AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0099270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0099270 MtrunA17_Chr1g0151061 93.668 1516 13 2 1 1433 1 1516 0.0 2930
Msa0099270 MtrunA17_Chr3g0136341 73.698 1114 209 2 1 1030 1 1114 0.0 1657
Msa0099270 MtrunA17_Chr4g0070771 50.982 1528 642 12 1 1428 5 1525 0.0 1514
Msa0099270 MtrunA17_Chr1g0183001 50.033 1531 630 14 6 1429 10 1512 0.0 1482
Msa0099270 MtrunA17_Chr7g0262581 49.078 1518 659 14 6 1428 10 1508 0.0 1443
Msa0099270 MtrunA17_Chr2g0309291 46.256 1576 698 12 1 1431 5 1576 0.0 1403
Msa0099270 MtrunA17_Chr1g0190471 49.577 1063 413 7 1 941 5 1066 0.0 1023
Msa0099270 MtrunA17_Chr7g0274361 48.657 1005 413 8 1 945 51 1012 0.0 951
Msa0099270 MtrunA17_Chr1g0184391 45.969 1042 440 13 2 948 6 1019 0.0 906
Msa0099270 MtrunA17_Chr1g0184601 49.777 896 362 6 2 811 8 901 0.0 896
Msa0099270 MtrunA17_Chr3g0136351 81.841 402 73 0 1031 1432 32 433 0.0 711
Msa0099270 MtrunA17_Chr1g0164931 42.819 752 357 16 41 738 204 936 4.36e-178 562
Msa0099270 MtrunA17_Chr1g0164271 46.903 678 306 11 310 951 45 704 1.58e-177 556
Msa0099270 MtrunA17_Chr1g0164271 29.618 314 168 6 805 1115 739 1002 1.33e-21 102
Msa0099270 MtrunA17_Chr1g0212011 42.404 757 354 17 41 738 210 943 4.03e-175 554
Msa0099270 MtrunA17_Chr2g0318501 40.726 744 365 15 44 738 227 943 3.13e-159 513
Msa0099270 MtrunA17_Chr8g0360791 38.874 746 377 18 44 738 208 925 4.44e-147 479
Msa0099270 MtrunA17_Chr1g0164291 55.253 257 67 1 6 214 22 278 2.04e-89 292
Msa0099270 MtrunA17_Chr1g0164261 45.643 241 117 3 1151 1391 28 254 1.30e-64 220
Msa0099270 MtrunA17_Chr7g0274381 51.691 207 75 2 1228 1428 21 208 7.72e-61 207
Msa0099270 MtrunA17_Chr7g0274371 42.236 322 151 8 948 1243 5 317 1.64e-60 210
Msa0099270 MtrunA17_Chr1g0164281 56.122 98 41 1 214 309 7 104 9.58e-32 120
Msa0099270 MtrunA17_Chr1g0164241 55.263 76 34 0 1264 1339 1 76 3.21e-23 95.9
Msa0099270 MtrunA17_Chr1g0164251 46.591 88 47 0 1027 1114 2 89 1.57e-20 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0099270 AT4G33200.1 67.085 1513 400 7 1 1428 9 1508 0.0 2039
Msa0099270 AT4G33200.4 67.063 1512 403 6 1 1428 9 1509 0.0 2037
Msa0099270 AT4G33200.2 66.226 1513 383 8 1 1428 9 1478 0.0 1998
Msa0099270 AT4G33200.3 66.028 1513 397 8 1 1428 9 1489 0.0 1994
Msa0099270 AT5G20490.1 50.557 1525 650 9 1 1428 4 1521 0.0 1509
Msa0099270 AT5G20490.2 50.557 1525 650 9 1 1428 5 1522 0.0 1509
Msa0099270 AT5G20490.3 52.610 1437 625 8 41 1428 27 1456 0.0 1499
Msa0099270 AT1G54560.2 50.263 1522 658 10 1 1428 5 1521 0.0 1498
Msa0099270 AT1G54560.1 50.263 1522 658 10 1 1428 8 1524 0.0 1498
Msa0099270 AT1G17580.1 49.902 1525 644 14 6 1428 9 1515 0.0 1471
Msa0099270 AT1G08730.2 50.654 1528 647 11 1 1428 5 1525 0.0 1466
Msa0099270 AT1G08730.1 50.755 1523 643 11 6 1428 18 1533 0.0 1465
Msa0099270 AT1G04160.1 48.856 1486 647 14 6 1401 10 1472 0.0 1419
Msa0099270 AT5G43900.3 48.672 1506 651 13 2 1410 66 1546 0.0 1419
Msa0099270 AT5G43900.1 48.672 1506 651 13 2 1410 6 1486 0.0 1419
Msa0099270 AT5G43900.2 48.473 1506 651 14 2 1410 66 1543 0.0 1409
Msa0099270 AT4G28710.1 47.886 1514 667 12 3 1413 6 1500 0.0 1384
Msa0099270 AT2G31900.4 46.293 1551 705 14 1 1428 5 1550 0.0 1381
Msa0099270 AT2G31900.1 46.293 1551 705 14 1 1428 5 1550 0.0 1381
Msa0099270 AT2G31900.2 46.327 1552 704 15 1 1428 5 1551 0.0 1379
Msa0099270 AT2G31900.5 47.536 1441 675 14 64 1428 1 1436 0.0 1326
Msa0099270 AT1G04160.2 48.541 1405 610 14 6 1320 10 1391 0.0 1324
Msa0099270 AT2G20290.3 45.363 1488 670 18 3 1401 6 1439 0.0 1260
Msa0099270 AT2G20290.1 45.194 1498 673 19 3 1401 17 1465 0.0 1260
Msa0099270 AT2G20290.2 45.194 1498 673 19 3 1401 6 1454 0.0 1259
Msa0099270 AT2G20290.4 45.187 1496 670 19 3 1401 6 1448 0.0 1256
Msa0099270 AT2G31900.3 44.025 1297 645 14 208 1428 2 1293 0.0 1076
Msa0099270 AT1G04600.1 49.719 1068 413 15 3 952 7 1068 0.0 984
Msa0099270 AT1G04600.1 33.121 628 344 12 827 1401 1097 1701 6.47e-84 304
Msa0099270 AT2G33240.6 48.289 1052 449 8 1 961 27 1074 0.0 971
Msa0099270 AT2G33240.6 36.727 275 158 6 925 1197 1207 1467 7.75e-44 176
Msa0099270 AT2G33240.6 37.321 209 128 2 1220 1428 1562 1767 2.30e-36 151
Msa0099270 AT2G33240.8 48.289 1052 449 8 1 961 22 1069 0.0 971
Msa0099270 AT2G33240.8 35.556 315 181 5 891 1197 1147 1447 7.54e-45 179
Msa0099270 AT2G33240.8 37.321 209 128 2 1220 1428 1542 1747 2.39e-36 151
Msa0099270 AT2G33240.7 48.289 1052 449 8 1 961 22 1069 0.0 971
Msa0099270 AT2G33240.7 35.556 315 181 5 891 1197 1147 1447 7.54e-45 179
Msa0099270 AT2G33240.7 37.321 209 128 2 1220 1428 1542 1747 2.39e-36 151
Msa0099270 AT2G33240.1 48.289 1052 449 8 1 961 22 1069 0.0 971
Msa0099270 AT2G33240.1 36.655 281 156 5 925 1197 1202 1468 7.30e-43 172
Msa0099270 AT2G33240.1 37.321 209 128 2 1220 1428 1563 1768 2.40e-36 151
Msa0099270 AT2G33240.3 48.289 1052 449 8 1 961 22 1069 0.0 971
Msa0099270 AT2G33240.3 37.091 275 150 5 925 1197 1202 1455 1.36e-43 175
Msa0099270 AT2G33240.3 37.321 209 128 2 1220 1428 1550 1755 2.31e-36 151
Msa0099270 AT2G33240.4 48.289 1052 449 8 1 961 22 1069 0.0 970
Msa0099270 AT2G33240.4 36.727 275 158 6 925 1197 1202 1462 9.40e-44 175
Msa0099270 AT2G33240.4 37.321 209 128 2 1220 1428 1557 1762 2.32e-36 151
Msa0099270 AT2G33240.2 48.289 1052 449 8 1 961 4 1051 0.0 970
Msa0099270 AT2G33240.2 36.727 275 158 6 925 1197 1184 1444 9.81e-44 175
Msa0099270 AT2G33240.2 37.321 209 128 2 1220 1428 1539 1744 2.19e-36 151
Msa0099270 AT3G58160.5 49.780 908 368 5 2 823 4 909 0.0 882
Msa0099270 AT3G58160.1 49.780 908 368 5 2 823 4 909 0.0 882
Msa0099270 AT3G58160.2 49.780 908 368 5 2 823 4 909 0.0 882
Msa0099270 AT3G58160.3 49.780 908 368 5 2 823 4 909 0.0 880
Msa0099270 AT3G58160.4 49.780 908 368 5 2 823 4 909 0.0 880
Msa0099270 AT3G19960.1 41.270 756 364 16 41 738 196 929 1.00e-173 551
Msa0099270 AT3G19960.4 41.270 756 364 16 41 738 196 929 1.00e-173 551
Msa0099270 AT3G19960.5 41.270 756 364 16 41 738 196 929 1.00e-173 551
Msa0099270 AT1G50360.1 40.879 751 374 17 41 738 188 921 1.55e-168 536
Msa0099270 AT3G19960.3 42.203 699 325 15 41 682 196 872 6.42e-166 521
Msa0099270 AT5G54280.1 40.320 749 361 19 44 740 58 772 7.02e-157 502
Msa0099270 AT5G54280.2 40.374 748 363 18 44 740 247 962 1.04e-156 506
Msa0099270 AT4G27370.2 42.192 730 344 17 44 714 200 910 1.31e-154 499
Msa0099270 AT4G27370.3 42.192 730 344 17 44 714 200 910 1.31e-154 499
Msa0099270 AT4G27370.1 41.918 730 346 17 44 714 198 908 5.01e-153 494
Msa0099270 AT4G27370.4 41.918 730 346 17 44 714 200 910 6.86e-153 494
Msa0099270 AT3G19960.2 38.530 789 349 19 41 738 196 939 1.04e-149 486
Msa0099270 AT2G33240.5 41.941 546 304 3 425 961 1 542 3.21e-123 416
Msa0099270 AT2G33240.5 36.655 281 156 5 925 1197 675 941 7.07e-43 172
Msa0099270 AT2G33240.5 37.321 209 128 2 1220 1428 1036 1241 9.52e-37 152
Msa0099270 AT5G20450.7 39.381 226 100 6 1031 1250 96 290 4.22e-42 157
Msa0099270 AT5G20450.8 39.381 226 100 6 1031 1250 96 290 4.22e-42 157
Msa0099270 AT5G20450.3 39.381 226 100 6 1031 1250 118 312 5.89e-42 157
Msa0099270 AT5G20450.11 39.381 226 100 6 1031 1250 140 334 6.15e-42 157
Msa0099270 AT5G20450.12 39.381 226 100 6 1031 1250 140 334 6.15e-42 157
Msa0099270 AT5G20450.2 39.381 226 100 6 1031 1250 140 334 6.15e-42 157
Msa0099270 AT5G20450.9 39.381 226 100 6 1031 1250 117 311 6.19e-42 157
Msa0099270 AT5G20450.1 39.381 226 100 6 1031 1250 147 341 6.85e-42 157
Msa0099270 AT5G20450.5 39.381 226 100 6 1031 1250 161 355 8.43e-42 158
Msa0099270 AT5G20450.6 39.381 226 100 6 1031 1250 162 356 9.58e-42 158
Msa0099270 AT5G20470.1 47.619 168 76 2 1272 1428 381 547 1.18e-41 162
Msa0099270 AT5G20470.1 32.239 335 162 4 791 1122 96 368 5.52e-34 139
Msa0099270 AT5G20450.10 38.914 221 99 5 1031 1245 140 330 4.28e-41 156
Msa0099270 AT1G42680.1 61.446 83 27 1 103 185 56 133 4.87e-28 112
Msa0099270 AT5G20450.4 49.485 97 43 1 1031 1121 140 236 7.71e-26 109

Find 304 sgRNAs with CRISPR-Local

Find 1377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCTCCATTTAAGTTTAT+TGG 0.084413 1_3:-5374302 Msa0099270:CDS
TTCAGTAGCTACCAGATTTA+AGG 0.101221 1_3:-5384085 Msa0099270:intron
ACCATGCGCCCTTCCTGTTT+TGG 0.168200 1_3:+5373440 None:intergenic
CTAAGTTGTTTCAGAATTTC+CGG 0.181227 1_3:-5384424 Msa0099270:CDS
TAGATGTATCAAAGAGAATT+TGG 0.182157 1_3:-5376826 Msa0099270:CDS
TGTGGTCGATTCAATGAATT+TGG 0.190428 1_3:+5383828 None:intergenic
ATAAACTTAAATGGAGATTT+TGG 0.199628 1_3:+5374305 None:intergenic
ATTAATAGGCCCGGAAATTT+TGG 0.206615 1_3:-5383253 Msa0099270:CDS
CTCATTAATCGTAGCCAATT+TGG 0.211610 1_3:+5379708 None:intergenic
CACCTTCCATCCAAAATTTC+CGG 0.215258 1_3:+5383243 None:intergenic
CTCCAAACGTGCTGAGGTTT+TGG 0.235350 1_3:-5381757 Msa0099270:CDS
TGCATCTAGAAAAGAAAATA+AGG 0.240137 1_3:-5380279 Msa0099270:CDS
TCATATCCAATAAACTTAAA+TGG 0.247616 1_3:+5374296 None:intergenic
CTGTTGCTGATGCATCTTAT+AGG 0.253722 1_3:-5389417 Msa0099270:intron
AAGCAGTGATAATTTCTTTC+CGG 0.255573 1_3:+5387988 None:intergenic
CCAGATGCAAATTGGAGTTT+TGG 0.262465 1_3:-5386499 Msa0099270:CDS
AAGGCAAGCTGTTGGATTCT+TGG 0.263324 1_3:-5372028 Msa0099270:intron
AAAAGATGTATGCAGCTAAA+AGG 0.263529 1_3:-5381011 Msa0099270:CDS
TTGAGTGCTTTAAGGATAAT+AGG 0.270716 1_3:-5386464 Msa0099270:intron
GTAGTTGACTTACAATTTCT+TGG 0.273873 1_3:-5370856 Msa0099270:exon
GATTGTAATGCTGCGGTTGC+TGG 0.281108 1_3:-5386705 Msa0099270:CDS
TGAATTAGATGCGGCCAAAT+TGG 0.282394 1_3:-5379722 Msa0099270:CDS
TACTAACCCCACAGCGTAAT+TGG 0.283641 1_3:+5383778 None:intergenic
TGAAAGTTGAAAATTGAAAA+TGG 0.296635 1_3:+5392028 None:intergenic
CTTTATACTGTTCCATCATA+TGG 0.303777 1_3:+5389476 None:intergenic
CTTCAGGAGGCCAATGAATC+TGG 0.304957 1_3:-5380361 Msa0099270:intron
GGCTGGTCAAATTGGCGTTT+TGG 0.307753 1_3:-5381781 Msa0099270:CDS
CACTTCAACTCCTTAGATTA+GGG 0.309646 1_3:-5391970 Msa0099270:five_prime_UTR
AGGTTCAACGGTTTGGGTTC+CGG 0.313197 1_3:-5391893 Msa0099270:CDS
GTAGATCGCTATGGATTAAT+AGG 0.321057 1_3:-5383267 Msa0099270:CDS
GTTTCAGTCAAATCCACTTT+TGG 0.321272 1_3:-5389023 Msa0099270:intron
ACACTTCAACTCCTTAGATT+AGG 0.323363 1_3:-5391971 Msa0099270:five_prime_UTR
TACGCAAAGGTTCAACGGTT+TGG 0.326139 1_3:-5391900 Msa0099270:CDS
GTCAATTCCCAGATGCAAAT+TGG 0.328042 1_3:-5386507 Msa0099270:CDS
CGCAGCTAAGACACGAAATA+TGG 0.329461 1_3:+5387517 None:intergenic
TCTGGCTTGACCAGCAGAAC+TGG 0.331243 1_3:-5376355 Msa0099270:CDS
GATGCAAAGGAGTATAAATT+AGG 0.334988 1_3:-5387779 Msa0099270:CDS
AATGTTTCATGTGTTGATTT+TGG 0.335956 1_3:+5384452 None:intergenic
ATGATATTGTCTTGCCATAT+TGG 0.337491 1_3:-5376471 Msa0099270:CDS
CCAAAACTCCAATTTGCATC+TGG 0.340032 1_3:+5386499 None:intergenic
GGCGGTGTAGACAAGCAAAA+AGG 0.342459 1_3:-5380484 Msa0099270:CDS
CATGGAATTCTCTCTTTGCT+TGG 0.342607 1_3:+5379774 None:intergenic
AGCAGTGATAATTTCTTTCC+GGG 0.347275 1_3:+5387989 None:intergenic
ACCAATGGTCAGCGTTATAC+TGG 0.350572 1_3:-5376382 Msa0099270:CDS
GAATTTGAAACCCTAATCTA+AGG 0.351378 1_3:+5391960 None:intergenic
ACCTTCCATCCAAAATTTCC+GGG 0.352329 1_3:+5383244 None:intergenic
GAATATTCAGACACGAATAC+TGG 0.357005 1_3:+5370909 None:intergenic
ACGCAAAGGTTCAACGGTTT+GGG 0.358650 1_3:-5391899 Msa0099270:CDS
GAGCATATAAATGTTCAAAA+AGG 0.359248 1_3:-5378027 Msa0099270:CDS
GTTCATCTTGTAACTGATTC+CGG 0.363757 1_3:-5391817 Msa0099270:CDS
TTGGCAATGCAAGGACTGTT+AGG 0.366928 1_3:-5388994 Msa0099270:CDS
TCTTTGCTATAGACATATAC+AGG 0.367010 1_3:-5389553 Msa0099270:intron
TTTATGCTCGTTTATTTGAT+TGG 0.368767 1_3:-5386659 Msa0099270:intron
AGCAGCTGCAGTTTCCCTTC+AGG 0.368985 1_3:-5381664 Msa0099270:CDS
GGCATGAGCTGAATTATATA+AGG 0.374749 1_3:-5372047 Msa0099270:CDS
AACGGTGAATATATGAAATC+TGG 0.375097 1_3:-5372204 Msa0099270:CDS
TGCTGTTCTGCAAAATCAAT+TGG 0.375328 1_3:-5379674 Msa0099270:CDS
TTTCTCAGGGCTGGTCAAAT+TGG 0.377401 1_3:-5381789 Msa0099270:CDS
AACGGTTTGGGTTCCGGATA+AGG 0.382102 1_3:-5391887 Msa0099270:CDS
TGTAAGCTTGACGTCCTCTT+TGG 0.382774 1_3:-5370645 Msa0099270:three_prime_UTR
GGGAAAAGACCGGACACAAA+AGG 0.384672 1_3:+5384150 None:intergenic
CAGAGCTGCTATATCTGTTC+AGG 0.384771 1_3:-5380839 Msa0099270:intron
CTTGCATTCTCAAACATTTG+TGG 0.384819 1_3:+5383810 None:intergenic
ACTCTTACGTGGAGCACTTA+AGG 0.385000 1_3:+5377662 None:intergenic
GAAATCTGGTCTCGCAGAAC+TGG 0.386477 1_3:-5372190 Msa0099270:CDS
GTCCAAAACCTCAGCACGTT+TGG 0.389385 1_3:+5381755 None:intergenic
GGTTTAGCTAGGTAATTTGT+GGG 0.392853 1_3:+5370709 None:intergenic
TGGTTTAGCTAGGTAATTTG+TGG 0.396445 1_3:+5370708 None:intergenic
AGATGTATCAAAGAGAATTT+GGG 0.398823 1_3:-5376825 Msa0099270:CDS
AAGAAAACTCACCTTCTTGC+CGG 0.400992 1_3:+5391798 None:intergenic
TTGTGGCAATACAATGTCTA+TGG 0.401029 1_3:-5380505 Msa0099270:CDS
CTCTCAGTGCGGGAGGCAAT+TGG 0.404332 1_3:+5377424 None:intergenic
GGTTGCTGGTCGGGATGCTT+TGG 0.405182 1_3:-5386691 Msa0099270:CDS
AAAAGCGTAAAGTCGAAAAC+TGG 0.406109 1_3:-5392113 Msa0099270:five_prime_UTR
ATGTACTGGGATGACAAGTA+TGG 0.406498 1_3:-5371303 Msa0099270:CDS
CACCGATATTATAGGCCTAT+TGG 0.408025 1_3:-5380574 Msa0099270:intron
ATCTAATAGGAAAGAATTAG+AGG 0.408164 1_3:+5371121 None:intergenic
CATATGATGGAACAGTATAA+AGG 0.408488 1_3:-5389475 Msa0099270:CDS
TTAGATTAATACTTCAACTC+TGG 0.408582 1_3:-5370813 Msa0099270:three_prime_UTR
CTCTGCCGAAGATGTAGATA+TGG 0.410245 1_3:-5370967 Msa0099270:CDS
ACCTCAGATCATCATCTAAT+AGG 0.410847 1_3:+5371108 None:intergenic
GCAGGACCAAAGTATTTCTC+AGG 0.412371 1_3:-5381803 Msa0099270:CDS
CAGAGGAACTTACGTTCAAA+TGG 0.415327 1_3:-5376415 Msa0099270:CDS
TTTATAATTTCTCATTATGC+TGG 0.415389 1_3:-5384359 Msa0099270:CDS
GATTGTGGAGAGAGCCCAAC+AGG 0.415842 1_3:+5373399 None:intergenic
TAATGCTGCGGTTGCTGGTC+GGG 0.415871 1_3:-5386700 Msa0099270:CDS
AAAGTAGTAGCTTACAAATA+CGG 0.416115 1_3:+5377396 None:intergenic
AACTAAACTTGAGAAGCAAT+TGG 0.420915 1_3:-5380320 Msa0099270:CDS
ATCGAATCAGTACTATGTAC+TGG 0.421837 1_3:-5371317 Msa0099270:CDS
GGGCTCTCTCCACAATCATC+TGG 0.422970 1_3:-5373393 Msa0099270:CDS
GAAATTCAGTTTGATAGAAA+TGG 0.424293 1_3:-5388078 Msa0099270:CDS
TCTTTCTTGTTCAGTTGGGC+AGG 0.425419 1_3:-5381821 Msa0099270:intron
TCAATCTCGTCCAGATCTAT+AGG 0.425653 1_3:+5370936 None:intergenic
GAAGTGTTGGACAGCCAATA+TGG 0.427063 1_3:+5376457 None:intergenic
TCAATATTACACTCTTCAAC+AGG 0.427979 1_3:-5372384 Msa0099270:intron
AAGTTTATTGGATATGATGA+TGG 0.429382 1_3:-5374290 Msa0099270:CDS
CATTGGTGTCATTGCTCTGT+TGG 0.430080 1_3:-5384584 Msa0099270:CDS
GGCAATCCCTCCTATAGATC+TGG 0.432003 1_3:-5370946 Msa0099270:CDS
ATAGACTCAACTTACCTCAT+TGG 0.432361 1_3:+5371266 None:intergenic
TATATGATACGAGCTGCAAT+AGG 0.437364 1_3:+5376786 None:intergenic
GTCTCGCAGAACTGGAGAAA+TGG 0.438327 1_3:-5372182 Msa0099270:CDS
GTTTACCATCTCCTTTGCAT+TGG 0.442983 1_3:+5372155 None:intergenic
ACCAGCCCTGAGAAATACTT+TGG 0.447289 1_3:+5381797 None:intergenic
AGTAAAATCTATGAACTAAA+CGG 0.455208 1_3:-5387725 Msa0099270:CDS
AGATTATTTATACCGTGGTT+GGG 0.456781 1_3:+5392060 None:intergenic
ACTTCTGCAACTATGTATTC+AGG 0.457059 1_3:-5374153 Msa0099270:intron
TGAATCTGGTGCCCTCCGTC+TGG 0.458954 1_3:-5380347 Msa0099270:CDS
TATACAAATGTCTTCTTCAC+TGG 0.460233 1_3:-5376767 Msa0099270:CDS
AAGATTATTTATACCGTGGT+TGG 0.462091 1_3:+5392059 None:intergenic
TTGCCAAATGCCTCCAAAAG+TGG 0.463301 1_3:+5389010 None:intergenic
GGAAAAGACCGGACACAAAA+GGG 0.466433 1_3:+5384151 None:intergenic
ACGGAGGGCACCAGATTCAT+TGG 0.467043 1_3:+5380351 None:intergenic
TTTATGTTTGTGTTGTACAT+AGG 0.468221 1_3:-5370606 Msa0099270:three_prime_UTR
AACGTAAGTTCCTCTGTAAG+AGG 0.469027 1_3:+5376422 None:intergenic
ATGCGGCTCTGTTGACTTGA+GGG 0.469575 1_3:+5383869 None:intergenic
ACAGTATAAAGGAGCTCCAT+TGG 0.470943 1_3:-5389464 Msa0099270:CDS
CACAATCATCTGGCAGTCAG+TGG 0.471708 1_3:-5373383 Msa0099270:CDS
GACTTATCCGAACAGCTTCA+AGG 0.472567 1_3:+5383328 None:intergenic
AACAGGTAGTTAGTGTAATG+AGG 0.473768 1_3:-5371175 Msa0099270:intron
AGGGCGTCCTTGAAGCTGTT+CGG 0.474085 1_3:-5383335 Msa0099270:CDS
AGGCATCAGTCACGAGGATC+AGG 0.475227 1_3:-5387651 Msa0099270:intron
ACTCACATTCCCAGTTCTGC+TGG 0.476575 1_3:+5376345 None:intergenic
TCCCTTCAGGCATGCTGCAG+AGG 0.479375 1_3:-5381651 Msa0099270:intron
AAAGATGTATGCAGCTAAAA+GGG 0.479681 1_3:-5381010 Msa0099270:CDS
CAAAACTCCAATTTGCATCT+GGG 0.480593 1_3:+5386500 None:intergenic
GATAGAAATGGTAGAATGTC+CGG 0.484367 1_3:-5388066 Msa0099270:CDS
ATCAGTTGTGCGCCTCTGAA+AGG 0.484992 1_3:-5387963 Msa0099270:CDS
GATCTAAGTCATCAGCAGAT+AGG 0.485758 1_3:-5377240 Msa0099270:CDS
GGCTCGTTGATAAGATCAAT+AGG 0.486758 1_3:-5386545 Msa0099270:CDS
TGGAATATGCTGGTTTAGCT+AGG 0.488388 1_3:+5370698 None:intergenic
AAGCTTGGTGAAGGGATTAA+CGG 0.488437 1_3:+5389516 None:intergenic
ATCATACAAATGAGGAAGCT+TGG 0.489175 1_3:+5389501 None:intergenic
AGGAGGGCAATGGATATTGT+AGG 0.491195 1_3:-5387671 Msa0099270:CDS
AGAATTTCCGGTCTCACCCT+AGG 0.492023 1_3:-5384412 Msa0099270:CDS
GTAATGCTGCGGTTGCTGGT+CGG 0.492911 1_3:-5386701 Msa0099270:CDS
GATTGCCATATCTACATCTT+CGG 0.496534 1_3:+5370962 None:intergenic
AATTTCTCATTATGCTGGAA+AGG 0.496836 1_3:-5384354 Msa0099270:intron
CGATGAGAGTCTGACATGCC+TGG 0.500233 1_3:+5377262 None:intergenic
TGTTGCTTGAAAAGTATAGC+TGG 0.500754 1_3:+5374242 None:intergenic
TCTACATCTTCGGCAGAGAA+AGG 0.500849 1_3:+5370972 None:intergenic
AGTTAGTGTAATGAGGGAAA+TGG 0.501388 1_3:-5371168 Msa0099270:CDS
AACAGAGCAATGACACCAAT+GGG 0.501939 1_3:+5384586 None:intergenic
TCAGAGTTTGTAGATCGCTA+TGG 0.502389 1_3:-5383276 Msa0099270:CDS
TTCAAAAGTATATACGTATG+AGG 0.502856 1_3:-5380966 Msa0099270:CDS
GATTCGACAGGACCTTTGTC+CGG 0.504231 1_3:-5371878 Msa0099270:intron
AGCTCGAGCAAAATGTGAAA+AGG 0.504928 1_3:-5377954 Msa0099270:intron
TCAGTTGTGCGCCTCTGAAA+GGG 0.506118 1_3:-5387962 Msa0099270:intron
AGGTAAAAGTCAATCTATCT+TGG 0.506704 1_3:-5389268 Msa0099270:CDS
ACCAAAGTATTTCTCAGGGC+TGG 0.507477 1_3:-5381798 Msa0099270:CDS
ACCTCTGCAGCATGCCTGAA+GGG 0.507849 1_3:+5381650 None:intergenic
TTGCTCTGTTGGATGAAGCT+TGG 0.508267 1_3:-5384573 Msa0099270:intron
GCATAGAAGAGCAGAAGTGT+TGG 0.508374 1_3:+5376444 None:intergenic
ATCATACAATCGCATATTCG+AGG 0.509978 1_3:-5380901 Msa0099270:CDS
TGAAGCTGTTCGGATAAGTC+TGG 0.510658 1_3:-5383325 Msa0099270:CDS
TGAATACATAGTTGCAGAAG+TGG 0.512143 1_3:+5374155 None:intergenic
ATTGGAGGATGTACAAGGTC+AGG 0.512194 1_3:-5380556 Msa0099270:CDS
TTTAAATAATGGAAATGACT+TGG 0.512713 1_3:+5387752 None:intergenic
CAGTATAAAGGAGCTCCATT+GGG 0.512733 1_3:-5389463 Msa0099270:CDS
GTTTCTCAATCGTTTCGTCT+CGG 0.513390 1_3:+5378004 None:intergenic
CTGTTAGGAACGACAATTCA+AGG 0.513642 1_3:-5388979 Msa0099270:intron
CCTATGTGAAAACTTAGATC+AGG 0.514232 1_3:-5370467 Msa0099270:three_prime_UTR
AAGTAGTAGCTTACAAATAC+GGG 0.514350 1_3:+5377397 None:intergenic
CAACTGAAGCAAGATATTGC+TGG 0.515011 1_3:+5380525 None:intergenic
TTTGTATGATAACCATATGA+TGG 0.515193 1_3:-5389488 Msa0099270:CDS
GACCTTGTACATCCTCCAAT+AGG 0.515308 1_3:+5380559 None:intergenic
CAGCGTTATACTGGACAGTC+TGG 0.515344 1_3:-5376373 Msa0099270:CDS
TTCTAATAAGTAAGTTCTGA+TGG 0.515754 1_3:+5388038 None:intergenic
AGGCATAAATGACGCTCTAA+AGG 0.518102 1_3:-5376697 Msa0099270:intron
AACAAGTTTACGAATGAAGA+AGG 0.524066 1_3:+5372426 None:intergenic
AAAGGAAAATGCTATGCTAA+AGG 0.525327 1_3:-5379590 Msa0099270:intron
GCAACAACTTCAAGCACTCA+TGG 0.527059 1_3:-5383895 Msa0099270:CDS
ACCCACGCTACTTCCTTATC+CGG 0.527986 1_3:+5391874 None:intergenic
AGAAGAGTAACGATCTTGGT+TGG 0.529792 1_3:-5370744 Msa0099270:three_prime_UTR
ATGCCAACCTAGGGTGAGAC+CGG 0.530855 1_3:+5384405 None:intergenic
TGGAGGCATTTGGCAATGCA+AGG 0.532548 1_3:-5389003 Msa0099270:CDS
AACCTCTGCAGCATGCCTGA+AGG 0.534092 1_3:+5381649 None:intergenic
CATAGATTACTGGAATATGC+TGG 0.536414 1_3:+5370688 None:intergenic
GATGATCTTGAAGATTCCTC+TGG 0.536595 1_3:+5384120 None:intergenic
AAGATTCCTCTGGTAGCAAA+GGG 0.537736 1_3:+5384130 None:intergenic
GTAAGTTCTGATGGCAGCAC+CGG 0.538052 1_3:+5388047 None:intergenic
CATAAAGACGAGGAGGGCAA+TGG 0.538861 1_3:-5387681 Msa0099270:CDS
TACGGGATTTCTCTCAGTGC+GGG 0.540195 1_3:+5377414 None:intergenic
TGTAGTATGCAGGAATGTCT+TGG 0.540505 1_3:-5372068 Msa0099270:intron
ACTTGTGAAATGTAGTATGC+AGG 0.542383 1_3:-5372078 Msa0099270:intron
GAATGTACGCAAAGGTTCAA+CGG 0.542795 1_3:-5391905 Msa0099270:CDS
TTCTGTGGCTGAATTACGAA+AGG 0.543317 1_3:-5379608 Msa0099270:CDS
TTAAATAATGGAAATGACTT+GGG 0.544434 1_3:+5387753 None:intergenic
CTCTTCTATGCCTCTTACAG+AGG 0.547250 1_3:-5376432 Msa0099270:CDS
GTCTCACCCTAGGTTGGCAT+CGG 0.547976 1_3:-5384402 Msa0099270:CDS
ATCACGAGTTGTGCAGATAA+CGG 0.548010 1_3:-5388013 Msa0099270:CDS
AATCATCTAGATCTCCTGTT+GGG 0.549508 1_3:-5373413 Msa0099270:CDS
TTTAGAGCAATGATGAATGA+AGG 0.550072 1_3:-5389288 Msa0099270:intron
AGGTAGAAGAGTAACGATCT+TGG 0.550446 1_3:-5370748 Msa0099270:three_prime_UTR
CTGGCTTGACCAGCAGAACT+GGG 0.551560 1_3:-5376354 Msa0099270:CDS
AGATTTCATATATTCACCGT+TGG 0.553465 1_3:+5372206 None:intergenic
GCATCTAGAAAAGAAAATAA+GGG 0.554144 1_3:-5380278 Msa0099270:intron
ATAGGACACCACAATGCTCC+AGG 0.554400 1_3:+5370485 None:intergenic
TGACATGCCTGGCGTAAAAG+AGG 0.554671 1_3:+5377273 None:intergenic
CAAATGAGGAAGCTTGGTGA+AGG 0.555186 1_3:+5389507 None:intergenic
GAAGATTCCTCTGGTAGCAA+AGG 0.557258 1_3:+5384129 None:intergenic
ATGTATAGAAAAGTAGAAGA+TGG 0.557436 1_3:-5370668 Msa0099270:three_prime_UTR
ATCTTGGTAAGCGGTGAAAG+TGG 0.557533 1_3:-5389252 Msa0099270:CDS
ACAGGTAGTTAGTGTAATGA+GGG 0.557771 1_3:-5371174 Msa0099270:intron
ACAATCATCTGGCAGTCAGT+GGG 0.557919 1_3:-5373382 Msa0099270:CDS
AACCTTTCCGATGCCAACCT+AGG 0.559064 1_3:+5384395 None:intergenic
TTTGGACTCCAAACGTGCTG+AGG 0.559434 1_3:-5381763 Msa0099270:CDS
AAAGAGAGAGCTAGTTTCTG+TGG 0.560169 1_3:-5379623 Msa0099270:CDS
GTAAGCGGTGAAAGTGGCGC+TGG 0.560194 1_3:-5389246 Msa0099270:CDS
TCACTCATGAGCAAACTTCG+TGG 0.560242 1_3:-5373336 Msa0099270:CDS
AATTATATAAGGCAAGCTGT+TGG 0.561934 1_3:-5372036 Msa0099270:CDS
ATCAAGATTTCATATGCAGA+TGG 0.563917 1_3:-5387423 Msa0099270:CDS
AATGCGGCTCTGTTGACTTG+AGG 0.563945 1_3:+5383868 None:intergenic
TTTCCGGTCTCACCCTAGGT+TGG 0.564067 1_3:-5384408 Msa0099270:CDS
CCCAAAACAGGAAGGGCGCA+TGG 0.566096 1_3:-5373441 Msa0099270:CDS
GCAATATCTTGCTTCAGTTG+TGG 0.569707 1_3:-5380522 Msa0099270:CDS
ATCATTGGAAGAGATTCGAC+AGG 0.569864 1_3:-5371890 Msa0099270:CDS
TCCAGTATAACGCTGACCAT+TGG 0.570272 1_3:+5376381 None:intergenic
GAAGAGTGTAATATTGATGA+AGG 0.570465 1_3:+5372390 None:intergenic
GGCTCTTGATTGTAATGCTG+CGG 0.571008 1_3:-5386712 Msa0099270:CDS
ACCTTTCCGATGCCAACCTA+GGG 0.572157 1_3:+5384396 None:intergenic
TCATACACCAATTACGCTGT+GGG 0.572422 1_3:-5383785 Msa0099270:CDS
AGCAATTGGAAGAGCTCACA+TGG 0.573291 1_3:-5380306 Msa0099270:CDS
AACGCACTTTCTCACAGCGC+GGG 0.574966 1_3:-5392001 Msa0099270:five_prime_UTR
ATCTCGTCCAGATCTATAGG+AGG 0.575863 1_3:+5370939 None:intergenic
GATAACCAATGCAAAGGAGA+TGG 0.576476 1_3:-5372160 Msa0099270:intron
GACTGTTCTATCATCACCAC+CGG 0.578968 1_3:+5389167 None:intergenic
CGATATTATAGGCCTATTGG+AGG 0.580144 1_3:-5380571 Msa0099270:intron
CTCTGAATACATTCTTCGAG+TGG 0.582466 1_3:+5383293 None:intergenic
ACCCTAGGTTGGCATCGGAA+AGG 0.582626 1_3:-5384397 Msa0099270:CDS
GATAAGATCAATAGGTCTGT+CGG 0.584426 1_3:-5386537 Msa0099270:CDS
AATATTCAGACACGAATACT+GGG 0.584566 1_3:+5370910 None:intergenic
GCTGTTCGGATAAGTCTGGC+AGG 0.585042 1_3:-5383321 Msa0099270:CDS
TGTAACTGATTCCGGCAAGA+AGG 0.586363 1_3:-5391809 Msa0099270:intron
CACTGACTGCCAGATGATTG+TGG 0.586956 1_3:+5373384 None:intergenic
AAACAGGAAGGGCGCATGGT+GGG 0.588563 1_3:-5373437 Msa0099270:CDS
CAACAGAGCAATGACACCAA+TGG 0.589279 1_3:+5384585 None:intergenic
TCGAATCAGTACTATGTACT+GGG 0.591687 1_3:-5371316 Msa0099270:CDS
AGATGAGTACTTCTTCTCAA+AGG 0.598633 1_3:+5378059 None:intergenic
GAAATGGATAACCAATGCAA+AGG 0.599760 1_3:-5372166 Msa0099270:CDS
TACAGGTAATACATCAGAAG+AGG 0.602247 1_3:-5371918 Msa0099270:intron
TCTCTTTGATACATCTAGAG+AGG 0.602454 1_3:+5376832 None:intergenic
TCGCTATGGATTAATAGGCC+CGG 0.602507 1_3:-5383262 Msa0099270:CDS
CGAACAATACAAACTCGAGA+AGG 0.602568 1_3:-5386747 Msa0099270:CDS
ATTAGACACCCAAAACAGGA+AGG 0.603372 1_3:-5373449 Msa0099270:intron
GCTGAAGATTATTTATACCG+TGG 0.605663 1_3:+5392055 None:intergenic
GGCCTATTGGAGGATGTACA+AGG 0.608838 1_3:-5380561 Msa0099270:CDS
TCTGAATACATTCTTCGAGT+GGG 0.609755 1_3:+5383294 None:intergenic
TCCGGATAAGGAAGTAGCGT+GGG 0.612474 1_3:-5391875 Msa0099270:CDS
ACGAAACGATTGAGAAACTG+AGG 0.614171 1_3:-5377999 Msa0099270:CDS
TCCTATTAGATGATGATCTG+AGG 0.615580 1_3:-5371109 Msa0099270:intron
GAAATTGAATACCCTTTCAG+AGG 0.615990 1_3:+5387951 None:intergenic
AAATGAGGAAGCTTGGTGAA+GGG 0.616712 1_3:+5389508 None:intergenic
TGGTAGCAAAGGGAAAAGAC+CGG 0.616823 1_3:+5384140 None:intergenic
AAATCATCTAGATCTCCTGT+TGG 0.617366 1_3:-5373414 Msa0099270:CDS
GTGTAATAAATGTCCTCAGT+TGG 0.617399 1_3:+5381709 None:intergenic
TCTAATAGGAAAGAATTAGA+GGG 0.617650 1_3:+5371122 None:intergenic
GTAATAATCATACCGGACAA+AGG 0.625573 1_3:+5371866 None:intergenic
CTCGGGCGAATACTCTTACG+TGG 0.625694 1_3:+5377651 None:intergenic
CTTTGCTATAGACATATACA+GGG 0.630629 1_3:-5389552 Msa0099270:intron
AGTTTACGAATGAAGAAGGA+TGG 0.631163 1_3:+5372430 None:intergenic
GTCATCAGCAGATAGGCACC+AGG 0.633598 1_3:-5377233 Msa0099270:intron
AGTTGTGCAGATAACGGACC+CGG 0.633966 1_3:-5388007 Msa0099270:CDS
ATATGGTTATCATACAAATG+AGG 0.634040 1_3:+5389493 None:intergenic
GAATGTTGCACATTCTCCAA+CGG 0.634835 1_3:-5372222 Msa0099270:CDS
ATATACGTATGAGGCTAACA+AGG 0.634845 1_3:-5380957 Msa0099270:CDS
CTACTATAAATACACCAAAG+AGG 0.635414 1_3:+5370631 None:intergenic
AGAATACATAAAGACGAGGA+GGG 0.636447 1_3:-5387687 Msa0099270:CDS
TGTGGGCTAAGCTCACCCAA+TGG 0.637090 1_3:+5389448 None:intergenic
AGTCAATCTATCTTGGTAAG+CGG 0.637842 1_3:-5389261 Msa0099270:CDS
ATCATACACCAATTACGCTG+TGG 0.639547 1_3:-5383786 Msa0099270:CDS
TCTCGTCCAGATCTATAGGA+GGG 0.640006 1_3:+5370940 None:intergenic
TCGAGAAGGAAATATTGTCA+AGG 0.640008 1_3:-5386733 Msa0099270:CDS
GTGTGATGTAGACCTACTGC+TGG 0.641029 1_3:-5386784 Msa0099270:CDS
TGTGCAGGTTTCTAATGATG+AGG 0.641882 1_3:-5379797 Msa0099270:intron
ACTTATTAAATGCAGCCTTG+AGG 0.642071 1_3:-5377733 Msa0099270:intron
CAGGACCAAAGTATTTCTCA+GGG 0.642249 1_3:-5381802 Msa0099270:CDS
TTTGTTGGTGGTCGTACCGG+TGG 0.644207 1_3:-5389183 Msa0099270:CDS
GGAATCAGTTACAAGATGAA+CGG 0.645704 1_3:+5391819 None:intergenic
TTAGACACCCAAAACAGGAA+GGG 0.648364 1_3:-5373448 Msa0099270:intron
GTTGCTAGTCATGATGTCAA+AGG 0.649997 1_3:-5370768 Msa0099270:three_prime_UTR
GGGATTTCTCTCAGTGCGGG+AGG 0.650833 1_3:+5377417 None:intergenic
TTCACACATCGTATGTAATG+CGG 0.656786 1_3:+5383852 None:intergenic
AAGAATACATAAAGACGAGG+AGG 0.662416 1_3:-5387688 Msa0099270:CDS
TGAGGACATTTATTACACGC+AGG 0.664316 1_3:-5381704 Msa0099270:CDS
CTGAAGAATACATAAAGACG+AGG 0.665293 1_3:-5387691 Msa0099270:CDS
AAAACAGGAAGGGCGCATGG+TGG 0.668783 1_3:-5373438 Msa0099270:CDS
TCTGAATCTTGAATTAGATG+CGG 0.669863 1_3:-5379731 Msa0099270:CDS
CAATCATCTGGCAGTCAGTG+GGG 0.674610 1_3:-5373381 Msa0099270:CDS
AGTGTATTCAGTGCCAACTG+AGG 0.675294 1_3:-5381722 Msa0099270:CDS
TTCCGGATAAGGAAGTAGCG+TGG 0.675746 1_3:-5391876 Msa0099270:CDS
GTTTAGCTAGGTAATTTGTG+GGG 0.676337 1_3:+5370710 None:intergenic
AACACAGAGTGTGTCCAATG+AGG 0.676658 1_3:-5371280 Msa0099270:intron
CGTGTTGCTCAACCCAACCA+CGG 0.677667 1_3:-5392072 Msa0099270:five_prime_UTR
TCAACGATGAATGTACGCAA+AGG 0.678833 1_3:-5391913 Msa0099270:exon
TATTGTAGGCATCAGTCACG+AGG 0.683286 1_3:-5387657 Msa0099270:CDS
GCACGACTCATCAGTAACGA+AGG 0.687005 1_3:-5387453 Msa0099270:CDS
TGCACAATGTTGCCAGCAGT+AGG 0.688846 1_3:+5386772 None:intergenic
CGAAACGATTGAGAAACTGA+GGG 0.694987 1_3:-5377998 Msa0099270:CDS
CAACGCACTTTCTCACAGCG+CGG 0.703031 1_3:-5392002 Msa0099270:five_prime_UTR
ATACGGGATTTCTCTCAGTG+CGG 0.706904 1_3:+5377413 None:intergenic
TGATGATGGTATGTCTCACG+TGG 0.707410 1_3:-5374276 Msa0099270:CDS
TGGCAATACAATGTCTATGG+CGG 0.712149 1_3:-5380502 Msa0099270:CDS
CATACACCAATTACGCTGTG+GGG 0.730544 1_3:-5383784 Msa0099270:intron
TGATGGTATGTCTCACGTGG+AGG 0.752403 1_3:-5374273 Msa0099270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr1_3:5385483-5385502 Msa0099270:intron 0.0%
!! ATATATATATATATATATAT+GGG - chr1_3:5385482-5385501 Msa0099270:intron 0.0%
!!! AATAATGAGTTATTTTTTAA+TGG + chr1_3:5371910-5371929 None:intergenic 10.0%
!!! GATACTTTTATTTTTTTTTT+TGG - chr1_3:5372049-5372068 Msa0099270:CDS 10.0%
!!! TTTTTGGTAATTAAAAATTT+AGG - chr1_3:5372065-5372084 Msa0099270:CDS 10.0%
!! AATAATAAAATAGTATCATA+CGG + chr1_3:5372434-5372453 None:intergenic 10.0%
!!! TTTTATTATTTTCATTTATG+AGG - chr1_3:5372444-5372463 Msa0099270:intron 10.0%
!!! TTTTTTGTAAATTTTTTTAG+GGG + chr1_3:5373721-5373740 None:intergenic 10.0%
!!! CTTTTTTTGTAAATTTTTTT+AGG + chr1_3:5373723-5373742 None:intergenic 10.0%
!!! TTTTATTTGATTTTGTATTT+TGG - chr1_3:5374652-5374671 Msa0099270:intron 10.0%
!!! TTTATTTGATTTTGTATTTT+GGG - chr1_3:5374653-5374672 Msa0099270:intron 10.0%
!!! TTTTACTTTGATTTAAATAA+TGG + chr1_3:5374833-5374852 None:intergenic 10.0%
!!! AAACTAAAATCTTTTTTTTT+TGG + chr1_3:5376480-5376499 None:intergenic 10.0%
!!! AAAGAAAAAAACAATTTTTT+AGG - chr1_3:5377178-5377197 Msa0099270:intron 10.0%
!!! TTTTATGTTGTTAATTATTT+TGG - chr1_3:5378621-5378640 Msa0099270:intron 10.0%
!!! TACAACTTATAATATATTTT+TGG - chr1_3:5379004-5379023 Msa0099270:intron 10.0%
!!! TTAGTTTAAATAAAAGTATT+AGG - chr1_3:5379388-5379407 Msa0099270:intron 10.0%
!! TTATATATAGAAAACTAAAT+AGG + chr1_3:5379487-5379506 None:intergenic 10.0%
!! ATACAAAATCAATAAAAATA+TGG + chr1_3:5380354-5380373 None:intergenic 10.0%
!!! ATTTTTCTTAATTTTTACTA+TGG - chr1_3:5382474-5382493 Msa0099270:intron 10.0%
!!! TTTTTCTTAATTTTTACTAT+GGG - chr1_3:5382475-5382494 Msa0099270:intron 10.0%
!!! ATATAGATTTTATATTGATT+CGG + chr1_3:5389479-5389498 None:intergenic 10.0%
!! AAAATTAAAAATGAAATCTA+AGG + chr1_3:5389520-5389539 None:intergenic 10.0%
!!! ATTTTTAATTTTCTTTTGAA+TGG - chr1_3:5389528-5389547 Msa0099270:CDS 10.0%
!!! AATTTTTCGTAATTTTCTAT+CGG - chr1_3:5371137-5371156 Msa0099270:CDS 15.0%
!!! TTTTTGTAAATTTTTTTAGG+GGG + chr1_3:5373720-5373739 None:intergenic 15.0%
!! ATGAACAATTATAATTTCAA+TGG + chr1_3:5374425-5374444 None:intergenic 15.0%
!!! TTATTTGATTTTGTATTTTG+GGG - chr1_3:5374654-5374673 Msa0099270:intron 15.0%
!!! TTTTTTTATTATGCATTGTT+GGG - chr1_3:5375971-5375990 Msa0099270:intron 15.0%
!! ACAAACTAAAATCTAATAAT+AGG + chr1_3:5376449-5376468 None:intergenic 15.0%
!!! TGAGTTTTTTTAACATTAAT+TGG - chr1_3:5378028-5378047 Msa0099270:CDS 15.0%
!! ACTGATATGATATAAAAAAA+AGG + chr1_3:5379429-5379448 None:intergenic 15.0%
!! AATAAAAAAAATTGCAATGT+AGG + chr1_3:5380044-5380063 None:intergenic 15.0%
!! TTGAAATCAAATTAATCATA+TGG + chr1_3:5381240-5381259 None:intergenic 15.0%
!!! ATTAATTTGATTTCAAATTG+TGG - chr1_3:5381244-5381263 Msa0099270:intron 15.0%
!!! TTAATTTGATTTCAAATTGT+GGG - chr1_3:5381245-5381264 Msa0099270:intron 15.0%
!!! TTTTCTTAATTTTTACTATG+GGG - chr1_3:5382476-5382495 Msa0099270:intron 15.0%
!!! TATAACTATTTCATTTTATG+AGG - chr1_3:5382543-5382562 Msa0099270:intron 15.0%
!! CTATATCATAAAATATAGAA+AGG + chr1_3:5383177-5383196 None:intergenic 15.0%
!!! ATACTTTCACTTTTAATTAT+AGG + chr1_3:5384213-5384232 None:intergenic 15.0%
!! TATAATTAAAAGTGAAAGTA+TGG - chr1_3:5384212-5384231 Msa0099270:CDS 15.0%
!!! AGAACATAACTTTTTAAATT+AGG + chr1_3:5384792-5384811 None:intergenic 15.0%
!!! TATTAAAGATCTTATTTGTA+TGG + chr1_3:5385042-5385061 None:intergenic 15.0%
!!! TGTTTTAAATTGTATAGTTT+TGG - chr1_3:5385379-5385398 Msa0099270:intron 15.0%
!!! AATATTTTTTATCTTCATGA+TGG - chr1_3:5385585-5385604 Msa0099270:intron 15.0%
!! TTCAATAATGTAATCAAAAA+TGG + chr1_3:5385855-5385874 None:intergenic 15.0%
!!! ATTTTTGATTACATTATTGA+AGG - chr1_3:5385854-5385873 Msa0099270:intron 15.0%
!! TTGTTGTCAATTTATAAAAT+TGG - chr1_3:5386399-5386418 Msa0099270:intron 15.0%
!! TTGATATTATCATGTAAATA+GGG + chr1_3:5387897-5387916 None:intergenic 15.0%
!!! CTTTTTTCAATATTGAAAAT+TGG + chr1_3:5387996-5388015 None:intergenic 15.0%
!!! ATTTTCAATATTGAAAAAAG+TGG - chr1_3:5387996-5388015 Msa0099270:CDS 15.0%
!! TGATATTACAATAATACATT+CGG + chr1_3:5388687-5388706 None:intergenic 15.0%
!! TATGTTTCTTAATATTTCAA+TGG - chr1_3:5389266-5389285 Msa0099270:CDS 15.0%
!! GAATCAATATAAAATCTATA+TGG - chr1_3:5389478-5389497 Msa0099270:CDS 15.0%
!! TATTAATGTAATAATCATAC+CGG + chr1_3:5390715-5390734 None:intergenic 15.0%
!! TGAAAGTTGAAAATTGAAAA+TGG + chr1_3:5370546-5370565 None:intergenic 20.0%
!!! TTATTTATGACTGTAGATTT+TGG - chr1_3:5371325-5371344 Msa0099270:CDS 20.0%
!!! CTATTTGAAAAAAGTTTTAG+TGG - chr1_3:5371350-5371369 Msa0099270:intron 20.0%
!! GCTGATAATAAATTAACTTA+TGG - chr1_3:5371376-5371395 Msa0099270:intron 20.0%
!! TTTGGTAAAAAAAATTTCAC+GGG + chr1_3:5371603-5371622 None:intergenic 20.0%
!! GTTTGGTAAAAAAAATTTCA+CGG + chr1_3:5371604-5371623 None:intergenic 20.0%
!!! TTTACCAAACAAGTTTTTTT+TGG - chr1_3:5371614-5371633 Msa0099270:intron 20.0%
!!! TTACCAAACAAGTTTTTTTT+GGG - chr1_3:5371615-5371634 Msa0099270:intron 20.0%
!!! TTGTTTTTTTTTTTGGAGTA+TGG - chr1_3:5371969-5371988 Msa0099270:intron 20.0%
!!! CATATTTAGTGAGATTTTAT+TGG - chr1_3:5373254-5373273 Msa0099270:intron 20.0%
!!! TTTTGTAAATTTTTTTAGGG+GGG + chr1_3:5373719-5373738 None:intergenic 20.0%
!!! TAACTTATAAACACATTTTC+AGG + chr1_3:5373856-5373875 None:intergenic 20.0%
!! AAAATGTGTTTATAAGTTAG+AGG - chr1_3:5373857-5373876 Msa0099270:intron 20.0%
!!! ATTGTCTTAAAATTTGAGTT+GGG + chr1_3:5373925-5373944 None:intergenic 20.0%
!! TATTGTCTTAAAATTTGAGT+TGG + chr1_3:5373926-5373945 None:intergenic 20.0%
!! TAAAGGTCCTATTAAAATAT+AGG + chr1_3:5374197-5374216 None:intergenic 20.0%
!!! ATATTTTAATAGGACCTTTA+TGG - chr1_3:5374197-5374216 Msa0099270:CDS 20.0%
!!! TAATTGTTGCATTTTGTAAT+TGG - chr1_3:5374754-5374773 Msa0099270:intron 20.0%
!!! TTAAATAATGGAAATGACTT+GGG + chr1_3:5374821-5374840 None:intergenic 20.0%
!!! TTTAAATAATGGAAATGACT+TGG + chr1_3:5374822-5374841 None:intergenic 20.0%
!! AGTAAAATCTATGAACTAAA+CGG - chr1_3:5374846-5374865 Msa0099270:intron 20.0%
!! AATATATAACTAACATTTGC+TGG - chr1_3:5375370-5375389 Msa0099270:intron 20.0%
!! AACAATATTTAGTTAGGTAT+TGG + chr1_3:5375499-5375518 None:intergenic 20.0%
!! ATGCAAAACAATATTTAGTT+AGG + chr1_3:5375505-5375524 None:intergenic 20.0%
!!! ATAAGACTACTATCTTTTTT+AGG + chr1_3:5375541-5375560 None:intergenic 20.0%
!!! GATAAAAGTACTAAATGAAT+GGG - chr1_3:5375666-5375685 Msa0099270:intron 20.0%
!!! CTTAATTTTTTTTCATCACT+AGG - chr1_3:5375765-5375784 Msa0099270:intron 20.0%
!!! GTTTTTTTATTATGCATTGT+TGG - chr1_3:5375970-5375989 Msa0099270:intron 20.0%
!! ATGTTCCATAATGTAAAATA+CGG + chr1_3:5376256-5376275 None:intergenic 20.0%
!! CAGAAGTTATAAAAAAAGAT+AGG + chr1_3:5376726-5376745 None:intergenic 20.0%
!!! ATCAATTTATTTGTTGTAAG+TGG - chr1_3:5377302-5377321 Msa0099270:CDS 20.0%
!!! TCAATTTATTTGTTGTAAGT+GGG - chr1_3:5377303-5377322 Msa0099270:CDS 20.0%
!! TAGATTTAAACATAAAACCT+AGG + chr1_3:5377476-5377495 None:intergenic 20.0%
!!! ATATTAGTCTACAAATACAT+TGG - chr1_3:5377505-5377524 Msa0099270:intron 20.0%
!!! TTATGGTTTTAGATAAAACA+AGG - chr1_3:5377572-5377591 Msa0099270:intron 20.0%
!! AAAAGTGATATAGTTTCATT+TGG - chr1_3:5377827-5377846 Msa0099270:intron 20.0%
!! TTTATAATTTCTCATTATGC+TGG - chr1_3:5378212-5378231 Msa0099270:intron 20.0%
!! TCTATAGATTCTATACAATT+TGG + chr1_3:5378578-5378597 None:intergenic 20.0%
!!! TGTTGTTAATTATTTTGGTA+TGG - chr1_3:5378626-5378645 Msa0099270:intron 20.0%
!!! GTTGTTAATTATTTTGGTAT+GGG - chr1_3:5378627-5378646 Msa0099270:intron 20.0%
!!! TTGTTAATTATTTTGGTATG+GGG - chr1_3:5378628-5378647 Msa0099270:intron 20.0%
!! AACATGTTAATTAGTAAACT+TGG - chr1_3:5378867-5378886 Msa0099270:intron 20.0%
!! TAATTGTTACATTACTCAAA+TGG - chr1_3:5378938-5378957 Msa0099270:intron 20.0%
!! TTGAAAATTTCATGCAAATA+AGG - chr1_3:5379124-5379143 Msa0099270:intron 20.0%
!! TAAACCTTATAATTTCAACA+TGG - chr1_3:5379504-5379523 Msa0099270:intron 20.0%
!! AAAAGTAATACTACATAACA+AGG + chr1_3:5380461-5380480 None:intergenic 20.0%
!! AGAAAGAAAAACAAAAAACA+AGG + chr1_3:5380737-5380756 None:intergenic 20.0%
!! ATTATATAATGACTGTCTAT+TGG - chr1_3:5380967-5380986 Msa0099270:CDS 20.0%
!! TTATATAATGACTGTCTATT+GGG - chr1_3:5380968-5380987 Msa0099270:CDS 20.0%
!!! TAATTTGATTTCAAATTGTG+GGG - chr1_3:5381246-5381265 Msa0099270:intron 20.0%
!! CTGAAATGTTTAATAAGAAT+AGG + chr1_3:5381815-5381834 None:intergenic 20.0%
!! TTTCAATATCTTTCCATTTA+TGG - chr1_3:5381920-5381939 Msa0099270:intron 20.0%
!! ATCTAAAAGAAATGATGTTA+TGG - chr1_3:5382322-5382341 Msa0099270:intron 20.0%
!! GTAAAAATTAAGAAAAATGC+AGG + chr1_3:5382472-5382491 None:intergenic 20.0%
!!! AGATTAAATTTTCAAGAATG+TGG + chr1_3:5382582-5382601 None:intergenic 20.0%
!! ATCTACCTGTATTAAAATTA+TGG + chr1_3:5382720-5382739 None:intergenic 20.0%
!! TAACATATATGATATAGGAA+TGG - chr1_3:5383224-5383243 Msa0099270:intron 20.0%
!! ACTACTAATTATAATGAGTA+AGG - chr1_3:5383272-5383291 Msa0099270:CDS 20.0%
!!! TTTTTATACAGATTAACTGA+TGG - chr1_3:5383395-5383414 Msa0099270:intron 20.0%
!! ATAGAATTTATGGCATTTAT+TGG - chr1_3:5383585-5383604 Msa0099270:intron 20.0%
!!! TATTCTTTTCCCTATAATTT+AGG - chr1_3:5383811-5383830 Msa0099270:CDS 20.0%
!! AATCAAGATCCTAAATTATA+GGG + chr1_3:5383823-5383842 None:intergenic 20.0%
!! ACTTATTTGGATTTATCTAT+GGG + chr1_3:5384376-5384395 None:intergenic 20.0%
!! AACTTATTTGGATTTATCTA+TGG + chr1_3:5384377-5384396 None:intergenic 20.0%
!!! TTTTCTTGTCTTATATTTTC+AGG - chr1_3:5384477-5384496 Msa0099270:intron 20.0%
!!! TTTTAAAGAAGGAAGAAAAA+GGG + chr1_3:5384656-5384675 None:intergenic 20.0%
!!! TTTTTAAAGAAGGAAGAAAA+AGG + chr1_3:5384657-5384676 None:intergenic 20.0%
!!! AAGTTTTAAGATGATAGAAA+AGG - chr1_3:5385547-5385566 Msa0099270:intron 20.0%
!!! AGTTTTAAGATGATAGAAAA+GGG - chr1_3:5385548-5385567 Msa0099270:intron 20.0%
!! ACAACAATAATAAAAAGTAG+AGG + chr1_3:5385925-5385944 None:intergenic 20.0%
!!! ATTTTTTGAGGTTTATTCAT+TGG - chr1_3:5386051-5386070 Msa0099270:intron 20.0%
!! ATAAACAAACACAAATTGTT+AGG + chr1_3:5387084-5387103 None:intergenic 20.0%
!! AATTTGTGTTTGTTTATCAT+TGG - chr1_3:5387087-5387106 Msa0099270:intron 20.0%
!! ATCATATTTAACATATGTCT+TGG + chr1_3:5387478-5387497 None:intergenic 20.0%
!!! AAGAAATGATTGGATTTTTT+TGG + chr1_3:5387531-5387550 None:intergenic 20.0%
!! GTTGATATTATCATGTAAAT+AGG + chr1_3:5387898-5387917 None:intergenic 20.0%
!!! TAATTCTTTGTTTTTTCTAC+TGG - chr1_3:5388033-5388052 Msa0099270:CDS 20.0%
!! ACTATATGGTAATACATTTA+AGG + chr1_3:5388106-5388125 None:intergenic 20.0%
!! AAATGTATTACCATATAGTT+TGG - chr1_3:5388107-5388126 Msa0099270:intron 20.0%
!! AATCAATAAACCAAACTATA+TGG + chr1_3:5388120-5388139 None:intergenic 20.0%
!!! AAATTTCGTATATTTTACAC+TGG - chr1_3:5388173-5388192 Msa0099270:intron 20.0%
!!! ATAAACTTAAATGGAGATTT+TGG + chr1_3:5388269-5388288 None:intergenic 20.0%
!!! AAATCTCCATTTAAGTTTAT+TGG - chr1_3:5388269-5388288 Msa0099270:intron 20.0%
!! TCATATCCAATAAACTTAAA+TGG + chr1_3:5388278-5388297 None:intergenic 20.0%
!!! TGAAGTTTACATTTTTGATT+TGG - chr1_3:5389062-5389081 Msa0099270:intron 20.0%
!! AATCATCAAAAACAATAGAT+AGG + chr1_3:5389664-5389683 None:intergenic 20.0%
!!! TTGTTTTTGATGATTAGTAT+TGG - chr1_3:5389669-5389688 Msa0099270:intron 20.0%
!!! TGTTTTTGATGATTAGTATT+GGG - chr1_3:5389670-5389689 Msa0099270:intron 20.0%
!! GTCTAATAAAATAACCAATA+TGG - chr1_3:5389791-5389810 Msa0099270:intron 20.0%
!! ATTAAACAGTGATAATTTCT+AGG - chr1_3:5390010-5390029 Msa0099270:intron 20.0%
!! TTTATGTAAGAAAAAATGTG+GGG + chr1_3:5390103-5390122 None:intergenic 20.0%
!! GTTTATGTAAGAAAAAATGT+GGG + chr1_3:5390104-5390123 None:intergenic 20.0%
!! AGTTTATGTAAGAAAAAATG+TGG + chr1_3:5390105-5390124 None:intergenic 20.0%
!! GAAATAGAAAACTAAACAAA+GGG + chr1_3:5390285-5390304 None:intergenic 20.0%
!! TGAAATAGAAAACTAAACAA+AGG + chr1_3:5390286-5390305 None:intergenic 20.0%
!!! TCAATATTTTTTTCATCACA+TGG - chr1_3:5390458-5390477 Msa0099270:intron 20.0%
!!! CAATATTTTTTTCATCACAT+GGG - chr1_3:5390459-5390478 Msa0099270:intron 20.0%
!! AATGATGAAAATTACAAATC+AGG + chr1_3:5390781-5390800 None:intergenic 20.0%
!! ATCATATTACGTACATATAT+AGG + chr1_3:5390902-5390921 None:intergenic 20.0%
! TATAACTATCACAGATAAGT+TGG - chr1_3:5371421-5371440 Msa0099270:intron 25.0%
!!! TTTTTTCAAGTAAGATGACA+AGG - chr1_3:5371547-5371566 Msa0099270:intron 25.0%
!!! TTTTTCAAGTAAGATGACAA+GGG - chr1_3:5371548-5371567 Msa0099270:intron 25.0%
!!! TACCAAACAAGTTTTTTTTG+GGG - chr1_3:5371616-5371635 Msa0099270:intron 25.0%
!!! AAATCATACACGCTTTTTTT+GGG + chr1_3:5371657-5371676 None:intergenic 25.0%
!!! AAAATCATACACGCTTTTTT+TGG + chr1_3:5371658-5371677 None:intergenic 25.0%
!! AAAGCGTGTATGATTTTTAT+TGG - chr1_3:5371661-5371680 Msa0099270:intron 25.0%
!! AAGCGTGTATGATTTTTATT+GGG - chr1_3:5371662-5371681 Msa0099270:intron 25.0%
!! GCTACATTTAAAATCATACA+AGG + chr1_3:5371731-5371750 None:intergenic 25.0%
! AACTCATTATTGTTGTAAAC+TGG - chr1_3:5371919-5371938 Msa0099270:intron 25.0%
! AGTTCAATGTTGTTAAATAG+AGG - chr1_3:5372497-5372516 Msa0099270:intron 25.0%
!! TAAAACTTTATTCTCCCTTT+TGG - chr1_3:5372885-5372904 Msa0099270:intron 25.0%
! ATCAAGTAAAATAGCCAAAA+GGG + chr1_3:5372902-5372921 None:intergenic 25.0%
! ATATGGTTATCATACAAATG+AGG + chr1_3:5373081-5373100 None:intergenic 25.0%
! TTTGTATGATAACCATATGA+TGG - chr1_3:5373083-5373102 Msa0099270:intron 25.0%
!!! ATGCAATATCTTACTTTTGT+TGG - chr1_3:5373373-5373392 Msa0099270:CDS 25.0%
! GATACTAAAAAACTGAAACT+TGG + chr1_3:5373499-5373518 None:intergenic 25.0%
!!! TCAGTTTTTTAGTATCAGTA+TGG - chr1_3:5373503-5373522 Msa0099270:intron 25.0%
!!! CAGTTTTTTAGTATCAGTAT+GGG - chr1_3:5373504-5373523 Msa0099270:intron 25.0%
! GACTTGAAAATGTGTATAAT+CGG - chr1_3:5374064-5374083 Msa0099270:intron 25.0%
! ACTTGAAAATGTGTATAATC+GGG - chr1_3:5374065-5374084 Msa0099270:intron 25.0%
!!! GGTTCAACCTATATTTTAAT+AGG - chr1_3:5374131-5374150 Msa0099270:intron 25.0%
!!! TTCGTTTTTCTTTAGATATG+TGG - chr1_3:5374326-5374345 Msa0099270:intron 25.0%
!!! TCGTTTTTCTTTAGATATGT+GGG - chr1_3:5374327-5374346 Msa0099270:intron 25.0%
!!! AACCTATTACTGTGTTTTTT+TGG - chr1_3:5374445-5374464 Msa0099270:intron 25.0%
! AACCAAAAAAACACAGTAAT+AGG + chr1_3:5374450-5374469 None:intergenic 25.0%
! GAAATTCAGTTTGATAGAAA+TGG - chr1_3:5374493-5374512 Msa0099270:intron 25.0%
!! TTCTAATAAGTAAGTTCTGA+TGG + chr1_3:5374536-5374555 None:intergenic 25.0%
!! TTTTGTCTATATACACTACA+AGG + chr1_3:5375352-5375371 None:intergenic 25.0%
! CGAATTATTTGAACTTAGTT+GGG + chr1_3:5375457-5375476 None:intergenic 25.0%
! TCGAATTATTTGAACTTAGT+TGG + chr1_3:5375458-5375477 None:intergenic 25.0%
!!! CGATAAAAGTACTAAATGAA+TGG - chr1_3:5375665-5375684 Msa0099270:intron 25.0%
! TACTAAATGAATGGGATTAT+TGG - chr1_3:5375674-5375693 Msa0099270:intron 25.0%
! TAAGTCATTAACTTTAGCAA+AGG + chr1_3:5375749-5375768 None:intergenic 25.0%
! TTTATGCTCGTTTATTTGAT+TGG - chr1_3:5375912-5375931 Msa0099270:intron 25.0%
!!! ATTGGAGTTTTGGATATTTA+TGG - chr1_3:5376082-5376101 Msa0099270:intron 25.0%
! TGCAATACTTTAGTTGATTA+TGG - chr1_3:5376214-5376233 Msa0099270:intron 25.0%
! CATAGATGATACTAATGAAA+AGG + chr1_3:5376389-5376408 None:intergenic 25.0%
! TCTAATAATAGGAATAGCAA+TGG + chr1_3:5376438-5376457 None:intergenic 25.0%
!! TGTTCTAGATTTGATTGAAA+AGG - chr1_3:5376844-5376863 Msa0099270:CDS 25.0%
! GATAGTAGATGGATAAATAA+AGG + chr1_3:5376985-5377004 None:intergenic 25.0%
! ACAAATAAATTGATGAAGCA+CGG + chr1_3:5377296-5377315 None:intergenic 25.0%
! AATCATAGTTGTTGAAGTTA+TGG - chr1_3:5377555-5377574 Msa0099270:intron 25.0%
! ATAACACTAATTCATGTCTA+TGG - chr1_3:5377646-5377665 Msa0099270:CDS 25.0%
! CCTGATTTCTCTATTTATTT+AGG + chr1_3:5377690-5377709 None:intergenic 25.0%
! CCTAAATAAATAGAGAAATC+AGG - chr1_3:5377687-5377706 Msa0099270:CDS 25.0%
!!! TAATCTTAAGAGTATCTTCT+AGG + chr1_3:5377756-5377775 None:intergenic 25.0%
! CATGATTATTGTTAGTATCT+TGG + chr1_3:5377801-5377820 None:intergenic 25.0%
! CAAGATACTAACAATAATCA+TGG - chr1_3:5377799-5377818 Msa0099270:intron 25.0%
! AATGAGTAATCGAAAATTAC+AGG + chr1_3:5377934-5377953 None:intergenic 25.0%
!!! AATGTTTCATGTGTTGATTT+TGG + chr1_3:5378122-5378141 None:intergenic 25.0%
!!! AATATATTTTTGGTCATCAG+TGG - chr1_3:5379014-5379033 Msa0099270:intron 25.0%
! AAGTGAAAAAACCACTAATA+CGG + chr1_3:5379067-5379086 None:intergenic 25.0%
!! AATTTTCAATCAAGTTCACA+CGG + chr1_3:5379113-5379132 None:intergenic 25.0%
!! TCACAATCTCTATTTTATTC+AGG - chr1_3:5379216-5379235 Msa0099270:intron 25.0%
!! CACAATCTCTATTTTATTCA+GGG - chr1_3:5379217-5379236 Msa0099270:intron 25.0%
! ATCACCATGTTGAAATTATA+AGG + chr1_3:5379511-5379530 None:intergenic 25.0%
! TCCCATGAAAGAAAAAAATT+GGG + chr1_3:5379929-5379948 None:intergenic 25.0%
! ATCCCATGAAAGAAAAAAAT+TGG + chr1_3:5379930-5379949 None:intergenic 25.0%
! AAAAAAATTGCAATGTAGGA+TGG + chr1_3:5380040-5380059 None:intergenic 25.0%
! AATCAGAGAAGAATAAAGAA+AGG + chr1_3:5380096-5380115 None:intergenic 25.0%
! AACGAATTCAAGTCATAAAT+TGG + chr1_3:5380225-5380244 None:intergenic 25.0%
!!! CTTTTTTCCATACATAAACT+AGG - chr1_3:5380680-5380699 Msa0099270:intron 25.0%
! TGATATTCCTAGTTTATGTA+TGG + chr1_3:5380690-5380709 None:intergenic 25.0%
! ATATCAAAGTGTGACTTTAA+TGG - chr1_3:5380704-5380723 Msa0099270:intron 25.0%
! TATCAAAGTGTGACTTTAAT+GGG - chr1_3:5380705-5380724 Msa0099270:intron 25.0%
!! TTTTTCTTTCTTGTTCAGTT+GGG - chr1_3:5380746-5380765 Msa0099270:intron 25.0%
! TTGATGAATTTGTGTTTAGT+TGG - chr1_3:5381396-5381415 Msa0099270:intron 25.0%
!! CATACGTATATACTTTTGAA+TGG + chr1_3:5381605-5381624 None:intergenic 25.0%
!! TTCAAAAGTATATACGTATG+AGG - chr1_3:5381605-5381624 Msa0099270:intron 25.0%
! AATATCTTTCCATTTATGGT+TGG - chr1_3:5381924-5381943 Msa0099270:intron 25.0%
! ATATGTAACACCGATATTAT+AGG - chr1_3:5381989-5382008 Msa0099270:intron 25.0%
!!! TTTTTTTTTCCCCTTTTGAT+AGG - chr1_3:5382136-5382155 Msa0099270:intron 25.0%
! TAGAACAACATATGTTACAT+TGG + chr1_3:5382166-5382185 None:intergenic 25.0%
!! AATTTTTGTTCACTTTCTTC+AGG - chr1_3:5382194-5382213 Msa0099270:intron 25.0%
! TGCATCTAGAAAAGAAAATA+AGG - chr1_3:5382292-5382311 Msa0099270:intron 25.0%
! GCATCTAGAAAAGAAAATAA+GGG - chr1_3:5382293-5382312 Msa0099270:intron 25.0%
! AAAAGAAATGATGTTATGGA+TGG - chr1_3:5382326-5382345 Msa0099270:intron 25.0%
! AAAGAAATGATGTTATGGAT+GGG - chr1_3:5382327-5382346 Msa0099270:intron 25.0%
!! AGGTTACATTTTACAAAAGT+AGG + chr1_3:5382621-5382640 None:intergenic 25.0%
!!! AAGCACCATAATTTTAATAC+AGG - chr1_3:5382712-5382731 Msa0099270:intron 25.0%
!!! CTTTAAAGCAGATTTTTCTT+TGG + chr1_3:5382932-5382951 None:intergenic 25.0%
!! CATCATATTAGTCTATTGAA+AGG - chr1_3:5383054-5383073 Msa0099270:intron 25.0%
!! TTAGTCTATTGAAAGGATTT+TGG - chr1_3:5383061-5383080 Msa0099270:intron 25.0%
!!! GAATGTGAAATAGTTTGTTA+TGG + chr1_3:5383129-5383148 None:intergenic 25.0%
! TCTGCTAACATATATGATAT+AGG - chr1_3:5383219-5383238 Msa0099270:intron 25.0%
! TTTATGCTAAGTTACAGATT+TGG - chr1_3:5383295-5383314 Msa0099270:CDS 25.0%
! ATCAACAGTATCAAAGTAAA+AGG - chr1_3:5383362-5383381 Msa0099270:intron 25.0%
! TTTGTGAAGAATAAGAAAAG+AGG - chr1_3:5383449-5383468 Msa0099270:intron 25.0%
!!! AAGTTCTAAGATTTTGCATA+TGG - chr1_3:5383562-5383581 Msa0099270:intron 25.0%
! TTGCATATGGATAGAATTTA+TGG - chr1_3:5383575-5383594 Msa0099270:intron 25.0%
! TTCTTCGAATAGAACTTATA+TGG - chr1_3:5383620-5383639 Msa0099270:intron 25.0%
! ATCTAAAGGTTATTCATTAC+AGG + chr1_3:5383693-5383712 None:intergenic 25.0%
!! ATTCATGTGTTTTCATCTAA+AGG + chr1_3:5383707-5383726 None:intergenic 25.0%
! TTTAGATGAAAACACATGAA+TGG - chr1_3:5383706-5383725 Msa0099270:intron 25.0%
!! ATCTAAAACAACAGGAATAA+CGG + chr1_3:5383760-5383779 None:intergenic 25.0%
! CAATCAAGATCCTAAATTAT+AGG + chr1_3:5383824-5383843 None:intergenic 25.0%
! TTATGATAAATACACTATGC+TGG - chr1_3:5383852-5383871 Msa0099270:CDS 25.0%
! TATGATAAATACACTATGCT+GGG - chr1_3:5383853-5383872 Msa0099270:CDS 25.0%
! ATTTATGTTCCAATTTCAAG+TGG - chr1_3:5383904-5383923 Msa0099270:intron 25.0%
!! TATACCACATTTTAAACCAA+AGG + chr1_3:5383956-5383975 None:intergenic 25.0%
! TCTTTCAATATCTGTATGTT+TGG - chr1_3:5384138-5384157 Msa0099270:CDS 25.0%
! GAGCATATAAATGTTCAAAA+AGG - chr1_3:5384544-5384563 Msa0099270:intron 25.0%
!!! ACTCAGTCATTTTTTAAAGA+AGG + chr1_3:5384667-5384686 None:intergenic 25.0%
!! AACAATAAAGAGCATAGAAT+GGG + chr1_3:5384713-5384732 None:intergenic 25.0%
!! AAACAATAAAGAGCATAGAA+TGG + chr1_3:5384714-5384733 None:intergenic 25.0%
!! TTTATTGTTTGTGCTTGTTA+GGG - chr1_3:5384724-5384743 Msa0099270:intron 25.0%
! AAAGTAGTAGCTTACAAATA+CGG + chr1_3:5385178-5385197 None:intergenic 25.0%
!! TAAAAGTTTTGCTGAAACTT+GGG + chr1_3:5385417-5385436 None:intergenic 25.0%
!! TTAAAAGTTTTGCTGAAACT+TGG + chr1_3:5385418-5385437 None:intergenic 25.0%
!! AAGTTTCAGCAAAACTTTTA+AGG - chr1_3:5385417-5385436 Msa0099270:intron 25.0%
!!! GTTTTAAGATGATAGAAAAG+GGG - chr1_3:5385549-5385568 Msa0099270:intron 25.0%
!! ATAGATATCATATGTTTTGC+AGG - chr1_3:5385703-5385722 Msa0099270:intron 25.0%
! TAGATGTATCAAAGAGAATT+TGG - chr1_3:5385745-5385764 Msa0099270:intron 25.0%
! AGATGTATCAAAGAGAATTT+GGG - chr1_3:5385746-5385765 Msa0099270:intron 25.0%
!!! TGAGTTTTGACAATTTTCTT+TGG - chr1_3:5385978-5385997 Msa0099270:CDS 25.0%
!!! CATGTTTGTGTAATTTTTTG+AGG - chr1_3:5386039-5386058 Msa0099270:intron 25.0%
!! ACATAATATGACTTGCATAA+TGG + chr1_3:5386316-5386335 None:intergenic 25.0%
! AGTCATATTATGTGATTATG+TGG - chr1_3:5386323-5386342 Msa0099270:intron 25.0%
!!! TGTTTTTTGAACACATGATA+AGG - chr1_3:5386507-5386526 Msa0099270:CDS 25.0%
! AACTGAAAAATACCATTTCA+TGG - chr1_3:5386788-5386807 Msa0099270:intron 25.0%
!!! ATGTGGATTTTTAGATGATT+CGG - chr1_3:5386942-5386961 Msa0099270:intron 25.0%
!!! TTATACTTTGTACCCTTTTT+TGG + chr1_3:5387302-5387321 None:intergenic 25.0%
!! AAAAAAGGGTACAAAGTATA+AGG - chr1_3:5387301-5387320 Msa0099270:intron 25.0%
!! AAAAAGGGTACAAAGTATAA+GGG - chr1_3:5387302-5387321 Msa0099270:intron 25.0%
!!! GTTTTTTGCCTTCTTTATTT+GGG + chr1_3:5387346-5387365 None:intergenic 25.0%
!!! TGTTTTTTGCCTTCTTTATT+TGG + chr1_3:5387347-5387366 None:intergenic 25.0%
!! TTAATTTTCTTCTCTCTACT+GGG + chr1_3:5387372-5387391 None:intergenic 25.0%
!! AACAAGGAAAAGTTATTTCA+GGG - chr1_3:5387641-5387660 Msa0099270:intron 25.0%
! GCAAAATCTAGATCTATTAT+TGG + chr1_3:5387754-5387773 None:intergenic 25.0%
! TGTGTTAGAAATGATAATTG+TGG + chr1_3:5387920-5387939 None:intergenic 25.0%
! ATCATTTCTAACACACATAT+TGG - chr1_3:5387925-5387944 Msa0099270:intron 25.0%
!!! TTTTTTCTACTGGAAGAAAT+TGG - chr1_3:5388043-5388062 Msa0099270:CDS 25.0%
! ATATGGTAATACATTTAAGG+AGG + chr1_3:5388103-5388122 None:intergenic 25.0%
!!! TAGTTTTGGTGTTACTTTTA+GGG - chr1_3:5388242-5388261 Msa0099270:intron 25.0%
! AAGTTTATTGGATATGATGA+TGG - chr1_3:5388281-5388300 Msa0099270:intron 25.0%
!! CATGTGTTGAGAAAATTTTT+GGG - chr1_3:5388360-5388379 Msa0099270:intron 25.0%
! ATATAACGAACAATGTTCAA+TGG + chr1_3:5388743-5388762 None:intergenic 25.0%
! ATTGAACATTGTTCGTTATA+TGG - chr1_3:5388742-5388761 Msa0099270:intron 25.0%
!!! TTTACATTTTAGGGTACTTA+TGG + chr1_3:5388967-5388986 None:intergenic 25.0%
! AAATGTAAATTACCAAACCA+GGG + chr1_3:5389022-5389041 None:intergenic 25.0%
! TAAATGTAAATTACCAAACC+AGG + chr1_3:5389023-5389042 None:intergenic 25.0%
! GTCATAACATGAAAAAAAGA+AGG + chr1_3:5389435-5389454 None:intergenic 25.0%
!!! TTTTATATTGATTCGGTTTC+AGG + chr1_3:5389472-5389491 None:intergenic 25.0%
! TTATGTAAGAAAAAATGTGG+GGG + chr1_3:5390102-5390121 None:intergenic 25.0%
!! ACATAAACTTTTACATGTTC+AGG - chr1_3:5390116-5390135 Msa0099270:intron 25.0%
! ATTGATGAAGGAAAAAACTT+GGG + chr1_3:5390172-5390191 None:intergenic 25.0%
! TATTGATGAAGGAAAAAACT+TGG + chr1_3:5390173-5390192 None:intergenic 25.0%
! AAAACCATGATTTCATGAAT+TGG - chr1_3:5390213-5390232 Msa0099270:intron 25.0%
! AAAACCAATTCATGAAATCA+TGG + chr1_3:5390220-5390239 None:intergenic 25.0%
!!! GATTTCATGAATTGGTTTTT+TGG - chr1_3:5390221-5390240 Msa0099270:intron 25.0%
! AAACAAAGGAACACATAAAT+AGG + chr1_3:5390627-5390646 None:intergenic 25.0%
! CACTAAAAAGATAAAACTAC+AGG + chr1_3:5391054-5391073 None:intergenic 25.0%
!! TACTTGCATTTTGTTAATCA+TGG - chr1_3:5391088-5391107 Msa0099270:intron 25.0%
!! ACTTGCATTTTGTTAATCAT+GGG - chr1_3:5391089-5391108 Msa0099270:intron 25.0%
!!! CAAGCAACATATTTTTTCTT+TGG + chr1_3:5391131-5391150 None:intergenic 25.0%
!! TTGAGTCTATTAATTGATTC+AGG - chr1_3:5391318-5391337 Msa0099270:intron 25.0%
! GTTTCAGAATACAATTACTA+TGG - chr1_3:5391340-5391359 Msa0099270:intron 25.0%
! TCTAATAGGAAAGAATTAGA+GGG + chr1_3:5391452-5391471 None:intergenic 25.0%
! ATCTAATAGGAAAGAATTAG+AGG + chr1_3:5391453-5391472 None:intergenic 25.0%
! TTAGATTAATACTTCAACTC+TGG - chr1_3:5391758-5391777 Msa0099270:intron 25.0%
!! CTTTTCTATACATAGATTAC+TGG + chr1_3:5391896-5391915 None:intergenic 25.0%
! ATGTATAGAAAAGTAGAAGA+TGG - chr1_3:5391903-5391922 Msa0099270:CDS 25.0%
! TTTATGTTTGTGTTGTACAT+AGG - chr1_3:5391965-5391984 Msa0099270:five_prime_UTR 25.0%
AGATTATTTATACCGTGGTT+GGG + chr1_3:5370514-5370533 None:intergenic 30.0%
AAGATTATTTATACCGTGGT+TGG + chr1_3:5370515-5370534 None:intergenic 30.0%
! GAATTTGAAACCCTAATCTA+AGG + chr1_3:5370614-5370633 None:intergenic 30.0%
!!! ATGCTGAATTGTTGTTGTTT+TGG - chr1_3:5370804-5370823 Msa0099270:three_prime_UTR 30.0%
!! GTTGATAATTTGAGTTGTGA+CGG - chr1_3:5370835-5370854 Msa0099270:three_prime_UTR 30.0%
CGAATATTATACAAAACTCC+CGG + chr1_3:5370976-5370995 None:intergenic 30.0%
!! CGGGAGTTTTGTATAATATT+CGG - chr1_3:5370974-5370993 Msa0099270:CDS 30.0%
!! GAGTTTTGTATAATATTCGG+AGG - chr1_3:5370977-5370996 Msa0099270:CDS 30.0%
AACTCATAACCAATCAAACA+CGG + chr1_3:5371174-5371193 None:intergenic 30.0%
! AACCCCAAAAAAAACTTGTT+TGG + chr1_3:5371621-5371640 None:intergenic 30.0%
ATGTAGCTCTTTATTGTTGT+AGG - chr1_3:5371744-5371763 Msa0099270:intron 30.0%
TGTAGCTCTTTATTGTTGTA+GGG - chr1_3:5371745-5371764 Msa0099270:intron 30.0%
! ACAGTTGATATATGCTTTCT+TGG - chr1_3:5372014-5372033 Msa0099270:intron 30.0%
!! GACATTACTTTTGGTTACAT+TGG - chr1_3:5372148-5372167 Msa0099270:intron 30.0%
TTACAAATTATCCACGAACA+AGG - chr1_3:5372325-5372344 Msa0099270:intron 30.0%
! TCTTTTACTGAAGATTTGGA+TGG - chr1_3:5372467-5372486 Msa0099270:intron 30.0%
! CTTTTACTGAAGATTTGGAT+GGG - chr1_3:5372468-5372487 Msa0099270:intron 30.0%
! AGCAGCTATTTCACATTATT+TGG + chr1_3:5372599-5372618 None:intergenic 30.0%
CATCAAGTAAAATAGCCAAA+AGG + chr1_3:5372903-5372922 None:intergenic 30.0%
TTTACTTGATGAATTTCACG+TGG - chr1_3:5372912-5372931 Msa0099270:intron 30.0%
!!! GAATGGTTTTGTTTTCAACA+TGG - chr1_3:5372961-5372980 Msa0099270:intron 30.0%
ATAGCAAAGACAAATAAGTC+AGG + chr1_3:5373008-5373027 None:intergenic 30.0%
! TCTTTGCTATAGACATATAC+AGG - chr1_3:5373018-5373037 Msa0099270:intron 30.0%
! CTTTGCTATAGACATATACA+GGG - chr1_3:5373019-5373038 Msa0099270:intron 30.0%
CTTTATACTGTTCCATCATA+TGG + chr1_3:5373098-5373117 None:intergenic 30.0%
! CATATGATGGAACAGTATAA+AGG - chr1_3:5373096-5373115 Msa0099270:intron 30.0%
! TTTAGAGCAATGATGAATGA+AGG - chr1_3:5373283-5373302 Msa0099270:intron 30.0%
AGGTAAAAGTCAATCTATCT+TGG - chr1_3:5373303-5373322 Msa0099270:intron 30.0%
!! CAATATCTTACTTTTGTTGG+TGG - chr1_3:5373376-5373395 Msa0099270:CDS 30.0%
! AAGATGGAATCTAAGATCAA+AGG + chr1_3:5373671-5373690 None:intergenic 30.0%
! TCCATCTTTTGCAATTTTCT+TGG - chr1_3:5373683-5373702 Msa0099270:intron 30.0%
!! AAAAGTTGATACCTAGTGTT+TGG - chr1_3:5373738-5373757 Msa0099270:intron 30.0%
!! AAAGTTGATACCTAGTGTTT+GGG - chr1_3:5373739-5373758 Msa0099270:intron 30.0%
TATGCATTCCATGATACAAA+TGG + chr1_3:5373785-5373804 None:intergenic 30.0%
CTCGTAAAGAACTAAAGATT+TGG + chr1_3:5374006-5374025 None:intergenic 30.0%
!! AATCTTTAGTTCTTTACGAG+AGG - chr1_3:5374006-5374025 Msa0099270:intron 30.0%
AGTCATATCTCATCTAATGT+GGG + chr1_3:5374048-5374067 None:intergenic 30.0%
AAGTCATATCTCATCTAATG+TGG + chr1_3:5374049-5374068 None:intergenic 30.0%
TTAGTCAGTATCCTGATTAA+AGG - chr1_3:5374263-5374282 Msa0099270:CDS 30.0%
AAGCAGTGATAATTTCTTTC+CGG + chr1_3:5374586-5374605 None:intergenic 30.0%
! TAATTGGAATGCCTCATTTT+AGG - chr1_3:5374770-5374789 Msa0099270:intron 30.0%
! GATGCAAAGGAGTATAAATT+AGG - chr1_3:5374792-5374811 Msa0099270:intron 30.0%
! TTAATGAGTAGTTTTTGTGC+TGG - chr1_3:5374991-5375010 Msa0099270:intron 30.0%
GAAAGGAAAACTATAAGAGA+GGG + chr1_3:5375017-5375036 None:intergenic 30.0%
AGAAAGGAAAACTATAAGAG+AGG + chr1_3:5375018-5375037 None:intergenic 30.0%
ATCAAGATTTCATATGCAGA+TGG - chr1_3:5375148-5375167 Msa0099270:intron 30.0%
!!! ATCTTTTTTAGGTCGATAGT+TGG + chr1_3:5375530-5375549 None:intergenic 30.0%
TATTGCTAAGTCTAAAGAGT+TGG - chr1_3:5375558-5375577 Msa0099270:intron 30.0%
GTCTAGTCATTACATCTAAA+AGG + chr1_3:5375708-5375727 None:intergenic 30.0%
TTATTTGATTGGTATGCATG+TGG - chr1_3:5375923-5375942 Msa0099270:intron 30.0%
TTTATTGTTGCTACTCTAAC+AGG - chr1_3:5376005-5376024 Msa0099270:intron 30.0%
!!! TTATGGTTTTGAGTGCTTTA+AGG - chr1_3:5376099-5376118 Msa0099270:intron 30.0%
!! TTGAGTGCTTTAAGGATAAT+AGG - chr1_3:5376107-5376126 Msa0099270:intron 30.0%
TTTAAGGATAATAGGTAAGC+CGG - chr1_3:5376115-5376134 Msa0099270:intron 30.0%
TGTCCTAAAATAACTGAAAC+CGG + chr1_3:5376137-5376156 None:intergenic 30.0%
!!! AGTTATTTTAGGACAAAAGC+TGG - chr1_3:5376142-5376161 Msa0099270:intron 30.0%
! TCACTCCGTATTTTACATTA+TGG - chr1_3:5376248-5376267 Msa0099270:intron 30.0%
TTGTAAACTTGTACTTTCAC+TGG - chr1_3:5376341-5376360 Msa0099270:intron 30.0%
AAAGTAAGACGACATTAACT+TGG + chr1_3:5376682-5376701 None:intergenic 30.0%
AAGTTAATGTCGTCTTACTT+TGG - chr1_3:5376681-5376700 Msa0099270:intron 30.0%
ATGGCAAAGAAGAAATTAAC+TGG - chr1_3:5376792-5376811 Msa0099270:CDS 30.0%
! CAATCAAATCTAGAACATCT+TGG + chr1_3:5376841-5376860 None:intergenic 30.0%
!!! TTAGCTTTTTCGATAGTAGA+TGG + chr1_3:5376996-5377015 None:intergenic 30.0%
TGAGAAATGTTGATCAACAA+GGG + chr1_3:5377050-5377069 None:intergenic 30.0%
TTGAGAAATGTTGATCAACA+AGG + chr1_3:5377051-5377070 None:intergenic 30.0%
ACTTATATAACACTCATACG+AGG + chr1_3:5377150-5377169 None:intergenic 30.0%
CAAAGGGTTCTTTATAAAGA+AGG - chr1_3:5377397-5377416 Msa0099270:intron 30.0%
AAACATAAAACCTAGGTTGT+AGG + chr1_3:5377469-5377488 None:intergenic 30.0%
TATATGAATCCTAGATAAGC+AGG + chr1_3:5377536-5377555 None:intergenic 30.0%
AGTATCTTGGTATATCTTCT+AGG + chr1_3:5377788-5377807 None:intergenic 30.0%
! CTAAGTTGTTTCAGAATTTC+CGG - chr1_3:5378147-5378166 Msa0099270:intron 30.0%
AATTTCTCATTATGCTGGAA+AGG - chr1_3:5378217-5378236 Msa0099270:intron 30.0%
! ATATCATACAGATGCCTTTT+TGG - chr1_3:5378339-5378358 Msa0099270:intron 30.0%
! AGATTTTCACACCTTAAATC+TGG + chr1_3:5378500-5378519 None:intergenic 30.0%
GTCTTCAGTACAATATGAAA+AGG + chr1_3:5378527-5378546 None:intergenic 30.0%
TCATATTGTACTGAAGACTA+AGG - chr1_3:5378529-5378548 Msa0099270:intron 30.0%
CATATTGTACTGAAGACTAA+GGG - chr1_3:5378530-5378549 Msa0099270:intron 30.0%
!!! TTAATTATTTTGGTATGGGG+TGG - chr1_3:5378631-5378650 Msa0099270:intron 30.0%
!! ATGGAAGGTGAGTTATTTTA+AGG - chr1_3:5379341-5379360 Msa0099270:intron 30.0%
CAAACACAACTGATACAAAT+TGG - chr1_3:5379746-5379765 Msa0099270:CDS 30.0%
CAAGATTCTTGTAATGATAC+AGG + chr1_3:5379791-5379810 None:intergenic 30.0%
!!! TCCCCAATTTTTTTCTTTCA+TGG - chr1_3:5379924-5379943 Msa0099270:intron 30.0%
CCCATGAAAGAAAAAAATTG+GGG + chr1_3:5379928-5379947 None:intergenic 30.0%
!!! CCCCAATTTTTTTCTTTCAT+GGG - chr1_3:5379925-5379944 Msa0099270:intron 30.0%
TTTCTTTCATGGGATAGAAT+CGG - chr1_3:5379935-5379954 Msa0099270:intron 30.0%
TCTAACTTGAGTTATTTGGA+AGG + chr1_3:5379972-5379991 None:intergenic 30.0%
TGAGTCTAACTTGAGTTATT+TGG + chr1_3:5379976-5379995 None:intergenic 30.0%
TACTACATAACAAGGCTAAT+AGG + chr1_3:5380453-5380472 None:intergenic 30.0%
ATGGAAAAAAGCTTCATGTA+TGG + chr1_3:5380671-5380690 None:intergenic 30.0%
! GTTTTTCTTTCTTGTTCAGT+TGG - chr1_3:5380745-5380764 Msa0099270:intron 30.0%
! TGAAATTATTCCTCTGAGAA+AGG + chr1_3:5381123-5381142 None:intergenic 30.0%
GGCTTGGATTAATATATGTA+TGG - chr1_3:5381285-5381304 Msa0099270:intron 30.0%
! TGTTTCTGATCTTGTCATTA+TGG + chr1_3:5381332-5381351 None:intergenic 30.0%
ACACAAATTCATCAATGAGT+TGG + chr1_3:5381391-5381410 None:intergenic 30.0%
TGAATTTGTGTTTAGTTGGT+TGG - chr1_3:5381400-5381419 Msa0099270:intron 30.0%
ACTCAAAATATAGGGAACTT+AGG - chr1_3:5381470-5381489 Msa0099270:intron 30.0%
CTCAAAATATAGGGAACTTA+GGG - chr1_3:5381471-5381490 Msa0099270:intron 30.0%
TACAATTACCAAAACCTATG+AGG + chr1_3:5381527-5381546 None:intergenic 30.0%
!! TCATAGGTTTTGGTAATTGT+AGG - chr1_3:5381526-5381545 Msa0099270:intron 30.0%
! TTTAGCTGCATACATCTTTT+GGG + chr1_3:5381560-5381579 None:intergenic 30.0%
!! TTTTAGCTGCATACATCTTT+TGG + chr1_3:5381561-5381580 None:intergenic 30.0%
AAAAGATGTATGCAGCTAAA+AGG - chr1_3:5381560-5381579 Msa0099270:intron 30.0%
AAAGATGTATGCAGCTAAAA+GGG - chr1_3:5381561-5381580 Msa0099270:intron 30.0%
!! CTTTTTCATGCAAGAATCTT+CGG + chr1_3:5381708-5381727 None:intergenic 30.0%
CTTTGATATTGTCAAGATCA+TGG - chr1_3:5381789-5381808 Msa0099270:CDS 30.0%
! TGTATCTATCCTTTTAATCG+TGG - chr1_3:5381852-5381871 Msa0099270:intron 30.0%
AACTAAACTTGAGAAGCAAT+TGG - chr1_3:5382251-5382270 Msa0099270:intron 30.0%
! TTCCTACATCAAATGTGTTT+TGG - chr1_3:5382390-5382409 Msa0099270:intron 30.0%
! TCCTACATCAAATGTGTTTT+GGG - chr1_3:5382391-5382410 Msa0099270:intron 30.0%
AAATGATTTAAATGGCACGA+TGG - chr1_3:5382502-5382521 Msa0099270:intron 30.0%
!! TTCTAACATTTTTCGAAGCA+TGG + chr1_3:5382818-5382837 None:intergenic 30.0%
TCTGAATCTTGAATTAGATG+CGG - chr1_3:5382840-5382859 Msa0099270:intron 30.0%
AAAGGAAAATGCTATGCTAA+AGG - chr1_3:5382981-5383000 Msa0099270:intron 30.0%
GAGAGTAAAATATTTGTCAG+CGG + chr1_3:5383035-5383054 None:intergenic 30.0%
!!! GGATTTTGGATCTTGTTTTA+TGG - chr1_3:5383075-5383094 Msa0099270:intron 30.0%
! TCAAAGAAAAGTTACTGGTT+AGG - chr1_3:5383319-5383338 Msa0099270:CDS 30.0%
GCTAAGTATCTACGTAAAAT+TGG + chr1_3:5383514-5383533 None:intergenic 30.0%
! AACAGGATATCTAAAACAAC+AGG + chr1_3:5383768-5383787 None:intergenic 30.0%
ACAGTAAGAAAGATGTAAAC+AGG + chr1_3:5383785-5383804 None:intergenic 30.0%
ATGATAAATACACTATGCTG+GGG - chr1_3:5383854-5383873 Msa0099270:CDS 30.0%
TTAAACCAAAGGATTGTCTA+AGG + chr1_3:5383945-5383964 None:intergenic 30.0%
! CAATCCTTTGGTTTAAAATG+TGG - chr1_3:5383949-5383968 Msa0099270:intron 30.0%
! AGAGCCTTTAAAGACTATTT+GGG + chr1_3:5383988-5384007 None:intergenic 30.0%
ACTATTAGAATAGGTTGTTC+AGG + chr1_3:5384020-5384039 None:intergenic 30.0%
TCTCTGATCACTATTAGAAT+AGG + chr1_3:5384029-5384048 None:intergenic 30.0%
AAACTACTATTTGTCGCATT+AGG - chr1_3:5384088-5384107 Msa0099270:CDS 30.0%
! ATTAGGAGAAAGTTTAGGTT+TGG - chr1_3:5384105-5384124 Msa0099270:CDS 30.0%
TGGCTTATGAACAACTTATT+TGG + chr1_3:5384389-5384408 None:intergenic 30.0%
AGAACAGAAAACAAACAAAC+AGG + chr1_3:5384437-5384456 None:intergenic 30.0%
AAAATGACTGAGTTACTGAA+TGG - chr1_3:5384674-5384693 Msa0099270:intron 30.0%
! ACAATAAAGAGCATAGAATG+GGG + chr1_3:5384712-5384731 None:intergenic 30.0%
CTTTATTGTTTGTGCTTGTT+AGG - chr1_3:5384723-5384742 Msa0099270:intron 30.0%
AAAAAGACTTAGCAAAACTC+GGG + chr1_3:5384940-5384959 None:intergenic 30.0%
GAAAAAGACTTAGCAAAACT+CGG + chr1_3:5384941-5384960 None:intergenic 30.0%
AAGTAGTAGCTTACAAATAC+GGG + chr1_3:5385177-5385196 None:intergenic 30.0%
!! AAAGAGGTAGTAAGTTTTGT+GGG + chr1_3:5385285-5385304 None:intergenic 30.0%
! AAAAGAGGTAGTAAGTTTTG+TGG + chr1_3:5385286-5385305 None:intergenic 30.0%
!! GTGAATAATGTGGTTCTAAA+TGG + chr1_3:5385654-5385673 None:intergenic 30.0%
! GAGAATTTGGGATTCAAAAA+TGG - chr1_3:5385758-5385777 Msa0099270:intron 30.0%
TATACAAATGTCTTCTTCAC+TGG - chr1_3:5385804-5385823 Msa0099270:intron 30.0%
ATGATATTGTCTTGCCATAT+TGG - chr1_3:5386100-5386119 Msa0099270:intron 30.0%
!! ATTTAGTTCTGTCTAAAACG+AGG - chr1_3:5386372-5386391 Msa0099270:intron 30.0%
!! TTTAGTTCTGTCTAAAACGA+GGG - chr1_3:5386373-5386392 Msa0099270:intron 30.0%
GTCAATTTATAAAATTGGCC+TGG - chr1_3:5386404-5386423 Msa0099270:intron 30.0%
AAGCACATAGAAGAATAACA+AGG - chr1_3:5386554-5386573 Msa0099270:intron 30.0%
CAAAGGAAAAGAGAAAATAG+AGG - chr1_3:5386654-5386673 Msa0099270:intron 30.0%
AAAAGAGAAAATAGAGGTCA+AGG - chr1_3:5386660-5386679 Msa0099270:CDS 30.0%
GAAAAATACCATTTCATGGT+TGG - chr1_3:5386792-5386811 Msa0099270:intron 30.0%
AAAAATCCACATGTGAGTTT+GGG + chr1_3:5386934-5386953 None:intergenic 30.0%
TAAAAATCCACATGTGAGTT+TGG + chr1_3:5386935-5386954 None:intergenic 30.0%
!!! GCTGTTTTTAGGATTTTAAC+AGG + chr1_3:5387027-5387046 None:intergenic 30.0%
! AAAAGGGTACAAAGTATAAG+GGG - chr1_3:5387303-5387322 Msa0099270:intron 30.0%
! GTTAATTTTCTTCTCTCTAC+TGG + chr1_3:5387373-5387392 None:intergenic 30.0%
GCATTAGCCATTCATAAAAA+AGG - chr1_3:5387417-5387436 Msa0099270:CDS 30.0%
!!! TACCTTGCCTTTTTTATGAA+TGG + chr1_3:5387427-5387446 None:intergenic 30.0%
TTTAACATATGTCTTGGCAA+TGG + chr1_3:5387472-5387491 None:intergenic 30.0%
TTTGGAAGACAAGAAATGAT+TGG + chr1_3:5387541-5387560 None:intergenic 30.0%
! TTTTCTTTCCTTCCTTTTTC+CGG - chr1_3:5387598-5387617 Msa0099270:intron 30.0%
!!! CAAATTTGGTGTCTTTTTTC+CGG + chr1_3:5387620-5387639 None:intergenic 30.0%
! ACTTTTCCTTGTTCCAAATT+TGG + chr1_3:5387634-5387653 None:intergenic 30.0%
! GAACAAGGAAAAGTTATTTC+AGG - chr1_3:5387640-5387659 Msa0099270:intron 30.0%
CATGTTTAGAGAGAGAAAAT+GGG - chr1_3:5387782-5387801 Msa0099270:CDS 30.0%
!! TATTTTACACTGGTTGACAT+TGG - chr1_3:5388183-5388202 Msa0099270:intron 30.0%
AGGAGGAAGATATAATACAA+GGG + chr1_3:5388217-5388236 None:intergenic 30.0%
!!! GTAGTTTTGGTGTTACTTTT+AGG - chr1_3:5388241-5388260 Msa0099270:intron 30.0%
! GCATGTGTTGAGAAAATTTT+TGG - chr1_3:5388359-5388378 Msa0099270:intron 30.0%
! TGTACTCTTAGTTGATACTT+TGG - chr1_3:5388448-5388467 Msa0099270:intron 30.0%
CAATGTTTGAACAATTGACA+AGG + chr1_3:5388497-5388516 None:intergenic 30.0%
AAACATTGTGATTCAGTTCT+TGG - chr1_3:5388509-5388528 Msa0099270:intron 30.0%
AGATCTTCTCTTGATTACAA+TGG + chr1_3:5388537-5388556 None:intergenic 30.0%
!!! ACACTATTCTGTTTTTATGC+TGG - chr1_3:5388590-5388609 Msa0099270:intron 30.0%
!!! CACTATTCTGTTTTTATGCT+GGG - chr1_3:5388591-5388610 Msa0099270:intron 30.0%
!!! AAAGCAATTCAGACTAGTTT+TGG + chr1_3:5388657-5388676 None:intergenic 30.0%
ATTGCAAATCCTTGTGTTTA+TGG + chr1_3:5388921-5388940 None:intergenic 30.0%
TACCCTAAAATGTAAACAAC+TGG - chr1_3:5388971-5388990 Msa0099270:intron 30.0%
! TGCCAGTTGTTTACATTTTA+GGG + chr1_3:5388976-5388995 None:intergenic 30.0%
ATAACTTAGATTCTATACCC+TGG - chr1_3:5389002-5389021 Msa0099270:CDS 30.0%
! TTTTATTAGACACCCAAAAC+AGG - chr1_3:5389118-5389137 Msa0099270:intron 30.0%
TCACTAGATCATGATGAAAA+TGG + chr1_3:5389331-5389350 None:intergenic 30.0%
ATCTATATCCATACACCTAT+AGG - chr1_3:5389350-5389369 Msa0099270:intron 30.0%
ATTAAACTCCTATAGGTGTA+TGG + chr1_3:5389361-5389380 None:intergenic 30.0%
ACAGTGAATTAAACTCCTAT+AGG + chr1_3:5389368-5389387 None:intergenic 30.0%
AAAACAATAGATAGGCTTGA+AGG + chr1_3:5389656-5389675 None:intergenic 30.0%
TTCCACATAGAATAGAGATA+AGG - chr1_3:5389704-5389723 Msa0099270:intron 30.0%
AACCTTATCTCTATTCTATG+TGG + chr1_3:5389709-5389728 None:intergenic 30.0%
! GAAACTGACTTATAAAGTGA+GGG + chr1_3:5389756-5389775 None:intergenic 30.0%
CTTTATAAGTCAGTTTCGTA+AGG - chr1_3:5389759-5389778 Msa0099270:intron 30.0%
TCCTTTATGCTTTGTAGTTA+GGG - chr1_3:5389948-5389967 Msa0099270:intron 30.0%
AACAAGTTTACGAATGAAGA+AGG + chr1_3:5390148-5390167 None:intergenic 30.0%
! GAAGAGTGTAATATTGATGA+AGG + chr1_3:5390184-5390203 None:intergenic 30.0%
TCAATATTACACTCTTCAAC+AGG - chr1_3:5390187-5390206 Msa0099270:intron 30.0%
AGATTTCATATATTCACCGT+TGG + chr1_3:5390368-5390387 None:intergenic 30.0%
AACGGTGAATATATGAAATC+TGG - chr1_3:5390367-5390386 Msa0099270:intron 30.0%
AATTATATAAGGCAAGCTGT+TGG - chr1_3:5390535-5390554 Msa0099270:intron 30.0%
CTAGATGTTCAACAAAAACA+AGG + chr1_3:5390580-5390599 None:intergenic 30.0%
! TTCCTTTGTTTGAACTATAC+AGG - chr1_3:5390636-5390655 Msa0099270:intron 30.0%
TACCTGTATAGTTCAAACAA+AGG + chr1_3:5390641-5390660 None:intergenic 30.0%
TCAGAAGAGGAAAAAATCAT+TGG - chr1_3:5390666-5390685 Msa0099270:intron 30.0%
ATAAACTCAATACAAGTAGC+AGG + chr1_3:5390969-5390988 None:intergenic 30.0%
! CTTGCATTTTGTTAATCATG+GGG - chr1_3:5391090-5391109 Msa0099270:intron 30.0%
! TTTTGTTAATCATGGGGTTT+TGG - chr1_3:5391096-5391115 Msa0099270:intron 30.0%
!!! GCAACATATTTTTTCTTTGG+AGG + chr1_3:5391128-5391147 None:intergenic 30.0%
! TTTTCCAATCTTATATGCTC+AGG + chr1_3:5391188-5391207 None:intergenic 30.0%
TGAGCATATAAGATTGGAAA+AGG - chr1_3:5391187-5391206 Msa0099270:intron 30.0%
! CTTAGAGATTTTCTTTCAAC+AGG - chr1_3:5391210-5391229 Msa0099270:intron 30.0%
!! TTAGAGTTCTGAACCATATA+TGG - chr1_3:5391371-5391390 Msa0099270:intron 30.0%
CAAGTTAAAAGAACTTGGAT+GGG + chr1_3:5391501-5391520 None:intergenic 30.0%
AATATTCAGACACGAATACT+GGG + chr1_3:5391664-5391683 None:intergenic 30.0%
! GTAGTTGACTTACAATTTCT+TGG - chr1_3:5391715-5391734 Msa0099270:intron 30.0%
CTACTATAAATACACCAAAG+AGG + chr1_3:5391943-5391962 None:intergenic 30.0%
!! CTCAAATTTTTGCTTTTACC+TGG - chr1_3:5392068-5392087 Msa0099270:five_prime_UTR 30.0%
! AAAAGCGTAAAGTCGAAAAC+TGG - chr1_3:5370458-5370477 Msa0099270:three_prime_UTR 35.0%
GCTGAAGATTATTTATACCG+TGG + chr1_3:5370519-5370538 None:intergenic 35.0%
ACACTTCAACTCCTTAGATT+AGG - chr1_3:5370600-5370619 Msa0099270:three_prime_UTR 35.0%
CACTTCAACTCCTTAGATTA+GGG - chr1_3:5370601-5370620 Msa0099270:three_prime_UTR 35.0%
GGAATCAGTTACAAGATGAA+CGG + chr1_3:5370755-5370774 None:intergenic 35.0%
! GTTCATCTTGTAACTGATTC+CGG - chr1_3:5370754-5370773 Msa0099270:three_prime_UTR 35.0%
TCTCTCAAACACAATTTCTC+CGG + chr1_3:5370892-5370911 None:intergenic 35.0%
GAAATTGTGTTTGAGAGATG+CGG - chr1_3:5370894-5370913 Msa0099270:CDS 35.0%
! GTTGACTTACTTGAATGAAC+CGG - chr1_3:5370954-5370973 Msa0099270:CDS 35.0%
TTGACTTACTTGAATGAACC+GGG - chr1_3:5370955-5370974 Msa0099270:CDS 35.0%
CTGATTGAATTTGCAGTGTT+TGG - chr1_3:5371453-5371472 Msa0099270:intron 35.0%
! TTTGGCAATGCTAGATTTTG+AGG + chr1_3:5371703-5371722 None:intergenic 35.0%
AAATCATACAAGGCTCTGTT+TGG + chr1_3:5371721-5371740 None:intergenic 35.0%
GTAGCTCTTTATTGTTGTAG+GGG - chr1_3:5371746-5371765 Msa0099270:intron 35.0%
TAGCTCTTTATTGTTGTAGG+GGG - chr1_3:5371747-5371766 Msa0099270:intron 35.0%
!!! TTGTAAACTGGTTTTTTGCG+TGG - chr1_3:5371931-5371950 Msa0099270:intron 35.0%
TGAATAAGAGAGAGAGAGAT+AGG - chr1_3:5372239-5372258 Msa0099270:CDS 35.0%
GACTCAGAGAATGTTTATAG+AGG - chr1_3:5372299-5372318 Msa0099270:intron 35.0%
! CAAGGTTCTAACGTTAACAT+CGG - chr1_3:5372343-5372362 Msa0099270:intron 35.0%
! AAGGTTCTAACGTTAACATC+GGG - chr1_3:5372344-5372363 Msa0099270:intron 35.0%
! AGTTGATTCATACACCACAA+GGG + chr1_3:5372383-5372402 None:intergenic 35.0%
! AAGTTGATTCATACACCACA+AGG + chr1_3:5372384-5372403 None:intergenic 35.0%
! GAGGTCTTTTACTGAAGATT+TGG - chr1_3:5372463-5372482 Msa0099270:intron 35.0%
GCTATAGTACTGTTGCATAA+CGG - chr1_3:5372616-5372635 Msa0099270:intron 35.0%
! ACACTGCATGGATTAATGAT+TGG - chr1_3:5372680-5372699 Msa0099270:intron 35.0%
! CACTGCATGGATTAATGATT+GGG - chr1_3:5372681-5372700 Msa0099270:intron 35.0%
!!! TTTCACGTGGTTTTAATGTG+TGG - chr1_3:5372925-5372944 Msa0099270:intron 35.0%
! GTGGTTGTTGCTTATATGAA+TGG - chr1_3:5372944-5372963 Msa0099270:intron 35.0%
AGACAAATAAGTCAGGCAAA+AGG + chr1_3:5373001-5373020 None:intergenic 35.0%
ATCATACAAATGAGGAAGCT+TGG + chr1_3:5373073-5373092 None:intergenic 35.0%
AGTCAATCTATCTTGGTAAG+CGG - chr1_3:5373310-5373329 Msa0099270:intron 35.0%
!! ACCTAAGCATTCATTGGTTT+AGG - chr1_3:5373460-5373479 Msa0099270:intron 35.0%
! GTTTCAGTCAAATCCACTTT+TGG - chr1_3:5373548-5373567 Msa0099270:intron 35.0%
ACGACAATTCAAGGTGAATT+TGG - chr1_3:5373601-5373620 Msa0099270:intron 35.0%
! AATCTAAGATCAAAGGCAAG+TGG + chr1_3:5373664-5373683 None:intergenic 35.0%
GCCAAGAAAATTGCAAAAGA+TGG + chr1_3:5373687-5373706 None:intergenic 35.0%
CATTCCATGATACAAATGGT+GGG + chr1_3:5373781-5373800 None:intergenic 35.0%
ATCATGGAATGCATACTAAG+TGG - chr1_3:5373790-5373809 Msa0099270:intron 35.0%
GGTCATATCTCATTCAATGT+GGG + chr1_3:5373835-5373854 None:intergenic 35.0%
AGGTCATATCTCATTCAATG+TGG + chr1_3:5373836-5373855 None:intergenic 35.0%
CATCATTCACTTTACAAGTC+AGG - chr1_3:5373880-5373899 Msa0099270:intron 35.0%
AGCTTATCCAAGATTCTACT+GGG - chr1_3:5373950-5373969 Msa0099270:intron 35.0%
!! TTTAGTTCTTTACGAGAGGT+AGG - chr1_3:5374010-5374029 Msa0099270:intron 35.0%
ATAGGACCTTTATGGAAACA+AGG - chr1_3:5374205-5374224 Msa0099270:CDS 35.0%
! TCATCACCTTGTTTCCATAA+AGG + chr1_3:5374214-5374233 None:intergenic 35.0%
TTATGGAAACAAGGTGATGA+AGG - chr1_3:5374214-5374233 Msa0099270:CDS 35.0%
! ATGAAGGCATGTTTAAATCG+TGG - chr1_3:5374230-5374249 Msa0099270:CDS 35.0%
CTGATCAATCTCCTTTAATC+AGG + chr1_3:5374277-5374296 None:intergenic 35.0%
TTAAAGGAGATTGATCAGAG+AGG - chr1_3:5374279-5374298 Msa0099270:CDS 35.0%
!! CACAGAAAAGGTACTGATAA+AGG + chr1_3:5374364-5374383 None:intergenic 35.0%
AAAAACCGTTTGCACAGAAA+AGG + chr1_3:5374376-5374395 None:intergenic 35.0%
! TTTCTGTGCAAACGGTTTTT+AGG - chr1_3:5374376-5374395 Msa0099270:intron 35.0%
! TTCTGTGCAAACGGTTTTTA+GGG - chr1_3:5374377-5374396 Msa0099270:intron 35.0%
!!! TTTTTTGGTTGCAGTCGTTT+TGG - chr1_3:5374460-5374479 Msa0099270:intron 35.0%
!!! TTTTTGGTTGCAGTCGTTTT+GGG - chr1_3:5374461-5374480 Msa0099270:intron 35.0%
GATAGAAATGGTAGAATGTC+CGG - chr1_3:5374505-5374524 Msa0099270:intron 35.0%
AGCAGTGATAATTTCTTTCC+GGG + chr1_3:5374585-5374604 None:intergenic 35.0%
GAAATTGAATACCCTTTCAG+AGG + chr1_3:5374623-5374642 None:intergenic 35.0%
! AGGGTATTCAATTTCGTTGA+AGG - chr1_3:5374628-5374647 Msa0099270:intron 35.0%
CTGAAGAATACATAAAGACG+AGG - chr1_3:5374880-5374899 Msa0099270:intron 35.0%
AAGAATACATAAAGACGAGG+AGG - chr1_3:5374883-5374902 Msa0099270:intron 35.0%
AGAATACATAAAGACGAGGA+GGG - chr1_3:5374884-5374903 Msa0099270:intron 35.0%
! GGAAATGTTGAATTTTCTCC+TGG - chr1_3:5375089-5375108 Msa0099270:intron 35.0%
TTGAATGCAAATGCTGATGA+GGG + chr1_3:5375255-5375274 None:intergenic 35.0%
TTTGAATGCAAATGCTGATG+AGG + chr1_3:5375256-5375275 None:intergenic 35.0%
! AGACCAATGCTGATTATTCT+GGG + chr1_3:5375616-5375635 None:intergenic 35.0%
!! ATAATCAGCATTGGTCTCTT+TGG - chr1_3:5375619-5375638 Msa0099270:intron 35.0%
TCGAGAAGGAAATATTGTCA+AGG - chr1_3:5375838-5375857 Msa0099270:intron 35.0%
GATAAGATCAATAGGTCTGT+CGG - chr1_3:5376034-5376053 Msa0099270:intron 35.0%
CAAAACTCCAATTTGCATCT+GGG + chr1_3:5376074-5376093 None:intergenic 35.0%
!! AAGCCGGTTTCAGTTATTTT+AGG - chr1_3:5376131-5376150 Msa0099270:intron 35.0%
TATGGAACATTCCAATGCAT+CGG - chr1_3:5376266-5376285 Msa0099270:intron 35.0%
AAACTTGTACTTTCACTGGT+AGG - chr1_3:5376345-5376364 Msa0099270:intron 35.0%
ACAGAATTGCTCAAAACTGT+GGG + chr1_3:5376582-5376601 None:intergenic 35.0%
TACAGAATTGCTCAAAACTG+TGG + chr1_3:5376583-5376602 None:intergenic 35.0%
!! GCTTCAGCAACATTTTAATG+AGG - chr1_3:5376622-5376641 Msa0099270:intron 35.0%
CTTCCAGCATGTATTTAAGA+TGG - chr1_3:5376757-5376776 Msa0099270:CDS 35.0%
! TGTATTTAAGATGGAGCAAG+AGG - chr1_3:5376766-5376785 Msa0099270:CDS 35.0%
CTGGAGTTACATTGAATTTG+TGG - chr1_3:5376811-5376830 Msa0099270:CDS 35.0%
GAGAAATGTTGATCAACAAG+GGG + chr1_3:5377049-5377068 None:intergenic 35.0%
! TTTTTATCTGCTTCCACACA+CGG + chr1_3:5377095-5377114 None:intergenic 35.0%
TTTGTCTAATCCTACAACCT+AGG - chr1_3:5377456-5377475 Msa0099270:intron 35.0%
! GTCACGATTTTTGTCCAAAA+AGG + chr1_3:5378356-5378375 None:intergenic 35.0%
TTCAGTAGCTACCAGATTTA+AGG - chr1_3:5378486-5378505 Msa0099270:intron 35.0%
TTCACACATCGTATGTAATG+CGG + chr1_3:5378722-5378741 None:intergenic 35.0%
! TGTGGTCGATTCAATGAATT+TGG + chr1_3:5378746-5378765 None:intergenic 35.0%
CTTGCATTCTCAAACATTTG+TGG + chr1_3:5378764-5378783 None:intergenic 35.0%
TCTTTAATTGAACCCACCAA+CGG - chr1_3:5378829-5378848 Msa0099270:intron 35.0%
!! CAAGCATCGGTGTTAAAATT+GGG + chr1_3:5378975-5378994 None:intergenic 35.0%
!! TCAAGCATCGGTGTTAAAAT+TGG + chr1_3:5378976-5378995 None:intergenic 35.0%
TCTGAATACATTCTTCGAGT+GGG + chr1_3:5379280-5379299 None:intergenic 35.0%
! GTAGATCGCTATGGATTAAT+AGG - chr1_3:5379304-5379323 Msa0099270:intron 35.0%
! ATTAATAGGCCCGGAAATTT+TGG - chr1_3:5379318-5379337 Msa0099270:intron 35.0%
!!! GAAGGTGAGTTATTTTAAGG+TGG - chr1_3:5379344-5379363 Msa0099270:intron 35.0%
TTTCAACATGGTGATAGTCA+AGG - chr1_3:5379516-5379535 Msa0099270:intron 35.0%
!! TGATTCGGTTTGGTCTAAAA+TGG + chr1_3:5379611-5379630 None:intergenic 35.0%
TGATCAAGTTTGGTCTGATT+CGG + chr1_3:5379626-5379645 None:intergenic 35.0%
GACATATGGTATGGTTTAGT+CGG + chr1_3:5379660-5379679 None:intergenic 35.0%
! ATTGGATCACAGATCTCTTT+TGG - chr1_3:5379764-5379783 Msa0099270:CDS 35.0%
TGCAGTATGAATTCCATTGT+CGG - chr1_3:5379842-5379861 Msa0099270:intron 35.0%
TCTTCAAAACAAGACAAAGG+AGG + chr1_3:5380124-5380143 None:intergenic 35.0%
CTGTCTTCAAAACAAGACAA+AGG + chr1_3:5380127-5380146 None:intergenic 35.0%
AGTGGAAAGAGAGAAGAAAT+GGG + chr1_3:5380174-5380193 None:intergenic 35.0%
AAGTGGAAAGAGAGAAGAAA+TGG + chr1_3:5380175-5380194 None:intergenic 35.0%
CGATTCATGATTCACAAAAC+AGG - chr1_3:5380392-5380411 Msa0099270:intron 35.0%
!!! AATTTTCAGGTATGCTCTTC+AGG - chr1_3:5380643-5380662 Msa0099270:intron 35.0%
GTGTAATAAATGTCCTCAGT+TGG + chr1_3:5380865-5380884 None:intergenic 35.0%
TATAATGACTGTCTATTGGG+AGG - chr1_3:5380971-5380990 Msa0099270:CDS 35.0%
ATAATGACTGTCTATTGGGA+GGG - chr1_3:5380972-5380991 Msa0099270:CDS 35.0%
ATAGATAGTTTCTGCCATGA+TGG - chr1_3:5381003-5381022 Msa0099270:CDS 35.0%
TAGATAGTTTCTGCCATGAT+GGG - chr1_3:5381004-5381023 Msa0099270:CDS 35.0%
ACAAGTTCAAGTCATGCAAT+CGG + chr1_3:5381095-5381114 None:intergenic 35.0%
!! AACTAGTTCTGAATTTGGCT+TGG - chr1_3:5381269-5381288 Msa0099270:intron 35.0%
TCTGTGAGCACTCAAAATAT+AGG - chr1_3:5381461-5381480 Msa0099270:intron 35.0%
CTGTGAGCACTCAAAATATA+GGG - chr1_3:5381462-5381481 Msa0099270:intron 35.0%
GTTCTATAATTACATCAGCC+TGG - chr1_3:5381500-5381519 Msa0099270:intron 35.0%
ATATACGTATGAGGCTAACA+AGG - chr1_3:5381614-5381633 Msa0099270:intron 35.0%
ATCATACAATCGCATATTCG+AGG - chr1_3:5381670-5381689 Msa0099270:CDS 35.0%
AATGCAAATCAGTGAAGCAT+TGG + chr1_3:5381881-5381900 None:intergenic 35.0%
CACAAGTAACCAACCATAAA+TGG + chr1_3:5381936-5381955 None:intergenic 35.0%
! CATTTATGGTTGGTTACTTG+TGG - chr1_3:5381934-5381953 Msa0099270:intron 35.0%
CTCCAATAGGCCTATAATAT+CGG + chr1_3:5382002-5382021 None:intergenic 35.0%
TTGTGGCAATACAATGTCTA+TGG - chr1_3:5382066-5382085 Msa0099270:intron 35.0%
ATTGGATCTCCTATCAAAAG+GGG + chr1_3:5382148-5382167 None:intergenic 35.0%
CATTGGATCTCCTATCAAAA+GGG + chr1_3:5382149-5382168 None:intergenic 35.0%
ACATTGGATCTCCTATCAAA+AGG + chr1_3:5382150-5382169 None:intergenic 35.0%
! TTTTGTTCACTTTCTTCAGG+AGG - chr1_3:5382197-5382216 Msa0099270:intron 35.0%
!!! CAAGTTTAGTTTTAGCCAGA+CGG + chr1_3:5382242-5382261 None:intergenic 35.0%
TCCCAAAACACATTTGATGT+AGG + chr1_3:5382395-5382414 None:intergenic 35.0%
TGGGGCTCAAATGATTTAAA+TGG - chr1_3:5382494-5382513 Msa0099270:intron 35.0%
! ATGATTTTGCATTGTTGTGC+AGG - chr1_3:5382759-5382778 Msa0099270:intron 35.0%
CTCATTAATCGTAGCCAATT+TGG + chr1_3:5382866-5382885 None:intergenic 35.0%
TGCTGTTCTGCAAAATCAAT+TGG - chr1_3:5382897-5382916 Msa0099270:intron 35.0%
!!! TTGGATCTTGTTTTATGGCA+TGG - chr1_3:5383080-5383099 Msa0099270:intron 35.0%
AGGAATGGAGTACATTAAAG+AGG - chr1_3:5383239-5383258 Msa0099270:intron 35.0%
TTGGCTCAAAGAAAAGTTAC+TGG - chr1_3:5383314-5383333 Msa0099270:CDS 35.0%
GTGAAGAATAAGAAAAGAGG+TGG - chr1_3:5383452-5383471 Msa0099270:intron 35.0%
TTAGCGAGATGTAAATTGCT+TGG - chr1_3:5383529-5383548 Msa0099270:intron 35.0%
TGATAAATACACTATGCTGG+GGG - chr1_3:5383855-5383874 Msa0099270:CDS 35.0%
CAAGCCCAAATAGTCTTTAA+AGG - chr1_3:5383981-5384000 Msa0099270:intron 35.0%
! CAGAGCCTTTAAAGACTATT+TGG + chr1_3:5383989-5384008 None:intergenic 35.0%
CAGATATATGCTCTTGGAAA+CGG + chr1_3:5384058-5384077 None:intergenic 35.0%
ACACATCAGATATATGCTCT+TGG + chr1_3:5384064-5384083 None:intergenic 35.0%
!! TGAGAGAGCTTTATTGGAAT+GGG - chr1_3:5384280-5384299 Msa0099270:intron 35.0%
! ATGGGCTAAAAACAACTTGT+AGG - chr1_3:5384298-5384317 Msa0099270:intron 35.0%
AACATAGACTGTGTTTGGAT+TGG + chr1_3:5384409-5384428 None:intergenic 35.0%
TCAGTAACATAGACTGTGTT+TGG + chr1_3:5384414-5384433 None:intergenic 35.0%
!!! CTTATATTTTCAGGTTGCAC+TGG - chr1_3:5384486-5384505 Msa0099270:intron 35.0%
AGATGAGTACTTCTTCTCAA+AGG + chr1_3:5384515-5384534 None:intergenic 35.0%
!!! AATGTGAAAAGGTGCCTTTT+CGG - chr1_3:5384628-5384647 Msa0099270:intron 35.0%
ACTTATTAAATGCAGCCTTG+AGG - chr1_3:5384838-5384857 Msa0099270:intron 35.0%
! AACTCAATAGCTTTTCCTCA+AGG + chr1_3:5384856-5384875 None:intergenic 35.0%
! GGAAAAGCTATTGAGTTTTG+AGG - chr1_3:5384859-5384878 Msa0099270:intron 35.0%
GAAGTGAAATAAGATCAACC+TGG + chr1_3:5385359-5385378 None:intergenic 35.0%
TATCGCTTCAAAAGCAAAAC+TGG + chr1_3:5385465-5385484 None:intergenic 35.0%
ACATTCAGACGTGAATAATG+TGG + chr1_3:5385664-5385683 None:intergenic 35.0%
TCTCTTTGATACATCTAGAG+AGG + chr1_3:5385742-5385761 None:intergenic 35.0%
TATATGATACGAGCTGCAAT+AGG + chr1_3:5385788-5385807 None:intergenic 35.0%
! AGTTAATCTGCTTCAGGTTA+GGG - chr1_3:5386074-5386093 Msa0099270:intron 35.0%
!!! AATGGCTTTTTAGCTACCAA+TGG - chr1_3:5386174-5386193 Msa0099270:intron 35.0%
! TAAAATTGGCCTGGTAAGAT+TGG - chr1_3:5386413-5386432 Msa0099270:intron 35.0%
AAGACACTTGAGGTTTAACT+TGG - chr1_3:5386444-5386463 Msa0099270:intron 35.0%
!! TGAGGTTTAACTTGGAACAA+TGG - chr1_3:5386452-5386471 Msa0099270:intron 35.0%
TCAGAAACAACAGAACACAA+AGG - chr1_3:5386637-5386656 Msa0099270:intron 35.0%
!! ATGGTTGGAAAGTGTCAAAT+GGG - chr1_3:5386807-5386826 Msa0099270:intron 35.0%
!! ATGTGAGTTTGGGGTATTTT+GGG + chr1_3:5386924-5386943 None:intergenic 35.0%
AAAATCCACATGTGAGTTTG+GGG + chr1_3:5386933-5386952 None:intergenic 35.0%
!! GTTTGTTTATCATTGGCTCA+TGG - chr1_3:5387094-5387113 Msa0099270:intron 35.0%
AGTACTCAAACCACCAAAAA+AGG - chr1_3:5387286-5387305 Msa0099270:intron 35.0%
GTACTCAAACCACCAAAAAA+GGG - chr1_3:5387287-5387306 Msa0099270:intron 35.0%
!!! TACTTTGTACCCTTTTTTGG+TGG + chr1_3:5387299-5387318 None:intergenic 35.0%
!! ATCCAAGAGAGTGTATTTTG+AGG + chr1_3:5387397-5387416 None:intergenic 35.0%
AGCCATTCATAAAAAAGGCA+AGG - chr1_3:5387422-5387441 Msa0099270:CDS 35.0%
TATGTCTTGGCAATGGTTAT+TGG + chr1_3:5387465-5387484 None:intergenic 35.0%
ATTAAGCGTGTTAGAGATTG+TGG + chr1_3:5387501-5387520 None:intergenic 35.0%
GGAAAGAAAAGGTTTGATGT+TGG + chr1_3:5387588-5387607 None:intergenic 35.0%
GGAAAAAGGAAGGAAAGAAA+AGG + chr1_3:5387599-5387618 None:intergenic 35.0%
!!! TCTTTTTTCCGGAAAAAGGA+AGG + chr1_3:5387609-5387628 None:intergenic 35.0%
CGGAAAAAAGACACCAAATT+TGG - chr1_3:5387618-5387637 Msa0099270:intron 35.0%
! AAGACACCAAATTTGGAACA+AGG - chr1_3:5387625-5387644 Msa0099270:intron 35.0%
CCATATGGGATGTTGTTATA+GGG + chr1_3:5387681-5387700 None:intergenic 35.0%
! CCATTTTCTCTCTCTAAACA+TGG + chr1_3:5387784-5387803 None:intergenic 35.0%
CCATGTTTAGAGAGAGAAAA+TGG - chr1_3:5387781-5387800 Msa0099270:CDS 35.0%
! GCTTTGTTGAGTAACATACA+TGG + chr1_3:5387825-5387844 None:intergenic 35.0%
AGCATTACAGATCATTGTTG+AGG - chr1_3:5388077-5388096 Msa0099270:CDS 35.0%
GAAGATATAATACAAGGGAG+GGG + chr1_3:5388212-5388231 None:intergenic 35.0%
GGAAGATATAATACAAGGGA+GGG + chr1_3:5388213-5388232 None:intergenic 35.0%
AGGAAGATATAATACAAGGG+AGG + chr1_3:5388214-5388233 None:intergenic 35.0%
CAGGAGGAAGATATAATACA+AGG + chr1_3:5388218-5388237 None:intergenic 35.0%
GTAACACCAAAACTACAATC+AGG + chr1_3:5388237-5388256 None:intergenic 35.0%
! TGTTGCTTGAAAAGTATAGC+TGG + chr1_3:5388332-5388351 None:intergenic 35.0%
TGAATACATAGTTGCAGAAG+TGG + chr1_3:5388419-5388438 None:intergenic 35.0%
ACTTCTGCAACTATGTATTC+AGG - chr1_3:5388418-5388437 Msa0099270:intron 35.0%
ATCTAGAAGTGAATCAGTCT+TGG - chr1_3:5388553-5388572 Msa0099270:intron 35.0%
!!! TATTCTGTTTTTATGCTGGG+AGG - chr1_3:5388594-5388613 Msa0099270:intron 35.0%
!!! ATTCTGTTTTTATGCTGGGA+GGG - chr1_3:5388595-5388614 Msa0099270:intron 35.0%
!!! CAGACTAGTTTTGGAAATAG+TGG + chr1_3:5388648-5388667 None:intergenic 35.0%
GAACATTGTTCGTTATATGG+TGG - chr1_3:5388745-5388764 Msa0099270:intron 35.0%
ATATGGGTTCCATAAACACA+AGG - chr1_3:5388909-5388928 Msa0099270:intron 35.0%
! CTGCCAGTTGTTTACATTTT+AGG + chr1_3:5388977-5388996 None:intergenic 35.0%
TTAGATTCTATACCCTGGTT+TGG - chr1_3:5389007-5389026 Msa0099270:CDS 35.0%
AAATCATCTAGATCTCCTGT+TGG - chr1_3:5389157-5389176 Msa0099270:CDS 35.0%
AATCATCTAGATCTCCTGTT+GGG - chr1_3:5389158-5389177 Msa0099270:CDS 35.0%
! GGGCAACATTGTCAAATTTT+TGG - chr1_3:5389210-5389229 Msa0099270:CDS 35.0%
GTGCACACTTCATATTATCT+TGG - chr1_3:5389397-5389416 Msa0099270:intron 35.0%
GAAAAATGACAACACACATC+TGG - chr1_3:5389587-5389606 Msa0099270:intron 35.0%
CTCTATTCTATGTGGAACAT+GGG + chr1_3:5389701-5389720 None:intergenic 35.0%
TCTCTATTCTATGTGGAACA+TGG + chr1_3:5389702-5389721 None:intergenic 35.0%
! CGAAACTGACTTATAAAGTG+AGG + chr1_3:5389757-5389776 None:intergenic 35.0%
ATAAATGGTACGATTCCCAA+TGG + chr1_3:5389830-5389849 None:intergenic 35.0%
ACCATTTATATCCATGCACT+AGG - chr1_3:5389841-5389860 Msa0099270:intron 35.0%
GTCCTTTATGCTTTGTAGTT+AGG - chr1_3:5389947-5389966 Msa0099270:intron 35.0%
! CAGTGATAATTTCTAGGTTG+TGG - chr1_3:5390016-5390035 Msa0099270:intron 35.0%
AGTTTACGAATGAAGAAGGA+TGG + chr1_3:5390144-5390163 None:intergenic 35.0%
GAAATGGATAACCAATGCAA+AGG - chr1_3:5390405-5390424 Msa0099270:intron 35.0%
ACTTGTGAAATGTAGTATGC+AGG - chr1_3:5390493-5390512 Msa0099270:intron 35.0%
GGCATGAGCTGAATTATATA+AGG - chr1_3:5390524-5390543 Msa0099270:intron 35.0%
TACAGGTAATACATCAGAAG+AGG - chr1_3:5390653-5390672 Msa0099270:intron 35.0%
GTAATAATCATACCGGACAA+AGG + chr1_3:5390708-5390727 None:intergenic 35.0%
CAGCTAGAATCAAACATTCA+TGG + chr1_3:5390867-5390886 None:intergenic 35.0%
! AGTAGCAGGAATAAGAGTTT+TGG + chr1_3:5390955-5390974 None:intergenic 35.0%
ATGGTTGTTCAGATTCACTA+TGG - chr1_3:5391002-5391021 Msa0099270:intron 35.0%
CAGGAGAATAACAGAGTAAA+AGG + chr1_3:5391035-5391054 None:intergenic 35.0%
ATCTTATATGCTCAGGCAAA+TGG + chr1_3:5391181-5391200 None:intergenic 35.0%
TTTGCCTGAGCATATAAGAT+TGG - chr1_3:5391181-5391200 Msa0099270:intron 35.0%
ATCGAATCAGTACTATGTAC+TGG - chr1_3:5391254-5391273 Msa0099270:intron 35.0%
TCGAATCAGTACTATGTACT+GGG - chr1_3:5391255-5391274 Msa0099270:intron 35.0%
ATAGACTCAACTTACCTCAT+TGG + chr1_3:5391308-5391327 None:intergenic 35.0%
AACTACCTGTTCACCATATA+TGG + chr1_3:5391387-5391406 None:intergenic 35.0%
AACAGGTAGTTAGTGTAATG+AGG - chr1_3:5391396-5391415 Msa0099270:intron 35.0%
ACAGGTAGTTAGTGTAATGA+GGG - chr1_3:5391397-5391416 Msa0099270:intron 35.0%
AGTTAGTGTAATGAGGGAAA+TGG - chr1_3:5391403-5391422 Msa0099270:intron 35.0%
TCCTATTAGATGATGATCTG+AGG - chr1_3:5391462-5391481 Msa0099270:intron 35.0%
ACCTCAGATCATCATCTAAT+AGG + chr1_3:5391466-5391485 None:intergenic 35.0%
GCAAGTTAAAAGAACTTGGA+TGG + chr1_3:5391502-5391521 None:intergenic 35.0%
GCAAGCAAGTTAAAAGAACT+TGG + chr1_3:5391506-5391525 None:intergenic 35.0%
ATATTGTTATCCGCAAGCAA+GGG + chr1_3:5391556-5391575 None:intergenic 35.0%
GATTGCCATATCTACATCTT+CGG + chr1_3:5391612-5391631 None:intergenic 35.0%
GAATATTCAGACACGAATAC+TGG + chr1_3:5391665-5391684 None:intergenic 35.0%
! GTTTAGCTAGGTAATTTGTG+GGG + chr1_3:5391864-5391883 None:intergenic 35.0%
! GGTTTAGCTAGGTAATTTGT+GGG + chr1_3:5391865-5391884 None:intergenic 35.0%
TGGTTTAGCTAGGTAATTTG+TGG + chr1_3:5391866-5391885 None:intergenic 35.0%
CATAGATTACTGGAATATGC+TGG + chr1_3:5391886-5391905 None:intergenic 35.0%
! CCTGATCTAAGTTTTCACAT+AGG + chr1_3:5392107-5392126 None:intergenic 35.0%
CCTATGTGAAAACTTAGATC+AGG - chr1_3:5392104-5392123 Msa0099270:five_prime_UTR 35.0%
TCAACGATGAATGTACGCAA+AGG - chr1_3:5370658-5370677 Msa0099270:three_prime_UTR 40.0%
GAATGTACGCAAAGGTTCAA+CGG - chr1_3:5370666-5370685 Msa0099270:three_prime_UTR 40.0%
AAGAAAACTCACCTTCTTGC+CGG + chr1_3:5370776-5370795 None:intergenic 40.0%
TCTCAAACACAATTTCTCCG+GGG + chr1_3:5370890-5370909 None:intergenic 40.0%
CTCTCAAACACAATTTCTCC+GGG + chr1_3:5370891-5370910 None:intergenic 40.0%
GTGGATTTGAAGATATGACG+AGG - chr1_3:5370932-5370951 Msa0099270:CDS 40.0%
TGGCAGATAAGCTTATAAGC+TGG - chr1_3:5371396-5371415 Msa0099270:intron 40.0%
! TCACAGATAAGTTGGCTAAG+TGG - chr1_3:5371429-5371448 Msa0099270:intron 40.0%
! CACAGATAAGTTGGCTAAGT+GGG - chr1_3:5371430-5371449 Msa0099270:intron 40.0%
AGTTGAGGAGTTAAAGTTCC+AGG - chr1_3:5371821-5371840 Msa0099270:intron 40.0%
GTTGAGGAGTTAAAGTTCCA+GGG - chr1_3:5371822-5371841 Msa0099270:intron 40.0%
AAATTTAGGTGAGTCGAGTC+TGG - chr1_3:5372079-5372098 Msa0099270:intron 40.0%
AATTTAGGTGAGTCGAGTCT+GGG - chr1_3:5372080-5372099 Msa0099270:intron 40.0%
! CACTTGGGTGACATTACTTT+TGG - chr1_3:5372139-5372158 Msa0099270:intron 40.0%
TAACGTTAGAACCTTGTTCG+TGG + chr1_3:5372339-5372358 None:intergenic 40.0%
TGGTACTAAATAGCGTATCG+CGG + chr1_3:5372579-5372598 None:intergenic 40.0%
TTGCGGATCACGAAAAATAG+CGG + chr1_3:5372654-5372673 None:intergenic 40.0%
AATGATTGGGAAGTTCAGAC+AGG - chr1_3:5372694-5372713 Msa0099270:intron 40.0%
AAATAAGTCAGGCAAAAGGC+AGG + chr1_3:5372997-5373016 None:intergenic 40.0%
! AAGCTTGGTGAAGGGATTAA+CGG + chr1_3:5373058-5373077 None:intergenic 40.0%
! AAATGAGGAAGCTTGGTGAA+GGG + chr1_3:5373066-5373085 None:intergenic 40.0%
ACAGTATAAAGGAGCTCCAT+TGG - chr1_3:5373107-5373126 Msa0099270:intron 40.0%
CAGTATAAAGGAGCTCCATT+GGG - chr1_3:5373108-5373127 Msa0099270:intron 40.0%
CAGCAACAGCAAAAACATGT+GGG + chr1_3:5373143-5373162 None:intergenic 40.0%
TCAGCAACAGCAAAAACATG+TGG + chr1_3:5373144-5373163 None:intergenic 40.0%
CTGTTGCTGATGCATCTTAT+AGG - chr1_3:5373154-5373173 Msa0099270:intron 40.0%
TCTCGAACCTAAGCATTCAT+TGG - chr1_3:5373454-5373473 Msa0099270:intron 40.0%
GCCTAAACCAATGAATGCTT+AGG + chr1_3:5373464-5373483 None:intergenic 40.0%
!! TCAGTCAAATCCACTTTTGG+AGG - chr1_3:5373551-5373570 Msa0099270:intron 40.0%
!!! AATCCACTTTTGGAGGCATT+TGG - chr1_3:5373558-5373577 Msa0099270:intron 40.0%
CTGTTAGGAACGACAATTCA+AGG - chr1_3:5373592-5373611 Msa0099270:intron 40.0%
AAAATGACAGCCCAAACACT+AGG + chr1_3:5373752-5373771 None:intergenic 40.0%
CTATCCCACCATTTGTATCA+TGG - chr1_3:5373774-5373793 Msa0099270:intron 40.0%
GCATTCCATGATACAAATGG+TGG + chr1_3:5373782-5373801 None:intergenic 40.0%
ACTTTACAAGTCAGGCTTGT+AGG - chr1_3:5373888-5373907 Msa0099270:intron 40.0%
GAGCTTATCCAAGATTCTAC+TGG - chr1_3:5373949-5373968 Msa0099270:intron 40.0%
!! ACTTAACAAGCCGATTTTGC+AGG - chr1_3:5374099-5374118 Msa0099270:intron 40.0%
!! CTTAACAAGCCGATTTTGCA+GGG - chr1_3:5374100-5374119 Msa0099270:intron 40.0%
CTAACTCAACCCTGCAAAAT+CGG + chr1_3:5374112-5374131 None:intergenic 40.0%
!! ACTTAACAAGCCGATTTTGC+AGG - chr1_3:5374099-5374118 Msa0099270:intron 40.0%
!! CTTAACAAGCCGATTTTGCA+GGG - chr1_3:5374100-5374119 Msa0099270:intron 40.0%
CTAACTCAACCCTGCAAAAT+CGG + chr1_3:5374112-5374131 None:intergenic 40.0%
! CAGTACCTTTTCTGTGCAAA+CGG - chr1_3:5374368-5374387 Msa0099270:intron 40.0%
ATCACGAGTTGTGCAGATAA+CGG - chr1_3:5374558-5374577 Msa0099270:intron 40.0%
!!! TGCCTCATTTTAGGATGCAA+AGG - chr1_3:5374779-5374798 Msa0099270:intron 40.0%
CTCCTTTGCATCCTAAAATG+AGG + chr1_3:5374784-5374803 None:intergenic 40.0%
AACATGTACGAAAGCAAGAG+TGG + chr1_3:5374963-5374982 None:intergenic 40.0%
TTTCCTTTCTTCCTTCCATC+AGG - chr1_3:5375028-5375047 Msa0099270:intron 40.0%
AAATATGGCTTCCTGATGGA+AGG + chr1_3:5375042-5375061 None:intergenic 40.0%
! TTAGCTGCGATTTTGCACTT+GGG - chr1_3:5375068-5375087 Msa0099270:intron 40.0%
! ACTAACATTTGCTGGCAGAA+AGG - chr1_3:5375378-5375397 Msa0099270:intron 40.0%
! CTAACATTTGCTGGCAGAAA+GGG - chr1_3:5375379-5375398 Msa0099270:intron 40.0%
! TAACATTTGCTGGCAGAAAG+GGG - chr1_3:5375380-5375399 Msa0099270:intron 40.0%
! GACCAATGCTGATTATTCTG+GGG + chr1_3:5375615-5375634 None:intergenic 40.0%
! GAGACCAATGCTGATTATTC+TGG + chr1_3:5375617-5375636 None:intergenic 40.0%
CGAACAATACAAACTCGAGA+AGG - chr1_3:5375824-5375843 Msa0099270:intron 40.0%
! GGCTCGTTGATAAGATCAAT+AGG - chr1_3:5376026-5376045 Msa0099270:intron 40.0%
GTCAATTCCCAGATGCAAAT+TGG - chr1_3:5376064-5376083 Msa0099270:intron 40.0%
CCAAAACTCCAATTTGCATC+TGG + chr1_3:5376075-5376094 None:intergenic 40.0%
! CCAGATGCAAATTGGAGTTT+TGG - chr1_3:5376072-5376091 Msa0099270:intron 40.0%
TGGTTTCAGTTACTTGTCAC+TGG - chr1_3:5376162-5376181 Msa0099270:intron 40.0%
!! AACATTCCAATGCATCGGTT+GGG - chr1_3:5376271-5376290 Msa0099270:intron 40.0%
GCTCCATCTTAAATACATGC+TGG + chr1_3:5376763-5376782 None:intergenic 40.0%
TAATCTTGATCTACCGTGTG+TGG - chr1_3:5377079-5377098 Msa0099270:intron 40.0%
AATTGTCTGACACGTGTCAT+CGG - chr1_3:5377216-5377235 Msa0099270:intron 40.0%
TTGTTGTAAGTGGGAGATCT+AGG - chr1_3:5377312-5377331 Msa0099270:intron 40.0%
! GTCTGAGATAATGATGACTG+AGG - chr1_3:5377334-5377353 Msa0099270:intron 40.0%
!! TAGAGGTTCTGAAAGTGCAA+AGG - chr1_3:5377380-5377399 Msa0099270:intron 40.0%
!! AGAGGTTCTGAAAGTGCAAA+GGG - chr1_3:5377381-5377400 Msa0099270:intron 40.0%
! TTCCTTTTGCAGAAACCCAT+TGG - chr1_3:5377970-5377989 Msa0099270:CDS 40.0%
AACAGAGCAATGACACCAAT+GGG + chr1_3:5377988-5378007 None:intergenic 40.0%
GCTGCAAAAAGAAGAGATTC+AGG + chr1_3:5378093-5378112 None:intergenic 40.0%
! TCAAATTGCCCTTTTGTGTC+CGG - chr1_3:5378412-5378431 Msa0099270:intron 40.0%
AAGATTCCTCTGGTAGCAAA+GGG + chr1_3:5378444-5378463 None:intergenic 40.0%
GATGATCTTGAAGATTCCTC+TGG + chr1_3:5378454-5378473 None:intergenic 40.0%
ATCATACACCAATTACGCTG+TGG - chr1_3:5378785-5378804 Msa0099270:intron 40.0%
TCATACACCAATTACGCTGT+GGG - chr1_3:5378786-5378805 Msa0099270:intron 40.0%
AATTACGTTACTCCGTTGGT+GGG + chr1_3:5378844-5378863 None:intergenic 40.0%
TAGCAATTACGTTACTCCGT+TGG + chr1_3:5378848-5378867 None:intergenic 40.0%
TTTAACACCGATGCTTGATG+CGG - chr1_3:5378978-5378997 Msa0099270:intron 40.0%
ACCACTAATACGGAGAAAGA+GGG + chr1_3:5379057-5379076 None:intergenic 40.0%
AACCACTAATACGGAGAAAG+AGG + chr1_3:5379058-5379077 None:intergenic 40.0%
CTCTGAATACATTCTTCGAG+TGG + chr1_3:5379281-5379300 None:intergenic 40.0%
TCAGAGTTTGTAGATCGCTA+TGG - chr1_3:5379295-5379314 Msa0099270:intron 40.0%
ACCTTCCATCCAAAATTTCC+GGG + chr1_3:5379330-5379349 None:intergenic 40.0%
CACCTTCCATCCAAAATTTC+CGG + chr1_3:5379331-5379350 None:intergenic 40.0%
CAGATTGTACGTTCCATAAC+TGG - chr1_3:5379560-5379579 Msa0099270:intron 40.0%
!! AAGTTTGGTCTGATTCGGTT+TGG + chr1_3:5379621-5379640 None:intergenic 40.0%
CTAGTTCGGTTGATCAAGTT+TGG + chr1_3:5379636-5379655 None:intergenic 40.0%
CAAACTTGATCAACCGAACT+AGG - chr1_3:5379634-5379653 Msa0099270:CDS 40.0%
AACCATACCATATGTCTGCT+AGG - chr1_3:5379664-5379683 Msa0099270:CDS 40.0%
ATCCTAGCAGACATATGGTA+TGG + chr1_3:5379669-5379688 None:intergenic 40.0%
AACTGATCCTAGCAGACATA+TGG + chr1_3:5379674-5379693 None:intergenic 40.0%
TCATACTGCACAATTCAGTG+AGG + chr1_3:5379832-5379851 None:intergenic 40.0%
AGTATGAATTCCATTGTCGG+TGG - chr1_3:5379845-5379864 Msa0099270:intron 40.0%
CATGCAACCTAGAAAACTTC+TGG + chr1_3:5379874-5379893 None:intergenic 40.0%
! GTTTTCTAGGTTGCATGACT+CGG - chr1_3:5379877-5379896 Msa0099270:intron 40.0%
!! TTGCATGACTCGGTTTCTAA+AGG - chr1_3:5379887-5379906 Msa0099270:intron 40.0%
AATTGGGGAAAAATCCGACT+AGG + chr1_3:5379913-5379932 None:intergenic 40.0%
! ACCTTAGCACACTGTGTTTT+TGG - chr1_3:5380007-5380026 Msa0099270:intron 40.0%
ACCAAAAACACAGTGTGCTA+AGG + chr1_3:5380011-5380030 None:intergenic 40.0%
GATTCACAAAACAGGCTTTC+TGG - chr1_3:5380400-5380419 Msa0099270:intron 40.0%
! GCTCAAGCTTGAGAATTTTC+AGG - chr1_3:5380630-5380649 Msa0099270:intron 40.0%
! CAGGACCAAAGTATTTCTCA+GGG - chr1_3:5380769-5380788 Msa0099270:intron 40.0%
TGAGGACATTTATTACACGC+AGG - chr1_3:5380867-5380886 Msa0099270:CDS 40.0%
TAATGACTGTCTATTGGGAG+GGG - chr1_3:5380973-5380992 Msa0099270:CDS 40.0%
GTTAGATGTATCGTGCTCTA+TGG - chr1_3:5381039-5381058 Msa0099270:intron 40.0%
!! TTTCTAGCTAATGCAGCACA+AGG + chr1_3:5381072-5381091 None:intergenic 40.0%
! CTTGTTATCTCCTTTCTCAG+AGG - chr1_3:5381110-5381129 Msa0099270:intron 40.0%
TTACAACTTTCAACTGCTCC+TGG - chr1_3:5381160-5381179 Msa0099270:intron 40.0%
ACTGCTCCTGGAAAAATAGT+TGG - chr1_3:5381172-5381191 Msa0099270:intron 40.0%
!! GGTAAGCCAACTATTTTTCC+AGG + chr1_3:5381181-5381200 None:intergenic 40.0%
! CCATGTGATAGGAGTATAAC+AGG + chr1_3:5381202-5381221 None:intergenic 40.0%
CCTGTTATACTCCTATCACA+TGG - chr1_3:5381199-5381218 Msa0099270:intron 40.0%
AAGACAGTTGACCATGTGAT+AGG + chr1_3:5381213-5381232 None:intergenic 40.0%
!! TGGGGAACTAGTTCTGAATT+TGG - chr1_3:5381264-5381283 Msa0099270:intron 40.0%
CATTGGCAACCACGATTAAA+AGG + chr1_3:5381864-5381883 None:intergenic 40.0%
CACCGATATTATAGGCCTAT+TGG - chr1_3:5381997-5382016 Msa0099270:intron 40.0%
CGATATTATAGGCCTATTGG+AGG - chr1_3:5382000-5382019 Msa0099270:intron 40.0%
CAACTGAAGCAAGATATTGC+TGG + chr1_3:5382049-5382068 None:intergenic 40.0%
GCAATATCTTGCTTCAGTTG+TGG - chr1_3:5382049-5382068 Msa0099270:intron 40.0%
TGGCAATACAATGTCTATGG+CGG - chr1_3:5382069-5382088 Msa0099270:intron 40.0%
!!! TTTAGTTTTAGCCAGACGGA+GGG + chr1_3:5382238-5382257 None:intergenic 40.0%
TGCACCAGCTAATTAACTCA+CGG + chr1_3:5382658-5382677 None:intergenic 40.0%
TGTGCAGGTTTCTAATGATG+AGG - chr1_3:5382774-5382793 Msa0099270:intron 40.0%
CATGGAATTCTCTCTTTGCT+TGG + chr1_3:5382800-5382819 None:intergenic 40.0%
TGAATTAGATGCGGCCAAAT+TGG - chr1_3:5382849-5382868 Msa0099270:intron 40.0%
! AAAGAGAGAGCTAGTTTCTG+TGG - chr1_3:5382948-5382967 Msa0099270:intron 40.0%
TTCTGTGGCTGAATTACGAA+AGG - chr1_3:5382963-5382982 Msa0099270:intron 40.0%
ACAGATTAACTGATGGCAGA+AGG - chr1_3:5383402-5383421 Msa0099270:intron 40.0%
CAGATTAACTGATGGCAGAA+GGG - chr1_3:5383403-5383422 Msa0099270:intron 40.0%
AGATTAACTGATGGCAGAAG+GGG - chr1_3:5383404-5383423 Msa0099270:intron 40.0%
GAATAAGAAAAGAGGTGGCA+TGG - chr1_3:5383457-5383476 Msa0099270:intron 40.0%
ATGAATGACAGACAGCATGT+AGG + chr1_3:5383658-5383677 None:intergenic 40.0%
! AATAACGGAAAGCAAACCTG+GGG + chr1_3:5383745-5383764 None:intergenic 40.0%
! GAATAACGGAAAGCAAACCT+GGG + chr1_3:5383746-5383765 None:intergenic 40.0%
GAGACAAAGCCACTTGAAAT+TGG + chr1_3:5383916-5383935 None:intergenic 40.0%
AAAGGATTGTCTAAGGAGCT+AGG + chr1_3:5383938-5383957 None:intergenic 40.0%
TAGCTCCTTAGACAATCCTT+TGG - chr1_3:5383937-5383956 Msa0099270:intron 40.0%
GTCGCATTAGGAGAAAGTTT+AGG - chr1_3:5384100-5384119 Msa0099270:CDS 40.0%
! GTAACCTGAGAGAGCTTTAT+TGG - chr1_3:5384274-5384293 Msa0099270:intron 40.0%
CATTCCAATAAAGCTCTCTC+AGG + chr1_3:5384281-5384300 None:intergenic 40.0%
!! CTGAGAGAGCTTTATTGGAA+TGG - chr1_3:5384279-5384298 Msa0099270:intron 40.0%
CATAAGCACTTGTCAACGTT+TGG + chr1_3:5384353-5384372 None:intergenic 40.0%
GTTTCTCAATCGTTTCGTCT+CGG + chr1_3:5384570-5384589 None:intergenic 40.0%
ACGAAACGATTGAGAAACTG+AGG - chr1_3:5384572-5384591 Msa0099270:intron 40.0%
CGAAACGATTGAGAAACTGA+GGG - chr1_3:5384573-5384592 Msa0099270:intron 40.0%
AGCTCGAGCAAAATGTGAAA+AGG - chr1_3:5384617-5384636 Msa0099270:intron 40.0%
GAAGAAAAAGGGAACCGAAA+AGG + chr1_3:5384645-5384664 None:intergenic 40.0%
ACAGCGCAATTGTCAACATA+AGG + chr1_3:5385075-5385094 None:intergenic 40.0%
CATGTGCTCTAATTTGATGC+AGG - chr1_3:5385248-5385267 Msa0099270:intron 40.0%
!! GTAGTAAGTTTTGTGGGTGT+GGG + chr1_3:5385279-5385298 None:intergenic 40.0%
GATCTAAGTCATCAGCAGAT+AGG - chr1_3:5385331-5385350 Msa0099270:intron 40.0%
AGGCATAAATGACGCTCTAA+AGG - chr1_3:5385874-5385893 Msa0099270:intron 40.0%
CATTGGAGTTAATCTGCTTC+AGG - chr1_3:5386068-5386087 Msa0099270:intron 40.0%
! GAGTTAATCTGCTTCAGGTT+AGG - chr1_3:5386073-5386092 Msa0099270:intron 40.0%
AACGTAAGTTCCTCTGTAAG+AGG + chr1_3:5386152-5386171 None:intergenic 40.0%
CAGAGGAACTTACGTTCAAA+TGG - chr1_3:5386156-5386175 Msa0099270:intron 40.0%
TACAGTTCACCAATCTTACC+AGG + chr1_3:5386425-5386444 None:intergenic 40.0%
ACTTTCCTGGAGTTTATGGA+TGG - chr1_3:5386734-5386753 Msa0099270:CDS 40.0%
!! AGAGTGGGTTAGCAAACAAA+TGG - chr1_3:5386757-5386776 Msa0099270:CDS 40.0%
GACACTTTCCAACCATGAAA+TGG + chr1_3:5386803-5386822 None:intergenic 40.0%
!! CATGGTTGGAAAGTGTCAAA+TGG - chr1_3:5386806-5386825 Msa0099270:intron 40.0%
!! TGGTTGGAAAGTGTCAAATG+GGG - chr1_3:5386808-5386827 Msa0099270:intron 40.0%
!!! TGGGGTATTTTGGGGTTTTT+GGG + chr1_3:5386915-5386934 None:intergenic 40.0%
!!! TTGGGGTATTTTGGGGTTTT+TGG + chr1_3:5386916-5386935 None:intergenic 40.0%
!! TGTGAGTTTGGGGTATTTTG+GGG + chr1_3:5386923-5386942 None:intergenic 40.0%
!! CATGTGAGTTTGGGGTATTT+TGG + chr1_3:5386925-5386944 None:intergenic 40.0%
AAATACCCCAAACTCACATG+TGG - chr1_3:5386925-5386944 Msa0099270:intron 40.0%
AACAACCTTACAGTTGCACA+AGG + chr1_3:5386983-5387002 None:intergenic 40.0%
!! ATTTTAACAGGTTGACCTCG+AGG + chr1_3:5387015-5387034 None:intergenic 40.0%
!!! CAAACAGAGAGGCTGTTTTT+AGG + chr1_3:5387038-5387057 None:intergenic 40.0%
ACATGAAGTGTGGACAAATG+CGG - chr1_3:5387127-5387146 Msa0099270:intron 40.0%
ACATGGAGTGTGGACAAATT+CGG - chr1_3:5387171-5387190 Msa0099270:intron 40.0%
AATTGTCCAATCCTGAGTGT+GGG + chr1_3:5387201-5387220 None:intergenic 40.0%
AAATTGTCCAATCCTGAGTG+TGG + chr1_3:5387202-5387221 None:intergenic 40.0%
!! ACAAAGTATAAGGGGTACTC+AGG - chr1_3:5387311-5387330 Msa0099270:intron 40.0%
! CTTCTTTATTTGGGTAGTGG+TGG + chr1_3:5387337-5387356 None:intergenic 40.0%
CACCACTACCCAAATAAAGA+AGG - chr1_3:5387335-5387354 Msa0099270:intron 40.0%
! TGCCTTCTTTATTTGGGTAG+TGG + chr1_3:5387340-5387359 None:intergenic 40.0%
CTCCTCAAAATACACTCTCT+TGG - chr1_3:5387392-5387411 Msa0099270:intron 40.0%
! ATGTAACGCTTTGGGCTATT+TGG + chr1_3:5387559-5387578 None:intergenic 40.0%
!!! GGTGTCTTTTTTCCGGAAAA+AGG + chr1_3:5387613-5387632 None:intergenic 40.0%
CCCTATAACAACATCCCATA+TGG - chr1_3:5387678-5387697 Msa0099270:CDS 40.0%
GCCATATGGGATGTTGTTAT+AGG + chr1_3:5387682-5387701 None:intergenic 40.0%
CTCCAGAGCATGGATAAATA+CGG - chr1_3:5387723-5387742 Msa0099270:CDS 40.0%
TCCAGAGCATGGATAAATAC+GGG - chr1_3:5387724-5387743 Msa0099270:CDS 40.0%
TATCCAGACAGGAAGGTTTA+AGG - chr1_3:5387956-5387975 Msa0099270:intron 40.0%
ATACCTTAAACCTTCCTGTC+TGG + chr1_3:5387962-5387981 None:intergenic 40.0%
! GACAGGAAGGTTTAAGGTAT+TGG - chr1_3:5387962-5387981 Msa0099270:intron 40.0%
! CTTCCTCCTGATTGTAGTTT+TGG - chr1_3:5388228-5388247 Msa0099270:intron 40.0%
ACACCAAAACTACAATCAGG+AGG + chr1_3:5388234-5388253 None:intergenic 40.0%
! TTTTTATGCTGGGAGGGAAA+GGG - chr1_3:5388601-5388620 Msa0099270:intron 40.0%
GTTTCAGTGTGTTGAGAAAG+AGG - chr1_3:5388790-5388809 Msa0099270:intron 40.0%
TGTGTTGAGAAAGAGGAAAG+CGG - chr1_3:5388797-5388816 Msa0099270:intron 40.0%
ATTAGACACCCAAAACAGGA+AGG - chr1_3:5389122-5389141 Msa0099270:intron 40.0%
TTAGACACCCAAAACAGGAA+GGG - chr1_3:5389123-5389142 Msa0099270:intron 40.0%
GGTGATAATTGTGTCCGATT+AGG - chr1_3:5389549-5389568 Msa0099270:intron 40.0%
TAATTGTGTCCGATTAGGAC+TGG - chr1_3:5389554-5389573 Msa0099270:intron 40.0%
AATTGTGTCCGATTAGGACT+GGG - chr1_3:5389555-5389574 Msa0099270:intron 40.0%
! GATAGGCTCTGATACCATAT+TGG + chr1_3:5389808-5389827 None:intergenic 40.0%
GCCTAGTGCATGGATATAAA+TGG + chr1_3:5389845-5389864 None:intergenic 40.0%
GCCCTAACTACAAAGCATAA+AGG + chr1_3:5389952-5389971 None:intergenic 40.0%
TTTGTAGTTAGGGCGACATT+TGG - chr1_3:5389958-5389977 Msa0099270:intron 40.0%
GGGAAATAGATCATGGTGAA+TGG + chr1_3:5390077-5390096 None:intergenic 40.0%
TGTAAGAAAAAATGTGGGGG+CGG + chr1_3:5390099-5390118 None:intergenic 40.0%
GAATGTTGCACATTCTCCAA+CGG - chr1_3:5390349-5390368 Msa0099270:intron 40.0%
GATAACCAATGCAAAGGAGA+TGG - chr1_3:5390411-5390430 Msa0099270:intron 40.0%
GTTTACCATCTCCTTTGCAT+TGG + chr1_3:5390419-5390438 None:intergenic 40.0%
TTCATCACATGGGTTTGACT+AGG - chr1_3:5390469-5390488 Msa0099270:intron 40.0%
TGTAGTATGCAGGAATGTCT+TGG - chr1_3:5390503-5390522 Msa0099270:intron 40.0%
ATCATTGGAAGAGATTCGAC+AGG - chr1_3:5390681-5390700 Msa0099270:intron 40.0%
CGATCGCAACTATGAGAAAT+AGG + chr1_3:5390831-5390850 None:intergenic 40.0%
GTTTATACCAATGCCTGACA+TGG - chr1_3:5390983-5391002 Msa0099270:intron 40.0%
TGAATCTGAACAACCATGTC+AGG + chr1_3:5390999-5391018 None:intergenic 40.0%
ATGTACTGGGATGACAAGTA+TGG - chr1_3:5391268-5391287 Msa0099270:intron 40.0%
CTGAACCATATATGGTGAAC+AGG - chr1_3:5391379-5391398 Msa0099270:intron 40.0%
GGGGAACTATGAACATTGAT+TGG + chr1_3:5391536-5391555 None:intergenic 40.0%
TATTGTTATCCGCAAGCAAG+GGG + chr1_3:5391555-5391574 None:intergenic 40.0%
CATATTGTTATCCGCAAGCA+AGG + chr1_3:5391557-5391576 None:intergenic 40.0%
TCAATCTCGTCCAGATCTAT+AGG + chr1_3:5391638-5391657 None:intergenic 40.0%
GTTGCTAGTCATGATGTCAA+AGG - chr1_3:5391803-5391822 Msa0099270:intron 40.0%
AGGTAGAAGAGTAACGATCT+TGG - chr1_3:5391823-5391842 Msa0099270:CDS 40.0%
AGAAGAGTAACGATCTTGGT+TGG - chr1_3:5391827-5391846 Msa0099270:CDS 40.0%
!! TGGAATATGCTGGTTTAGCT+AGG + chr1_3:5391876-5391895 None:intergenic 40.0%
TACGCAAAGGTTCAACGGTT+TGG - chr1_3:5370671-5370690 Msa0099270:three_prime_UTR 45.0%
ACGCAAAGGTTCAACGGTTT+GGG - chr1_3:5370672-5370691 Msa0099270:three_prime_UTR 45.0%
! TGTAACTGATTCCGGCAAGA+AGG - chr1_3:5370762-5370781 Msa0099270:three_prime_UTR 45.0%
!! AATTTGAGTTGTGACGGTGC+CGG - chr1_3:5370841-5370860 Msa0099270:three_prime_UTR 45.0%
AACAACCTGCACAATTCCTC+CGG + chr1_3:5370863-5370882 None:intergenic 45.0%
ACGCCTTCCATCAGAAGTTT+CGG + chr1_3:5371069-5371088 None:intergenic 45.0%
TGTCCGGTGTTTGATATGCA+CGG - chr1_3:5371088-5371107 Msa0099270:intron 45.0%
TGTCCGTGCATATCAAACAC+CGG + chr1_3:5371094-5371113 None:intergenic 45.0%
CTGATGTGTCCGTGTTTGAT+TGG - chr1_3:5371162-5371181 Msa0099270:CDS 45.0%
CTCTTTATTGTTGTAGGGGG+CGG - chr1_3:5371750-5371769 Msa0099270:intron 45.0%
TCTTTATTGTTGTAGGGGGC+GGG - chr1_3:5371751-5371770 Msa0099270:intron 45.0%
!! TGGGTAGCTCAATTGGTTTG+TGG - chr1_3:5371784-5371803 Msa0099270:intron 45.0%
!! AGCTCAATTGGTTTGTGGCA+AGG - chr1_3:5371789-5371808 Msa0099270:intron 45.0%
!! GCTCAATTGGTTTGTGGCAA+GGG - chr1_3:5371790-5371809 Msa0099270:intron 45.0%
GGTTTGTGGCAAGGGATTAA+AGG - chr1_3:5371798-5371817 Msa0099270:intron 45.0%
GCAAGGGATTAAAGGAGTTG+AGG - chr1_3:5371806-5371825 Msa0099270:intron 45.0%
AAGTTCCAGGGTTCAAGTCT+TGG - chr1_3:5371834-5371853 Msa0099270:intron 45.0%
CAACTGTCACACAATTCGCA+CGG + chr1_3:5372001-5372020 None:intergenic 45.0%
ATTTAGGTGAGTCGAGTCTG+GGG - chr1_3:5372081-5372100 Msa0099270:intron 45.0%
TGCACTTGGGTGACTGTTAT+CGG + chr1_3:5372275-5372294 None:intergenic 45.0%
CTCTGAGTCAGATTGCACTT+GGG + chr1_3:5372288-5372307 None:intergenic 45.0%
TCTCTGAGTCAGATTGCACT+TGG + chr1_3:5372289-5372308 None:intergenic 45.0%
TAGTATCATACGGCCAACGT+AGG + chr1_3:5372424-5372443 None:intergenic 45.0%
CCATGCAGTGTTGTCAATTG+CGG + chr1_3:5372671-5372690 None:intergenic 45.0%
! CAAATGAGGAAGCTTGGTGA+AGG + chr1_3:5373067-5373086 None:intergenic 45.0%
ATCTTGGTAAGCGGTGAAAG+TGG - chr1_3:5373319-5373338 Msa0099270:intron 45.0%
!!! ACTTTTGTTGGTGGTCGTAC+CGG - chr1_3:5373385-5373404 Msa0099270:CDS 45.0%
GACTGTTCTATCATCACCAC+CGG + chr1_3:5373407-5373426 None:intergenic 45.0%
TTGCCAAATGCCTCCAAAAG+TGG + chr1_3:5373564-5373583 None:intergenic 45.0%
TTGGCAATGCAAGGACTGTT+AGG - chr1_3:5373577-5373596 Msa0099270:intron 45.0%
CTCATTCAATGTGGGACTCT+TGG + chr1_3:5373827-5373846 None:intergenic 45.0%
! CGATTTTGCAGGGTTGAGTT+AGG - chr1_3:5374110-5374129 Msa0099270:intron 45.0%
! CGATTTTGCAGGGTTGAGTT+AGG - chr1_3:5374110-5374129 Msa0099270:intron 45.0%
AATTCGCATTGTGCATGTGC+AGG - chr1_3:5374699-5374718 Msa0099270:intron 45.0%
CATTGTGCATGTGCAGGTTA+TGG - chr1_3:5374705-5374724 Msa0099270:intron 45.0%
AGGAGGGCAATGGATATTGT+AGG - chr1_3:5374900-5374919 Msa0099270:intron 45.0%
TATTGTAGGCATCAGTCACG+AGG - chr1_3:5374914-5374933 Msa0099270:intron 45.0%
CTTCCTGATGGAAGGAAGAA+AGG + chr1_3:5375034-5375053 None:intergenic 45.0%
CACGAAATATGGCTTCCTGA+TGG + chr1_3:5375046-5375065 None:intergenic 45.0%
CGCAGCTAAGACACGAAATA+TGG + chr1_3:5375057-5375076 None:intergenic 45.0%
! CTTAGCTGCGATTTTGCACT+TGG - chr1_3:5375067-5375086 Msa0099270:intron 45.0%
GCAAATGCTGATGAGGGAAA+TGG + chr1_3:5375249-5375268 None:intergenic 45.0%
GCAACAACTAAGAAGTGACG+TGG - chr1_3:5375424-5375443 Msa0099270:intron 45.0%
CAGCTGCTTGGATTCTTACA+CGG + chr1_3:5375591-5375610 None:intergenic 45.0%
GACCCCAGAATAATCAGCAT+TGG - chr1_3:5375610-5375629 Msa0099270:intron 45.0%
GGCTCTTGATTGTAATGCTG+CGG - chr1_3:5375859-5375878 Msa0099270:intron 45.0%
! GAACATTCCAATGCATCGGT+TGG - chr1_3:5376270-5376289 Msa0099270:intron 45.0%
! GTGTGTACTTGTCACTTCTC+TGG - chr1_3:5376305-5376324 Msa0099270:intron 45.0%
ATGTGAACAAACAGCAGCAG+TGG + chr1_3:5376505-5376524 None:intergenic 45.0%
! CTGCTGCTGTTTGTTCACAT+TGG - chr1_3:5376505-5376524 Msa0099270:intron 45.0%
AAGATGGAGCAAGAGGAGTA+TGG - chr1_3:5376773-5376792 Msa0099270:CDS 45.0%
GAACTGTGAACAAGTACGTC+AGG - chr1_3:5377356-5377375 Msa0099270:intron 45.0%
GAACAAGTACGTCAGGTTAG+AGG - chr1_3:5377363-5377382 Msa0099270:intron 45.0%
! CACCAATGGGTTTCTGCAAA+AGG + chr1_3:5377975-5377994 None:intergenic 45.0%
CAACAGAGCAATGACACCAA+TGG + chr1_3:5377989-5378008 None:intergenic 45.0%
!! CATTGGTGTCATTGCTCTGT+TGG - chr1_3:5377987-5378006 Msa0099270:CDS 45.0%
TTGCTCTGTTGGATGAAGCT+TGG - chr1_3:5377998-5378017 Msa0099270:CDS 45.0%
GGAAAAGACCGGACACAAAA+GGG + chr1_3:5378423-5378442 None:intergenic 45.0%
TGGTAGCAAAGGGAAAAGAC+CGG + chr1_3:5378434-5378453 None:intergenic 45.0%
! TCTTTTCCCTTTGCTACCAG+AGG - chr1_3:5378435-5378454 Msa0099270:intron 45.0%
GAAGATTCCTCTGGTAGCAA+AGG + chr1_3:5378445-5378464 None:intergenic 45.0%
GAGTGCTTGAAGTTGTTGCT+GGG + chr1_3:5378675-5378694 None:intergenic 45.0%
TGAGTGCTTGAAGTTGTTGC+TGG + chr1_3:5378676-5378695 None:intergenic 45.0%
GCAACAACTTCAAGCACTCA+TGG - chr1_3:5378676-5378695 Msa0099270:intron 45.0%
CATACACCAATTACGCTGTG+GGG - chr1_3:5378787-5378806 Msa0099270:intron 45.0%
TACTAACCCCACAGCGTAAT+TGG + chr1_3:5378796-5378815 None:intergenic 45.0%
CAATTACGTTACTCCGTTGG+TGG + chr1_3:5378845-5378864 None:intergenic 45.0%
TCCCTCTTTCTCCGTATTAG+TGG - chr1_3:5379053-5379072 Msa0099270:intron 45.0%
! CACACGGCACACGATTATTT+TGG + chr1_3:5379097-5379116 None:intergenic 45.0%
GAAGACAGACATGTGAATCG+TGG + chr1_3:5379153-5379172 None:intergenic 45.0%
GACTTATCCGAACAGCTTCA+AGG + chr1_3:5379246-5379265 None:intergenic 45.0%
TGAAGCTGTTCGGATAAGTC+TGG - chr1_3:5379246-5379265 Msa0099270:intron 45.0%
! TCGCTATGGATTAATAGGCC+CGG - chr1_3:5379309-5379328 Msa0099270:intron 45.0%
! ATAGGCCCGGAAATTTTGGA+TGG - chr1_3:5379322-5379341 Msa0099270:intron 45.0%
TGGTGATAGTCAAGGACTAC+AGG - chr1_3:5379524-5379543 Msa0099270:intron 45.0%
!! TGATCTGATTCGGCCAGTTA+TGG + chr1_3:5379576-5379595 None:intergenic 45.0%
ATGGTTTAGTCGGCCTAGTT+CGG + chr1_3:5379650-5379669 None:intergenic 45.0%
! GTGGAGTCCAGAAGTTTTCT+AGG - chr1_3:5379864-5379883 Msa0099270:intron 45.0%
! TCGGTTTCTAAAGGCCTAGT+CGG - chr1_3:5379896-5379915 Msa0099270:intron 45.0%
TTCACAGTGTGAATCTCGAC+AGG - chr1_3:5380423-5380442 Msa0099270:intron 45.0%
TCTTTCTTGTTCAGTTGGGC+AGG - chr1_3:5380750-5380769 Msa0099270:intron 45.0%
! GCAGGACCAAAGTATTTCTC+AGG - chr1_3:5380768-5380787 Msa0099270:intron 45.0%
! ACCAAAGTATTTCTCAGGGC+TGG - chr1_3:5380773-5380792 Msa0099270:intron 45.0%
ACCAGCCCTGAGAAATACTT+TGG + chr1_3:5380777-5380796 None:intergenic 45.0%
!! TTTCTCAGGGCTGGTCAAAT+TGG - chr1_3:5380782-5380801 Msa0099270:intron 45.0%
AGTGTATTCAGTGCCAACTG+AGG - chr1_3:5380849-5380868 Msa0099270:CDS 45.0%
! TTCTGCCATGATGGGATACA+AGG - chr1_3:5381012-5381031 Msa0099270:CDS 45.0%
! CCATGATGGGATACAAGGAA+GGG - chr1_3:5381017-5381036 Msa0099270:CDS 45.0%
TACCAAAACCTATGAGGACC+AGG + chr1_3:5381521-5381540 None:intergenic 45.0%
CAGAGCTGCTATATCTGTTC+AGG - chr1_3:5381732-5381751 Msa0099270:CDS 45.0%
GTTGGTTACTTGTGGACGAT+GGG - chr1_3:5381942-5381961 Msa0099270:CDS 45.0%
GACCTTGTACATCCTCCAAT+AGG + chr1_3:5382015-5382034 None:intergenic 45.0%
ATTGGAGGATGTACAAGGTC+AGG - chr1_3:5382015-5382034 Msa0099270:intron 45.0%
GCGGTGTAGACAAGCAAAAA+GGG - chr1_3:5382088-5382107 Msa0099270:intron 45.0%
!!! GTTTAGTTTTAGCCAGACGG+AGG + chr1_3:5382239-5382258 None:intergenic 45.0%
AGCAATTGGAAGAGCTCACA+TGG - chr1_3:5382265-5382284 Msa0099270:intron 45.0%
GCACCAGCTAATTAACTCAC+GGG + chr1_3:5382657-5382676 None:intergenic 45.0%
GAGTTAATTAGCTGGTGCAG+AGG - chr1_3:5382659-5382678 Msa0099270:intron 45.0%
GATCAGAATCGACATCGCAA+AGG + chr1_3:5382685-5382704 None:intergenic 45.0%
! GAAGGGGCATGAAACTGTTT+AGG - chr1_3:5383420-5383439 Msa0099270:intron 45.0%
ATGGAATAGTCTAGGTGACG+TGG - chr1_3:5383476-5383495 Msa0099270:intron 45.0%
! GGAATAACGGAAAGCAAACC+TGG + chr1_3:5383747-5383766 None:intergenic 45.0%
! ACTCTTACGTGGAGCACTTA+AGG + chr1_3:5384912-5384931 None:intergenic 45.0%
ATACGGGATTTCTCTCAGTG+CGG + chr1_3:5385161-5385180 None:intergenic 45.0%
!! GGTAGTAAGTTTTGTGGGTG+TGG + chr1_3:5385280-5385299 None:intergenic 45.0%
! CTTACTACCTCTTTTACGCC+AGG - chr1_3:5385291-5385310 Msa0099270:intron 45.0%
! TTTTGCTGAAACTTGGGCAG+GGG + chr1_3:5385411-5385430 None:intergenic 45.0%
! GTTTTGCTGAAACTTGGGCA+GGG + chr1_3:5385412-5385431 None:intergenic 45.0%
! AGTTTTGCTGAAACTTGGGC+AGG + chr1_3:5385413-5385432 None:intergenic 45.0%
! TCTTCATGATGGAAGACCAG+TGG - chr1_3:5385596-5385615 Msa0099270:intron 45.0%
! CTTCATGATGGAAGACCAGT+GGG - chr1_3:5385597-5385616 Msa0099270:intron 45.0%
ATCAACATGCAACATCCCAC+TGG + chr1_3:5385615-5385634 None:intergenic 45.0%
!! GAAGTGTTGGACAGCCAATA+TGG + chr1_3:5386117-5386136 None:intergenic 45.0%
! GCATAGAAGAGCAGAAGTGT+TGG + chr1_3:5386130-5386149 None:intergenic 45.0%
CTCTTCTATGCCTCTTACAG+AGG - chr1_3:5386139-5386158 Msa0099270:intron 45.0%
ACCAATGGTCAGCGTTATAC+TGG - chr1_3:5386189-5386208 Msa0099270:intron 45.0%
TCCAGTATAACGCTGACCAT+TGG + chr1_3:5386193-5386212 None:intergenic 45.0%
GGTGAACTGTAAGACACTTG+AGG - chr1_3:5386434-5386453 Msa0099270:intron 45.0%
AGGAGAGAGCAAAATCATCC+TGG - chr1_3:5386680-5386699 Msa0099270:CDS 45.0%
AGAGAGCAAAATCATCCTGG+TGG - chr1_3:5386683-5386702 Msa0099270:CDS 45.0%
! TTTTCTTCTCACTGTCCACC+AGG + chr1_3:5386701-5386720 None:intergenic 45.0%
! TGGTGGACAGTGAGAAGAAA+AGG - chr1_3:5386700-5386719 Msa0099270:CDS 45.0%
GGTGGACAGTGAGAAGAAAA+GGG - chr1_3:5386701-5386720 Msa0099270:CDS 45.0%
GAGCACTTTCCTGGAGTTTA+TGG - chr1_3:5386730-5386749 Msa0099270:CDS 45.0%
ACTCTCCATCCATAAACTCC+AGG + chr1_3:5386742-5386761 None:intergenic 45.0%
TGGAGTTTATGGATGGAGAG+TGG - chr1_3:5386741-5386760 Msa0099270:CDS 45.0%
GGAGTTTATGGATGGAGAGT+GGG - chr1_3:5386742-5386761 Msa0099270:CDS 45.0%
CTCATCTCTCTGTTACAGCA+CGG + chr1_3:5386834-5386853 None:intergenic 45.0%
GAGTTTGCCATTCAGAGATG+AGG - chr1_3:5386851-5386870 Msa0099270:intron 45.0%
!!! GGGTTTTTGGGTGGAAAACA+GGG + chr1_3:5386903-5386922 None:intergenic 45.0%
!!! GGTATTTTGGGGTTTTTGGG+TGG + chr1_3:5386912-5386931 None:intergenic 45.0%
! TTAGATGATTCGGCCATCAG+AGG - chr1_3:5386952-5386971 Msa0099270:intron 45.0%
! ATGAGCCTTGTGCAACTGTA+AGG - chr1_3:5386975-5386994 Msa0099270:intron 45.0%
TCATACCACTGCAAACAGAG+AGG + chr1_3:5387049-5387068 None:intergenic 45.0%
TCTGTTTGCAGTGGTATGAC+TGG - chr1_3:5387050-5387069 Msa0099270:intron 45.0%
!! TTTATCATTGGCTCATGGCC+AGG - chr1_3:5387099-5387118 Msa0099270:intron 45.0%
CCACACTTCATGTGTAATCC+TGG + chr1_3:5387120-5387139 None:intergenic 45.0%
CCAGGATTACACATGAAGTG+TGG - chr1_3:5387117-5387136 Msa0099270:intron 45.0%
CATGAAGTGTGGACAAATGC+GGG - chr1_3:5387128-5387147 Msa0099270:intron 45.0%
CCATGTGTAATCCTGAGTGT+GGG + chr1_3:5387157-5387176 None:intergenic 45.0%
TCCATGTGTAATCCTGAGTG+TGG + chr1_3:5387158-5387177 None:intergenic 45.0%
TCAGGATTACACATGGAGTG+TGG - chr1_3:5387161-5387180 Msa0099270:intron 45.0%
CATGGAGTGTGGACAAATTC+GGG - chr1_3:5387172-5387191 Msa0099270:intron 45.0%
! ATGGTTATTGGCTAGGAAGG+CGG + chr1_3:5387453-5387472 None:intergenic 45.0%
! GCAATGGTTATTGGCTAGGA+AGG + chr1_3:5387456-5387475 None:intergenic 45.0%
! CTTGGCAATGGTTATTGGCT+AGG + chr1_3:5387460-5387479 None:intergenic 45.0%
GGTGTAGCATGTAACGCTTT+GGG + chr1_3:5387567-5387586 None:intergenic 45.0%
TGGTGTAGCATGTAACGCTT+TGG + chr1_3:5387568-5387587 None:intergenic 45.0%
TAACAACATCCCATATGGCC+AGG - chr1_3:5387683-5387702 Msa0099270:CDS 45.0%
!! TTTATCCATGCTCTGGAGTC+TGG + chr1_3:5387721-5387740 None:intergenic 45.0%
ACCCGTATTTATCCATGCTC+TGG + chr1_3:5387728-5387747 None:intergenic 45.0%
CCTTCCTGTCTGGATATCTT+GGG + chr1_3:5387952-5387971 None:intergenic 45.0%
ACCTTCCTGTCTGGATATCT+TGG + chr1_3:5387953-5387972 None:intergenic 45.0%
!! TGATGATGGTATGTCTCACG+TGG - chr1_3:5388295-5388314 Msa0099270:intron 45.0%
! GTTTTTATGCTGGGAGGGAA+AGG - chr1_3:5388600-5388619 Msa0099270:intron 45.0%
GTGTTGAGAAAGAGGAAAGC+GGG - chr1_3:5388798-5388817 Msa0099270:intron 45.0%
ACAATCATCTGGCAGTCAGT+GGG - chr1_3:5389189-5389208 Msa0099270:CDS 45.0%
TCACTCATGAGCAAACTTCG+TGG - chr1_3:5389235-5389254 Msa0099270:CDS 45.0%
CGGTTTCAGGCTGCAATTTA+TGG + chr1_3:5389459-5389478 None:intergenic 45.0%
ATTGTGTCCGATTAGGACTG+GGG - chr1_3:5389556-5389575 Msa0099270:intron 45.0%
!! GTTTTAGCCCCAGTCCTAAT+CGG + chr1_3:5389566-5389585 None:intergenic 45.0%
TGGTATCAGAGCCTATCCAT+TGG - chr1_3:5389811-5389830 Msa0099270:intron 45.0%
GGTATCAGAGCCTATCCATT+GGG - chr1_3:5389812-5389831 Msa0099270:intron 45.0%
TGGTACGATTCCCAATGGAT+AGG + chr1_3:5389825-5389844 None:intergenic 45.0%
TGAGATTGCACACCTCTTTG+TGG - chr1_3:5389904-5389923 Msa0099270:intron 45.0%
GAGATTGCACACCTCTTTGT+GGG - chr1_3:5389905-5389924 Msa0099270:intron 45.0%
! CTCTTTGTGGGCTATGGAAT+CGG - chr1_3:5389917-5389936 Msa0099270:intron 45.0%
TAAGAAAAAATGTGGGGGCG+GGG + chr1_3:5390097-5390116 None:intergenic 45.0%
GTAAGAAAAAATGTGGGGGC+GGG + chr1_3:5390098-5390117 None:intergenic 45.0%
AAGGCAAGCTGTTGGATTCT+TGG - chr1_3:5390543-5390562 Msa0099270:intron 45.0%
ACATTCATGGCCCATGATTC+AGG + chr1_3:5390854-5390873 None:intergenic 45.0%
TGAACAACCATGTCAGGCAT+TGG + chr1_3:5390993-5391012 None:intergenic 45.0%
AACACAGAGTGTGTCCAATG+AGG - chr1_3:5391291-5391310 Msa0099270:intron 45.0%
TTCATAGTTCCCCTTGCTTG+CGG - chr1_3:5391543-5391562 Msa0099270:intron 45.0%
TCTACATCTTCGGCAGAGAA+AGG + chr1_3:5391602-5391621 None:intergenic 45.0%
CTCTGCCGAAGATGTAGATA+TGG - chr1_3:5391604-5391623 Msa0099270:intron 45.0%
TCTCGTCCAGATCTATAGGA+GGG + chr1_3:5391634-5391653 None:intergenic 45.0%
ATCTCGTCCAGATCTATAGG+AGG + chr1_3:5391635-5391654 None:intergenic 45.0%
TGTAAGCTTGACGTCCTCTT+TGG - chr1_3:5391926-5391945 Msa0099270:exon 45.0%
!!! TGCTTTTACCTGGAGCATTG+TGG - chr1_3:5392078-5392097 Msa0099270:five_prime_UTR 45.0%
!!! TTTTTTTTTGTTTTTTTTTT+TGG - chr1_3:5371962-5371981 Msa0099270:intron 5.0%
!!! TTTTTTTGTAAATTTTTTTA+GGG + chr1_3:5373722-5373741 None:intergenic 5.0%
!! TTAAGTAAATATTAAAATAT+AGG + chr1_3:5374141-5374160 None:intergenic 5.0%
!!! TAAATATTTTCATAAAAAAT+TGG + chr1_3:5375300-5375319 None:intergenic 5.0%
!!! ATTTTTATTTATTTTTTGAA+CGG - chr1_3:5387218-5387237 Msa0099270:intron 5.0%
!!! TAAAAAAAAATCATTTATTT+TGG - chr1_3:5389981-5390000 Msa0099270:intron 5.0%
! AGGTTCAACGGTTTGGGTTC+CGG - chr1_3:5370678-5370697 Msa0099270:three_prime_UTR 50.0%
! AACGGTTTGGGTTCCGGATA+AGG - chr1_3:5370684-5370703 Msa0099270:three_prime_UTR 50.0%
TTCCGGATAAGGAAGTAGCG+TGG - chr1_3:5370695-5370714 Msa0099270:three_prime_UTR 50.0%
TCCGGATAAGGAAGTAGCGT+GGG - chr1_3:5370696-5370715 Msa0099270:three_prime_UTR 50.0%
ACCCACGCTACTTCCTTATC+CGG + chr1_3:5370700-5370719 None:intergenic 50.0%
!! TGTGCAGGTTGTTGTTTCCC+CGG - chr1_3:5370870-5370889 Msa0099270:exon 50.0%
GATGCGGATGAAGATGAGCT+TGG - chr1_3:5370910-5370929 Msa0099270:CDS 50.0%
TGCACCACCGAAACTTCTGA+TGG - chr1_3:5371059-5371078 Msa0099270:intron 50.0%
CCTTCCATCAGAAGTTTCGG+TGG + chr1_3:5371066-5371085 None:intergenic 50.0%
CCACCGAAACTTCTGATGGA+AGG - chr1_3:5371063-5371082 Msa0099270:intron 50.0%
CTTTATTGTTGTAGGGGGCG+GGG - chr1_3:5371752-5371771 Msa0099270:intron 50.0%
TTTAGGTGAGTCGAGTCTGG+GGG - chr1_3:5372082-5372101 Msa0099270:intron 50.0%
TGAAACCCCTCTGAGTCTTG+GGG + chr1_3:5372121-5372140 None:intergenic 50.0%
GTGAAACCCCTCTGAGTCTT+GGG + chr1_3:5372122-5372141 None:intergenic 50.0%
AGTGAAACCCCTCTGAGTCT+TGG + chr1_3:5372123-5372142 None:intergenic 50.0%
AGACTCAGAGGGGTTTCACT+TGG - chr1_3:5372123-5372142 Msa0099270:intron 50.0%
GACTCAGAGGGGTTTCACTT+GGG - chr1_3:5372124-5372143 Msa0099270:intron 50.0%
! TTCATACACCACAAGGGCGT+GGG + chr1_3:5372377-5372396 None:intergenic 50.0%
ATTCATACACCACAAGGGCG+TGG + chr1_3:5372378-5372397 None:intergenic 50.0%
ATCATACGGCCAACGTAGGT+TGG + chr1_3:5372420-5372439 None:intergenic 50.0%
CCGCAATTGACAACACTGCA+TGG - chr1_3:5372668-5372687 Msa0099270:intron 50.0%
!! TGGAGGCATTTGGCAATGCA+AGG - chr1_3:5373568-5373587 Msa0099270:intron 50.0%
GCAGTGACCCAGTAGAATCT+TGG + chr1_3:5373960-5373979 None:intergenic 50.0%
GTCACTGCTATCAGACCACT+TGG - chr1_3:5373972-5373991 Msa0099270:intron 50.0%
! GATTTGGAGCGTGATCCAAG+TGG + chr1_3:5373990-5374009 None:intergenic 50.0%
CTTTACGAGAGGTAGGTGTG+TGG - chr1_3:5374017-5374036 Msa0099270:intron 50.0%
! GTAAGTTCTGATGGCAGCAC+CGG + chr1_3:5374527-5374546 None:intergenic 50.0%
!! AGTTGTGCAGATAACGGACC+CGG - chr1_3:5374564-5374583 Msa0099270:intron 50.0%
ATCAGTTGTGCGCCTCTGAA+AGG - chr1_3:5374608-5374627 Msa0099270:intron 50.0%
! TCAGTTGTGCGCCTCTGAAA+GGG - chr1_3:5374609-5374628 Msa0099270:intron 50.0%
CATAAAGACGAGGAGGGCAA+TGG - chr1_3:5374890-5374909 Msa0099270:intron 50.0%
! GATGAGTCGTGCTCTTTTCC+AGG + chr1_3:5375110-5375129 None:intergenic 50.0%
GCACGACTCATCAGTAACGA+AGG - chr1_3:5375118-5375137 Msa0099270:intron 50.0%
! ATTTGCTGGCAGAAAGGGGA+TGG - chr1_3:5375384-5375403 Msa0099270:intron 50.0%
!! TTATTCTGGGGTCAGCTGCT+TGG + chr1_3:5375603-5375622 None:intergenic 50.0%
GTGTGATGTAGACCTACTGC+TGG - chr1_3:5375787-5375806 Msa0099270:intron 50.0%
TGCACAATGTTGCCAGCAGT+AGG + chr1_3:5375802-5375821 None:intergenic 50.0%
GATTGTAATGCTGCGGTTGC+TGG - chr1_3:5375866-5375885 Msa0099270:intron 50.0%
TAAACGCCCAACCGATGCAT+TGG + chr1_3:5376280-5376299 None:intergenic 50.0%
TGACACGTGTCATCGGAGTT+TGG - chr1_3:5377223-5377242 Msa0099270:intron 50.0%
GACACGTGTCATCGGAGTTT+GGG - chr1_3:5377224-5377243 Msa0099270:intron 50.0%
TGCGACATGCCTAGTCCTAA+TGG - chr1_3:5377267-5377286 Msa0099270:CDS 50.0%
GATGAAGCACGGACACCATT+AGG + chr1_3:5377285-5377304 None:intergenic 50.0%
TTGGCACGACCTGCTTATCT+AGG - chr1_3:5377524-5377543 Msa0099270:intron 50.0%
AGAATTTCCGGTCTCACCCT+AGG - chr1_3:5378159-5378178 Msa0099270:intron 50.0%
ACCTTTCCGATGCCAACCTA+GGG + chr1_3:5378178-5378197 None:intergenic 50.0%
AACCTTTCCGATGCCAACCT+AGG + chr1_3:5378179-5378198 None:intergenic 50.0%
GGGAAAAGACCGGACACAAA+AGG + chr1_3:5378424-5378443 None:intergenic 50.0%
!! ATGCGGCTCTGTTGACTTGA+GGG + chr1_3:5378705-5378724 None:intergenic 50.0%
!! AATGCGGCTCTGTTGACTTG+AGG + chr1_3:5378706-5378725 None:intergenic 50.0%
! GCCCGGAAATTTTGGATGGA+AGG - chr1_3:5379326-5379345 Msa0099270:intron 50.0%
TGGCCGAATCAGATCAGACT+GGG - chr1_3:5379580-5379599 Msa0099270:intron 50.0%
TGCCCCAGTCTGATCTGATT+CGG + chr1_3:5379586-5379605 None:intergenic 50.0%
GTGAGCTCTTGCTCTCTCTT+TGG - chr1_3:5380146-5380165 Msa0099270:intron 50.0%
TAACACAGCAGAGCAGCAAG+TGG + chr1_3:5380192-5380211 None:intergenic 50.0%
!! GGCTGGTCAAATTGGCGTTT+TGG - chr1_3:5380790-5380809 Msa0099270:intron 50.0%
TTTGGACTCCAAACGTGCTG+AGG - chr1_3:5380808-5380827 Msa0099270:intron 50.0%
! CTCCAAACGTGCTGAGGTTT+TGG - chr1_3:5380814-5380833 Msa0099270:intron 50.0%
GTCCAAAACCTCAGCACGTT+TGG + chr1_3:5380819-5380838 None:intergenic 50.0%
! GCCATGATGGGATACAAGGA+AGG - chr1_3:5381016-5381035 Msa0099270:CDS 50.0%
CCCTTCCTTGTATCCCATCA+TGG + chr1_3:5381020-5381039 None:intergenic 50.0%
TACATCAGCCTGGTCCTCAT+AGG - chr1_3:5381510-5381529 Msa0099270:intron 50.0%
! AGCCTGGTCCTCATAGGTTT+TGG - chr1_3:5381516-5381535 Msa0099270:intron 50.0%
! GGTTGGTTACTTGTGGACGA+TGG - chr1_3:5381941-5381960 Msa0099270:intron 50.0%
GGCCTATTGGAGGATGTACA+AGG - chr1_3:5382010-5382029 Msa0099270:intron 50.0%
GGCGGTGTAGACAAGCAAAA+AGG - chr1_3:5382087-5382106 Msa0099270:intron 50.0%
CTTCAGGAGGCCAATGAATC+TGG - chr1_3:5382210-5382229 Msa0099270:intron 50.0%
AATGGCACGATGGTCACATG+AGG - chr1_3:5382512-5382531 Msa0099270:intron 50.0%
TCACGGGCAGATCTAACACT+AGG + chr1_3:5382641-5382660 None:intergenic 50.0%
CTGCCCGTGAGTTAATTAGC+TGG - chr1_3:5382651-5382670 Msa0099270:intron 50.0%
GAGGTGGCATGGAATAGTCT+AGG - chr1_3:5383468-5383487 Msa0099270:intron 50.0%
TGGCTGTTGAGATATTCCCC+AGG - chr1_3:5383726-5383745 Msa0099270:intron 50.0%
TACGGGATTTCTCTCAGTGC+GGG + chr1_3:5385160-5385179 None:intergenic 50.0%
TGACATGCCTGGCGTAAAAG+AGG + chr1_3:5385301-5385320 None:intergenic 50.0%
CAGCGTTATACTGGACAGTC+TGG - chr1_3:5386198-5386217 Msa0099270:intron 50.0%
ACTCACATTCCCAGTTCTGC+TGG + chr1_3:5386229-5386248 None:intergenic 50.0%
! GGGAAAACAGAGCACTTTCC+TGG - chr1_3:5386721-5386740 Msa0099270:CDS 50.0%
GCCATTCAGAGATGAGGAAG+AGG - chr1_3:5386857-5386876 Msa0099270:intron 50.0%
GCCTCTTCCTCATCTCTGAA+TGG + chr1_3:5386861-5386880 None:intergenic 50.0%
!!! GGGGTTTTTGGGTGGAAAAC+AGG + chr1_3:5386904-5386923 None:intergenic 50.0%
! GTTGTTTCCTTGTGACCTCG+AGG - chr1_3:5386997-5387016 Msa0099270:intron 50.0%
AACAGCCTCTCTGTTTGCAG+TGG - chr1_3:5387041-5387060 Msa0099270:intron 50.0%
CCCACACTCAGGATTACACA+TGG - chr1_3:5387154-5387173 Msa0099270:intron 50.0%
! TGGTTATTGGCTAGGAAGGC+GGG + chr1_3:5387452-5387471 None:intergenic 50.0%
AACATCCCATATGGCCAGGA+GGG - chr1_3:5387687-5387706 Msa0099270:CDS 50.0%
TGGACCCAAGATATCCAGAC+AGG - chr1_3:5387945-5387964 Msa0099270:intron 50.0%
CCCAAGATATCCAGACAGGA+AGG - chr1_3:5387949-5387968 Msa0099270:intron 50.0%
TGATGGTATGTCTCACGTGG+AGG - chr1_3:5388298-5388317 Msa0099270:intron 50.0%
! CACTGACTGCCAGATGATTG+TGG + chr1_3:5389190-5389209 None:intergenic 50.0%
CACAATCATCTGGCAGTCAG+TGG - chr1_3:5389188-5389207 Msa0099270:CDS 50.0%
CAATCATCTGGCAGTCAGTG+GGG - chr1_3:5389190-5389209 Msa0099270:CDS 50.0%
TCCTCACACCCAACACTCTA+GGG + chr1_3:5389867-5389886 None:intergenic 50.0%
! TTGGGTGTGAGGAGGTGTAT+TGG - chr1_3:5389874-5389893 Msa0099270:intron 50.0%
! TGGGTGTGAGGAGGTGTATT+GGG - chr1_3:5389875-5389894 Msa0099270:intron 50.0%
CGATTCCATAGCCCACAAAG+AGG + chr1_3:5389919-5389938 None:intergenic 50.0%
GAAATCTGGTCTCGCAGAAC+TGG - chr1_3:5390381-5390400 Msa0099270:intron 50.0%
GTCTCGCAGAACTGGAGAAA+TGG - chr1_3:5390389-5390408 Msa0099270:intron 50.0%
GATTCGACAGGACCTTTGTC+CGG - chr1_3:5390693-5390712 Msa0099270:intron 50.0%
GCGCGCAATGTCATATTAGC+AGG - chr1_3:5390737-5390756 Msa0099270:intron 50.0%
AGTTGCGATCGCCTGAATCA+TGG - chr1_3:5390840-5390859 Msa0099270:intron 50.0%
GTTGCGATCGCCTGAATCAT+GGG - chr1_3:5390841-5390860 Msa0099270:intron 50.0%
GGCAATCCCTCCTATAGATC+TGG - chr1_3:5391625-5391644 Msa0099270:intron 50.0%
ATAGGACACCACAATGCTCC+AGG + chr1_3:5392089-5392108 None:intergenic 50.0%
! CGTGTTGCTCAACCCAACCA+CGG - chr1_3:5370499-5370518 Msa0099270:three_prime_UTR 55.0%
CAACGCACTTTCTCACAGCG+CGG - chr1_3:5370569-5370588 Msa0099270:three_prime_UTR 55.0%
AACGCACTTTCTCACAGCGC+GGG - chr1_3:5370570-5370589 Msa0099270:three_prime_UTR 55.0%
GCGGATGAAGATGAGCTTGG+TGG - chr1_3:5370913-5370932 Msa0099270:CDS 55.0%
! CTTCTGATGGAAGGCGTGTC+CGG - chr1_3:5371072-5371091 Msa0099270:intron 55.0%
CCTTGCCAAGACTTGAACCC+TGG + chr1_3:5371842-5371861 None:intergenic 55.0%
CCAGGGTTCAAGTCTTGGCA+AGG - chr1_3:5371839-5371858 Msa0099270:intron 55.0%
!! CCAACGTAGGTTGGTCTCGA+TGG + chr1_3:5372411-5372430 None:intergenic 55.0%
CCATCGAGACCAACCTACGT+TGG - chr1_3:5372408-5372427 Msa0099270:CDS 55.0%
! TGTGGGCTAAGCTCACCCAA+TGG + chr1_3:5373126-5373145 None:intergenic 55.0%
!! TTTGTTGGTGGTCGTACCGG+TGG - chr1_3:5373388-5373407 Msa0099270:CDS 55.0%
AGGCATCAGTCACGAGGATC+AGG - chr1_3:5374920-5374939 Msa0099270:intron 55.0%
GTAATGCTGCGGTTGCTGGT+CGG - chr1_3:5375870-5375889 Msa0099270:intron 55.0%
TAATGCTGCGGTTGCTGGTC+GGG - chr1_3:5375871-5375890 Msa0099270:intron 55.0%
TCGCAGTATCCGACACGCAT+CGG + chr1_3:5377252-5377271 None:intergenic 55.0%
GCACGGACACCATTAGGACT+AGG + chr1_3:5377279-5377298 None:intergenic 55.0%
TTTCCGGTCTCACCCTAGGT+TGG - chr1_3:5378163-5378182 Msa0099270:intron 55.0%
ATGCCAACCTAGGGTGAGAC+CGG + chr1_3:5378169-5378188 None:intergenic 55.0%
! GTCTCACCCTAGGTTGGCAT+CGG - chr1_3:5378169-5378188 Msa0099270:intron 55.0%
! ACCCTAGGTTGGCATCGGAA+AGG - chr1_3:5378174-5378193 Msa0099270:intron 55.0%
AACACCGATGCTTGATGCGG+CGG - chr1_3:5378981-5379000 Msa0099270:intron 55.0%
TGTACCGCCGCATCAAGCAT+CGG + chr1_3:5378988-5379007 None:intergenic 55.0%
! AGGGCGTCCTTGAAGCTGTT+CGG - chr1_3:5379236-5379255 Msa0099270:intron 55.0%
GCTGTTCGGATAAGTCTGGC+AGG - chr1_3:5379250-5379269 Msa0099270:intron 55.0%
AGGACTACAGGAGCTACACG+AGG - chr1_3:5379536-5379555 Msa0099270:intron 55.0%
CTGGCCGAATCAGATCAGAC+TGG - chr1_3:5379579-5379598 Msa0099270:intron 55.0%
GGCCGAATCAGATCAGACTG+GGG - chr1_3:5379581-5379600 Msa0099270:intron 55.0%
CTTCTGGACTCCACCGACAA+TGG + chr1_3:5379858-5379877 None:intergenic 55.0%
AGCAGCTGCAGTTTCCCTTC+AGG - chr1_3:5380907-5380926 Msa0099270:CDS 55.0%
ACCTCTGCAGCATGCCTGAA+GGG + chr1_3:5380924-5380943 None:intergenic 55.0%
AACCTCTGCAGCATGCCTGA+AGG + chr1_3:5380925-5380944 None:intergenic 55.0%
!! ACGGAGGGCACCAGATTCAT+TGG + chr1_3:5382223-5382242 None:intergenic 55.0%
CTCGGGCGAATACTCTTACG+TGG + chr1_3:5384923-5384942 None:intergenic 55.0%
CGATGAGAGTCTGACATGCC+TGG + chr1_3:5385312-5385331 None:intergenic 55.0%
GTCATCAGCAGATAGGCACC+AGG - chr1_3:5385338-5385357 Msa0099270:intron 55.0%
! TCTGGCTTGACCAGCAGAAC+TGG - chr1_3:5386216-5386235 Msa0099270:intron 55.0%
! CTGGCTTGACCAGCAGAACT+GGG - chr1_3:5386217-5386236 Msa0099270:intron 55.0%
GCACAAGGCTCATCCTCTGA+TGG + chr1_3:5386968-5386987 None:intergenic 55.0%
AGGTTGACCTCGAGGTCACA+AGG + chr1_3:5387007-5387026 None:intergenic 55.0%
!! AATTCGGGTTGCCCACACTC+AGG - chr1_3:5387187-5387206 Msa0099270:intron 55.0%
! GGTTATTGGCTAGGAAGGCG+GGG + chr1_3:5387451-5387470 None:intergenic 55.0%
CAACATCCCATATGGCCAGG+AGG - chr1_3:5387686-5387705 Msa0099270:CDS 55.0%
! CCATGCGCCCTTCCTGTTTT+GGG + chr1_3:5389133-5389152 None:intergenic 55.0%
! ACCATGCGCCCTTCCTGTTT+TGG + chr1_3:5389134-5389153 None:intergenic 55.0%
! AAAACAGGAAGGGCGCATGG+TGG - chr1_3:5389133-5389152 Msa0099270:intron 55.0%
! AAACAGGAAGGGCGCATGGT+GGG - chr1_3:5389134-5389153 Msa0099270:intron 55.0%
GATTGTGGAGAGAGCCCAAC+AGG + chr1_3:5389175-5389194 None:intergenic 55.0%
GGGCTCTCTCCACAATCATC+TGG - chr1_3:5389178-5389197 Msa0099270:CDS 55.0%
!! ACACTCTAGGGCCTAGTGCA+TGG + chr1_3:5389855-5389874 None:intergenic 55.0%
TGCACTAGGCCCTAGAGTGT+TGG - chr1_3:5389855-5389874 Msa0099270:intron 55.0%
! GCACTAGGCCCTAGAGTGTT+GGG - chr1_3:5389856-5389875 Msa0099270:intron 55.0%
CTCCTCACACCCAACACTCT+AGG + chr1_3:5389868-5389887 None:intergenic 55.0%
!! CTAGAGTGTTGGGTGTGAGG+AGG - chr1_3:5389866-5389885 Msa0099270:intron 55.0%
! GCACACCTCTTTGTGGGCTA+TGG - chr1_3:5389911-5389930 Msa0099270:intron 55.0%
! TTGAGTTGTGACGGTGCCGG+AGG - chr1_3:5370844-5370863 Msa0099270:three_prime_UTR 60.0%
TATTGTTGTAGGGGGCGGGG+CGG - chr1_3:5371755-5371774 Msa0099270:intron 60.0%
GGGGGGTTGGGTAGCTCAAT+TGG - chr1_3:5371777-5371796 Msa0099270:intron 60.0%
AGTCGAGTCTGGGGGCTTAC+TGG - chr1_3:5372090-5372109 Msa0099270:intron 60.0%
GTCGAGTCTGGGGGCTTACT+GGG - chr1_3:5372091-5372110 Msa0099270:intron 60.0%
GGCAGACCCCAAGACTCAGA+GGG - chr1_3:5372112-5372131 Msa0099270:intron 60.0%
GCAGACCCCAAGACTCAGAG+GGG - chr1_3:5372113-5372132 Msa0099270:intron 60.0%
GTAAGCGGTGAAAGTGGCGC+TGG - chr1_3:5373325-5373344 Msa0099270:intron 60.0%
GGTTGCTGGTCGGGATGCTT+TGG - chr1_3:5375880-5375899 Msa0099270:intron 60.0%
!! GTTTGGGCACCGATGCGTGT+CGG - chr1_3:5377240-5377259 Msa0099270:CDS 60.0%
AGCGCTTCACTGCGTCATGC+AGG - chr1_3:5378312-5378331 Msa0099270:intron 60.0%
TCCCTTCAGGCATGCTGCAG+AGG - chr1_3:5380920-5380939 Msa0099270:CDS 60.0%
TGAATCTGGTGCCCTCCGTC+TGG - chr1_3:5382224-5382243 Msa0099270:intron 60.0%
CTCTCAGTGCGGGAGGCAAT+TGG + chr1_3:5385150-5385169 None:intergenic 60.0%
GGGATTTCTCTCAGTGCGGG+AGG + chr1_3:5385157-5385176 None:intergenic 60.0%
AATGCGGGTAGCCCACACTC+AGG - chr1_3:5387143-5387162 Msa0099270:intron 60.0%
GGGTTGCCCACACTCAGGAT+TGG - chr1_3:5387192-5387211 Msa0099270:intron 60.0%
ACCAGCCCTCCTGGCCATAT+GGG + chr1_3:5387695-5387714 None:intergenic 60.0%
GTCGTCCAGACTCCAGAGCA+TGG - chr1_3:5387713-5387732 Msa0099270:CDS 60.0%
! CCCAAAACAGGAAGGGCGCA+TGG - chr1_3:5389130-5389149 Msa0099270:intron 60.0%
!! GCCCTAGAGTGTTGGGTGTG+AGG - chr1_3:5389863-5389882 Msa0099270:intron 60.0%
GGGGGCGGGGAAATAGATCA+TGG + chr1_3:5390084-5390103 None:intergenic 60.0%
! CGGTGCCGGAGGAATTGTGC+AGG - chr1_3:5370855-5370874 Msa0099270:three_prime_UTR 65.0%
ATTGTTGTAGGGGGCGGGGC+GGG - chr1_3:5371756-5371775 Msa0099270:intron 65.0%
GGGCAGACCCCAAGACTCAG+AGG - chr1_3:5372111-5372130 Msa0099270:intron 65.0%
GAGTTGAGCCCACGCCCTTG+TGG - chr1_3:5372366-5372385 Msa0099270:intron 65.0%
TCCCATATGGCCAGGAGGGC+TGG - chr1_3:5387691-5387710 Msa0099270:CDS 65.0%
GACCAGCCCTCCTGGCCATA+TGG + chr1_3:5387696-5387715 None:intergenic 65.0%
TTGTTGTAGGGGGCGGGGCG+GGG - chr1_3:5371757-5371776 Msa0099270:intron 70.0%
GTCTGGACGACCAGCCCTCC+TGG + chr1_3:5387704-5387723 None:intergenic 70.0%
TGTTGTAGGGGGCGGGGCGG+GGG - chr1_3:5371758-5371777 Msa0099270:intron 75.0%
! GTTGTAGGGGGCGGGGCGGG+GGG - chr1_3:5371759-5371778 Msa0099270:intron 80.0%
! TTGTAGGGGGCGGGGCGGGG+GGG - chr1_3:5371760-5371779 Msa0099270:intron 80.0%
! AGGGGGCGGGGCGGGGGGGT+TGG - chr1_3:5371764-5371783 Msa0099270:intron 90.0%
! GGGGGCGGGGCGGGGGGGTT+GGG - chr1_3:5371765-5371784 Msa0099270:intron 90.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 5370434 5392159 5370434 ID=Msa0099270;Name=Msa0099270
chr1_3 mRNA 5370434 5392159 5370434 ID=Msa0099270-mRNA-1;Parent=Msa0099270;Name=Msa0099270-mRNA-1;_AED=0.15;_eAED=0.15;_QI=230|0.94|1|1|1|1|36|441|1433
chr1_3 exon 5370434 5370998 5370434 ID=Msa0099270-mRNA-1:exon:2056;Parent=Msa0099270-mRNA-1
chr1_3 exon 5371110 5371192 5371110 ID=Msa0099270-mRNA-1:exon:2055;Parent=Msa0099270-mRNA-1
chr1_3 exon 5371281 5371361 5371281 ID=Msa0099270-mRNA-1:exon:2054;Parent=Msa0099270-mRNA-1
chr1_3 exon 5371879 5371935 5371879 ID=Msa0099270-mRNA-1:exon:2053;Parent=Msa0099270-mRNA-1
chr1_3 exon 5372029 5372085 5372029 ID=Msa0099270-mRNA-1:exon:2052;Parent=Msa0099270-mRNA-1
chr1_3 exon 5372161 5372260 5372161 ID=Msa0099270-mRNA-1:exon:2051;Parent=Msa0099270-mRNA-1
chr1_3 exon 5372385 5372455 5372385 ID=Msa0099270-mRNA-1:exon:2050;Parent=Msa0099270-mRNA-1
chr1_3 exon 5373329 5373466 5373329 ID=Msa0099270-mRNA-1:exon:2049;Parent=Msa0099270-mRNA-1
chr1_3 exon 5374154 5374330 5374154 ID=Msa0099270-mRNA-1:exon:2048;Parent=Msa0099270-mRNA-1
chr1_3 exon 5376351 5376503 5376351 ID=Msa0099270-mRNA-1:exon:2047;Parent=Msa0099270-mRNA-1
chr1_3 exon 5376698 5376868 5376698 ID=Msa0099270-mRNA-1:exon:2046;Parent=Msa0099270-mRNA-1
chr1_3 exon 5377234 5377323 5377234 ID=Msa0099270-mRNA-1:exon:2045;Parent=Msa0099270-mRNA-1
chr1_3 exon 5377411 5377458 5377411 ID=Msa0099270-mRNA-1:exon:2044;Parent=Msa0099270-mRNA-1
chr1_3 exon 5377629 5377740 5377629 ID=Msa0099270-mRNA-1:exon:2043;Parent=Msa0099270-mRNA-1
chr1_3 exon 5377955 5378094 5377955 ID=Msa0099270-mRNA-1:exon:2042;Parent=Msa0099270-mRNA-1
chr1_3 exon 5379591 5379812 5379591 ID=Msa0099270-mRNA-1:exon:2041;Parent=Msa0099270-mRNA-1
chr1_3 exon 5380279 5380377 5380279 ID=Msa0099270-mRNA-1:exon:2040;Parent=Msa0099270-mRNA-1
chr1_3 exon 5380463 5380582 5380463 ID=Msa0099270-mRNA-1:exon:2039;Parent=Msa0099270-mRNA-1
chr1_3 exon 5380840 5381045 5380840 ID=Msa0099270-mRNA-1:exon:2038;Parent=Msa0099270-mRNA-1
chr1_3 exon 5381652 5381829 5381652 ID=Msa0099270-mRNA-1:exon:2037;Parent=Msa0099270-mRNA-1
chr1_3 exon 5381942 5382002 5381942 ID=Msa0099270-mRNA-1:exon:2036;Parent=Msa0099270-mRNA-1
chr1_3 exon 5383246 5383355 5383246 ID=Msa0099270-mRNA-1:exon:2035;Parent=Msa0099270-mRNA-1
chr1_3 exon 5383785 5383916 5383785 ID=Msa0099270-mRNA-1:exon:2034;Parent=Msa0099270-mRNA-1
chr1_3 exon 5384086 5384259 5384086 ID=Msa0099270-mRNA-1:exon:2033;Parent=Msa0099270-mRNA-1
chr1_3 exon 5384355 5384481 5384355 ID=Msa0099270-mRNA-1:exon:2032;Parent=Msa0099270-mRNA-1
chr1_3 exon 5384574 5384611 5384574 ID=Msa0099270-mRNA-1:exon:2031;Parent=Msa0099270-mRNA-1
chr1_3 exon 5385950 5386007 5385950 ID=Msa0099270-mRNA-1:exon:2030;Parent=Msa0099270-mRNA-1
chr1_3 exon 5386465 5386566 5386465 ID=Msa0099270-mRNA-1:exon:2029;Parent=Msa0099270-mRNA-1
chr1_3 exon 5386660 5386806 5386660 ID=Msa0099270-mRNA-1:exon:2028;Parent=Msa0099270-mRNA-1
chr1_3 exon 5387407 5387543 5387407 ID=Msa0099270-mRNA-1:exon:2027;Parent=Msa0099270-mRNA-1
chr1_3 exon 5387652 5387801 5387652 ID=Msa0099270-mRNA-1:exon:2026;Parent=Msa0099270-mRNA-1
chr1_3 exon 5387963 5388119 5387963 ID=Msa0099270-mRNA-1:exon:2025;Parent=Msa0099270-mRNA-1
chr1_3 exon 5388980 5389038 5388980 ID=Msa0099270-mRNA-1:exon:2024;Parent=Msa0099270-mRNA-1
chr1_3 exon 5389149 5389305 5389149 ID=Msa0099270-mRNA-1:exon:2023;Parent=Msa0099270-mRNA-1
chr1_3 exon 5389418 5389563 5389418 ID=Msa0099270-mRNA-1:exon:2022;Parent=Msa0099270-mRNA-1
chr1_3 exon 5391810 5392159 5391810 ID=Msa0099270-mRNA-1:exon:2021;Parent=Msa0099270-mRNA-1
chr1_3 five_prime_UTR 5391930 5392159 5391930 ID=Msa0099270-mRNA-1:five_prime_utr;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5391810 5391929 5391810 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5389418 5389563 5389418 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5389149 5389305 5389149 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5388980 5389038 5388980 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5387963 5388119 5387963 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5387652 5387801 5387652 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5387407 5387543 5387407 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5386660 5386806 5386660 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5386465 5386566 5386465 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5385950 5386007 5385950 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5384574 5384611 5384574 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5384355 5384481 5384355 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5384086 5384259 5384086 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5383785 5383916 5383785 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5383246 5383355 5383246 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5381942 5382002 5381942 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5381652 5381829 5381652 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5380840 5381045 5380840 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5380463 5380582 5380463 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5380279 5380377 5380279 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5379591 5379812 5379591 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5377955 5378094 5377955 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5377629 5377740 5377629 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5377411 5377458 5377411 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5377234 5377323 5377234 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5376698 5376868 5376698 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5376351 5376503 5376351 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5374154 5374330 5374154 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5373329 5373466 5373329 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5372385 5372455 5372385 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5372161 5372260 5372161 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5372029 5372085 5372029 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5371879 5371935 5371879 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5371281 5371361 5371281 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5371110 5371192 5371110 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 CDS 5370875 5370998 5370875 ID=Msa0099270-mRNA-1:cds;Parent=Msa0099270-mRNA-1
chr1_3 three_prime_UTR 5370434 5370874 5370434 ID=Msa0099270-mRNA-1:three_prime_utr;Parent=Msa0099270-mRNA-1
Gene Sequence

>Msa0099270

ATGAATGTACGCAAAGGTTCAACGGTTTGGGTTCCGGATAAGGAAGTAGCGTGGGTAGCTGCTGAAGTAATCGATTCTGATGATAATTCCGTTCATCTTGTAACTGATTCCGGCAAGAAGACATATACAGGGAGCATTTTAATAGCCGTTAATCCCTTCACCAAGCTTCCTCATTTGTATGATAACCATATGATGGAACAGTATAAAGGAGCTCCATTGGGTGAGCTTAGCCCACATGTTTTTGCTGTTGCTGATGCATCTTATAGAGCAATGATGAATGAAGGTAAAAGTCAATCTATCTTGGTAAGCGGTGAAAGTGGCGCTGGAAAAACTGAGACTACAAAATTGATTATGCAATATCTTACTTTTGTTGGTGGTCGTACCGGTGGTGATGATAGAACAGTCGAACAACAAGTTCTTGAATCAAATCCACTTTTGGAGGCATTTGGCAATGCAAGGACTGTTAGGAACGACAATTCAAGTCGTTTTGGGAAGTTTGTTGAAATTCAGTTTGATAGAAATGGTAGAATGTCCGGTGCTGCCATCAGAACTTACTTATTAGAAAGATCACGAGTTGTGCAGATAACGGACCCGGAAAGAAATTATCACTGCTTCTATCAGTTGTGCGCCTCTGAAAGGGATGCAAAGGAGTATAAATTAGGACACCCAAGTCATTTCCATTATTTAAATCAAAGTAAAATCTATGAACTAAACGGTGTAAGCAATGCTGAAGAATACATAAAGACGAGGAGGGCAATGGATATTGTAGGCATCAGTCACGAGGATCAGGAAGCCATATTTCGTGTCTTAGCTGCGATTTTGCACTTGGGAAATGTTGAATTTTCTCCTGGAAAAGAGCACGACTCATCAGTAACGAAGGATGAAAAATCAAGATTTCATATGCAGATGGCTGCTGATCTTTTTATGTGTGATGTAGACCTACTGCTGGCAACATTGTGCACTCGAACAATACAAACTCGAGAAGGAAATATTGTCAAGGCTCTTGATTGTAATGCTGCGGTTGCTGGTCGGGATGCTTTGGCAAAAACTGTTTATGCTCGTTTATTTGATTGGCTCGTTGATAAGATCAATAGGTCTGTCGGACAAGATGTCAATTCCCAGATGCAAATTGGAGTTTTGGATATTTATGGTTTTGAGTGCTTTAAGGATAATAGTTTTGAGCAATTCTGTATCAATTTTGCAAATGAAAAGCTTCAGCAACATTTTAATGAGAAACCCATTGGTGTCATTGCTCTGTTGGATGAAGCTTGCATGTTTCCAAAATCAACACATGAAACATTCTCTACTAAGTTGTTTCAGAATTTCCGGTCTCACCCTAGGTTGGCATCGGAAAGGTTTTCACAAACAGATTTTATAATTTCTCATTATGCTGGAAAGGTTACATATCATACAGATGCCTTTTTGGACAAAAATCGTGACTATGTTGTTGTAGAACATTGTAATCTATTATCTTCTTCAAATTGCCCTTTTGTGTCCGGTCTTTTCCCTTTGCTACCAGAGGAATCTTCAAGATCATCATACAAGTTTTCTTCAGTAGCTACCAGATTTAAGCAACAACTTCAAGCACTCATGGAGACCCTCAAGTCAACAGAGCCGCATTACATACGATGTGTGAAGCCAAATTCATTGAATCGACCACAAATGTTTGAGAATGCAAGCATCATACACCAATTACGCTGTGGGGGCGTCCTTGAAGCTGTTCGGATAAGTCTGGCAGGTTATCCCACTCGAAGAATGTATTCAGAGTTTGTAGATCGCTATGGATTAATAGGCCCGGAAATTTTGGATGGAAGTTATGATGATAAAGCTGCAACTGAGAAAATTTTGCACAAGCTCAAGCTTGAGAATTTTCAGTTGGGCAGGACCAAAGTATTTCTCAGGGCTGGTCAAATTGGCGTTTTGGACTCCAAACGTGCTGAGGTTTTGGACAACGCTGCTAAGTGTATTCAGTGCCAACTGAGGACATTTATTACACGCAGGCATTTCATTTCAGTAAGAGCAGCTGCAGTTTCCCTTCAGGCATGCTGCAGAGGATACATTGCCCAAAAGATGTATGCAGCTAAAAGGGAAACAGCAGCAGCTATCTCCATTCAAAAGTATATACGTATGAGGCTAACAAGGCATGCATACATGCAACTATATTCTACTGCTATTATCATACAATCGCATATTCGAGGTTTCATTACTCACCGAAGATTCTTGCATGAAAAAGAACACAGAGCTGCTATATCTGTTCAGGCCTATTGGAGGATGTACAAGGTCAGGTCTGCTTTCCAGCAATATCTTGCTTCAGTTGTGGCAATACAATGTCTATGGCGGTGTAGACAAGCAAAAAGGGAGTTTCGTAAACTTAAACAAGAGGCCAATGAATCTGGTGCCCTCCGTCTGGCTAAAACTAAACTTGAGAAGCAATTGGAAGAGCTCACATGGCGTTTGCATCTAGAAAAGAAAATAAGGGTTTCTAATGATGAGGCCAAGCAAAGAGAGAATTCCATGCTTCGAAAAATGTTAGAAGCTCTGAATCTTGAATTAGATGCGGCCAAATTGGCTACGATTAATGAGTGCAACAAGAATGCTGTTCTGCAAAATCAATTGGAATTGTCAGCCAAAGAAAAATCTGCTTTAAAGAGAGAGCTAGTTTCTGTGGCTGAATTACGAAAGGAAAATGCTATGCTAAAGGTTGCACTGGATGCCTTTGAGAAGAAGTACTCATCTTTAGAGCTTGAGCATATAAATGTTCAAAAAGGCCGAGACGAAACGATTGAGAAACTGAGGGAATTTGAACAGAAGTGCTCTCAGCTCGAGCAAAATGTGAAAAGCCTTGAGGAAAAGCTATTGAGTTTTGAGGATGAAAATCGCGTGCTTCGTCAGAAAGCCTTAAGTGCTCCACGTAAGAGTATTCGCCCGAGTTTTGCTAAGTCTTTTTCAGAAAAATACTCAACTCCAATTGCCTCCCGCACTGAGAGAAATCCCGTATTTGAGACACCCACACCCACAAAACTTACTACCTCTTTTACGCCAGGCATGTCAGACTCTCATCGATCTAAGTCATCAGCAGATAGGCACCAGGACAATTATGAATTCCTCTCTAGATGTATCAAAGAGAATTTGGGATTCAAAAATGGTAAACCTATTGCAGCTCGTATCATATACAAATGTCTTCTTCACTGGCATGCTTTTGAATCTGAGCGCACAGCCATTTTTGATTACATTATTGAAGGCATAAATGACGCTCTAAAGGTTAGGGAAGATGATATTGTCTTGCCATATTGGCTGTCCAACACTTCTGCTCTTCTATGCCTCTTACAGAGGAACTTACGTTCAAATGGCTTTTTAGCTACCAATGGTCAGCGTTATACTGGACAGTCTGGCTTGACCAGCAGAACTGGGAATGGACCAAAATCTCCATTTAAGTTTATTGGATATGATGATGGTATGTCTCACGTGGAGGCAAGATATCCAGCTATACTTTTCAAGCAACAACTAACTGCATGTGTTGAGAAAATTTTTGGGCTTCTACGTGATAATTTGAAAAAAGAACTTTCTCCACTTCTGCAACTATGTATTCAGACACCCAAAACAGGAAGGGCGCATGGTGGGAAATCATCTAGATCTCCTGTTGGGCTCTCTCCACAATCATCTGGCAGTCAGTGGGGCAACATTGTCAAATTTTTGGATTCACTCATGAGCAAACTTCGTGGAAATCATGTGCCATCCTTCTTCATTCGTAAACTTGTTACCCAAGTTTTTTCCTTCATCAATATTACACTCTTCAACAGTCTTCTATTGCGTCGTGAATGTTGCACATTCTCCAACGGTGAATATATGAAATCTGGTCTCGCAGAACTGGAGAAATGGATAACCAATGCAAAGGAGATGTATGCAGGAATGTCTTGGCATGAGCTGAATTATATAAGGCAAGCTGTTGGATTCTTGGTAATACATCAGAAGAGGAAAAAATCATTGGAAGAGATTCGACAGGACCTTTGTCCGGCATTGACTGTCAGACAAATCTATCGAATCAGTACTATGTACTGGGATGACAAGTATGGAACACAGAGTGTGTCCAATGAGGTAGTTAGTGTAATGAGGGAAATGGTTAACAAAGACAATCAGAATATGCCCTCTAATTCTTTCCTATTAGATGATGATCTGAGCATTCCTTTCTCTGCCGAAGATGTAGATATGGCAATCCCTCCTATAGATCTGGACGAGATTGATCTCCCAGTATTCGTGTCTGAATATTCTTGCGCACAGTTTCTTAATTCACATCAGCAGTAG
Protein sequence

>Msa0099270

MNVRKGSTVWVPDKEVAWVAAEVIDSDDNSVHLVTDSGKKTYTGSILIAVNPFTKLPHLYDNHMMEQYKGAPLGELSPHVFAVADASYRAMMNEGKSQSILVSGESGAGKTETTKLIMQYLTFVGGRTGGDDRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDRNGRMSGAAIRTYLLERSRVVQITDPERNYHCFYQLCASERDAKEYKLGHPSHFHYLNQSKIYELNGVSNAEEYIKTRRAMDIVGISHEDQEAIFRVLAAILHLGNVEFSPGKEHDSSVTKDEKSRFHMQMAADLFMCDVDLLLATLCTRTIQTREGNIVKALDCNAAVAGRDALAKTVYARLFDWLVDKINRSVGQDVNSQMQIGVLDIYGFECFKDNSFEQFCINFANEKLQQHFNEKPIGVIALLDEACMFPKSTHETFSTKLFQNFRSHPRLASERFSQTDFIISHYAGKVTYHTDAFLDKNRDYVVVEHCNLLSSSNCPFVSGLFPLLPEESSRSSYKFSSVATRFKQQLQALMETLKSTEPHYIRCVKPNSLNRPQMFENASIIHQLRCGGVLEAVRISLAGYPTRRMYSEFVDRYGLIGPEILDGSYDDKAATEKILHKLKLENFQLGRTKVFLRAGQIGVLDSKRAEVLDNAAKCIQCQLRTFITRRHFISVRAAAVSLQACCRGYIAQKMYAAKRETAAAISIQKYIRMRLTRHAYMQLYSTAIIIQSHIRGFITHRRFLHEKEHRAAISVQAYWRMYKVRSAFQQYLASVVAIQCLWRCRQAKREFRKLKQEANESGALRLAKTKLEKQLEELTWRLHLEKKIRVSNDEAKQRENSMLRKMLEALNLELDAAKLATINECNKNAVLQNQLELSAKEKSALKRELVSVAELRKENAMLKVALDAFEKKYSSLELEHINVQKGRDETIEKLREFEQKCSQLEQNVKSLEEKLLSFEDENRVLRQKALSAPRKSIRPSFAKSFSEKYSTPIASRTERNPVFETPTPTKLTTSFTPGMSDSHRSKSSADRHQDNYEFLSRCIKENLGFKNGKPIAARIIYKCLLHWHAFESERTAIFDYIIEGINDALKVREDDIVLPYWLSNTSALLCLLQRNLRSNGFLATNGQRYTGQSGLTSRTGNGPKSPFKFIGYDDGMSHVEARYPAILFKQQLTACVEKIFGLLRDNLKKELSPLLQLCIQTPKTGRAHGGKSSRSPVGLSPQSSGSQWGNIVKFLDSLMSKLRGNHVPSFFIRKLVTQVFSFINITLFNSLLLRRECCTFSNGEYMKSGLAELEKWITNAKEMYAGMSWHELNYIRQAVGFLVIHQKRKKSLEEIRQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEVVSVMREMVNKDNQNMPSNSFLLDDDLSIPFSAEDVDMAIPPIDLDEIDLPVFVSEYSCAQFLNSHQQ*