Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571880 | XP_013447087.1 | 93.987 | 632 | 14 | 4 | 1 | 620 | 1 | 620 | 0.0 | 1159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571880 | sp|Q38897|BEL1_ARATH | 41.842 | 619 | 223 | 24 | 94 | 620 | 38 | 611 | 1.14e-116 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571880 | A0A072TUA6 | 93.987 | 632 | 14 | 4 | 1 | 620 | 1 | 620 | 0.0 | 1159 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025690 | Msa0571880 | 0.821976 | 3.032204e-53 | -8.615850e-47 |
| Msa0099270 | Msa0571880 | 0.814195 | 1.743527e-51 | -8.615850e-47 |
| Msa0195030 | Msa0571880 | -0.802127 | 6.502087e-49 | -8.615850e-47 |
| Msa0225370 | Msa0571880 | 0.800149 | 1.649936e-48 | -8.615850e-47 |
| Msa0341860 | Msa0571880 | 0.800586 | 1.344780e-48 | -8.615850e-47 |
| Msa0526490 | Msa0571880 | 0.869562 | 2.821843e-66 | -8.615850e-47 |
| Msa0526500 | Msa0571880 | 0.815250 | 1.017726e-51 | -8.615850e-47 |
| Msa0571880 | Msa0646180 | 0.808534 | 2.954595e-50 | -8.615850e-47 |
| Msa0571880 | Msa1359880 | 0.809062 | 2.278554e-50 | -8.615850e-47 |
| Msa0571880 | Msa1363270 | 0.865544 | 5.467503e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571880 | MtrunA17_Chr8g0387321 | 93.987 | 632 | 14 | 4 | 1 | 620 | 1 | 620 | 0.0 | 1159 |
| Msa0571880 | MtrunA17_Chr5g0403251 | 40.941 | 425 | 202 | 9 | 184 | 567 | 325 | 741 | 2.07e-85 | 282 |
| Msa0571880 | MtrunA17_Chr8g0373801 | 51.342 | 298 | 107 | 5 | 183 | 442 | 354 | 651 | 8.07e-82 | 275 |
| Msa0571880 | MtrunA17_Chr1g0155681 | 48.134 | 268 | 97 | 6 | 198 | 437 | 173 | 426 | 2.09e-69 | 236 |
| Msa0571880 | MtrunA17_Chr7g0267481 | 45.455 | 341 | 150 | 8 | 132 | 449 | 113 | 440 | 1.40e-64 | 224 |
| Msa0571880 | MtrunA17_Chr4g0025521 | 48.889 | 270 | 119 | 4 | 199 | 452 | 221 | 487 | 1.71e-64 | 225 |
| Msa0571880 | MtrunA17_Chr3g0141941 | 42.321 | 293 | 118 | 7 | 188 | 450 | 157 | 428 | 6.22e-64 | 219 |
| Msa0571880 | MtrunA17_Chr1g0177751 | 45.890 | 292 | 116 | 5 | 195 | 459 | 161 | 437 | 3.00e-63 | 220 |
| Msa0571880 | MtrunA17_Chr4g0028701 | 39.465 | 299 | 126 | 7 | 195 | 439 | 245 | 542 | 1.76e-51 | 188 |
| Msa0571880 | MtrunA17_Chr7g0240371 | 33.030 | 439 | 217 | 14 | 195 | 618 | 137 | 513 | 2.23e-51 | 185 |
| Msa0571880 | MtrunA17_Chr3g0141931 | 41.132 | 265 | 123 | 8 | 195 | 437 | 165 | 418 | 3.25e-50 | 180 |
| Msa0571880 | MtrunA17_Chr4g0008591 | 33.040 | 454 | 227 | 11 | 195 | 620 | 196 | 600 | 3.39e-50 | 183 |
| Msa0571880 | MtrunA17_Chr2g0327021 | 39.405 | 269 | 134 | 6 | 195 | 439 | 248 | 511 | 4.44e-45 | 169 |
| Msa0571880 | MtrunA17_Chr1g0151681 | 35.377 | 212 | 112 | 6 | 264 | 463 | 318 | 516 | 4.83e-31 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571880 | AT5G41410.1 | 41.842 | 619 | 223 | 24 | 94 | 620 | 38 | 611 | 1.15e-117 | 363 |
| Msa0571880 | AT2G23760.2 | 51.550 | 258 | 110 | 2 | 192 | 434 | 234 | 491 | 8.57e-79 | 262 |
| Msa0571880 | AT2G23760.1 | 51.550 | 258 | 110 | 2 | 192 | 434 | 234 | 491 | 8.57e-79 | 262 |
| Msa0571880 | AT2G23760.3 | 51.550 | 258 | 110 | 2 | 192 | 434 | 234 | 491 | 8.57e-79 | 262 |
| Msa0571880 | AT4G36870.2 | 52.896 | 259 | 98 | 4 | 195 | 434 | 312 | 565 | 1.05e-78 | 265 |
| Msa0571880 | AT4G36870.1 | 52.896 | 259 | 98 | 4 | 195 | 434 | 312 | 565 | 1.05e-78 | 265 |
| Msa0571880 | AT4G34610.2 | 43.860 | 342 | 156 | 7 | 156 | 472 | 94 | 424 | 9.59e-70 | 235 |
| Msa0571880 | AT4G34610.4 | 43.860 | 342 | 156 | 7 | 156 | 472 | 94 | 424 | 9.59e-70 | 235 |
| Msa0571880 | AT4G34610.3 | 43.860 | 342 | 156 | 7 | 156 | 472 | 94 | 424 | 9.59e-70 | 235 |
| Msa0571880 | AT4G34610.1 | 43.860 | 342 | 156 | 7 | 156 | 472 | 94 | 424 | 9.59e-70 | 235 |
| Msa0571880 | AT1G19700.1 | 50.195 | 257 | 106 | 6 | 199 | 437 | 169 | 421 | 1.78e-68 | 232 |
| Msa0571880 | AT1G19700.3 | 50.195 | 257 | 106 | 6 | 199 | 437 | 169 | 421 | 1.78e-68 | 232 |
| Msa0571880 | AT1G19700.5 | 50.195 | 257 | 106 | 6 | 199 | 437 | 169 | 421 | 1.78e-68 | 232 |
| Msa0571880 | AT1G19700.4 | 50.195 | 257 | 106 | 6 | 199 | 437 | 169 | 421 | 1.78e-68 | 232 |
| Msa0571880 | AT1G19700.2 | 50.195 | 257 | 106 | 6 | 199 | 437 | 169 | 421 | 1.78e-68 | 232 |
| Msa0571880 | AT1G75410.1 | 50.198 | 253 | 105 | 6 | 199 | 437 | 171 | 416 | 2.06e-68 | 232 |
| Msa0571880 | AT1G75410.2 | 50.198 | 253 | 105 | 6 | 199 | 437 | 171 | 416 | 2.06e-68 | 232 |
| Msa0571880 | AT2G16400.1 | 48.819 | 254 | 105 | 5 | 196 | 437 | 115 | 355 | 6.74e-67 | 226 |
| Msa0571880 | AT4G36870.4 | 52.752 | 218 | 91 | 3 | 195 | 405 | 312 | 524 | 7.41e-65 | 223 |
| Msa0571880 | AT4G36870.3 | 52.752 | 218 | 91 | 3 | 195 | 405 | 312 | 524 | 1.65e-64 | 222 |
| Msa0571880 | AT2G23760.4 | 49.782 | 229 | 112 | 1 | 192 | 417 | 234 | 462 | 3.72e-64 | 224 |
| Msa0571880 | AT2G35940.3 | 39.379 | 419 | 193 | 9 | 196 | 561 | 190 | 600 | 1.06e-60 | 214 |
| Msa0571880 | AT2G35940.1 | 39.379 | 419 | 193 | 9 | 196 | 561 | 190 | 600 | 1.06e-60 | 214 |
| Msa0571880 | AT2G35940.2 | 39.379 | 419 | 193 | 9 | 196 | 561 | 190 | 600 | 1.06e-60 | 214 |
| Msa0571880 | AT1G75410.3 | 50.000 | 212 | 91 | 5 | 199 | 405 | 171 | 372 | 4.97e-54 | 190 |
| Msa0571880 | AT1G75430.1 | 43.810 | 210 | 96 | 4 | 249 | 437 | 64 | 272 | 1.06e-50 | 177 |
| Msa0571880 | AT2G27220.1 | 38.153 | 249 | 110 | 5 | 201 | 437 | 82 | 298 | 5.39e-46 | 169 |
| Msa0571880 | AT2G27220.3 | 38.153 | 249 | 110 | 5 | 201 | 437 | 82 | 298 | 5.39e-46 | 169 |
| Msa0571880 | AT5G02030.1 | 39.015 | 264 | 125 | 6 | 195 | 437 | 170 | 418 | 2.31e-43 | 164 |
| Msa0571880 | AT2G27990.1 | 37.954 | 303 | 141 | 8 | 156 | 439 | 222 | 496 | 2.41e-43 | 164 |
| Msa0571880 | AT2G27220.2 | 35.581 | 267 | 110 | 6 | 201 | 437 | 82 | 316 | 3.70e-42 | 158 |
| Msa0571880 | AT1G75430.2 | 41.916 | 167 | 87 | 3 | 249 | 406 | 64 | 229 | 4.01e-35 | 134 |
| Msa0571880 | AT4G32980.1 | 33.696 | 276 | 144 | 9 | 195 | 451 | 201 | 456 | 6.65e-33 | 132 |
| Msa0571880 | AT4G32980.2 | 33.696 | 276 | 144 | 9 | 195 | 451 | 201 | 456 | 6.65e-33 | 132 |
| Msa0571880 | AT2G27990.2 | 36.187 | 257 | 129 | 7 | 156 | 405 | 222 | 450 | 5.48e-31 | 126 |
Find 123 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCGGTTCAGTACTCTCTTT+TGG | 0.253768 | 4_1:+74636470 | Msa0571880:CDS |
| AACGTTCTGTTTCAATTCTC+AGG | 0.263185 | 4_1:+74635015 | Msa0571880:CDS |
| CTGTTTCAATTCTCAGGGCT+TGG | 0.264891 | 4_1:+74635021 | Msa0571880:CDS |
| CAAACGCATCCGCGGCTAAT+TGG | 0.275675 | 4_1:-74636230 | None:intergenic |
| GTTTCACCCTTTGTTGTTCC+AGG | 0.285076 | 4_1:-74634888 | None:intergenic |
| TGGGTATATGAAGACTAATT+TGG | 0.285694 | 4_1:+74633193 | None:intergenic |
| AATGGTGGAAGAAATGTATT+TGG | 0.286857 | 4_1:+74635984 | Msa0571880:CDS |
| GTGAATTAATTTATATTATG+AGG | 0.293121 | 4_1:-74633403 | None:intergenic |
| ACTGAACCGGTTCTTCAATT+TGG | 0.298745 | 4_1:-74636458 | None:intergenic |
| TCAACAAACCCTTCCTCTAT+TGG | 0.302539 | 4_1:+74633970 | Msa0571880:CDS |
| TTGAAAAGCAGGTATCAAAT+TGG | 0.320064 | 4_1:+74635929 | Msa0571880:intron |
| TTTGTTGTTCCAGGTGCAAC+AGG | 0.331439 | 4_1:-74634879 | None:intergenic |
| TTGGTTGTATTTATAAATCT+TGG | 0.335531 | 4_1:+74633212 | Msa0571880:five_prime_UTR |
| CATGAGGTTGAGTTTGAGAT+TGG | 0.355537 | 4_1:-74636098 | None:intergenic |
| TGCGAAAGTTTATTCAGCTT+TGG | 0.371886 | 4_1:+74634764 | Msa0571880:CDS |
| CAATTAGCCGCGGATGCGTT+TGG | 0.383986 | 4_1:+74636231 | Msa0571880:CDS |
| TTAATGCAAGAGTGAGACTA+TGG | 0.389784 | 4_1:+74635956 | Msa0571880:CDS |
| GGTGGAGTGTCATTGACGTT+AGG | 0.399182 | 4_1:+74636357 | Msa0571880:CDS |
| TTCTAATTCTATTAGAAGTA+AGG | 0.403243 | 4_1:+74635135 | Msa0571880:CDS |
| TTTGAAGCTGTAGCTGGAAA+TGG | 0.404194 | 4_1:+74634738 | Msa0571880:CDS |
| ATAATATTTAGGTTGATAGA+AGG | 0.409270 | 4_1:+74634673 | Msa0571880:intron |
| TTACAACAACATGGTGGAAA+TGG | 0.409545 | 4_1:+74636381 | Msa0571880:CDS |
| ATGTTGTTGTTGATGTTGTT+TGG | 0.410264 | 4_1:-74633626 | None:intergenic |
| AGTTCAACAACAAGCAAAGT+TGG | 0.418663 | 4_1:+74634175 | Msa0571880:CDS |
| CTCCACCACTGCTGCCACCT+TGG | 0.420187 | 4_1:-74636341 | None:intergenic |
| TGAAATCTTGATGTTGTTGT+TGG | 0.430842 | 4_1:-74633765 | None:intergenic |
| GTAGTGAGATTAAACATCTC+TGG | 0.433803 | 4_1:-74633580 | None:intergenic |
| TGAATTAATTTATATTATGA+GGG | 0.438589 | 4_1:-74633402 | None:intergenic |
| CTTAACAAGTGATGAGTCAA+TGG | 0.447843 | 4_1:-74633236 | None:intergenic |
| TGGTGGAAATGGAGTGAGTT+TGG | 0.455316 | 4_1:+74636392 | Msa0571880:CDS |
| AAATACATTTCTTCCACCAT+TGG | 0.455432 | 4_1:-74635982 | None:intergenic |
| AATCATCATTTACAAGATCA+AGG | 0.456108 | 4_1:+74634024 | Msa0571880:CDS |
| TGGATTTGTGTTTGAATCGT+TGG | 0.458396 | 4_1:-74633541 | None:intergenic |
| TCATCATTTGAAGCTGTAGC+TGG | 0.459401 | 4_1:+74634732 | Msa0571880:CDS |
| GAGATGTTTAATCTCACTAC+AGG | 0.460320 | 4_1:+74633583 | Msa0571880:CDS |
| ATGATTGTTGTTGATGATAG+AGG | 0.462600 | 4_1:-74636166 | None:intergenic |
| CACCACTGCTGCCACCTTGG+TGG | 0.462654 | 4_1:-74636338 | None:intergenic |
| AAGGGACCAAATTGAAGAAC+CGG | 0.465720 | 4_1:+74636452 | Msa0571880:CDS |
| AGAAGATGAGATAGCTAGAG+AGG | 0.471063 | 4_1:-74633327 | None:intergenic |
| ATGTGGAAAACAAATTTCTC+AGG | 0.472948 | 4_1:+74633673 | Msa0571880:CDS |
| GTGGAGTGTCATTGACGTTA+GGG | 0.474230 | 4_1:+74636358 | Msa0571880:CDS |
| GAACAAATATTATGCCATAC+AGG | 0.476848 | 4_1:+74636502 | Msa0571880:CDS |
| GTTCAACAACAAGCAAAGTT+GGG | 0.479946 | 4_1:+74634176 | Msa0571880:CDS |
| AAAGAGAGTATATGATAGCA+TGG | 0.487912 | 4_1:+74633288 | Msa0571880:five_prime_UTR |
| CACCAAGGTGGCAGCAGTGG+TGG | 0.491693 | 4_1:+74636339 | Msa0571880:CDS |
| AGAATTGAAACAGAACGTTC+AGG | 0.492761 | 4_1:-74635011 | None:intergenic |
| AAAAGATTGTAAACCAATAG+AGG | 0.498080 | 4_1:-74633983 | None:intergenic |
| ACTACAGGGATGGAGATGAT+AGG | 0.502219 | 4_1:+74633598 | Msa0571880:CDS |
| TCCAAAAGAGAGTACTGAAC+CGG | 0.513134 | 4_1:-74636471 | None:intergenic |
| TCATTGAGAAGTTCTTGTGC+TGG | 0.515977 | 4_1:-74634090 | None:intergenic |
| ACGTTCTGTTTCAATTCTCA+GGG | 0.517994 | 4_1:+74635016 | Msa0571880:CDS |
| TTACAAGATCAAGGGTATCA+AGG | 0.518553 | 4_1:+74634033 | Msa0571880:CDS |
| TCAAACAACAAGAAAAGCAA+TGG | 0.524152 | 4_1:+74634845 | Msa0571880:CDS |
| ACATGATGGAAACACATCCT+TGG | 0.528940 | 4_1:+74634970 | Msa0571880:CDS |
| TTCCACCAAGGTGGCAGCAG+TGG | 0.532318 | 4_1:+74636336 | Msa0571880:CDS |
| ATAATATACCTCTTCTAGCA+TGG | 0.533662 | 4_1:-74634298 | None:intergenic |
| GACACAATTGCTACATGACT+TGG | 0.534189 | 4_1:+74636536 | Msa0571880:CDS |
| ACGACTCCTTCGAATCGATT+CGG | 0.534329 | 4_1:+74636134 | Msa0571880:CDS |
| GTTGCACCTGGAACAACAAA+GGG | 0.538924 | 4_1:+74634882 | Msa0571880:CDS |
| AACACGACAACCTCGGACGG+AGG | 0.540366 | 4_1:+74636030 | Msa0571880:CDS |
| CAAACAACAAGAAAAGCAAT+GGG | 0.541294 | 4_1:+74634846 | Msa0571880:CDS |
| GATTGTAAACCAATAGAGGA+AGG | 0.551563 | 4_1:-74633979 | None:intergenic |
| AGCCGCGGATGCGTTTGGAT+CGG | 0.552377 | 4_1:+74636236 | Msa0571880:CDS |
| CTGGATCCGACACAAAACCT+TGG | 0.555288 | 4_1:-74633561 | None:intergenic |
| ACATCATTCTTCTTCTGACA+TGG | 0.555858 | 4_1:+74636287 | Msa0571880:CDS |
| AGCACTATTGTAATCAAATG+AGG | 0.555931 | 4_1:+74634700 | Msa0571880:CDS |
| ACAAAGAAACACGACAACCT+CGG | 0.564649 | 4_1:+74636023 | Msa0571880:CDS |
| CACATTCCGAATCGATTCGA+AGG | 0.565105 | 4_1:-74636140 | None:intergenic |
| AGAGTCCAATGTTCTATACA+AGG | 0.568503 | 4_1:+74636433 | Msa0571880:CDS |
| GGTCTTTCATTACCTTCACA+AGG | 0.569310 | 4_1:-74633919 | None:intergenic |
| ATTTCAACAAATCAACATGA+TGG | 0.573334 | 4_1:+74634956 | Msa0571880:CDS |
| TGTTGCACCTGGAACAACAA+AGG | 0.574394 | 4_1:+74634881 | Msa0571880:CDS |
| ATCTCAAACTCAACCTCATG+AGG | 0.577882 | 4_1:+74636101 | Msa0571880:CDS |
| ATGCCATACAGGAATCTCAT+GGG | 0.578629 | 4_1:+74636513 | Msa0571880:CDS |
| GAAGATGAGATAGCTAGAGA+GGG | 0.581581 | 4_1:-74633326 | None:intergenic |
| TGGTCCCTTGTATAGAACAT+TGG | 0.582832 | 4_1:-74636438 | None:intergenic |
| GTTTAATCTCACTACAGGGA+TGG | 0.583583 | 4_1:+74633588 | Msa0571880:CDS |
| AGAAACACGACAACCTCGGA+CGG | 0.587887 | 4_1:+74636027 | Msa0571880:CDS |
| GAAGATGACAAAACATCAAG+TGG | 0.589082 | 4_1:+74633502 | Msa0571880:CDS |
| GCTCCTTTCCATGCTAGAAG+AGG | 0.590546 | 4_1:+74634290 | Msa0571880:CDS |
| AACATTGGACTCTGTGATGT+TGG | 0.591723 | 4_1:-74636423 | None:intergenic |
| AAACTAAGTCAACAACATGT+TGG | 0.592199 | 4_1:+74633697 | Msa0571880:CDS |
| ACGATTCAAACACAAATCCA+AGG | 0.592839 | 4_1:+74633544 | Msa0571880:CDS |
| AATATTGTTTCCTCCGTCCG+AGG | 0.597602 | 4_1:-74636040 | None:intergenic |
| ATCATCATTTACAAGATCAA+GGG | 0.598993 | 4_1:+74634025 | Msa0571880:CDS |
| ATTGTAAACCAATAGAGGAA+GGG | 0.599402 | 4_1:-74633978 | None:intergenic |
| ATACCTCTTCTAGCATGGAA+AGG | 0.599613 | 4_1:-74634293 | None:intergenic |
| TTGTTGTTCCAGGTGCAACA+GGG | 0.600884 | 4_1:-74634878 | None:intergenic |
| GAATTAATTTATATTATGAG+GGG | 0.604772 | 4_1:-74633401 | None:intergenic |
| GAGAGTGAAAGTCCTTGACT+TGG | 0.606569 | 4_1:-74633940 | None:intergenic |
| GTCCCCATGAGATTCCTGTA+TGG | 0.609295 | 4_1:-74636516 | None:intergenic |
| ATTCATCATCTTCACATCAG+TGG | 0.610423 | 4_1:+74633860 | Msa0571880:CDS |
| GAATCGATTCGAAGGAGTCG+TGG | 0.616503 | 4_1:-74636132 | None:intergenic |
| GTCTTTCATTACCTTCACAA+GGG | 0.619695 | 4_1:-74633918 | None:intergenic |
| ACACAACAAACTCTGTCATG+TGG | 0.622405 | 4_1:+74633656 | Msa0571880:CDS |
| AGACCACGTTGAGGTCTCCA+AGG | 0.624695 | 4_1:-74634987 | None:intergenic |
| TATGCCATACAGGAATCTCA+TGG | 0.626506 | 4_1:+74636512 | Msa0571880:CDS |
| TGATCAGAATCTAAACTACA+TGG | 0.627178 | 4_1:+74633810 | Msa0571880:CDS |
| CAACAAAGGGTGAAACACCT+AGG | 0.627180 | 4_1:+74634895 | Msa0571880:CDS |
| ATTGGACTCTGTGATGTTGG+TGG | 0.631848 | 4_1:-74636420 | None:intergenic |
| GATGACAAAACATCAAGTGG+TGG | 0.632307 | 4_1:+74633505 | Msa0571880:CDS |
| GAGACTATGGAAGCCAATGG+TGG | 0.635999 | 4_1:+74635969 | Msa0571880:CDS |
| TTGTAATCAAATGAGGAGTG+TGG | 0.639918 | 4_1:+74634707 | Msa0571880:CDS |
| TTGGACTCTGTGATGTTGGT+GGG | 0.640625 | 4_1:-74636419 | None:intergenic |
| AACCGATCCAAACGCATCCG+CGG | 0.640907 | 4_1:-74636238 | None:intergenic |
| TGGGAAGATGATAACAACAA+TGG | 0.648007 | 4_1:+74634195 | Msa0571880:CDS |
| AGTGAGACTATGGAAGCCAA+TGG | 0.648201 | 4_1:+74635966 | Msa0571880:CDS |
| GAGTCCAATGTTCTATACAA+GGG | 0.649085 | 4_1:+74636434 | Msa0571880:CDS |
| GGTAATGAAAGACCAAGTCA+AGG | 0.652296 | 4_1:+74633928 | Msa0571880:CDS |
| ATGGTTGCTGCTTACACAAG+TGG | 0.652558 | 4_1:+74636306 | Msa0571880:CDS |
| GAAGATGATAACAACAATGG+TGG | 0.654808 | 4_1:+74634198 | Msa0571880:CDS |
| GGAGCATGAAAAGCATAGTG+TGG | 0.654941 | 4_1:-74633380 | None:intergenic |
| GATTCATCACCAATTAGCCG+CGG | 0.664278 | 4_1:+74636221 | Msa0571880:CDS |
| ACGTTAGGGTTACAACAACA+TGG | 0.673570 | 4_1:+74636372 | Msa0571880:CDS |
| TGCCATACAGGAATCTCATG+GGG | 0.679427 | 4_1:+74636514 | Msa0571880:CDS |
| GGTGAGAGTTTCCACCAAGG+TGG | 0.686723 | 4_1:+74636327 | Msa0571880:CDS |
| AGATGTTTAATCTCACTACA+GGG | 0.700473 | 4_1:+74633584 | Msa0571880:CDS |
| CAATTCAACAAACTCTACAG+AGG | 0.717090 | 4_1:-74634250 | None:intergenic |
| CATCCTTGGAGACCTCAACG+TGG | 0.740668 | 4_1:+74634984 | Msa0571880:CDS |
| CGTTCAGGAAGACCACGTTG+AGG | 0.743992 | 4_1:-74634996 | None:intergenic |
| AGTGGTGAGAGTTTCCACCA+AGG | 0.759976 | 4_1:+74636324 | Msa0571880:CDS |
| GAGAGTATATGATAGCATGG+AGG | 0.763200 | 4_1:+74633291 | Msa0571880:five_prime_UTR |
| TTAGGGTTACAACAACATGG+TGG | 0.784784 | 4_1:+74636375 | Msa0571880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATTAATTTATATTATGA+GGG | - | chr4_1:74633405-74633424 | None:intergenic | 10.0% |
| !!! | TTTTGTGTATAATAATATTT+AGG | + | chr4_1:74634662-74634681 | Msa0571880:intron | 10.0% |
| !! | GAATTAATTTATATTATGAG+GGG | - | chr4_1:74633404-74633423 | None:intergenic | 15.0% |
| !! | GTGAATTAATTTATATTATG+AGG | - | chr4_1:74633406-74633425 | None:intergenic | 15.0% |
| !!! | AGTTTGAAATTTTTTATTCA+TGG | + | chr4_1:74633462-74633481 | Msa0571880:exon | 15.0% |
| !! | TTATGACTTGAAATAAATTA+AGG | - | chr4_1:74634396-74634415 | None:intergenic | 15.0% |
| !! | ATGAAGAAAAAAAAGAATTA+CGG | - | chr4_1:74635068-74635087 | None:intergenic | 15.0% |
| !!! | TACTTCTTTTTATTTTTATG+TGG | + | chr4_1:74635446-74635465 | Msa0571880:intron | 15.0% |
| !! | ATTAAATAGTCATATATAGA+TGG | + | chr4_1:74635750-74635769 | Msa0571880:intron | 15.0% |
| !! | TTATTAATTAATTGAAAAGC+AGG | + | chr4_1:74635918-74635937 | Msa0571880:intron | 15.0% |
| !! | TTGGTTGTATTTATAAATCT+TGG | + | chr4_1:74633212-74633231 | Msa0571880:five_prime_UTR | 20.0% |
| !!! | ATGATAGAAATTTTCATTCA+TGG | - | chr4_1:74633743-74633762 | None:intergenic | 20.0% |
| !! | TTAAAAAGTTTCAATTGTCA+CGG | - | chr4_1:74634533-74634552 | None:intergenic | 20.0% |
| !!! | TGAAAACTAACAGTTTTTAT+TGG | - | chr4_1:74634578-74634597 | None:intergenic | 20.0% |
| !!! | AGTTTTCATCTTTATTTCTA+TGG | + | chr4_1:74634590-74634609 | Msa0571880:intron | 20.0% |
| !!! | ATAATATTTAGGTTGATAGA+AGG | + | chr4_1:74634673-74634692 | Msa0571880:intron | 20.0% |
| !! | TTCTAATTCTATTAGAAGTA+AGG | + | chr4_1:74635135-74635154 | Msa0571880:CDS | 20.0% |
| !!! | CAATAGCTGTTTTTATTTTT+TGG | - | chr4_1:74635202-74635221 | None:intergenic | 20.0% |
| !! | CAAAAAATAAAAACAGCTAT+TGG | + | chr4_1:74635200-74635219 | Msa0571880:intron | 20.0% |
| !! | TACAAAGGAAGAATTATTTA+AGG | - | chr4_1:74635472-74635491 | None:intergenic | 20.0% |
| !! | TTAAATAATTCTTCCTTTGT+AGG | + | chr4_1:74635471-74635490 | Msa0571880:intron | 20.0% |
| !! | TAAATAATTCTTCCTTTGTA+GGG | + | chr4_1:74635472-74635491 | Msa0571880:intron | 20.0% |
| !! | ATTAATATATTTCCCTTCAT+TGG | + | chr4_1:74635701-74635720 | Msa0571880:intron | 20.0% |
| !! | AACAATCATGATCATAAAAA+TGG | + | chr4_1:74636180-74636199 | Msa0571880:CDS | 20.0% |
| ! | AAAAGATTGTAAACCAATAG+AGG | - | chr4_1:74633986-74634005 | None:intergenic | 25.0% |
| ! | AATCATCATTTACAAGATCA+AGG | + | chr4_1:74634024-74634043 | Msa0571880:CDS | 25.0% |
| ! | ATCATCATTTACAAGATCAA+GGG | + | chr4_1:74634025-74634044 | Msa0571880:CDS | 25.0% |
| !! | AATCAAAGACTCTTAACTTT+TGG | + | chr4_1:74634414-74634433 | Msa0571880:intron | 25.0% |
| ! | TAAAAAGTTTCAATTGTCAC+GGG | - | chr4_1:74634532-74634551 | None:intergenic | 25.0% |
| ! | TATTGGTAAGAAAAGGAAAA+AGG | - | chr4_1:74634561-74634580 | None:intergenic | 25.0% |
| !! | CAGTTTTTATTGGTAAGAAA+AGG | - | chr4_1:74634568-74634587 | None:intergenic | 25.0% |
| !!! | TTTCATCTTTATTTCTATGG+TGG | + | chr4_1:74634593-74634612 | Msa0571880:intron | 25.0% |
| ! | ATTTCAACAAATCAACATGA+TGG | + | chr4_1:74634956-74634975 | Msa0571880:CDS | 25.0% |
| !!! | GCTGTTTTTATTTTTTGGAA+TGG | - | chr4_1:74635197-74635216 | None:intergenic | 25.0% |
| ! | ACAACATACATATGAAAAGA+TGG | - | chr4_1:74635357-74635376 | None:intergenic | 25.0% |
| ! | AATATATATATGACCTTGTG+TGG | - | chr4_1:74635561-74635580 | None:intergenic | 25.0% |
| ! | TAATAAAAAATCAACATGCC+TGG | - | chr4_1:74635680-74635699 | None:intergenic | 25.0% |
| !!! | AATATCAAATTTTAGGGTGA+CGG | - | chr4_1:74635787-74635806 | None:intergenic | 25.0% |
| !!! | ATTGGTTTTGAAGTACATTA+AGG | - | chr4_1:74636083-74636102 | None:intergenic | 25.0% |
| ! | AAAGAGAGTATATGATAGCA+TGG | + | chr4_1:74633288-74633307 | Msa0571880:five_prime_UTR | 30.0% |
| AGATGTTTAATCTCACTACA+GGG | + | chr4_1:74633584-74633603 | Msa0571880:CDS | 30.0% | |
| ! | ATGTTGTTGTTGATGTTGTT+TGG | - | chr4_1:74633629-74633648 | None:intergenic | 30.0% |
| ATGTGGAAAACAAATTTCTC+AGG | + | chr4_1:74633673-74633692 | Msa0571880:CDS | 30.0% | |
| AAACTAAGTCAACAACATGT+TGG | + | chr4_1:74633697-74633716 | Msa0571880:CDS | 30.0% | |
| !! | ATGGTTTTTGAAGAAGAAGA+GGG | - | chr4_1:74633724-74633743 | None:intergenic | 30.0% |
| TGAAATCTTGATGTTGTTGT+TGG | - | chr4_1:74633768-74633787 | None:intergenic | 30.0% | |
| TGATCAGAATCTAAACTACA+TGG | + | chr4_1:74633810-74633829 | Msa0571880:CDS | 30.0% | |
| ATTGTAAACCAATAGAGGAA+GGG | - | chr4_1:74633981-74634000 | None:intergenic | 30.0% | |
| ATAATATACCTCTTCTAGCA+TGG | - | chr4_1:74634301-74634320 | None:intergenic | 30.0% | |
| ! | ATGAGATTGGTGTCTTAATT+TGG | + | chr4_1:74634449-74634468 | Msa0571880:intron | 30.0% |
| AAAAAGTTTCAATTGTCACG+GGG | - | chr4_1:74634531-74634550 | None:intergenic | 30.0% | |
| AGCACTATTGTAATCAAATG+AGG | + | chr4_1:74634700-74634719 | Msa0571880:CDS | 30.0% | |
| ! | AAGCTATGTCAAGACATTTT+AGG | + | chr4_1:74634793-74634812 | Msa0571880:CDS | 30.0% |
| !! | CATTTTAGGTGTTTGAAAGA+TGG | + | chr4_1:74634807-74634826 | Msa0571880:CDS | 30.0% |
| TCAAACAACAAGAAAAGCAA+TGG | + | chr4_1:74634845-74634864 | Msa0571880:CDS | 30.0% | |
| CAAACAACAAGAAAAGCAAT+GGG | + | chr4_1:74634846-74634865 | Msa0571880:CDS | 30.0% | |
| !! | CTATCAAGTATTTTAAGCCT+AGG | - | chr4_1:74634915-74634934 | None:intergenic | 30.0% |
| GAAACTAACAAAAAATGCGT+AGG | - | chr4_1:74635314-74635333 | None:intergenic | 30.0% | |
| ATGAAAAGATGGAATCTGAA+TGG | - | chr4_1:74635346-74635365 | None:intergenic | 30.0% | |
| !! | AAAGAGTTTTGTCCAATGAA+GGG | - | chr4_1:74635716-74635735 | None:intergenic | 30.0% |
| !!! | CGCAACTTTGAAAGTTTTTT+TGG | + | chr4_1:74635878-74635897 | Msa0571880:intron | 30.0% |
| TTGAAAAGCAGGTATCAAAT+TGG | + | chr4_1:74635929-74635948 | Msa0571880:intron | 30.0% | |
| AAATACATTTCTTCCACCAT+TGG | - | chr4_1:74635985-74636004 | None:intergenic | 30.0% | |
| ! | AATGGTGGAAGAAATGTATT+TGG | + | chr4_1:74635984-74636003 | Msa0571880:CDS | 30.0% |
| !! | ATGATTGTTGTTGATGATAG+AGG | - | chr4_1:74636169-74636188 | None:intergenic | 30.0% |
| GAACAAATATTATGCCATAC+AGG | + | chr4_1:74636502-74636521 | Msa0571880:CDS | 30.0% | |
| CTTAACAAGTGATGAGTCAA+TGG | - | chr4_1:74633239-74633258 | None:intergenic | 35.0% | |
| GAAGATGACAAAACATCAAG+TGG | + | chr4_1:74633502-74633521 | Msa0571880:CDS | 35.0% | |
| TGGATTTGTGTTTGAATCGT+TGG | - | chr4_1:74633544-74633563 | None:intergenic | 35.0% | |
| ACGATTCAAACACAAATCCA+AGG | + | chr4_1:74633544-74633563 | Msa0571880:CDS | 35.0% | |
| !! | ACAAATCCAAGGTTTTGTGT+CGG | + | chr4_1:74633555-74633574 | Msa0571880:CDS | 35.0% |
| GTAGTGAGATTAAACATCTC+TGG | - | chr4_1:74633583-74633602 | None:intergenic | 35.0% | |
| GAGATGTTTAATCTCACTAC+AGG | + | chr4_1:74633583-74633602 | Msa0571880:CDS | 35.0% | |
| !! | CATGGTTTTTGAAGAAGAAG+AGG | - | chr4_1:74633725-74633744 | None:intergenic | 35.0% |
| ATTCATCATCTTCACATCAG+TGG | + | chr4_1:74633860-74633879 | Msa0571880:CDS | 35.0% | |
| GTCTTTCATTACCTTCACAA+GGG | - | chr4_1:74633921-74633940 | None:intergenic | 35.0% | |
| GATTGTAAACCAATAGAGGA+AGG | - | chr4_1:74633982-74634001 | None:intergenic | 35.0% | |
| !! | TTACAAGATCAAGGGTATCA+AGG | + | chr4_1:74634033-74634052 | Msa0571880:CDS | 35.0% |
| AGTTCAACAACAAGCAAAGT+TGG | + | chr4_1:74634175-74634194 | Msa0571880:CDS | 35.0% | |
| GTTCAACAACAAGCAAAGTT+GGG | + | chr4_1:74634176-74634195 | Msa0571880:CDS | 35.0% | |
| TGGGAAGATGATAACAACAA+TGG | + | chr4_1:74634195-74634214 | Msa0571880:CDS | 35.0% | |
| GAAGATGATAACAACAATGG+TGG | + | chr4_1:74634198-74634217 | Msa0571880:CDS | 35.0% | |
| CAATTCAACAAACTCTACAG+AGG | - | chr4_1:74634253-74634272 | None:intergenic | 35.0% | |
| !! | GTTGAAGTAGTTGATGAGAT+TGG | + | chr4_1:74634436-74634455 | Msa0571880:intron | 35.0% |
| TTGTAATCAAATGAGGAGTG+TGG | + | chr4_1:74634707-74634726 | Msa0571880:CDS | 35.0% | |
| TGCGAAAGTTTATTCAGCTT+TGG | + | chr4_1:74634764-74634783 | Msa0571880:CDS | 35.0% | |
| AGAATTGAAACAGAACGTTC+AGG | - | chr4_1:74635014-74635033 | None:intergenic | 35.0% | |
| AACGTTCTGTTTCAATTCTC+AGG | + | chr4_1:74635015-74635034 | Msa0571880:CDS | 35.0% | |
| ACGTTCTGTTTCAATTCTCA+GGG | + | chr4_1:74635016-74635035 | Msa0571880:CDS | 35.0% | |
| AAGAAGAAATGACCCTACAA+AGG | - | chr4_1:74635487-74635506 | None:intergenic | 35.0% | |
| !! | CGACGTTGATAAGCATATTT+TGG | + | chr4_1:74635629-74635648 | Msa0571880:intron | 35.0% |
| !! | GAAAGAGTTTTGTCCAATGA+AGG | - | chr4_1:74635717-74635736 | None:intergenic | 35.0% |
| TTAATGCAAGAGTGAGACTA+TGG | + | chr4_1:74635956-74635975 | Msa0571880:CDS | 35.0% | |
| ACATCATTCTTCTTCTGACA+TGG | + | chr4_1:74636287-74636306 | Msa0571880:CDS | 35.0% | |
| ! | TTACAACAACATGGTGGAAA+TGG | + | chr4_1:74636381-74636400 | Msa0571880:CDS | 35.0% |
| AGAGTCCAATGTTCTATACA+AGG | + | chr4_1:74636433-74636452 | Msa0571880:CDS | 35.0% | |
| GAGTCCAATGTTCTATACAA+GGG | + | chr4_1:74636434-74636453 | Msa0571880:CDS | 35.0% | |
| ! | GAGAGTATATGATAGCATGG+AGG | + | chr4_1:74633291-74633310 | Msa0571880:five_prime_UTR | 40.0% |
| GAAGATGAGATAGCTAGAGA+GGG | - | chr4_1:74633329-74633348 | None:intergenic | 40.0% | |
| AGAAGATGAGATAGCTAGAG+AGG | - | chr4_1:74633330-74633349 | None:intergenic | 40.0% | |
| GATGACAAAACATCAAGTGG+TGG | + | chr4_1:74633505-74633524 | Msa0571880:CDS | 40.0% | |
| GTTTAATCTCACTACAGGGA+TGG | + | chr4_1:74633588-74633607 | Msa0571880:CDS | 40.0% | |
| ACACAACAAACTCTGTCATG+TGG | + | chr4_1:74633656-74633675 | Msa0571880:CDS | 40.0% | |
| ! | AGATGTGTTTTCCCTTGTGA+AGG | + | chr4_1:74633907-74633926 | Msa0571880:CDS | 40.0% |
| GGTCTTTCATTACCTTCACA+AGG | - | chr4_1:74633922-74633941 | None:intergenic | 40.0% | |
| GGTAATGAAAGACCAAGTCA+AGG | + | chr4_1:74633928-74633947 | Msa0571880:CDS | 40.0% | |
| TCAACAAACCCTTCCTCTAT+TGG | + | chr4_1:74633970-74633989 | Msa0571880:CDS | 40.0% | |
| TCATTGAGAAGTTCTTGTGC+TGG | - | chr4_1:74634093-74634112 | None:intergenic | 40.0% | |
| ATACCTCTTCTAGCATGGAA+AGG | - | chr4_1:74634296-74634315 | None:intergenic | 40.0% | |
| ! | TCATCATTTGAAGCTGTAGC+TGG | + | chr4_1:74634732-74634751 | Msa0571880:CDS | 40.0% |
| ! | TTTGAAGCTGTAGCTGGAAA+TGG | + | chr4_1:74634738-74634757 | Msa0571880:CDS | 40.0% |
| ! | ACATGATGGAAACACATCCT+TGG | + | chr4_1:74634970-74634989 | Msa0571880:CDS | 40.0% |
| AGCTATTGGCAGTTGTGTTA+TGG | + | chr4_1:74635214-74635233 | Msa0571880:intron | 40.0% | |
| TAATTCATACGTGCCACACA+AGG | + | chr4_1:74635545-74635564 | Msa0571880:intron | 40.0% | |
| TATGCTTATCAACGTCGCTT+GGG | - | chr4_1:74635626-74635645 | None:intergenic | 40.0% | |
| ATATGCTTATCAACGTCGCT+TGG | - | chr4_1:74635627-74635646 | None:intergenic | 40.0% | |
| ACAAAGAAACACGACAACCT+CGG | + | chr4_1:74636023-74636042 | Msa0571880:CDS | 40.0% | |
| ! | CATGAGGTTGAGTTTGAGAT+TGG | - | chr4_1:74636101-74636120 | None:intergenic | 40.0% |
| ATCTCAAACTCAACCTCATG+AGG | + | chr4_1:74636101-74636120 | Msa0571880:CDS | 40.0% | |
| ACGTTAGGGTTACAACAACA+TGG | + | chr4_1:74636372-74636391 | Msa0571880:CDS | 40.0% | |
| TTAGGGTTACAACAACATGG+TGG | + | chr4_1:74636375-74636394 | Msa0571880:CDS | 40.0% | |
| AACATTGGACTCTGTGATGT+TGG | - | chr4_1:74636426-74636445 | None:intergenic | 40.0% | |
| TGGTCCCTTGTATAGAACAT+TGG | - | chr4_1:74636441-74636460 | None:intergenic | 40.0% | |
| AAGGGACCAAATTGAAGAAC+CGG | + | chr4_1:74636452-74636471 | Msa0571880:CDS | 40.0% | |
| ! | ACTGAACCGGTTCTTCAATT+TGG | - | chr4_1:74636461-74636480 | None:intergenic | 40.0% |
| !! | TCCAAAAGAGAGTACTGAAC+CGG | - | chr4_1:74636474-74636493 | None:intergenic | 40.0% |
| ! | GTTCAGTACTCTCTTTTGGA+TGG | + | chr4_1:74636474-74636493 | Msa0571880:CDS | 40.0% |
| ! | TACTCTCTTTTGGATGGTGA+AGG | + | chr4_1:74636480-74636499 | Msa0571880:CDS | 40.0% |
| TATGCCATACAGGAATCTCA+TGG | + | chr4_1:74636512-74636531 | Msa0571880:CDS | 40.0% | |
| ATGCCATACAGGAATCTCAT+GGG | + | chr4_1:74636513-74636532 | Msa0571880:CDS | 40.0% | |
| GACACAATTGCTACATGACT+TGG | + | chr4_1:74636536-74636555 | Msa0571880:CDS | 40.0% | |
| ! | GGAGCATGAAAAGCATAGTG+TGG | - | chr4_1:74633383-74633402 | None:intergenic | 45.0% |
| ACTACAGGGATGGAGATGAT+AGG | + | chr4_1:74633598-74633617 | Msa0571880:CDS | 45.0% | |
| GAGAGTGAAAGTCCTTGACT+TGG | - | chr4_1:74633943-74633962 | None:intergenic | 45.0% | |
| TTTCAATTGTCACGGGGTGA+AGG | - | chr4_1:74634525-74634544 | None:intergenic | 45.0% | |
| ! | TTGTTGTTCCAGGTGCAACA+GGG | - | chr4_1:74634881-74634900 | None:intergenic | 45.0% |
| !! | TTTGTTGTTCCAGGTGCAAC+AGG | - | chr4_1:74634882-74634901 | None:intergenic | 45.0% |
| TGTTGCACCTGGAACAACAA+AGG | + | chr4_1:74634881-74634900 | Msa0571880:CDS | 45.0% | |
| GTTGCACCTGGAACAACAAA+GGG | + | chr4_1:74634882-74634901 | Msa0571880:CDS | 45.0% | |
| !! | GTTTCACCCTTTGTTGTTCC+AGG | - | chr4_1:74634891-74634910 | None:intergenic | 45.0% |
| CAACAAAGGGTGAAACACCT+AGG | + | chr4_1:74634895-74634914 | Msa0571880:CDS | 45.0% | |
| CTGTTTCAATTCTCAGGGCT+TGG | + | chr4_1:74635021-74635040 | Msa0571880:CDS | 45.0% | |
| AGTGAGACTATGGAAGCCAA+TGG | + | chr4_1:74635966-74635985 | Msa0571880:CDS | 45.0% | |
| AATATTGTTTCCTCCGTCCG+AGG | - | chr4_1:74636043-74636062 | None:intergenic | 45.0% | |
| ACGACTCCTTCGAATCGATT+CGG | + | chr4_1:74636134-74636153 | Msa0571880:CDS | 45.0% | |
| !! | CACATTCCGAATCGATTCGA+AGG | - | chr4_1:74636143-74636162 | None:intergenic | 45.0% |
| GATTCATCACCAATTAGCCG+CGG | + | chr4_1:74636221-74636240 | Msa0571880:CDS | 45.0% | |
| ! | ATGGTTGCTGCTTACACAAG+TGG | + | chr4_1:74636306-74636325 | Msa0571880:CDS | 45.0% |
| ! | GTGGAGTGTCATTGACGTTA+GGG | + | chr4_1:74636358-74636377 | Msa0571880:CDS | 45.0% |
| TGGTGGAAATGGAGTGAGTT+TGG | + | chr4_1:74636392-74636411 | Msa0571880:CDS | 45.0% | |
| TTGGACTCTGTGATGTTGGT+GGG | - | chr4_1:74636422-74636441 | None:intergenic | 45.0% | |
| ATTGGACTCTGTGATGTTGG+TGG | - | chr4_1:74636423-74636442 | None:intergenic | 45.0% | |
| !! | ACCGGTTCAGTACTCTCTTT+TGG | + | chr4_1:74636470-74636489 | Msa0571880:CDS | 45.0% |
| TGCCATACAGGAATCTCATG+GGG | + | chr4_1:74636514-74636533 | Msa0571880:CDS | 45.0% | |
| !!! | TTTTTTTGTATAATTTTTAT+AGG | + | chr4_1:74635598-74635617 | Msa0571880:intron | 5.0% |
| !!! | AATATTAATATCAAATTTTA+GGG | - | chr4_1:74635793-74635812 | None:intergenic | 5.0% |
| !!! | AAATATTAATATCAAATTTT+AGG | - | chr4_1:74635794-74635813 | None:intergenic | 5.0% |
| !!! | ATTATTGTAAATTTTTTAAT+TGG | + | chr4_1:74635851-74635870 | Msa0571880:intron | 5.0% |
| CTGGATCCGACACAAAACCT+TGG | - | chr4_1:74633564-74633583 | None:intergenic | 50.0% | |
| GCTCCTTTCCATGCTAGAAG+AGG | + | chr4_1:74634290-74634309 | Msa0571880:CDS | 50.0% | |
| GAAAAAGACCCTGTTGCACC+TGG | + | chr4_1:74634870-74634889 | Msa0571880:CDS | 50.0% | |
| !!! | CATATTTTGGCCCGCCAAAC+CGG | + | chr4_1:74635642-74635661 | Msa0571880:intron | 50.0% |
| !! | TTCTTGAGAGACCGGTTTGG+CGG | - | chr4_1:74635656-74635675 | None:intergenic | 50.0% |
| GAGACTATGGAAGCCAATGG+TGG | + | chr4_1:74635969-74635988 | Msa0571880:CDS | 50.0% | |
| AGAAACACGACAACCTCGGA+CGG | + | chr4_1:74636027-74636046 | Msa0571880:CDS | 50.0% | |
| ! | CGTGGCTTTTGATCCTCATG+AGG | - | chr4_1:74636117-74636136 | None:intergenic | 50.0% |
| !! | GAATCGATTCGAAGGAGTCG+TGG | - | chr4_1:74636135-74636154 | None:intergenic | 50.0% |
| AGTGGTGAGAGTTTCCACCA+AGG | + | chr4_1:74636324-74636343 | Msa0571880:CDS | 50.0% | |
| ! | GGTGGAGTGTCATTGACGTT+AGG | + | chr4_1:74636357-74636376 | Msa0571880:CDS | 50.0% |
| GTCCCCATGAGATTCCTGTA+TGG | - | chr4_1:74636519-74636538 | None:intergenic | 50.0% | |
| CATCCTTGGAGACCTCAACG+TGG | + | chr4_1:74634984-74635003 | Msa0571880:CDS | 55.0% | |
| AGACCACGTTGAGGTCTCCA+AGG | - | chr4_1:74634990-74635009 | None:intergenic | 55.0% | |
| CGTTCAGGAAGACCACGTTG+AGG | - | chr4_1:74634999-74635018 | None:intergenic | 55.0% | |
| !! | TCTTGAGAGACCGGTTTGGC+GGG | - | chr4_1:74635655-74635674 | None:intergenic | 55.0% |
| GGCTTCTTGAGAGACCGGTT+TGG | - | chr4_1:74635659-74635678 | None:intergenic | 55.0% | |
| AACCGGTCTCTCAAGAAGCC+AGG | + | chr4_1:74635659-74635678 | Msa0571880:intron | 55.0% | |
| TGCCTGGCTTCTTGAGAGAC+CGG | - | chr4_1:74635664-74635683 | None:intergenic | 55.0% | |
| CAAACGCATCCGCGGCTAAT+TGG | - | chr4_1:74636233-74636252 | None:intergenic | 55.0% | |
| CAATTAGCCGCGGATGCGTT+TGG | + | chr4_1:74636231-74636250 | Msa0571880:CDS | 55.0% | |
| AACCGATCCAAACGCATCCG+CGG | - | chr4_1:74636241-74636260 | None:intergenic | 55.0% | |
| GGTGAGAGTTTCCACCAAGG+TGG | + | chr4_1:74636327-74636346 | Msa0571880:CDS | 55.0% | |
| AACACGACAACCTCGGACGG+AGG | + | chr4_1:74636030-74636049 | Msa0571880:CDS | 60.0% | |
| AGCCGCGGATGCGTTTGGAT+CGG | + | chr4_1:74636236-74636255 | Msa0571880:CDS | 60.0% | |
| TTCCACCAAGGTGGCAGCAG+TGG | + | chr4_1:74636336-74636355 | Msa0571880:CDS | 60.0% | |
| CACCACTGCTGCCACCTTGG+TGG | - | chr4_1:74636341-74636360 | None:intergenic | 65.0% | |
| CACCAAGGTGGCAGCAGTGG+TGG | + | chr4_1:74636339-74636358 | Msa0571880:CDS | 65.0% | |
| CTCCACCACTGCTGCCACCT+TGG | - | chr4_1:74636344-74636363 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 74633208 | 74636563 | 74633208 | ID=Msa0571880;Name=Msa0571880 |
| chr4_1 | mRNA | 74633208 | 74636563 | 74633208 | ID=Msa0571880-mRNA-1;Parent=Msa0571880;Name=Msa0571880-mRNA-1;_AED=0.17;_eAED=0.17;_QI=273|0.33|0.5|1|1|1|4|0|620 |
| chr4_1 | exon | 74633208 | 74634311 | 74633208 | ID=Msa0571880-mRNA-1:exon:25806;Parent=Msa0571880-mRNA-1 |
| chr4_1 | exon | 74634684 | 74635066 | 74634684 | ID=Msa0571880-mRNA-1:exon:25807;Parent=Msa0571880-mRNA-1 |
| chr4_1 | exon | 74635132 | 74635156 | 74635132 | ID=Msa0571880-mRNA-1:exon:25808;Parent=Msa0571880-mRNA-1 |
| chr4_1 | exon | 74635940 | 74636563 | 74635940 | ID=Msa0571880-mRNA-1:exon:25809;Parent=Msa0571880-mRNA-1 |
| chr4_1 | five_prime_UTR | 74633208 | 74633480 | 74633208 | ID=Msa0571880-mRNA-1:five_prime_utr;Parent=Msa0571880-mRNA-1 |
| chr4_1 | CDS | 74633481 | 74634311 | 74633481 | ID=Msa0571880-mRNA-1:cds;Parent=Msa0571880-mRNA-1 |
| chr4_1 | CDS | 74634684 | 74635066 | 74634684 | ID=Msa0571880-mRNA-1:cds;Parent=Msa0571880-mRNA-1 |
| chr4_1 | CDS | 74635132 | 74635156 | 74635132 | ID=Msa0571880-mRNA-1:cds;Parent=Msa0571880-mRNA-1 |
| chr4_1 | CDS | 74635940 | 74636563 | 74635940 | ID=Msa0571880-mRNA-1:cds;Parent=Msa0571880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
