:intergenic
GCAGATGAGTTTGAATCACA+CGG 0.662013 1_1:+75028639 None:intergenic
TGTTGTTCTAAGCCAGAGCA+GGG 0.670625 1_1:+75028025 None:intergenic
ATGATGTGATATTACGCGGG+AGG 0.672546 1_1:-75029734 Msa0043670:five_prime_UTR
ACCCGAGCAGATCCTTCCGG+TGG 0.672658 1_1:-75028783 Msa0043670:CDS
AATTCAGGATGCTCGATTCG+GGG 0.678593 1_1:-75028232 Msa0043670:CDS
TATATAGTGACTAAATAATG+CGG 0.682777 1_1:-75027785 Msa0043670:three_prime_UTR
AGTTGAGGAGTCCGACACGG+CGG 0.682882 1_1:+75028821 None:intergenic
TTGAGGAGTCCGACACGGCG+GGG 0.686362 1_1:+75028823 None:intergenic
GCGGGGCTTAGGGCAAACGA+CGG 0.692402 1_1:+75028840 None:intergenic
AAAATGATGTGATATTACGC+GGG 0.699449 1_1:-75029737 Msa0043670:five_prime_UTR
GTAAGTAGAAGAGTCATTAG+GGG 0.703281 1_1:-75027671 Msa0043670:three_prime_UTR
CTTGGACACAATTCTCACCA+AGG 0.706031 1_1:-75028607 Msa0043670:intron
GTATGGTTAATTCATGCGGG+CGG 0.716668 1_1:+75029709 None:intergenic
TGGTTGTAGAAGAAATGAAG+AGG 0.719069 1_1:+75029558 None:intergenic
GGGTTAGCTACTCTGCTCGG+CGG 0.725325 1_1:+75028258 None:intergenic
AAAGTAAAGAGGATGTTGTG+TGG 0.752917 1_1:+75029538 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAGTTTTGTTTTAATTTTA+TGG - chr1_1:75028057-75028076 Msa0043670:CDS 10.0%
!! AAATTCATATAAAATAATAG+AGG + chr1_1:75028715-75028734 None:intergenic 10.0%
!!! CTATTATTTTATATGAATTT+AGG - chr1_1:75028715-75028734 Msa0043670:intron 10.0%
!!! CTATTATTTTATATGAATTT+AGG - chr1_1:75028715-75028734 Msa0043670:intron 10.0%
!!! ATAGTTTTGTTTTAATTTTA+TGG - chr1_1:75028057-75028076 Msa0043670:CDS 10.0%
!! AAATTCATATAAAATAATAG+AGG + chr1_1:75028715-75028734 None:intergenic 10.0%
!!! CTATTATTTTATATGAATTT+AGG - chr1_1:75028715-75028734 Msa0043670:intron 10.0%
!!! CTATTATTTTATATGAATTT+AGG - chr1_1:75028715-75028734 Msa0043670:intron 10.0%
!!! AAGATATTTTTAGTAATGTA+TGG + chr1_1:75027598-75027617 None:intergenic 15.0%
!! AGAAATAGAAATAGAATAAA+AGG + chr1_1:75027896-75027915 None:intergenic 15.0%
!! AAAATTTCATCATGAAAAAA+CGG + chr1_1:75027990-75028009 None:intergenic 15.0%
!!! TGTTTTATTTGTTAGTTTAA+CGG - chr1_1:75028033-75028052 Msa0043670:CDS 15.0%
!!! AACGTGTTTATAATTTATTT+TGG - chr1_1:75028172-75028191 Msa0043670:CDS 15.0%
!!! ATATGAATTTAGGTTAAAAT+TGG - chr1_1:75028725-75028744 Msa0043670:intron 15.0%
!!! AATTGATCTATTTTTAACAT+TGG - chr1_1:75028793-75028812 Msa0043670:CDS 15.0%
!!! TTCATTTTGATTTTCTTTTA+TGG - chr1_1:75029649-75029668 Msa0043670:five_prime_UTR 15.0%
!!! TCATTTTGATTTTCTTTTAT+GGG - chr1_1:75029650-75029669 Msa0043670:five_prime_UTR 15.0%
!!! AAGATATTTTTAGTAATGTA+TGG + chr1_1:75027598-75027617 None:intergenic 15.0%
!! AGAAATAGAAATAGAATAAA+AGG + chr1_1:75027896-75027915 None:intergenic 15.0%
!! AAAATTTCATCATGAAAAAA+CGG + chr1_1:75027990-75028009 None:intergenic 15.0%
!!! TGTTTTATTTGTTAGTTTAA+CGG - chr1_1:75028033-75028052 Msa0043670:CDS 15.0%
!!! AACGTGTTTATAATTTATTT+TGG - chr1_1:75028172-75028191 Msa0043670:CDS 15.0%
!!! ATATGAATTTAGGTTAAAAT+TGG - chr1_1:75028725-75028744 Msa0043670:intron 15.0%
!!! AATTGATCTATTTTTAACAT+TGG - chr1_1:75028793-75028812 Msa0043670:CDS 15.0%
!!! TTCATTTTGATTTTCTTTTA+TGG - chr1_1:75029649-75029668 Msa0043670:five_prime_UTR 15.0%
!!! TCATTTTGATTTTCTTTTAT+GGG - chr1_1:75029650-75029669 Msa0043670:five_prime_UTR 15.0%
!! AGAAATAGAATAAAAGGAAA+CGG + chr1_1:75027890-75027909 None:intergenic 20.0%
!! TTGAATATATGTGGAAAAAA+TGG + chr1_1:75027922-75027941 None:intergenic 20.0%
!! AGATTAAAGTTGAATATATG+TGG + chr1_1:75027931-75027950 None:intergenic 20.0%
!! CGAAAAAACAATAACAATTA+AGG - chr1_1:75028115-75028134 Msa0043670:CDS 20.0%
!!! TTTTCTCTTTTAATTTGCTT+TGG - chr1_1:75028565-75028584 Msa0043670:intron 20.0%
!! TATATAGTGACTAAATAATG+CGG - chr1_1:75029502-75029521 Msa0043670:five_prime_UTR 20.0%
!! TAGTTACAATTACAATTCAT+AGG + chr1_1:75029677-75029696 None:intergenic 20.0%
!! AGAAATAGAATAAAAGGAAA+CGG + chr1_1:75027890-75027909 None:intergenic 20.0%
!! TTGAATATATGTGGAAAAAA+TGG + chr1_1:75027922-75027941 None:intergenic 20.0%
!! AGATTAAAGTTGAATATATG+TGG + chr1_1:75027931-75027950 None:intergenic 20.0%
!! CGAAAAAACAATAACAATTA+AGG - chr1_1:75028115-75028134 Msa0043670:CDS 20.0%
!!! TTTTCTCTTTTAATTTGCTT+TGG - chr1_1:75028565-75028584 Msa0043670:intron 20.0%
!! TATATAGTGACTAAATAATG+CGG - chr1_1:75029502-75029521 Msa0043670:five_prime_UTR 20.0%
!! TAGTTACAATTACAATTCAT+AGG + chr1_1:75029677-75029696 None:intergenic 20.0%
! AAAAATGATGTGATATTACG+CGG - chr1_1:75027549-75027568 Msa0043670:three_prime_UTR 25.0%
! TAATGTATGGTTAATTCATG+CGG + chr1_1:75027585-75027604 None:intergenic 25.0%
! ATTGAAAGAAGAAAGTAAAG+AGG + chr1_1:75027763-75027782 None:intergenic 25.0%
!!! ATATATCTCGTTCTGAATTT+TGG - chr1_1:75028343-75028362 Msa0043670:intron 25.0%
! AATAGAGGAATTATTTACCT+TGG + chr1_1:75028700-75028719 None:intergenic 25.0%
! TGAATTGTAATTGTAACTAC+CGG - chr1_1:75029678-75029697 Msa0043670:five_prime_UTR 25.0%
!!! ACAAATTTTCCTTTTTAAGC+CGG + chr1_1:75029700-75029719 None:intergenic 25.0%
! AAAAATGATGTGATATTACG+CGG - chr1_1:75027549-75027568 Msa0043670:three_prime_UTR 25.0%
! TAATGTATGGTTAATTCATG+CGG + chr1_1:75027585-75027604 None:intergenic 25.0%
! ATTGAAAGAAGAAAGTAAAG+AGG + chr1_1:75027763-75027782 None:intergenic 25.0%
!!! ATATATCTCGTTCTGAATTT+TGG - chr1_1:75028343-75028362 Msa0043670:intron 25.0%
! AATAGAGGAATTATTTACCT+TGG + chr1_1:75028700-75028719 None:intergenic 25.0%
! TGAATTGTAATTGTAACTAC+CGG - chr1_1:75029678-75029697 Msa0043670:five_prime_UTR 25.0%
!!! ACAAATTTTCCTTTTTAAGC+CGG + chr1_1:75029700-75029719 None:intergenic 25.0%
AAAATGATGTGATATTACGC+GGG - chr1_1:75027550-75027569 Msa0043670:three_prime_UTR 30.0%
AATGTATGGTTAATTCATGC+GGG + chr1_1:75027584-75027603 None:intergenic 30.0%
TAAATATAAAGCAACGAGTG+TGG - chr1_1:75027666-75027685 Msa0043670:three_prime_UTR 30.0%
GAATTTACTGTACAAAGCTA+TGG + chr1_1:75027808-75027827 None:intergenic 30.0%
CAGTAAATTCATTCAACACA+AGG - chr1_1:75027818-75027837 Msa0043670:three_prime_UTR 30.0%
AGAAAAGAAAATTTCGACGA+AGG - chr1_1:75028405-75028424 Msa0043670:intron 30.0%
ACACAAAGCAATTCAACAAA+AGG + chr1_1:75028889-75028908 None:intergenic 30.0%
GACACTAGTACAAGAAATAA+GGG + chr1_1:75029567-75029586 None:intergenic 30.0%
AGACACTAGTACAAGAAATA+AGG + chr1_1:75029568-75029587 None:intergenic 30.0%
CTTACAAAGTTACAAACAAG+AGG + chr1_1:75029601-75029620 None:intergenic 30.0%
TTGTAAGTAGAAGAGTCATT+AGG - chr1_1:75029614-75029633 Msa0043670:five_prime_UTR 30.0%
TGTAAGTAGAAGAGTCATTA+GGG - chr1_1:75029615-75029634 Msa0043670:five_prime_UTR 30.0%
TATTTAGCAACTTGAATGAC+AGG - chr1_1:75029759-75029778 Msa0043670:five_prime_UTR 30.0%
AAAATGATGTGATATTACGC+GGG - chr1_1:75027550-75027569 Msa0043670:three_prime_UTR 30.0%
AATGTATGGTTAATTCATGC+GGG + chr1_1:75027584-75027603 None:intergenic 30.0%
TAAATATAAAGCAACGAGTG+TGG - chr1_1:75027666-75027685 Msa0043670:three_prime_UTR 30.0%
GAATTTACTGTACAAAGCTA+TGG + chr1_1:75027808-75027827 None:intergenic 30.0%
CAGTAAATTCATTCAACACA+AGG - chr1_1:75027818-75027837 Msa0043670:three_prime_UTR 30.0%
AGAAAAGAAAATTTCGACGA+AGG - chr1_1:75028405-75028424 Msa0043670:intron 30.0%
ACACAAAGCAATTCAACAAA+AGG + chr1_1:75028889-75028908 None:intergenic 30.0%
GACACTAGTACAAGAAATAA+GGG + chr1_1:75029567-75029586 None:intergenic 30.0%
AGACACTAGTACAAGAAATA+AGG + chr1_1:75029568-75029587 None:intergenic 30.0%
CTTACAAAGTTACAAACAAG+AGG + chr1_1:75029601-75029620 None:intergenic 30.0%
TTGTAAGTAGAAGAGTCATT+AGG - chr1_1:75029614-75029633 Msa0043670:five_prime_UTR 30.0%
TGTAAGTAGAAGAGTCATTA+GGG - chr1_1:75029615-75029634 Msa0043670:five_prime_UTR 30.0%
TGGTTGTAGAAGAAATGAAG+AGG + chr1_1:75027732-75027751 None:intergenic 35.0%
AAAGTAAAGAGGATGTTGTG+TGG + chr1_1:75027752-75027771 None:intergenic 35.0%
TTAAGGTGATTAGAGCTAAG+CGG - chr1_1:75028132-75028151 Msa0043670:CDS 35.0%
GGAAAAATTGTAACAGCTCA+AGG + chr1_1:75028225-75028244 None:intergenic 35.0%
AGAAACGTTCATTTCATGGA+CGG + chr1_1:75028246-75028265 None:intergenic 35.0%
GATGAGAAACGTTCATTTCA+TGG + chr1_1:75028250-75028269 None:intergenic 35.0%
! ACTCTTTTCCTCTTCAAACT+AGG + chr1_1:75029388-75029407 None:intergenic 35.0%
! GTCAATAGTGTCTCTTGTTT+AGG - chr1_1:75029476-75029495 Msa0043670:five_prime_UTR 35.0%
GTGACTAAATAATGCGGTTA+AGG - chr1_1:75029508-75029527 Msa0043670:five_prime_UTR 35.0%
TTGCAGATTGAGGGTTAATT+TGG - chr1_1:75029531-75029550 Msa0043670:five_prime_UTR 35.0%
TGCAGATTGAGGGTTAATTT+GGG - chr1_1:75029532-75029551 Msa0043670:five_prime_UTR 35.0%
CAAAGTTACAAACAAGAGGA+TGG + chr1_1:75029597-75029616 None:intergenic 35.0%
GTAAGTAGAAGAGTCATTAG+GGG - chr1_1:75029616-75029635 Msa0043670:five_prime_UTR 35.0%
!! TTGTAACTACCGGCTTAAAA+AGG - chr1_1:75029688-75029707 Msa0043670:five_prime_UTR 35.0%
TGGTTGTAGAAGAAATGAAG+AGG + chr1_1:75027732-75027751 None:intergenic 35.0%
AAAGTAAAGAGGATGTTGTG+TGG + chr1_1:75027752-75027771 None:intergenic 35.0%
TTAAGGTGATTAGAGCTAAG+CGG - chr1_1:75028132-75028151 Msa0043670:CDS 35.0%
GGAAAAATTGTAACAGCTCA+AGG + chr1_1:75028225-75028244 None:intergenic 35.0%
AGAAACGTTCATTTCATGGA+CGG + chr1_1:75028246-75028265 None:intergenic 35.0%
GATGAGAAACGTTCATTTCA+TGG + chr1_1:75028250-75028269 None:intergenic 35.0%
! ACTCTTTTCCTCTTCAAACT+AGG + chr1_1:75029388-75029407 None:intergenic 35.0%
! GTCAATAGTGTCTCTTGTTT+AGG - chr1_1:75029476-75029495 Msa0043670:five_prime_UTR 35.0%
GTGACTAAATAATGCGGTTA+AGG - chr1_1:75029508-75029527 Msa0043670:five_prime_UTR 35.0%
TTGCAGATTGAGGGTTAATT+TGG - chr1_1:75029531-75029550 Msa0043670:five_prime_UTR 35.0%
TGCAGATTGAGGGTTAATTT+GGG - chr1_1:75029532-75029551 Msa0043670:five_prime_UTR 35.0%
CAAAGTTACAAACAAGAGGA+TGG + chr1_1:75029597-75029616 None:intergenic 35.0%
GTAAGTAGAAGAGTCATTAG+GGG - chr1_1:75029616-75029635 Msa0043670:five_prime_UTR 35.0%
!! TTGTAACTACCGGCTTAAAA+AGG - chr1_1:75029688-75029707 Msa0043670:five_prime_UTR 35.0%
! TAGAAGAAATGAAGAGGTGC+AGG + chr1_1:75027726-75027745 None:intergenic 40.0%
AACAGCTCAAGGTTAAGATC+TGG + chr1_1:75028214-75028233 None:intergenic 40.0%
TTTCGACGAAGGAAGATGAA+CGG - chr1_1:75028416-75028435 Msa0043670:intron 40.0%
TTGAATCACACGGTTCAACT+TGG + chr1_1:75028641-75028660 None:intergenic 40.0%
GCAGATGAGTTTGAATCACA+CGG + chr1_1:75028651-75028670 None:intergenic 40.0%
TTGGTGAGAATTGTGTCCAA+GGG + chr1_1:75028681-75028700 None:intergenic 40.0%
!! GTTGTGCTTTTGTGATTTGC+AGG - chr1_1:75028935-75028954 Msa0043670:intron 40.0%
GCAGGATGATGATTGTGATA+CGG - chr1_1:75028953-75028972 Msa0043670:intron 40.0%
AGTAGCTAACCCACTAATTC+AGG - chr1_1:75029040-75029059 Msa0043670:intron 40.0%
ATCGAGCATCCTGAATTAGT+GGG + chr1_1:75029052-75029071 None:intergenic 40.0%
AATCGAGCATCCTGAATTAG+TGG + chr1_1:75029053-75029072 None:intergenic 40.0%
CTAATTCAGGATGCTCGATT+CGG - chr1_1:75029053-75029072 Msa0043670:intron 40.0%
TAATTCAGGATGCTCGATTC+GGG - chr1_1:75029054-75029073 Msa0043670:intron 40.0%
!! GGCCAATTTTGGTAACAATC+CGG - chr1_1:75029184-75029203 Msa0043670:intron 40.0%
!! CAATTTTGGTAACAATCCGG+CGG - chr1_1:75029187-75029206 Msa0043670:intron 40.0%
CAACCACCATATAAGAGCTA+CGG - chr1_1:75029343-75029362 Msa0043670:intron 40.0%
AACCACCATATAAGAGCTAC+GGG - chr1_1:75029344-75029363 Msa0043670:intron 40.0%
CTTATCCCGTAGCTCTTATA+TGG + chr1_1:75029352-75029371 None:intergenic 40.0%
CATATAAGAGCTACGGGATA+AGG - chr1_1:75029350-75029369 Msa0043670:intron 40.0%
! AGCTACGGGATAAGGAATTT+TGG - chr1_1:75029358-75029377 Msa0043670:intron 40.0%
TTGGATGTCCTAGTTTGAAG+AGG - chr1_1:75029377-75029396 Msa0043670:intron 40.0%
! TAGAAGAAATGAAGAGGTGC+AGG + chr1_1:75027726-75027745 None:intergenic 40.0%
AACAGCTCAAGGTTAAGATC+TGG + chr1_1:75028214-75028233 None:intergenic 40.0%
TTTCGACGAAGGAAGATGAA+CGG - chr1_1:75028416-75028435 Msa0043670:intron 40.0%
TTGAATCACACGGTTCAACT+TGG + chr1_1:75028641-75028660 None:intergenic 40.0%
GCAGATGAGTTTGAATCACA+CGG + chr1_1:75028651-75028670 None:intergenic 40.0%
TTGGTGAGAATTGTGTCCAA+GGG + chr1_1:75028681-75028700 None:intergenic 40.0%
!! GTTGTGCTTTTGTGATTTGC+AGG - chr1_1:75028935-75028954 Msa0043670:intron 40.0%
GCAGGATGATGATTGTGATA+CGG - chr1_1:75028953-75028972 Msa0043670:intron 40.0%
AGTAGCTAACCCACTAATTC+AGG - chr1_1:75029040-75029059 Msa0043670:intron 40.0%
ATCGAGCATCCTGAATTAGT+GGG + chr1_1:75029052-75029071 None:intergenic 40.0%
AATCGAGCATCCTGAATTAG+TGG + chr1_1:75029053-75029072 None:intergenic 40.0%
CTAATTCAGGATGCTCGATT+CGG - chr1_1:75029053-75029072 Msa0043670:intron 40.0%
TAATTCAGGATGCTCGATTC+GGG - chr1_1:75029054-75029073 Msa0043670:intron 40.0%
!! GGCCAATTTTGGTAACAATC+CGG - chr1_1:75029184-75029203 Msa0043670:intron 40.0%
!! CAATTTTGGTAACAATCCGG+CGG - chr1_1:75029187-75029206 Msa0043670:intron 40.0%
CAACCACCATATAAGAGCTA+CGG - chr1_1:75029343-75029362 Msa0043670:intron 40.0%
AACCACCATATAAGAGCTAC+GGG - chr1_1:75029344-75029363 Msa0043670:intron 40.0%
CTTATCCCGTAGCTCTTATA+TGG + chr1_1:75029352-75029371 None:intergenic 40.0%
CATATAAGAGCTACGGGATA+AGG - chr1_1:75029350-75029369 Msa0043670:intron 40.0%
! AGCTACGGGATAAGGAATTT+TGG - chr1_1:75029358-75029377 Msa0043670:intron 40.0%
TTGGATGTCCTAGTTTGAAG+AGG - chr1_1:75029377-75029396 Msa0043670:intron 40.0%
ATGATGTGATATTACGCGGG+AGG - chr1_1:75027553-75027572 Msa0043670:three_prime_UTR 45.0%
GTATGGTTAATTCATGCGGG+CGG + chr1_1:75027581-75027600 None:intergenic 45.0%
! AAGAAATGAAGAGGTGCAGG+TGG + chr1_1:75027723-75027742 None:intergenic 45.0%
AAATTCACCTGAGATGCCAC+CGG + chr1_1:75028523-75028542 None:intergenic 45.0%
CTTGGTGAGAATTGTGTCCA+AGG + chr1_1:75028682-75028701 None:intergenic 45.0%
CTTGGACACAATTCTCACCA+AGG - chr1_1:75028680-75028699 Msa0043670:intron 45.0%
! AATTCAGGATGCTCGATTCG+GGG - chr1_1:75029055-75029074 Msa0043670:intron 45.0%
CGCCGGATTGTTACCAAAAT+TGG + chr1_1:75029189-75029208 None:intergenic 45.0%
AAGGATTCGATTGCCTTGAC+AGG - chr1_1:75029219-75029238 Msa0043670:intron 45.0%
AGGATTCGATTGCCTTGACA+GGG - chr1_1:75029220-75029239 Msa0043670:intron 45.0%
! TGTTGTTCTAAGCCAGAGCA+GGG + chr1_1:75029265-75029284 None:intergenic 45.0%
ATCCCGTAGCTCTTATATGG+TGG + chr1_1:75029349-75029368 None:intergenic 45.0%
CGGTTAAGGTTGCAGATTGA+GGG - chr1_1:75029522-75029541 Msa0043670:five_prime_UTR 45.0%
GTAGAAGAGTCATTAGGGGA+TGG - chr1_1:75029620-75029639 Msa0043670:five_prime_UTR 45.0%
ATGATGTGATATTACGCGGG+AGG - chr1_1:75027553-75027572 Msa0043670:three_prime_UTR 45.0%
GTATGGTTAATTCATGCGGG+CGG + chr1_1:75027581-75027600 None:intergenic 45.0%
! AAGAAATGAAGAGGTGCAGG+TGG + chr1_1:75027723-75027742 None:intergenic 45.0%
AAATTCACCTGAGATGCCAC+CGG + chr1_1:75028523-75028542 None:intergenic 45.0%
CTTGGTGAGAATTGTGTCCA+AGG + chr1_1:75028682-75028701 None:intergenic 45.0%
CTTGGACACAATTCTCACCA+AGG - chr1_1:75028680-75028699 Msa0043670:intron 45.0%
! AATTCAGGATGCTCGATTCG+GGG - chr1_1:75029055-75029074 Msa0043670:intron 45.0%
CGCCGGATTGTTACCAAAAT+TGG + chr1_1:75029189-75029208 None:intergenic 45.0%
AAGGATTCGATTGCCTTGAC+AGG - chr1_1:75029219-75029238 Msa0043670:intron 45.0%
AGGATTCGATTGCCTTGACA+GGG - chr1_1:75029220-75029239 Msa0043670:intron 45.0%
! TGTTGTTCTAAGCCAGAGCA+GGG + chr1_1:75029265-75029284 None:intergenic 45.0%
ATCCCGTAGCTCTTATATGG+TGG + chr1_1:75029349-75029368 None:intergenic 45.0%
CGGTTAAGGTTGCAGATTGA+GGG - chr1_1:75029522-75029541 Msa0043670:five_prime_UTR 45.0%
GTAGAAGAGTCATTAGGGGA+TGG - chr1_1:75029620-75029639 Msa0043670:five_prime_UTR 45.0%
GTGGAACTGCAAGCAAGCTT+GGG + chr1_1:75027704-75027723 None:intergenic 50.0%
CTCATCTGCGTCAAATCCCT+TGG - chr1_1:75028662-75028681 Msa0043670:intron 50.0%
GGAGACCCACAGAAAAATGG+GGG + chr1_1:75029011-75029030 None:intergenic 50.0%
CGGAGACCCACAGAAAAATG+GGG + chr1_1:75029012-75029031 None:intergenic 50.0%
GCGGAGACCCACAGAAAAAT+GGG + chr1_1:75029013-75029032 None:intergenic 50.0%
!! AGTGGGTTAGCTACTCTGCT+CGG + chr1_1:75029035-75029054 None:intergenic 50.0%
TCCCTTCCTTGCAGAAGATG+GGG + chr1_1:75029153-75029172 None:intergenic 50.0%
CTCCCTTCCTTGCAGAAGAT+GGG + chr1_1:75029154-75029173 None:intergenic 50.0%
CAAGGAAGGGAGGATGTGTT+CGG - chr1_1:75029162-75029181 Msa0043670:intron 50.0%
AAGGAAGGGAGGATGTGTTC+GGG - chr1_1:75029163-75029182 Msa0043670:intron 50.0%
! GGATGTGTTCGGGCCAATTT+TGG - chr1_1:75029173-75029192 Msa0043670:intron 50.0%
AATTACGGCTGTCCCTGTCA+AGG + chr1_1:75029235-75029254 None:intergenic 50.0%
GAGCAGGGATGCTGCAATTA+CGG + chr1_1:75029250-75029269 None:intergenic 50.0%
TAATTGCAGCATCCCTGCTC+TGG - chr1_1:75029250-75029269 Msa0043670:intron 50.0%
! CTGTTGTTCTAAGCCAGAGC+AGG + chr1_1:75029266-75029285 None:intergenic 50.0%
GCGGTTAAGGTTGCAGATTG+AGG - chr1_1:75029521-75029540 Msa0043670:five_prime_UTR 50.0%
GTGGAACTGCAAGCAAGCTT+GGG + chr1_1:75027704-75027723 None:intergenic 50.0%
CTCATCTGCGTCAAATCCCT+TGG - chr1_1:75028662-75028681 Msa0043670:intron 50.0%
GGAGACCCACAGAAAAATGG+GGG + chr1_1:75029011-75029030 None:intergenic 50.0%
CGGAGACCCACAGAAAAATG+GGG + chr1_1:75029012-75029031 None:intergenic 50.0%
GCGGAGACCCACAGAAAAAT+GGG + chr1_1:75029013-75029032 None:intergenic 50.0%
!! AGTGGGTTAGCTACTCTGCT+CGG + chr1_1:75029035-75029054 None:intergenic 50.0%
TCCCTTCCTTGCAGAAGATG+GGG + chr1_1:75029153-75029172 None:intergenic 50.0%
CTCCCTTCCTTGCAGAAGAT+GGG + chr1_1:75029154-75029173 None:intergenic 50.0%
CAAGGAAGGGAGGATGTGTT+CGG - chr1_1:75029162-75029181 Msa0043670:intron 50.0%
AAGGAAGGGAGGATGTGTTC+GGG - chr1_1:75029163-75029182 Msa0043670:intron 50.0%
! GGATGTGTTCGGGCCAATTT+TGG - chr1_1:75029173-75029192 Msa0043670:intron 50.0%
AATTACGGCTGTCCCTGTCA+AGG + chr1_1:75029235-75029254 None:intergenic 50.0%
GAGCAGGGATGCTGCAATTA+CGG + chr1_1:75029250-75029269 None:intergenic 50.0%
TAATTGCAGCATCCCTGCTC+TGG - chr1_1:75029250-75029269 Msa0043670:intron 50.0%
! CTGTTGTTCTAAGCCAGAGC+AGG + chr1_1:75029266-75029285 None:intergenic 50.0%
GCGGTTAAGGTTGCAGATTG+AGG - chr1_1:75029521-75029540 Msa0043670:five_prime_UTR 50.0%
GGTGGAACTGCAAGCAAGCT+TGG + chr1_1:75027705-75027724 None:intergenic 55.0%
CGAAGTTGAGGAGTCCGACA+CGG + chr1_1:75028472-75028491 None:intergenic 55.0%
AGTCGTTGACGGCGAAGTTG+AGG + chr1_1:75028484-75028503 None:intergenic 55.0%
TCTGCTCGGGTAGTCGTTGA+CGG + chr1_1:75028495-75028514 None:intergenic 55.0%
ACTACCCGAGCAGATCCTTC+CGG - chr1_1:75028501-75028520 Msa0043670:intron 55.0%
GACCCACAGAAAAATGGGGG+CGG + chr1_1:75029008-75029027 None:intergenic 55.0%
GGCGGAGACCCACAGAAAAA+TGG + chr1_1:75029014-75029033 None:intergenic 55.0%
CTTGCAGAAGATGGGGGAGA+AGG + chr1_1:75029146-75029165 None:intergenic 55.0%
CTTCTCCCCCATCTTCTGCA+AGG - chr1_1:75029144-75029163 Msa0043670:intron 55.0%
TCCCCCATCTTCTGCAAGGA+AGG - chr1_1:75029148-75029167 Msa0043670:intron 55.0%
CCCTTCCTTGCAGAAGATGG+GGG + chr1_1:75029152-75029171 None:intergenic 55.0%
CCCCCATCTTCTGCAAGGAA+GGG - chr1_1:75029149-75029168 Msa0043670:intron 55.0%
CCTCCCTTCCTTGCAGAAGA+TGG + chr1_1:75029155-75029174 None:intergenic 55.0%
CCATCTTCTGCAAGGAAGGG+AGG - chr1_1:75029152-75029171 Msa0043670:intron 55.0%
AATCCTTCGACTCTCACCGC+CGG + chr1_1:75029206-75029225 None:intergenic 55.0%
GGTGGAACTGCAAGCAAGCT+TGG + chr1_1:75027705-75027724 None:intergenic 55.0%
CGAAGTTGAGGAGTCCGACA+CGG + chr1_1:75028472-75028491 None:intergenic 55.0%
AGTCGTTGACGGCGAAGTTG+AGG + chr1_1:75028484-75028503 None:intergenic 55.0%
TCTGCTCGGGTAGTCGTTGA+CGG + chr1_1:75028495-75028514 None:intergenic 55.0%
ACTACCCGAGCAGATCCTTC+CGG - chr1_1:75028501-75028520 Msa0043670:intron 55.0%
GACCCACAGAAAAATGGGGG+CGG + chr1_1:75029008-75029027 None:intergenic 55.0%
GGCGGAGACCCACAGAAAAA+TGG + chr1_1:75029014-75029033 None:intergenic 55.0%
CTTGCAGAAGATGGGGGAGA+AGG + chr1_1:75029146-75029165 None:intergenic 55.0%
CTTCTCCCCCATCTTCTGCA+AGG - chr1_1:75029144-75029163 Msa0043670:intron 55.0%
TCCCCCATCTTCTGCAAGGA+AGG - chr1_1:75029148-75029167 Msa0043670:intron 55.0%
CCCTTCCTTGCAGAAGATGG+GGG + chr1_1:75029152-75029171 None:intergenic 55.0%
CCCCCATCTTCTGCAAGGAA+GGG - chr1_1:75029149-75029168 Msa0043670:intron 55.0%
CCTCCCTTCCTTGCAGAAGA+TGG + chr1_1:75029155-75029174 None:intergenic 55.0%
CCATCTTCTGCAAGGAAGGG+AGG - chr1_1:75029152-75029171 Msa0043670:intron 55.0%
AATCCTTCGACTCTCACCGC+CGG + chr1_1:75029206-75029225 None:intergenic 55.0%
AGTTGAGGAGTCCGACACGG+CGG + chr1_1:75028469-75028488 None:intergenic 60.0%
TGCCACCGGAAGGATCTGCT+CGG + chr1_1:75028509-75028528 None:intergenic 60.0%
GATCCTTCCGGTGGCATCTC+AGG - chr1_1:75028513-75028532 Msa0043670:intron 60.0%
TCACCTGAGATGCCACCGGA+AGG + chr1_1:75028519-75028538 None:intergenic 60.0%
!! TCGCCGCCCCCATTTTTCTG+TGG - chr1_1:75029002-75029021 Msa0043670:intron 60.0%
!! CGCCGCCCCCATTTTTCTGT+GGG - chr1_1:75029003-75029022 Msa0043670:intron 60.0%
!! GGGTTAGCTACTCTGCTCGG+CGG + chr1_1:75029032-75029051 None:intergenic 60.0%
ACCCATGACGACGGTGAGAG+GGG + chr1_1:75029095-75029114 None:intergenic 60.0%
CACCCATGACGACGGTGAGA+GGG + chr1_1:75029096-75029115 None:intergenic 60.0%
GGAACCACCACCCATGACGA+CGG + chr1_1:75029104-75029123 None:intergenic 60.0%
AGAAGGTGGCAGACCGGATG+GGG + chr1_1:75029129-75029148 None:intergenic 60.0%
GAGAAGGTGGCAGACCGGAT+GGG + chr1_1:75029130-75029149 None:intergenic 60.0%
GCAGAAGATGGGGGAGAAGG+TGG + chr1_1:75029143-75029162 None:intergenic 60.0%
AATCCGGCGGTGAGAGTCGA+AGG - chr1_1:75029200-75029219 Msa0043670:intron 60.0%
AGTTGAGGAGTCCGACACGG+CGG + chr1_1:75028469-75028488 None:intergenic 60.0%
TGCCACCGGAAGGATCTGCT+CGG + chr1_1:75028509-75028528 None:intergenic 60.0%
GATCCTTCCGGTGGCATCTC+AGG - chr1_1:75028513-75028532 Msa0043670:intron 60.0%
TCACCTGAGATGCCACCGGA+AGG + chr1_1:75028519-75028538 None:intergenic 60.0%
!! TCGCCGCCCCCATTTTTCTG+TGG - chr1_1:75029002-75029021 Msa0043670:intron 60.0%
!! CGCCGCCCCCATTTTTCTGT+GGG - chr1_1:75029003-75029022 Msa0043670:intron 60.0%
!! GGGTTAGCTACTCTGCTCGG+CGG + chr1_1:75029032-75029051 None:intergenic 60.0%
ACCCATGACGACGGTGAGAG+GGG + chr1_1:75029095-75029114 None:intergenic 60.0%
CACCCATGACGACGGTGAGA+GGG + chr1_1:75029096-75029115 None:intergenic 60.0%
GGAACCACCACCCATGACGA+CGG + chr1_1:75029104-75029123 None:intergenic 60.0%
AGAAGGTGGCAGACCGGATG+GGG + chr1_1:75029129-75029148 None:intergenic 60.0%
GAGAAGGTGGCAGACCGGAT+GGG + chr1_1:75029130-75029149 None:intergenic 60.0%
GCAGAAGATGGGGGAGAAGG+TGG + chr1_1:75029143-75029162 None:intergenic 60.0%
AATCCGGCGGTGAGAGTCGA+AGG - chr1_1:75029200-75029219 Msa0043670:intron 60.0%
GCGGGGCTTAGGGCAAACGA+CGG + chr1_1:75028450-75028469 None:intergenic 65.0%
TTGAGGAGTCCGACACGGCG+GGG + chr1_1:75028467-75028486 None:intergenic 65.0%
GTTGAGGAGTCCGACACGGC+GGG + chr1_1:75028468-75028487 None:intergenic 65.0%
ACCCGAGCAGATCCTTCCGG+TGG - chr1_1:75028504-75028523 Msa0043670:intron 65.0%
GCCACCGGAAGGATCTGCTC+GGG + chr1_1:75028508-75028527 None:intergenic 65.0%
GAAAAATGGGGGCGGCGACG+AGG + chr1_1:75029000-75029019 None:intergenic 65.0%
GCCCCTCTCACCGTCGTCAT+GGG - chr1_1:75029091-75029110 Msa0043670:intron 65.0%
CCACCCATGACGACGGTGAG+AGG + chr1_1:75029097-75029116 None:intergenic 65.0%
CCTCTCACCGTCGTCATGGG+TGG - chr1_1:75029094-75029113 Msa0043670:intron 65.0%
CTCACCGTCGTCATGGGTGG+TGG - chr1_1:75029097-75029116 Msa0043670:intron 65.0%
GTGGTGGTTCCTGCCCCATC+CGG - chr1_1:75029113-75029132 Msa0043670:intron 65.0%
GGAGAAGGTGGCAGACCGGA+TGG + chr1_1:75029131-75029150 None:intergenic 65.0%
TGGGGGAGAAGGTGGCAGAC+CGG + chr1_1:75029135-75029154 None:intergenic 65.0%
GCGGGGCTTAGGGCAAACGA+CGG + chr1_1:75028450-75028469 None:intergenic 65.0%
TTGAGGAGTCCGACACGGCG+GGG + chr1_1:75028467-75028486 None:intergenic 65.0%
GTTGAGGAGTCCGACACGGC+GGG + chr1_1:75028468-75028487 None:intergenic 65.0%
ACCCGAGCAGATCCTTCCGG+TGG - chr1_1:75028504-75028523 Msa0043670:intron 65.0%
GCCACCGGAAGGATCTGCTC+GGG + chr1_1:75028508-75028527 None:intergenic 65.0%
GAAAAATGGGGGCGGCGACG+AGG + chr1_1:75029000-75029019 None:intergenic 65.0%
GCCCCTCTCACCGTCGTCAT+GGG - chr1_1:75029091-75029110 Msa0043670:intron 65.0%
CCACCCATGACGACGGTGAG+AGG + chr1_1:75029097-75029116 None:intergenic 65.0%
CCTCTCACCGTCGTCATGGG+TGG - chr1_1:75029094-75029113 Msa0043670:intron 65.0%
CTCACCGTCGTCATGGGTGG+TGG - chr1_1:75029097-75029116 Msa0043670:intron 65.0%
GTGGTGGTTCCTGCCCCATC+CGG - chr1_1:75029113-75029132 Msa0043670:intron 65.0%
GGAGAAGGTGGCAGACCGGA+TGG + chr1_1:75029131-75029150 None:intergenic 65.0%
TGGGGGAGAAGGTGGCAGAC+CGG + chr1_1:75029135-75029154 None:intergenic 65.0%
TGCCCTAAGCCCCGCCGTGT+CGG - chr1_1:75028455-75028474 Msa0043670:intron 70.0%
GTCCGACACGGCGGGGCTTA+GGG + chr1_1:75028460-75028479 None:intergenic 70.0%
AGTCCGACACGGCGGGGCTT+AGG + chr1_1:75028461-75028480 None:intergenic 70.0%
CGCCCCTCTCACCGTCGTCA+TGG - chr1_1:75029090-75029109 Msa0043670:intron 70.0%
TGCCCTAAGCCCCGCCGTGT+CGG - chr1_1:75028455-75028474 Msa0043670:intron 70.0%
GTCCGACACGGCGGGGCTTA+GGG + chr1_1:75028460-75028479 None:intergenic 70.0%
AGTCCGACACGGCGGGGCTT+AGG + chr1_1:75028461-75028480 None:intergenic 70.0%
CGCCCCTCTCACCGTCGTCA+TGG - chr1_1:75029090-75029109 Msa0043670:intron 70.0%
GGCGGCGACGAGGCTACTGG+AGG + chr1_1:75028990-75029009 None:intergenic 75.0%
GGTGGCAGACCGGATGGGGC+AGG + chr1_1:75029125-75029144 None:intergenic 75.0%
GGCGGCGACGAGGCTACTGG+AGG + chr1_1:75028990-75029009 None:intergenic 75.0%
GGTGGCAGACCGGATGGGGC+AGG + chr1_1:75029125-75029144 None:intergenic 75.0%
! GGGGGCGGCGACGAGGCTAC+TGG + chr1_1:75028993-75029012 None:intergenic 80.0%
! GGGGGCGGCGACGAGGCTAC+TGG + chr1_1:75028993-75029012 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 75027530 75029779 75027530 ID=Msa0043670;Name=Msa0043670
chr1_1 mRNA 75027530 75029779 75027530 ID=Msa0043670-mRNA-1;Parent=Msa0043670;Name=Msa0043670-mRNA-1;_AED=0.16;_eAED=0.16;_QI=346|1|1|1|0.66|0.5|4|502|163
chr1_1 exon 75027530 75028352 75027530 ID=Msa0043670-mRNA-1:exon:25327;Parent=Msa0043670-mRNA-1
chr1_1 exon 75028608 75028674 75028608 ID=Msa0043670-mRNA-1:exon:25326;Parent=Msa0043670-mRNA-1
chr1_1 exon 75028775 75028914 75028775 ID=Msa0043670-mRNA-1:exon:25325;Parent=Msa0043670-mRNA-1
chr1_1 exon 75029470 75029779 75029470 ID=Msa0043670-mRNA-1:exon:25324;Parent=Msa0043670-mRNA-1
chr1_1 five_prime_UTR 75029470 75029779 75029470 ID=Msa0043670-mRNA-1:five_prime_utr;Parent=Msa0043670-mRNA-1
chr1_1 five_prime_UTR 75028879 75028914 75028879 ID=Msa0043670-mRNA-1:five_prime_utr;Parent=Msa0043670-mRNA-1
chr1_1 CDS 75028775 75028878 75028775 ID=Msa0043670-mRNA-1:cds;Parent=Msa0043670-mRNA-1
chr1_1 CDS 75028608 75028674 75028608 ID=Msa0043670-mRNA-1:cds;Parent=Msa0043670-mRNA-1
chr1_1 CDS 75028032 75028352 75028032 ID=Msa0043670-mRNA-1:cds;Parent=Msa0043670-mRNA-1
chr1_1 three_prime_UTR 75027530 75028031 75027530 ID=Msa0043670-mRNA-1:three_prime_utr;Parent=Msa0043670-mRNA-1
Gene Sequence

>Msa0043670

ATGAACGGAAGAGACTCCGTCGTTTGCCCTAAGCCCCGCCGTGTCGGACTCCTCAACTTCGCCGTCAACGACTACCCGAGCAGATCCTTCCGGTGGCATCTCAGTTGCCAAGTTGAACCGTGTGATTCAAACTCATCTGCGTCAAATCCCTTGGACACAATTCTCACCAAGGATGATGATTGTGATACGGAACAATCAAGTCCTCCAGTAGCCTCGTCGCCGCCCCCATTTTTCTGTGGGTCTCCGCCGAGCAGAGTAGCTAACCCACTAATTCAGGATGCTCGATTCGGGGATGAGAATTTCTCGCCCCTCTCACCGTCGTCATGGGTGGTGGTTCCTGCCCCATCCGGTCTGCCACCTTCTCCCCCATCTTCTGCAAGGAAGGGAGGATGTGTTCGGGCCAATTTTGGTAACAATCCGGCGGTGAGAGTCGAAGGATTCGATTGCCTTGACAGGGACAGCCGTAATTGCAGCATCCCTGCTCTGGCTTAG
Protein sequence

>Msa0043670

MNGRDSVVCPKPRRVGLLNFAVNDYPSRSFRWHLSCQVEPCDSNSSASNPLDTILTKDDDCDTEQSSPPVASSPPPFFCGSPPSRVANPLIQDARFGDENFSPLSPSSWVVVPAPSGLPPSPPSSARKGGCVRANFGNNPAVRVEGFDCLDRDSRNCSIPALA*