AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0646180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646180 MtrunA17_Chr4g0034251 100.000 166 0 0 1 166 1 166 2.30e-116 326
Msa0646180 MtrunA17_Chr8g0373951 59.868 152 61 0 15 166 1 152 4.06e-57 176
Msa0646180 MtrunA17_Chr5g0403141 63.816 152 55 0 15 166 2 153 1.10e-55 172
Msa0646180 MtrunA17_Chr1g0186551 41.722 151 88 0 15 165 1 151 1.01e-31 111
Msa0646180 MtrunA17_Chr1g0186591 44.000 150 82 2 15 163 1 149 2.67e-31 110
Msa0646180 MtrunA17_Chr4g0009521 41.558 154 88 1 15 166 2 155 5.46e-30 107
Msa0646180 MtrunA17_Chr4g0028981 36.424 151 95 1 15 165 35 184 3.66e-24 92.8
Msa0646180 MtrunA17_Chr1g0167831 37.594 133 83 0 15 147 1 133 2.20e-15 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646180 AT3G50810.3 52.632 152 72 0 15 166 1 152 4.34e-50 158
Msa0646180 AT3G50810.2 52.632 152 72 0 15 166 1 152 4.34e-50 158
Msa0646180 AT3G50810.1 52.632 152 72 0 15 166 1 152 4.34e-50 158
Msa0646180 AT4G37235.1 57.792 154 58 2 15 166 1 149 2.07e-49 156
Msa0646180 AT1G49405.1 57.576 132 55 1 15 146 1 131 5.73e-40 132
Msa0646180 AT3G23200.1 40.397 151 90 0 15 165 1 151 1.25e-31 111
Msa0646180 AT3G53850.1 37.419 155 93 2 15 166 1 154 2.38e-26 98.2
Msa0646180 AT3G53850.2 37.419 155 93 2 15 166 1 154 2.38e-26 98.2
Msa0646180 AT5G02060.1 42.105 152 84 2 15 163 1 151 4.59e-26 97.4
Msa0646180 AT2G28370.1 39.623 159 94 2 7 165 22 178 1.32e-24 94.4
Msa0646180 AT2G37200.1 36.242 149 93 2 15 163 31 177 1.38e-19 81.3
Msa0646180 AT2G37200.2 36.242 149 93 2 15 163 60 206 2.93e-19 81.3
Msa0646180 AT3G23200.2 40.187 107 64 0 59 165 18 124 9.15e-18 75.1
Msa0646180 AT3G53850.3 34.783 138 81 3 37 166 5 141 2.90e-16 71.6

Find 112 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGCTCACAATATGTATT+TGG 0.117469 4_3:-51730402 Msa0646180:three_prime_UTR
TTCCCTTCTCTTTATGTCTT+TGG 0.136583 4_3:-51732224 Msa0646180:CDS
TCTACAGCTACACAGCTTTC+TGG 0.190585 4_3:-51732192 Msa0646180:intron
TTATTCATGTCCTAGCTATT+TGG 0.210283 4_3:-51731020 Msa0646180:intron
TCCCTTCTCTTTATGTCTTT+GGG 0.218721 4_3:-51732223 Msa0646180:CDS
TCTTTAATTATGTATGATAA+TGG 0.224272 4_3:+51732562 None:intergenic
CTTTCAGCTGAAGCTTCTTT+TGG 0.249743 4_3:+51732378 None:intergenic
TTCATGTAACTTATTCTATA+AGG 0.251103 4_3:+51732319 None:intergenic
GGAAATTCTGTTTGAATCAT+AGG 0.253973 4_3:-51732452 Msa0646180:five_prime_UTR
TACCTGCAGCAAAGCTTTAT+AGG 0.287744 4_3:+51730623 None:intergenic
TGTGTCATGGTTTCTGTCCT+TGG 0.292773 4_3:-51730576 Msa0646180:CDS
GAAATGCTATTAAATATTAT+AGG 0.297458 4_3:-51732417 Msa0646180:five_prime_UTR
CAACTATCTCATGGAACATT+TGG 0.310372 4_3:+51729707 None:intergenic
CATCCTTGAGGCCGAGGCCT+GGG 0.320849 4_3:+51730003 None:intergenic
CTTTAATTATGTATGATAAT+GGG 0.324399 4_3:+51732563 None:intergenic
AGATATAACTGTCAAGAATA+TGG 0.335129 4_3:+51730126 None:intergenic
TGGCAGCAGCTTTGACTTTG+AGG 0.364974 4_3:+51729335 None:intergenic
AGGCAGCTGCTGCTAGTGTC+AGG 0.369998 4_3:+51730696 None:intergenic
TGATTATTGTTGTTGGAGAT+TGG 0.373331 4_3:-51730895 Msa0646180:CDS
TAGACATGGGAATGAGTAAA+TGG 0.377676 4_3:+51729315 None:intergenic
GATTATTGTTGTTGGAGATT+GGG 0.385112 4_3:-51730894 Msa0646180:intron
TTCACGTTAGCATTGGTAGA+TGG 0.388590 4_3:-51730965 Msa0646180:CDS
TTTGGTGACAATCATGGGTT+TGG 0.390209 4_3:-51731002 Msa0646180:CDS
TATAGTTATTGAACAATTGA+AGG 0.395906 4_3:-51730175 Msa0646180:three_prime_UTR
AAAGCTCACAATATGTATTT+GGG 0.401334 4_3:-51730401 Msa0646180:three_prime_UTR
ATAATAGAGCGAATACAGTT+TGG 0.411171 4_3:-51730294 Msa0646180:three_prime_UTR
TAGCTATTTGGTGACAATCA+TGG 0.411496 4_3:-51731008 Msa0646180:CDS
ACAATAATCAACAATATTCC+TGG 0.414279 4_3:+51730908 None:intergenic
CTGAAAGAAATAAGCTTGTA+TGG 0.414661 4_3:-51732362 Msa0646180:exon
GCATTGCCTGAGAACTCTCT+TGG 0.415222 4_3:+51730042 None:intergenic
ACAAAGAGGGTAGCAGATAA+AGG 0.415465 4_3:+51730537 None:intergenic
TTCTCTAGGCAATCAACTAA+TGG 0.418900 4_3:+51730207 None:intergenic
AATATTCCTGGTTGACGAAT+GGG 0.419042 4_3:+51730920 None:intergenic
GTAGACTGTAGCTGCACAAT+TGG 0.422673 4_3:+51729959 None:intergenic
ACCTGCAGCAAAGCTTTATA+GGG 0.423414 4_3:+51730624 None:intergenic
AGTTCTGGCTGAATTATCAT+TGG 0.427696 4_3:+51729666 None:intergenic
ATGAAGATCAACCTATGTTA+AGG 0.428204 4_3:-51732473 Msa0646180:five_prime_UTR
AAGATCCTTGCGAATTTAGC+AGG 0.439168 4_3:+51730651 None:intergenic
TCATCCTTGAGGCCGAGGCC+TGG 0.439340 4_3:+51730002 None:intergenic
TAAAGCTTTGCTGCAGGTAC+AGG 0.441403 4_3:-51730619 Msa0646180:CDS
GCACTTGTGCCCACAGAGCC+AGG 0.442656 4_3:+51732289 None:intergenic
TCAATATGTAATCTTCGAGT+TGG 0.449317 4_3:+51730068 None:intergenic
AAGCAGATGAAAACAAGGTT+TGG 0.456691 4_3:+51732245 None:intergenic
GGTAGCGCTAGAGCCGGTTC+AGG 0.463926 4_3:+51729833 None:intergenic
TGTTAGCAATCCCCAGGCCT+CGG 0.465169 4_3:-51730014 Msa0646180:three_prime_UTR
GTACAGGATATCTGCAGTTA+TGG 0.466206 4_3:-51730603 Msa0646180:CDS
AGCTATTTGGTGACAATCAT+GGG 0.471135 4_3:-51731007 Msa0646180:CDS
TAACATATTGAACATGAGTC+TGG 0.478993 4_3:+51729479 None:intergenic
CATTTGACATAGCCATAGCT+TGG 0.481202 4_3:-51729891 Msa0646180:three_prime_UTR
ATCCTTGAGGCCGAGGCCTG+GGG 0.488704 4_3:+51730004 None:intergenic
GCCCTATAAAGCTTTGCTGC+AGG 0.489609 4_3:-51730625 Msa0646180:CDS
ATATTGTTGATTATTGTTGT+TGG 0.494499 4_3:-51730902 Msa0646180:CDS
AAGATGATGAATTAAGTTGA+GGG 0.497335 4_3:+51729730 None:intergenic
ATCCCCAGGCCTCGGCCTCA+AGG 0.498174 4_3:-51730006 Msa0646180:three_prime_UTR
GAAGATGATGAATTAAGTTG+AGG 0.499292 4_3:+51729729 None:intergenic
GCAGCAGTTTGCTCCTGAAC+CGG 0.499441 4_3:-51729846 Msa0646180:three_prime_UTR
AAATGTCATCCTTGAGGCCG+AGG 0.503374 4_3:+51729997 None:intergenic
AAACAGAATTTCCTTAACAT+AGG 0.505920 4_3:+51732462 None:intergenic
AGGAACTCTCTTATATTTAG+CGG 0.509237 4_3:-51732631 None:intergenic
GATTGTTTGCAACTATCTCA+TGG 0.511960 4_3:+51729698 None:intergenic
TCATGGGTTTGGTTATACCT+TGG 0.513400 4_3:-51730991 Msa0646180:CDS
CAATATTCCTGGTTGACGAA+TGG 0.518569 4_3:+51730919 None:intergenic
CTTCGAGTTGGACTGTAAGC+AGG 0.521612 4_3:+51730080 None:intergenic
TGAGAACCATTGTGCAGTCT+TGG 0.527155 4_3:+51729778 None:intergenic
TCTTATATTTAGCGGCGCTA+AGG 0.529664 4_3:-51732623 Msa0646180:five_prime_UTR
GCCAGCTTCATCCTCAGATT+AGG 0.530843 4_3:-51732268 Msa0646180:CDS
CAACTATCTCATGCTGGCAG+TGG 0.539635 4_3:+51729618 None:intergenic
ATTAAATGAGAATCACAAAG+AGG 0.541148 4_3:+51730523 None:intergenic
TGAAAACCAAGAGAGTTCTC+AGG 0.545120 4_3:-51730048 Msa0646180:three_prime_UTR
TTGACATAGCCATAGCTTGG+AGG 0.545701 4_3:-51729888 Msa0646180:three_prime_UTR
AAATGTCCCATTCGTCAACC+AGG 0.546817 4_3:-51730926 Msa0646180:CDS
CCGTTGGAACCTCCAAGCTA+TGG 0.550015 4_3:+51729879 None:intergenic
ACATAGGTTACTTTGTGTAT+CGG 0.550561 4_3:+51732592 None:intergenic
CGTCTTAGATGAGACTATGC+AGG 0.552448 4_3:+51729929 None:intergenic
GCCTAATCTGAGGATGAAGC+TGG 0.558630 4_3:+51732267 None:intergenic
TACTGTGGTAGCGCTAGAGC+CGG 0.563549 4_3:+51729827 None:intergenic
GGAAAGAAATGATGCAAACT+CGG 0.563848 4_3:+51729356 None:intergenic
TTGGAGTTTCACGTTAGCAT+TGG 0.565060 4_3:-51730972 Msa0646180:CDS
CCATAGCTTGGAGGTTCCAA+CGG 0.571201 4_3:-51729879 Msa0646180:three_prime_UTR
CAAATTTGTTAGCAATCCCC+AGG 0.571380 4_3:-51730020 Msa0646180:three_prime_UTR
TGCTGCTGTCATGATTCCGT+TGG 0.573229 4_3:+51729863 None:intergenic
CTCCCAAAGACATAAAGAGA+AGG 0.573953 4_3:+51732221 None:intergenic
TATCTCATGCTGGCAGTGGA+CGG 0.575835 4_3:+51729622 None:intergenic
CAATGGTTCTCACTCGCTGT+AGG 0.577319 4_3:-51729767 Msa0646180:three_prime_UTR
TTGATGCATTTGTTAGACAT+GGG 0.581441 4_3:+51729302 None:intergenic
ATCTACAACACTAGCTGTTG+AGG 0.585209 4_3:+51730676 None:intergenic
ATATTGAACATGAGTCTGGT+AGG 0.588387 4_3:+51729483 None:intergenic
TTACAACATTGCTGAAAATG+CGG 0.588416 4_3:+51729576 None:intergenic
TCCCAAAGACATAAAGAGAA+GGG 0.588441 4_3:+51732222 None:intergenic
GGCAGCTGCTGCTAGTGTCA+GGG 0.590351 4_3:+51730697 None:intergenic
ACAAGGTTTGGCCTAATCTG+AGG 0.590525 4_3:+51732257 None:intergenic
TGATGAATTAAGTTGAGGGA+AGG 0.603091 4_3:+51729734 None:intergenic
TCACTGCAACTATCTCATGC+TGG 0.603777 4_3:+51729612 None:intergenic
AATGAAATACCTGGCTCTGT+GGG 0.604276 4_3:-51732298 Msa0646180:CDS
AAATTTCTGCACATTGAGTG+AGG 0.607970 4_3:-51730152 Msa0646180:three_prime_UTR
AATGCTAACGTGAAACTCCA+AGG 0.609152 4_3:+51730974 None:intergenic
GATCTCCTGCTAAATTCGCA+AGG 0.614662 4_3:-51730656 Msa0646180:CDS
TTAAATGAGAATCACAAAGA+GGG 0.615300 4_3:+51730524 None:intergenic
GAATGAAATACCTGGCTCTG+TGG 0.618928 4_3:-51732299 Msa0646180:CDS
AAGGGAAGCAGATGAAAACA+AGG 0.621514 4_3:+51732240 None:intergenic
AGTTACATGAATGAAATACC+TGG 0.624827 4_3:-51732307 Msa0646180:CDS
TAGGTTACTTTGTGTATCGG+TGG 0.628344 4_3:+51732595 None:intergenic
GTTATTCGAAATAGAGTCCG+AGG 0.628523 4_3:-51729460 Msa0646180:three_prime_UTR
TGATAATGGGAATGACACAT+AGG 0.631576 4_3:+51732576 None:intergenic
CGAGTTGGACTGTAAGCAGG+TGG 0.635678 4_3:+51730083 None:intergenic
AAATATTACAAAATATACAA+TGG 0.635722 4_3:+51730475 None:intergenic
ACAATTGGACTGTTGTCAAG+CGG 0.667940 4_3:+51729974 None:intergenic
AAGCGGAAATGTCATCCTTG+AGG 0.675341 4_3:+51729991 None:intergenic
TGGCTATGTCAAATGCAACA+CGG 0.695768 4_3:+51729899 None:intergenic
AGTACACACTACAAAGTACA+CGG 0.704863 4_3:+51730344 None:intergenic
TTCTGTGCAGACAACTACTG+TGG 0.708886 4_3:+51729812 None:intergenic
TTGCAGCCAAGACTGCACAA+TGG 0.723373 4_3:-51729784 Msa0646180:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTACAAAATATACAA+TGG + chr4_3:51731469-51731488 None:intergenic 10.0%
!! CTTTAATTATGTATGATAAT+GGG + chr4_3:51729381-51729400 None:intergenic 15.0%
!! TCTTTAATTATGTATGATAA+TGG + chr4_3:51729382-51729401 None:intergenic 15.0%
!! GAAATGCTATTAAATATTAT+AGG - chr4_3:51729524-51729543 Msa0646180:three_prime_UTR 15.0%
!!! ATTTTTTCTCAAATTATTAC+CGG - chr4_3:51729892-51729911 Msa0646180:three_prime_UTR 15.0%
!!! ATTCTTGCAAATTTTTTGTT+AGG + chr4_3:51729439-51729458 None:intergenic 20.0%
!! TTCATGTAACTTATTCTATA+AGG + chr4_3:51729625-51729644 None:intergenic 20.0%
!! ACATTAAATGAGAAATATCA+GGG + chr4_3:51730129-51730148 None:intergenic 20.0%
!! AACATTAAATGAGAAATATC+AGG + chr4_3:51730130-51730149 None:intergenic 20.0%
!! AGTGTTATATTATATCCAAA+AGG + chr4_3:51730226-51730245 None:intergenic 20.0%
!! TTTACATCACATAACATAAA+AGG - chr4_3:51730817-51730836 Msa0646180:intron 20.0%
!!! ATATTGTTGATTATTGTTGT+TGG - chr4_3:51731039-51731058 Msa0646180:intron 20.0%
!! TTAATATGATGAAGTTACAA+TGG - chr4_3:51731124-51731143 Msa0646180:intron 20.0%
!! TATAGTTATTGAACAATTGA+AGG - chr4_3:51731766-51731785 Msa0646180:intron 20.0%
! AAACAGAATTTCCTTAACAT+AGG + chr4_3:51729482-51729501 None:intergenic 25.0%
! TAACAAAGAGAAGAACAAAA+AGG + chr4_3:51729777-51729796 None:intergenic 25.0%
! ATAACTTAAATCTTGAGTAC+TGG - chr4_3:51730157-51730176 Msa0646180:three_prime_UTR 25.0%
! TGGATATAATATAACACTGA+TGG - chr4_3:51730228-51730247 Msa0646180:three_prime_UTR 25.0%
! TTCAAAATCAAGATACGATA+CGG + chr4_3:51730451-51730470 None:intergenic 25.0%
!!! ATTTTTCCGTATTGACATAT+CGG - chr4_3:51730471-51730490 Msa0646180:three_prime_UTR 25.0%
! AATGAGATTCAAGCATAAAA+AGG + chr4_3:51730661-51730680 None:intergenic 25.0%
! ATCACATAACATAAAAGGAA+AGG - chr4_3:51730822-51730841 Msa0646180:intron 25.0%
! ACAATAATCAACAATATTCC+TGG + chr4_3:51731036-51731055 None:intergenic 25.0%
! TTAGTACATGTTTGAATTGA+CGG - chr4_3:51731101-51731120 Msa0646180:intron 25.0%
! AACTAGAGTTATCAACATAT+CGG + chr4_3:51731202-51731221 None:intergenic 25.0%
! TTAAATGAGAATCACAAAGA+GGG + chr4_3:51731420-51731439 None:intergenic 25.0%
! ATTAAATGAGAATCACAAAG+AGG + chr4_3:51731421-51731440 None:intergenic 25.0%
! AAAAGCTCACAATATGTATT+TGG - chr4_3:51731539-51731558 Msa0646180:intron 25.0%
! AAAGCTCACAATATGTATTT+GGG - chr4_3:51731540-51731559 Msa0646180:intron 25.0%
! ATACTTTCAAAAATACTGTG+AGG - chr4_3:51731671-51731690 Msa0646180:intron 25.0%
! AGATATAACTGTCAAGAATA+TGG + chr4_3:51731818-51731837 None:intergenic 25.0%
!!! GACAGTTATATCTATTTTTG+TGG - chr4_3:51731825-51731844 Msa0646180:intron 25.0%
!!! ATCTATTTTTGTGGATATCT+TGG - chr4_3:51731834-51731853 Msa0646180:intron 25.0%
!!! AAGATGATGAATTAAGTTGA+GGG + chr4_3:51732214-51732233 None:intergenic 25.0%
!!! TATACATCTGTTTTTATCCT+CGG + chr4_3:51732501-51732520 None:intergenic 25.0%
! ACATAGGTTACTTTGTGTAT+CGG + chr4_3:51729352-51729371 None:intergenic 30.0%
!!! TTTTTTGTTAGGTAGAAGCT+TGG + chr4_3:51729428-51729447 None:intergenic 30.0%
ATGAAGATCAACCTATGTTA+AGG - chr4_3:51729468-51729487 Msa0646180:three_prime_UTR 30.0%
GGAAATTCTGTTTGAATCAT+AGG - chr4_3:51729489-51729508 Msa0646180:three_prime_UTR 30.0%
CTGAAAGAAATAAGCTTGTA+TGG - chr4_3:51729579-51729598 Msa0646180:three_prime_UTR 30.0%
AGTTACATGAATGAAATACC+TGG - chr4_3:51729634-51729653 Msa0646180:three_prime_UTR 30.0%
TATCGGTGCATGATAATTAT+CGG + chr4_3:51730102-51730121 None:intergenic 30.0%
AAACAAAAGAAACCAGTCAT+AGG + chr4_3:51730346-51730365 None:intergenic 30.0%
!!! TATGACTGGTTTCTTTTGTT+TGG - chr4_3:51730345-51730364 Msa0646180:three_prime_UTR 30.0%
GTCAAGTCAATTATGAAACA+TGG + chr4_3:51730552-51730571 None:intergenic 30.0%
!!! GACTTGACATTTTGTTGTTT+TGG - chr4_3:51730564-51730583 Msa0646180:CDS 30.0%
AAAAAGCTTAAAAGCTTTGC+AGG + chr4_3:51730631-51730650 None:intergenic 30.0%
ACATAACATAAAAGGAAAGG+AGG - chr4_3:51730825-51730844 Msa0646180:intron 30.0%
TTATTCATGTCCTAGCTATT+TGG - chr4_3:51730921-51730940 Msa0646180:CDS 30.0%
! TGATTATTGTTGTTGGAGAT+TGG - chr4_3:51731046-51731065 Msa0646180:intron 30.0%
! GATTATTGTTGTTGGAGATT+GGG - chr4_3:51731047-51731066 Msa0646180:intron 30.0%
TTCTTATCCAAATGCATGTA+TGG + chr4_3:51731171-51731190 None:intergenic 30.0%
! AACTCTAGTTTATTTGCTAC+AGG - chr4_3:51731212-51731231 Msa0646180:intron 30.0%
CAGATAAAGGTTAAAAAGAG+AGG + chr4_3:51731394-51731413 None:intergenic 30.0%
!!! TCGATCTAATGTTTTTTACG+GGG + chr4_3:51731446-51731465 None:intergenic 30.0%
!!! GTCGATCTAATGTTTTTTAC+GGG + chr4_3:51731447-51731466 None:intergenic 30.0%
!!! GGTCGATCTAATGTTTTTTA+CGG + chr4_3:51731448-51731467 None:intergenic 30.0%
ATAATAGAGCGAATACAGTT+TGG - chr4_3:51731647-51731666 Msa0646180:intron 30.0%
!!! CTATAGAGTTGTTTTTCTCT+AGG + chr4_3:51731751-51731770 None:intergenic 30.0%
TCAATATGTAATCTTCGAGT+TGG + chr4_3:51731876-51731895 None:intergenic 30.0%
! GAAGATGATGAATTAAGTTG+AGG + chr4_3:51732215-51732234 None:intergenic 30.0%
TTACAACATTGCTGAAAATG+CGG + chr4_3:51732368-51732387 None:intergenic 30.0%
! CTTTTATCATATTCTGGTCT+TGG + chr4_3:51732438-51732457 None:intergenic 30.0%
TAACATATTGAACATGAGTC+TGG + chr4_3:51732465-51732484 None:intergenic 30.0%
!! TTTTGTTTGCTAGCATCTTA+TGG + chr4_3:51732541-51732560 None:intergenic 30.0%
!! TGATAATGGGAATGACACAT+AGG + chr4_3:51729368-51729387 None:intergenic 35.0%
AAGCAGATGAAAACAAGGTT+TGG + chr4_3:51729699-51729718 None:intergenic 35.0%
TTCCCTTCTCTTTATGTCTT+TGG - chr4_3:51729717-51729736 Msa0646180:three_prime_UTR 35.0%
TCCCTTCTCTTTATGTCTTT+GGG - chr4_3:51729718-51729737 Msa0646180:three_prime_UTR 35.0%
TCCCAAAGACATAAAGAGAA+GGG + chr4_3:51729722-51729741 None:intergenic 35.0%
ACTCAGACTGAAATTGTGTT+TGG - chr4_3:51729829-51729848 Msa0646180:three_prime_UTR 35.0%
!!! TCATCCATTTTGAAGTATCG+GGG + chr4_3:51729958-51729977 None:intergenic 35.0%
!!! GTCATCCATTTTGAAGTATC+GGG + chr4_3:51729959-51729978 None:intergenic 35.0%
!!! CGTCATCCATTTTGAAGTAT+CGG + chr4_3:51729960-51729979 None:intergenic 35.0%
!!! AGTACTGGTGTGTTCTTTTT+TGG - chr4_3:51730172-51730191 Msa0646180:three_prime_UTR 35.0%
! AGCACTAACAATGTTCCTTT+TGG - chr4_3:51730208-51730227 Msa0646180:three_prime_UTR 35.0%
CAATTATGAAACATGGACAC+TGG + chr4_3:51730545-51730564 None:intergenic 35.0%
ATGATTGTCACCAAATAGCT+AGG + chr4_3:51730934-51730953 None:intergenic 35.0%
! TAGCTATTTGGTGACAATCA+TGG - chr4_3:51730933-51730952 Msa0646180:CDS 35.0%
! AGCTATTTGGTGACAATCAT+GGG - chr4_3:51730934-51730953 Msa0646180:CDS 35.0%
AATATTCCTGGTTGACGAAT+GGG + chr4_3:51731024-51731043 None:intergenic 35.0%
!!! CGATCTAATGTTTTTTACGG+GGG + chr4_3:51731445-51731464 None:intergenic 35.0%
AGTACACACTACAAAGTACA+CGG + chr4_3:51731600-51731619 None:intergenic 35.0%
! AAAAATACTGTGAGGAGTGT+AGG - chr4_3:51731679-51731698 Msa0646180:intron 35.0%
TTCTCTAGGCAATCAACTAA+TGG + chr4_3:51731737-51731756 None:intergenic 35.0%
AAATTTCTGCACATTGAGTG+AGG - chr4_3:51731789-51731808 Msa0646180:intron 35.0%
!! TGATGAATTAAGTTGAGGGA+AGG + chr4_3:51732210-51732229 None:intergenic 35.0%
CAACTATCTCATGGAACATT+TGG + chr4_3:51732237-51732256 None:intergenic 35.0%
GATTGTTTGCAACTATCTCA+TGG + chr4_3:51732246-51732265 None:intergenic 35.0%
! AGTTCTGGCTGAATTATCAT+TGG + chr4_3:51732278-51732297 None:intergenic 35.0%
! AGAATTTTTATGCGGAGTTC+TGG + chr4_3:51732293-51732312 None:intergenic 35.0%
GAACTCCGCATAAAAATTCT+TGG - chr4_3:51732293-51732312 Msa0646180:CDS 35.0%
! GGCTTCCAAGAATTTTTATG+CGG + chr4_3:51732301-51732320 None:intergenic 35.0%
! GGTAGGCTTTTATCATATTC+TGG + chr4_3:51732444-51732463 None:intergenic 35.0%
ATATTGAACATGAGTCTGGT+AGG + chr4_3:51732461-51732480 None:intergenic 35.0%
GGAAAGAAATGATGCAAACT+CGG + chr4_3:51732588-51732607 None:intergenic 35.0%
TCTTATATTTAGCGGCGCTA+AGG - chr4_3:51729318-51729337 Msa0646180:three_prime_UTR 40.0%
! TAGGTTACTTTGTGTATCGG+TGG + chr4_3:51729349-51729368 None:intergenic 40.0%
! CTTTCAGCTGAAGCTTCTTT+TGG + chr4_3:51729566-51729585 None:intergenic 40.0%
!! AATGAAATACCTGGCTCTGT+GGG - chr4_3:51729643-51729662 Msa0646180:three_prime_UTR 40.0%
AAGGGAAGCAGATGAAAACA+AGG + chr4_3:51729704-51729723 None:intergenic 40.0%
CTCCCAAAGACATAAAGAGA+AGG + chr4_3:51729723-51729742 None:intergenic 40.0%
!! CAAATTATTACCGGTGTCGT+CGG - chr4_3:51729901-51729920 Msa0646180:three_prime_UTR 40.0%
ATACTCTCCTGTTACGTATC+GGG + chr4_3:51730012-51730031 None:intergenic 40.0%
GATACTCTCCTGTTACGTAT+CGG + chr4_3:51730013-51730032 None:intergenic 40.0%
ATACTCTCCTGATACGTATC+GGG + chr4_3:51730079-51730098 None:intergenic 40.0%
GATACTCTCCTGATACGTAT+CGG + chr4_3:51730080-51730099 None:intergenic 40.0%
AGAAATATCAGGGCACGTAT+CGG + chr4_3:51730119-51730138 None:intergenic 40.0%
!! AACACTGATGGTGCTCTTTT+TGG - chr4_3:51730240-51730259 Msa0646180:three_prime_UTR 40.0%
!! ACACTGATGGTGCTCTTTTT+GGG - chr4_3:51730241-51730260 Msa0646180:three_prime_UTR 40.0%
AATCAAGATACGATACGGCT+GGG + chr4_3:51730446-51730465 None:intergenic 40.0%
AAATCAAGATACGATACGGC+TGG + chr4_3:51730447-51730466 None:intergenic 40.0%
! ACTGCACCGATATGTCAATA+CGG + chr4_3:51730480-51730499 None:intergenic 40.0%
AAAAGCTTTGCAGGATCTCA+GGG + chr4_3:51730622-51730641 None:intergenic 40.0%
TAAAAGCTTTGCAGGATCTC+AGG + chr4_3:51730623-51730642 None:intergenic 40.0%
! TTTGGTGACAATCATGGGTT+TGG - chr4_3:51730939-51730958 Msa0646180:CDS 40.0%
! TCATGGGTTTGGTTATACCT+TGG - chr4_3:51730950-51730969 Msa0646180:CDS 40.0%
AATGCTAACGTGAAACTCCA+AGG + chr4_3:51730970-51730989 None:intergenic 40.0%
TTGGAGTTTCACGTTAGCAT+TGG - chr4_3:51730969-51730988 Msa0646180:CDS 40.0%
!! TTCACGTTAGCATTGGTAGA+TGG - chr4_3:51730976-51730995 Msa0646180:CDS 40.0%
CAATATTCCTGGTTGACGAA+TGG + chr4_3:51731025-51731044 None:intergenic 40.0%
ATCTACAACACTAGCTGTTG+AGG + chr4_3:51731268-51731287 None:intergenic 40.0%
AAGATCCTTGCGAATTTAGC+AGG + chr4_3:51731293-51731312 None:intergenic 40.0%
! ACCTGCAGCAAAGCTTTATA+GGG + chr4_3:51731320-51731339 None:intergenic 40.0%
! TACCTGCAGCAAAGCTTTAT+AGG + chr4_3:51731321-51731340 None:intergenic 40.0%
GTACAGGATATCTGCAGTTA+TGG - chr4_3:51731338-51731357 Msa0646180:intron 40.0%
! CAGTTATGGCTTTTGTGTCA+TGG - chr4_3:51731352-51731371 Msa0646180:intron 40.0%
GTTAAAAAGAGAGGATGCCA+AGG + chr4_3:51731385-51731404 None:intergenic 40.0%
ACAAAGAGGGTAGCAGATAA+AGG + chr4_3:51731407-51731426 None:intergenic 40.0%
TGAAAACCAAGAGAGTTCTC+AGG - chr4_3:51731893-51731912 Msa0646180:intron 40.0%
!! CAAATTTGTTAGCAATCCCC+AGG - chr4_3:51731921-51731940 Msa0646180:intron 40.0%
ACAATTGGACTGTTGTCAAG+CGG + chr4_3:51731970-51731989 None:intergenic 40.0%
TGGCTATGTCAAATGCAACA+CGG + chr4_3:51732045-51732064 None:intergenic 40.0%
CATTTGACATAGCCATAGCT+TGG - chr4_3:51732050-51732069 Msa0646180:intron 40.0%
GTTATTCGAAATAGAGTCCG+AGG - chr4_3:51732481-51732500 Msa0646180:five_prime_UTR 40.0%
!! GAATGAAATACCTGGCTCTG+TGG - chr4_3:51729642-51729661 Msa0646180:three_prime_UTR 45.0%
ACAAGGTTTGGCCTAATCTG+AGG + chr4_3:51729687-51729706 None:intergenic 45.0%
TCTACAGCTACACAGCTTTC+TGG - chr4_3:51729749-51729768 Msa0646180:three_prime_UTR 45.0%
GAAGCCCCGATACTTCAAAA+TGG - chr4_3:51729951-51729970 Msa0646180:three_prime_UTR 45.0%
!! GTTACGTATCGGGAAGTATC+AGG + chr4_3:51730002-51730021 None:intergenic 45.0%
GATACTTCCCGATACGTAAC+AGG - chr4_3:51730002-51730021 Msa0646180:three_prime_UTR 45.0%
! TGATACGTATCGGGAAGTGT+CGG + chr4_3:51730070-51730089 None:intergenic 45.0%
TCCGTATCGTATCTCGTATC+CGG - chr4_3:51730506-51730525 Msa0646180:three_prime_UTR 45.0%
AAATGTCCCATTCGTCAACC+AGG - chr4_3:51731015-51731034 Msa0646180:intron 45.0%
CGTCAGTCCATACATGCATT+TGG - chr4_3:51731161-51731180 Msa0646180:intron 45.0%
GATCTCCTGCTAAATTCGCA+AGG - chr4_3:51731285-51731304 Msa0646180:intron 45.0%
TAAAGCTTTGCTGCAGGTAC+AGG - chr4_3:51731322-51731341 Msa0646180:intron 45.0%
TGTGTCATGGTTTCTGTCCT+TGG - chr4_3:51731365-51731384 Msa0646180:intron 45.0%
AAGCGGAAATGTCATCCTTG+AGG + chr4_3:51731953-51731972 None:intergenic 45.0%
GTAGACTGTAGCTGCACAAT+TGG + chr4_3:51731985-51732004 None:intergenic 45.0%
CGTCTTAGATGAGACTATGC+AGG + chr4_3:51732015-51732034 None:intergenic 45.0%
TTGACATAGCCATAGCTTGG+AGG - chr4_3:51732053-51732072 Msa0646180:intron 45.0%
TTCTGTGCAGACAACTACTG+TGG + chr4_3:51732132-51732151 None:intergenic 45.0%
TGAGAACCATTGTGCAGTCT+TGG + chr4_3:51732166-51732185 None:intergenic 45.0%
TCACTGCAACTATCTCATGC+TGG + chr4_3:51732332-51732351 None:intergenic 45.0%
!! TAAAAAATAAATTTAATCTT+CGG + chr4_3:51730035-51730054 None:intergenic 5.0%
!!! ATATTTGTTATTTAAAAAAA+TGG - chr4_3:51730372-51730391 Msa0646180:three_prime_UTR 5.0%
!!! AAAAGAAATATTTAAATTTT+AGG - chr4_3:51730699-51730718 Msa0646180:CDS 5.0%
GCCAGCTTCATCCTCAGATT+AGG - chr4_3:51729673-51729692 Msa0646180:three_prime_UTR 50.0%
GCCTAATCTGAGGATGAAGC+TGG + chr4_3:51729677-51729696 None:intergenic 50.0%
!! GGGAAGTATCAGGCAGGTAT+CGG + chr4_3:51729992-51730011 None:intergenic 50.0%
GACACTTCCCGATACGTATC+AGG - chr4_3:51730069-51730088 Msa0646180:three_prime_UTR 50.0%
ATGTGCTACGAGCCTATGAC+TGG - chr4_3:51730331-51730350 Msa0646180:three_prime_UTR 50.0%
CCCGGATACGAGATACGATA+CGG + chr4_3:51730510-51730529 None:intergenic 50.0%
CCGTATCGTATCTCGTATCC+GGG - chr4_3:51730507-51730526 Msa0646180:three_prime_UTR 50.0%
GCCCTATAAAGCTTTGCTGC+AGG - chr4_3:51731316-51731335 Msa0646180:intron 50.0%
!! CTTCGAGTTGGACTGTAAGC+AGG + chr4_3:51731864-51731883 None:intergenic 50.0%
GCATTGCCTGAGAACTCTCT+TGG + chr4_3:51731902-51731921 None:intergenic 50.0%
AAATGTCATCCTTGAGGCCG+AGG + chr4_3:51731947-51731966 None:intergenic 50.0%
CCATAGCTTGGAGGTTCCAA+CGG - chr4_3:51732062-51732081 Msa0646180:intron 50.0%
TGCTGCTGTCATGATTCCGT+TGG + chr4_3:51732081-51732100 None:intergenic 50.0%
TTGCAGCCAAGACTGCACAA+TGG - chr4_3:51732157-51732176 Msa0646180:intron 50.0%
CAATGGTTCTCACTCGCTGT+AGG - chr4_3:51732174-51732193 Msa0646180:intron 50.0%
TATCTCATGCTGGCAGTGGA+CGG + chr4_3:51732322-51732341 None:intergenic 50.0%
CAACTATCTCATGCTGGCAG+TGG + chr4_3:51732326-51732345 None:intergenic 50.0%
! TGGCAGCAGCTTTGACTTTG+AGG + chr4_3:51732609-51732628 None:intergenic 50.0%
!! CGTATCGGGAAGTATCAGGC+AGG + chr4_3:51729998-51730017 None:intergenic 55.0%
!! CACTGGACATCTCTGAAGCC+CGG + chr4_3:51730528-51730547 None:intergenic 55.0%
! CGAGTTGGACTGTAAGCAGG+TGG + chr4_3:51731861-51731880 None:intergenic 55.0%
TGTTAGCAATCCCCAGGCCT+CGG - chr4_3:51731927-51731946 Msa0646180:intron 55.0%
CCGTTGGAACCTCCAAGCTA+TGG + chr4_3:51732065-51732084 None:intergenic 55.0%
! GCAGCAGTTTGCTCCTGAAC+CGG - chr4_3:51732095-51732114 Msa0646180:intron 55.0%
! TACTGTGGTAGCGCTAGAGC+CGG + chr4_3:51732117-51732136 None:intergenic 55.0%
GTCATCAACGCCGACGACAC+CGG + chr4_3:51729914-51729933 None:intergenic 60.0%
GGCAGCTGCTGCTAGTGTCA+GGG + chr4_3:51731247-51731266 None:intergenic 60.0%
AGGCAGCTGCTGCTAGTGTC+AGG + chr4_3:51731248-51731267 None:intergenic 60.0%
GCACTTGTGCCCACAGAGCC+AGG + chr4_3:51729655-51729674 None:intergenic 65.0%
ATCCTTGAGGCCGAGGCCTG+GGG + chr4_3:51731940-51731959 None:intergenic 65.0%
CATCCTTGAGGCCGAGGCCT+GGG + chr4_3:51731941-51731960 None:intergenic 65.0%
TCATCCTTGAGGCCGAGGCC+TGG + chr4_3:51731942-51731961 None:intergenic 65.0%
! GGTAGCGCTAGAGCCGGTTC+AGG + chr4_3:51732111-51732130 None:intergenic 65.0%
ATCCCCAGGCCTCGGCCTCA+AGG - chr4_3:51731935-51731954 Msa0646180:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 51729317 51732646 51729317 ID=Msa0646180;Name=Msa0646180
chr4_3 mRNA 51729317 51732646 51729317 ID=Msa0646180-mRNA-1;Parent=Msa0646180;Name=Msa0646180-mRNA-1;_AED=0.34;_eAED=0.34;_QI=281|1|1|1|0.5|0.33|3|1218|166
chr4_3 exon 51729317 51730729 51729317 ID=Msa0646180-mRNA-1:exon:12601;Parent=Msa0646180-mRNA-1
chr4_3 exon 51730895 51731027 51730895 ID=Msa0646180-mRNA-1:exon:12600;Parent=Msa0646180-mRNA-1
chr4_3 exon 51732193 51732646 51732193 ID=Msa0646180-mRNA-1:exon:12599;Parent=Msa0646180-mRNA-1
chr4_3 five_prime_UTR 51732366 51732646 51732366 ID=Msa0646180-mRNA-1:five_prime_utr;Parent=Msa0646180-mRNA-1
chr4_3 CDS 51732193 51732365 51732193 ID=Msa0646180-mRNA-1:cds;Parent=Msa0646180-mRNA-1
chr4_3 CDS 51730895 51731027 51730895 ID=Msa0646180-mRNA-1:cds;Parent=Msa0646180-mRNA-1
chr4_3 CDS 51730535 51730729 51730535 ID=Msa0646180-mRNA-1:cds;Parent=Msa0646180-mRNA-1
chr4_3 three_prime_UTR 51729317 51730534 51729317 ID=Msa0646180-mRNA-1:three_prime_utr;Parent=Msa0646180-mRNA-1
Gene Sequence

>Msa0646180

ATGGTTAAGTTATATAGTTCAGAACCTTATAGAATAAGTTACATGAATGAAATACCTGGCTCTGTGGGCACAAGTGCCAGCTTCATCCTCAGATTAGGCCAAACCTTGTTTTCATCTGCTTCCCTTCTCTTTATGTCTTTGGGAGTTGAATTCTACAGCTACACAGCTTTCTGCTATTTGGTGACAATCATGGGTTTGGTTATACCTTGGAGTTTCACGTTAGCATTGGTAGATGGATACTCTGTACTAGTCAAATGTCCCATTCGTCAACCAGGAATATTGTTGATTATTGTTGTTGGAGATTGGGTATTATCAACCCTGACACTAGCAGCAGCTGCCTCAACAGCTAGTGTTGTAGATCTCCTGCTAAATTCGCAAGGATCTTTTTGCCCTATAAAGCTTTGCTGCAGGTACAGGATATCTGCAGTTATGGCTTTTGTGTCATGGTTTCTGTCCTTGGCATCCTCTCTTTTTAACCTTTATCTGCTACCCTCTTTGTGA

Protein sequence

>Msa0646180

MVKLYSSEPYRISYMNEIPGSVGTSASFILRLGQTLFSSASLLFMSLGVEFYSYTAFCYLVTIMGLVIPWSFTLALVDGYSVLVKCPIRQPGILLIIVVGDWVLSTLTLAAAASTASVVDLLLNSQGSFCPIKLCCRYRISAVMAFVSWFLSLASSLFNLYLLPSL*