AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1359880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1359880 MtrunA17_Chr4g0034251 100.000 166 0 0 1 166 1 166 2.30e-116 326
Msa1359880 MtrunA17_Chr8g0373951 59.868 152 61 0 15 166 1 152 4.06e-57 176
Msa1359880 MtrunA17_Chr5g0403141 63.816 152 55 0 15 166 2 153 1.10e-55 172
Msa1359880 MtrunA17_Chr1g0186551 41.722 151 88 0 15 165 1 151 1.01e-31 111
Msa1359880 MtrunA17_Chr1g0186591 44.000 150 82 2 15 163 1 149 2.67e-31 110
Msa1359880 MtrunA17_Chr4g0009521 41.558 154 88 1 15 166 2 155 5.46e-30 107
Msa1359880 MtrunA17_Chr4g0028981 36.424 151 95 1 15 165 35 184 3.66e-24 92.8
Msa1359880 MtrunA17_Chr1g0167831 37.594 133 83 0 15 147 1 133 2.20e-15 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1359880 AT3G50810.3 52.632 152 72 0 15 166 1 152 4.34e-50 158
Msa1359880 AT3G50810.2 52.632 152 72 0 15 166 1 152 4.34e-50 158
Msa1359880 AT3G50810.1 52.632 152 72 0 15 166 1 152 4.34e-50 158
Msa1359880 AT4G37235.1 57.792 154 58 2 15 166 1 149 2.07e-49 156
Msa1359880 AT1G49405.1 57.576 132 55 1 15 146 1 131 5.73e-40 132
Msa1359880 AT3G23200.1 40.397 151 90 0 15 165 1 151 1.25e-31 111
Msa1359880 AT3G53850.1 37.419 155 93 2 15 166 1 154 2.38e-26 98.2
Msa1359880 AT3G53850.2 37.419 155 93 2 15 166 1 154 2.38e-26 98.2
Msa1359880 AT5G02060.1 42.105 152 84 2 15 163 1 151 4.59e-26 97.4
Msa1359880 AT2G28370.1 39.623 159 94 2 7 165 22 178 1.32e-24 94.4
Msa1359880 AT2G37200.1 36.242 149 93 2 15 163 31 177 1.38e-19 81.3
Msa1359880 AT2G37200.2 36.242 149 93 2 15 163 60 206 2.93e-19 81.3
Msa1359880 AT3G23200.2 40.187 107 64 0 59 165 18 124 9.15e-18 75.1
Msa1359880 AT3G53850.3 34.783 138 81 3 37 166 5 141 2.90e-16 71.6

Find 112 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGCTCACAATATGTATT+TGG 0.117469 tig0016788:-13548 Msa1359880:three_prime_UTR
TTCCCTTCTCTTTATGTCTT+TGG 0.136583 tig0016788:-15370 Msa1359880:CDS
TCTACAGCTACACAGCTTTC+TGG 0.190585 tig0016788:-15338 Msa1359880:intron
TTATTCATGTCCTAGCTATT+TGG 0.210283 tig0016788:-14166 Msa1359880:intron
TCCCTTCTCTTTATGTCTTT+GGG 0.218721 tig0016788:-15369 Msa1359880:CDS
TCTTTAATTATGTATGATAA+TGG 0.224272 tig0016788:+15708 None:intergenic
CTTTCAGCTGAAGCTTCTTT+TGG 0.249743 tig0016788:+15524 None:intergenic
TTCATGTAACTTATTCTATA+AGG 0.251103 tig0016788:+15465 None:intergenic
GGAAATTCTGTTTGAATCAT+AGG 0.253973 tig0016788:-15598 Msa1359880:five_prime_UTR
TACCTGCAGCAAAGCTTTAT+AGG 0.287744 tig0016788:+13769 None:intergenic
TGTGTCATGGTTTCTGTCCT+TGG 0.292773 tig0016788:-13722 Msa1359880:CDS
GAAATGCTATTAAATATTAT+AGG 0.297458 tig0016788:-15563 Msa1359880:five_prime_UTR
CAACTATCTCATGGAACATT+TGG 0.310372 tig0016788:+12853 None:intergenic
CATCCTTGAGGCCGAGGCCT+GGG 0.320849 tig0016788:+13149 None:intergenic
CTTTAATTATGTATGATAAT+GGG 0.324399 tig0016788:+15709 None:intergenic
AGATATAACTGTCAAGAATA+TGG 0.335129 tig0016788:+13272 None:intergenic
TGGCAGCAGCTTTGACTTTG+AGG 0.364974 tig0016788:+12481 None:intergenic
AGGCAGCTGCTGCTAGTGTC+AGG 0.369998 tig0016788:+13842 None:intergenic
TGATTATTGTTGTTGGAGAT+TGG 0.373331 tig0016788:-14041 Msa1359880:CDS
TAGACAAGGGAATGAGTAAA+TGG 0.384470 tig0016788:+12461 None:intergenic
GATTATTGTTGTTGGAGATT+GGG 0.385112 tig0016788:-14040 Msa1359880:intron
TTCACGTTAGCATTGGTAGA+TGG 0.388590 tig0016788:-14111 Msa1359880:CDS
TTTGGTGACAATCATGGGTT+TGG 0.390209 tig0016788:-14148 Msa1359880:CDS
TATAGTTATTGAACAATTGA+AGG 0.395906 tig0016788:-13321 Msa1359880:three_prime_UTR
AAAGCTCACAATATGTATTT+GGG 0.401334 tig0016788:-13547 Msa1359880:three_prime_UTR
ATAATAGAGCGAATACAGTT+TGG 0.411171 tig0016788:-13440 Msa1359880:three_prime_UTR
TAGCTATTTGGTGACAATCA+TGG 0.411496 tig0016788:-14154 Msa1359880:CDS
ACAATAATCAACAATATTCC+TGG 0.414279 tig0016788:+14054 None:intergenic
CTGAAAGAAATAAGCTTGTA+TGG 0.414661 tig0016788:-15508 Msa1359880:exon
GCATTGCCTGAGAACTCTCT+TGG 0.415222 tig0016788:+13188 None:intergenic
ACAAAGAGGGTAGCAGATAA+AGG 0.415465 tig0016788:+13683 None:intergenic
TTCTCTAGGCAATCAACTAA+TGG 0.418900 tig0016788:+13353 None:intergenic
AATATTCCTGGTTGACGAAT+GGG 0.419042 tig0016788:+14066 None:intergenic
GTAGACTGTAGCTGCACAAT+TGG 0.422673 tig0016788:+13105 None:intergenic
ACCTGCAGCAAAGCTTTATA+GGG 0.423414 tig0016788:+13770 None:intergenic
AGTTCTGGCTGAATTATCAT+TGG 0.427696 tig0016788:+12812 None:intergenic
ATGAAGATCAACCTATGTTA+AGG 0.428204 tig0016788:-15619 Msa1359880:five_prime_UTR
AAGATCCTTGCGAATTTAGC+AGG 0.439168 tig0016788:+13797 None:intergenic
TCATCCTTGAGGCCGAGGCC+TGG 0.439340 tig0016788:+13148 None:intergenic
TAAAGCTTTGCTGCAGGTAC+AGG 0.441403 tig0016788:-13765 Msa1359880:CDS
GCACTTGTGCCCACAGAGCC+AGG 0.442656 tig0016788:+15435 None:intergenic
TCAATATGTAATCTTCGAGT+TGG 0.449317 tig0016788:+13214 None:intergenic
AAGCAGATGAAAACAAGGTT+TGG 0.456691 tig0016788:+15391 None:intergenic
GGTAGCGCTAGAGCCGGTTC+AGG 0.463926 tig0016788:+12979 None:intergenic
TGTTAGCAATCCCCAGGCCT+CGG 0.465169 tig0016788:-13160 Msa1359880:three_prime_UTR
GTACAGGATATCTGCAGTTA+TGG 0.466206 tig0016788:-13749 Msa1359880:CDS
AGCTATTTGGTGACAATCAT+GGG 0.471135 tig0016788:-14153 Msa1359880:CDS
TAACATATTGAACATGAGTC+TGG 0.478993 tig0016788:+12625 None:intergenic
CATTTGACATAGCCATAGCT+TGG 0.481202 tig0016788:-13037 Msa1359880:three_prime_UTR
ATCCTTGAGGCCGAGGCCTG+GGG 0.488704 tig0016788:+13150 None:intergenic
GCCCTATAAAGCTTTGCTGC+AGG 0.489609 tig0016788:-13771 Msa1359880:CDS
ATATTGTTGATTATTGTTGT+TGG 0.494499 tig0016788:-14048 Msa1359880:CDS
AAGATGATGAATTAAGTTGA+GGG 0.497335 tig0016788:+12876 None:intergenic
ATCCCCAGGCCTCGGCCTCA+AGG 0.498174 tig0016788:-13152 Msa1359880:three_prime_UTR
GAAGATGATGAATTAAGTTG+AGG 0.499292 tig0016788:+12875 None:intergenic
GCAGCAGTTTGCTCCTGAAC+CGG 0.499441 tig0016788:-12992 Msa1359880:three_prime_UTR
AAATGTCATCCTTGAGGCCG+AGG 0.503374 tig0016788:+13143 None:intergenic
AAACAGAATTTCCTTAACAT+AGG 0.505920 tig0016788:+15608 None:intergenic
AGGAACTCTCTTATATTTAG+CGG 0.509237 tig0016788:-15777 None:intergenic
GATTGTTTGCAACTATCTCA+TGG 0.511960 tig0016788:+12844 None:intergenic
TCATGGGTTTGGTTATACCT+TGG 0.513400 tig0016788:-14137 Msa1359880:CDS
CAATATTCCTGGTTGACGAA+TGG 0.518569 tig0016788:+14065 None:intergenic
CTTCGAGTTGGACTGTAAGC+AGG 0.521612 tig0016788:+13226 None:intergenic
TGAGAACCATTGTGCAGTCT+TGG 0.527155 tig0016788:+12924 None:intergenic
TCTTATATTTAGCGGCGCTA+AGG 0.529664 tig0016788:-15769 Msa1359880:five_prime_UTR
GCCAGCTTCATCCTCAGATT+AGG 0.530843 tig0016788:-15414 Msa1359880:CDS
CAACTATCTCATGCTGGCAG+TGG 0.539635 tig0016788:+12764 None:intergenic
ATTAAATGAGAATCACAAAG+AGG 0.541148 tig0016788:+13669 None:intergenic
TGAAAACCAAGAGAGTTCTC+AGG 0.545120 tig0016788:-13194 Msa1359880:three_prime_UTR
TTGACATAGCCATAGCTTGG+AGG 0.545701 tig0016788:-13034 Msa1359880:three_prime_UTR
AAATGTCCCATTCGTCAACC+AGG 0.546817 tig0016788:-14072 Msa1359880:CDS
CCGTTGGAACCTCCAAGCTA+TGG 0.550015 tig0016788:+13025 None:intergenic
ACATAGGTTACTTTGTGTAT+CGG 0.550561 tig0016788:+15738 None:intergenic
CGTCTTAGATGAGACTATGC+AGG 0.552448 tig0016788:+13075 None:intergenic
GCCTAATCTGAGGATGAAGC+TGG 0.558630 tig0016788:+15413 None:intergenic
TACTGTGGTAGCGCTAGAGC+CGG 0.563549 tig0016788:+12973 None:intergenic
GGAAAGAAATGATGCAAACT+CGG 0.563848 tig0016788:+12502 None:intergenic
TTGGAGTTTCACGTTAGCAT+TGG 0.565060 tig0016788:-14118 Msa1359880:CDS
CCATAGCTTGGAGGTTCCAA+CGG 0.571201 tig0016788:-13025 Msa1359880:three_prime_UTR
CAAATTTGTTAGCAATCCCC+AGG 0.571380 tig0016788:-13166 Msa1359880:three_prime_UTR
TGCTGCTGTCATGATTCCGT+TGG 0.573229 tig0016788:+13009 None:intergenic
CTCCCAAAGACATAAAGAGA+AGG 0.573953 tig0016788:+15367 None:intergenic
TATCTCATGCTGGCAGTGGA+CGG 0.575835 tig0016788:+12768 None:intergenic
CAATGGTTCTCACTCGCTGT+AGG 0.577319 tig0016788:-12913 Msa1359880:three_prime_UTR
ATCTACAACACTAGCTGTTG+AGG 0.585209 tig0016788:+13822 None:intergenic
ATATTGAACATGAGTCTGGT+AGG 0.588387 tig0016788:+12629 None:intergenic
TTACAACATTGCTGAAAATG+CGG 0.588416 tig0016788:+12722 None:intergenic
TCCCAAAGACATAAAGAGAA+GGG 0.588441 tig0016788:+15368 None:intergenic
GGCAGCTGCTGCTAGTGTCA+GGG 0.590351 tig0016788:+13843 None:intergenic
ACAAGGTTTGGCCTAATCTG+AGG 0.590525 tig0016788:+15403 None:intergenic
TGATGAATTAAGTTGAGGGA+AGG 0.603091 tig0016788:+12880 None:intergenic
TTGATGCATTTGTTAGACAA+GGG 0.603486 tig0016788:+12448 None:intergenic
TCACTGCAACTATCTCATGC+TGG 0.603777 tig0016788:+12758 None:intergenic
AATGAAATACCTGGCTCTGT+GGG 0.604276 tig0016788:-15444 Msa1359880:CDS
AAATTTCTGCACATTGAGTG+AGG 0.607970 tig0016788:-13298 Msa1359880:three_prime_UTR
AATGCTAACGTGAAACTCCA+AGG 0.609152 tig0016788:+14120 None:intergenic
GATCTCCTGCTAAATTCGCA+AGG 0.614662 tig0016788:-13802 Msa1359880:CDS
TTAAATGAGAATCACAAAGA+GGG 0.615300 tig0016788:+13670 None:intergenic
GAATGAAATACCTGGCTCTG+TGG 0.618928 tig0016788:-15445 Msa1359880:CDS
AAGGGAAGCAGATGAAAACA+AGG 0.621514 tig0016788:+15386 None:intergenic
AGTTACATGAATGAAATACC+TGG 0.624827 tig0016788:-15453 Msa1359880:CDS
TAGGTTACTTTGTGTATCGG+TGG 0.628344 tig0016788:+15741 None:intergenic
GTTATTCGAAATAGAGTCCG+AGG 0.628523 tig0016788:-12606 Msa1359880:three_prime_UTR
TGATAATGGGAATGACACAT+AGG 0.631576 tig0016788:+15722 None:intergenic
CGAGTTGGACTGTAAGCAGG+TGG 0.635678 tig0016788:+13229 None:intergenic
AAATATTACAAAATATACAA+TGG 0.635722 tig0016788:+13621 None:intergenic
ACAATTGGACTGTTGTCAAG+CGG 0.667940 tig0016788:+13120 None:intergenic
AAGCGGAAATGTCATCCTTG+AGG 0.675341 tig0016788:+13137 None:intergenic
TGGCTATGTCAAATGCAACA+CGG 0.695768 tig0016788:+13045 None:intergenic
AGTACACACTACAAAGTACA+CGG 0.704863 tig0016788:+13490 None:intergenic
TTCTGTGCAGACAACTACTG+TGG 0.708886 tig0016788:+12958 None:intergenic
TTGCAGCCAAGACTGCACAA+TGG 0.723373 tig0016788:-12930 Msa1359880:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTACAAAATATACAA+TGG + tig0016788:14615-14634 None:intergenic 10.0%
!! CTTTAATTATGTATGATAAT+GGG + tig0016788:12527-12546 None:intergenic 15.0%
!! TCTTTAATTATGTATGATAA+TGG + tig0016788:12528-12547 None:intergenic 15.0%
!! GAAATGCTATTAAATATTAT+AGG - tig0016788:12670-12689 Msa1359880:three_prime_UTR 15.0%
!!! ATTTTTTCTCAAATTATTAC+CGG - tig0016788:13038-13057 Msa1359880:three_prime_UTR 15.0%
!!! ATTCTTGCAAATTTTTTGTT+AGG + tig0016788:12585-12604 None:intergenic 20.0%
!! TTCATGTAACTTATTCTATA+AGG + tig0016788:12771-12790 None:intergenic 20.0%
!! ACATTAAATGAGAAATATCA+GGG + tig0016788:13275-13294 None:intergenic 20.0%
!! AACATTAAATGAGAAATATC+AGG + tig0016788:13276-13295 None:intergenic 20.0%
!! AGTGTTATATTATATCCAAA+AGG + tig0016788:13372-13391 None:intergenic 20.0%
!! TTTACATCACATAACATAAA+AGG - tig0016788:13963-13982 Msa1359880:intron 20.0%
!!! ATATTGTTGATTATTGTTGT+TGG - tig0016788:14185-14204 Msa1359880:intron 20.0%
!! TTAATATGATGAAGTTACAA+TGG - tig0016788:14270-14289 Msa1359880:intron 20.0%
!! TATAGTTATTGAACAATTGA+AGG - tig0016788:14912-14931 Msa1359880:intron 20.0%
! AAACAGAATTTCCTTAACAT+AGG + tig0016788:12628-12647 None:intergenic 25.0%
! TAACAAAGAGAAGAACAAAA+AGG + tig0016788:12923-12942 None:intergenic 25.0%
! TGGATATAATATAACACTGA+TGG - tig0016788:13374-13393 Msa1359880:three_prime_UTR 25.0%
! TTCAAAATCAAGATACGATA+CGG + tig0016788:13597-13616 None:intergenic 25.0%
!!! ATTTTTCCGTATTGACATAT+CGG - tig0016788:13617-13636 Msa1359880:three_prime_UTR 25.0%
! AATGAGATTCAAGCATAAAA+AGG + tig0016788:13807-13826 None:intergenic 25.0%
! ATCACATAACATAAAAGGAA+AGG - tig0016788:13968-13987 Msa1359880:intron 25.0%
! ACAATAATCAACAATATTCC+TGG + tig0016788:14182-14201 None:intergenic 25.0%
! TTAGTACATGTTTGAATTGA+CGG - tig0016788:14247-14266 Msa1359880:intron 25.0%
! AACTAGAGTTATCAACATAT+CGG + tig0016788:14348-14367 None:intergenic 25.0%
! TTAAATGAGAATCACAAAGA+GGG + tig0016788:14566-14585 None:intergenic 25.0%
! ATTAAATGAGAATCACAAAG+AGG + tig0016788:14567-14586 None:intergenic 25.0%
! AAAAGCTCACAATATGTATT+TGG - tig0016788:14685-14704 Msa1359880:intron 25.0%
! AAAGCTCACAATATGTATTT+GGG - tig0016788:14686-14705 Msa1359880:intron 25.0%
! ATACTTTCAAAAATACTGTG+AGG - tig0016788:14817-14836 Msa1359880:intron 25.0%
! AGATATAACTGTCAAGAATA+TGG + tig0016788:14964-14983 None:intergenic 25.0%
!!! GACAGTTATATCTATTTTTG+TGG - tig0016788:14971-14990 Msa1359880:intron 25.0%
!!! ATCTATTTTTGTGGATATCT+TGG - tig0016788:14980-14999 Msa1359880:intron 25.0%
!!! AAGATGATGAATTAAGTTGA+GGG + tig0016788:15360-15379 None:intergenic 25.0%
!!! TATACATCTGTTTTTATCCT+CGG + tig0016788:15647-15666 None:intergenic 25.0%
! ACATAGGTTACTTTGTGTAT+CGG + tig0016788:12498-12517 None:intergenic 30.0%
!!! TTTTTTGTTAGGTAGAAGCT+TGG + tig0016788:12574-12593 None:intergenic 30.0%
ATGAAGATCAACCTATGTTA+AGG - tig0016788:12614-12633 Msa1359880:three_prime_UTR 30.0%
GGAAATTCTGTTTGAATCAT+AGG - tig0016788:12635-12654 Msa1359880:three_prime_UTR 30.0%
CTGAAAGAAATAAGCTTGTA+TGG - tig0016788:12725-12744 Msa1359880:three_prime_UTR 30.0%
AGTTACATGAATGAAATACC+TGG - tig0016788:12780-12799 Msa1359880:three_prime_UTR 30.0%
TATCGGTGCATGATAATTAT+CGG + tig0016788:13248-13267 None:intergenic 30.0%
ATAACTTAACTCTTGAGTAC+TGG - tig0016788:13303-13322 Msa1359880:three_prime_UTR 30.0%
AAACAAAAGAAACCAGTCAT+AGG + tig0016788:13492-13511 None:intergenic 30.0%
!!! TATGACTGGTTTCTTTTGTT+TGG - tig0016788:13491-13510 Msa1359880:three_prime_UTR 30.0%
GTCAAGTCAATTATGAAACA+TGG + tig0016788:13698-13717 None:intergenic 30.0%
!!! GACTTGACATTTTGTTGTTT+TGG - tig0016788:13710-13729 Msa1359880:CDS 30.0%
AAAAAGCTTAAAAGCTTTGC+AGG + tig0016788:13777-13796 None:intergenic 30.0%
ACATAACATAAAAGGAAAGG+AGG - tig0016788:13971-13990 Msa1359880:intron 30.0%
TTATTCATGTCCTAGCTATT+TGG - tig0016788:14067-14086 Msa1359880:CDS 30.0%
! TGATTATTGTTGTTGGAGAT+TGG - tig0016788:14192-14211 Msa1359880:intron 30.0%
! GATTATTGTTGTTGGAGATT+GGG - tig0016788:14193-14212 Msa1359880:intron 30.0%
TTCTTATCCAAATGCATGTA+TGG + tig0016788:14317-14336 None:intergenic 30.0%
! AACTCTAGTTTATTTGCTAC+AGG - tig0016788:14358-14377 Msa1359880:intron 30.0%
CAGATAAAGGTTAAAAAGAG+AGG + tig0016788:14540-14559 None:intergenic 30.0%
!!! TCGATCTAATGTTTTTTACG+GGG + tig0016788:14592-14611 None:intergenic 30.0%
!!! GTCGATCTAATGTTTTTTAC+GGG + tig0016788:14593-14612 None:intergenic 30.0%
!!! GGTCGATCTAATGTTTTTTA+CGG + tig0016788:14594-14613 None:intergenic 30.0%
ATAATAGAGCGAATACAGTT+TGG - tig0016788:14793-14812 Msa1359880:intron 30.0%
!!! CTATAGAGTTGTTTTTCTCT+AGG + tig0016788:14897-14916 None:intergenic 30.0%
TCAATATGTAATCTTCGAGT+TGG + tig0016788:15022-15041 None:intergenic 30.0%
! GAAGATGATGAATTAAGTTG+AGG + tig0016788:15361-15380 None:intergenic 30.0%
TTACAACATTGCTGAAAATG+CGG + tig0016788:15514-15533 None:intergenic 30.0%
! CTTTTATCATATTCTGGTCT+TGG + tig0016788:15584-15603 None:intergenic 30.0%
TAACATATTGAACATGAGTC+TGG + tig0016788:15611-15630 None:intergenic 30.0%
!! TTTTGTTTGCTAGCATCTTA+TGG + tig0016788:15687-15706 None:intergenic 30.0%
!! TGATAATGGGAATGACACAT+AGG + tig0016788:12514-12533 None:intergenic 35.0%
AAGCAGATGAAAACAAGGTT+TGG + tig0016788:12845-12864 None:intergenic 35.0%
TTCCCTTCTCTTTATGTCTT+TGG - tig0016788:12863-12882 Msa1359880:three_prime_UTR 35.0%
TCCCTTCTCTTTATGTCTTT+GGG - tig0016788:12864-12883 Msa1359880:three_prime_UTR 35.0%
TCCCAAAGACATAAAGAGAA+GGG + tig0016788:12868-12887 None:intergenic 35.0%
ACTCAGACTGAAATTGTGTT+TGG - tig0016788:12975-12994 Msa1359880:three_prime_UTR 35.0%
!!! TCATCCATTTTGAAGTATCG+GGG + tig0016788:13104-13123 None:intergenic 35.0%
!!! GTCATCCATTTTGAAGTATC+GGG + tig0016788:13105-13124 None:intergenic 35.0%
!!! CGTCATCCATTTTGAAGTAT+CGG + tig0016788:13106-13125 None:intergenic 35.0%
!!! AGTACTGGTGTGTTCTTTTT+TGG - tig0016788:13318-13337 Msa1359880:three_prime_UTR 35.0%
! AGCACTAACAATGTTCCTTT+TGG - tig0016788:13354-13373 Msa1359880:three_prime_UTR 35.0%
CAATTATGAAACATGGACAC+TGG + tig0016788:13691-13710 None:intergenic 35.0%
ATGATTGTCACCAAATAGCT+AGG + tig0016788:14080-14099 None:intergenic 35.0%
! TAGCTATTTGGTGACAATCA+TGG - tig0016788:14079-14098 Msa1359880:CDS 35.0%
! AGCTATTTGGTGACAATCAT+GGG - tig0016788:14080-14099 Msa1359880:CDS 35.0%
AATATTCCTGGTTGACGAAT+GGG + tig0016788:14170-14189 None:intergenic 35.0%
!!! CGATCTAATGTTTTTTACGG+GGG + tig0016788:14591-14610 None:intergenic 35.0%
AGTACACACTACAAAGTACA+CGG + tig0016788:14746-14765 None:intergenic 35.0%
! AAAAATACTGTGAGGAGTGT+AGG - tig0016788:14825-14844 Msa1359880:intron 35.0%
TTCTCTAGGCAATCAACTAA+TGG + tig0016788:14883-14902 None:intergenic 35.0%
AAATTTCTGCACATTGAGTG+AGG - tig0016788:14935-14954 Msa1359880:intron 35.0%
!! TGATGAATTAAGTTGAGGGA+AGG + tig0016788:15356-15375 None:intergenic 35.0%
CAACTATCTCATGGAACATT+TGG + tig0016788:15383-15402 None:intergenic 35.0%
GATTGTTTGCAACTATCTCA+TGG + tig0016788:15392-15411 None:intergenic 35.0%
! AGTTCTGGCTGAATTATCAT+TGG + tig0016788:15424-15443 None:intergenic 35.0%
! AGAATTTTTATGCGGAGTTC+TGG + tig0016788:15439-15458 None:intergenic 35.0%
GAACTCCGCATAAAAATTCT+TGG - tig0016788:15439-15458 Msa1359880:CDS 35.0%
! GGCTTCCAAGAATTTTTATG+CGG + tig0016788:15447-15466 None:intergenic 35.0%
! GGTAGGCTTTTATCATATTC+TGG + tig0016788:15590-15609 None:intergenic 35.0%
ATATTGAACATGAGTCTGGT+AGG + tig0016788:15607-15626 None:intergenic 35.0%
GGAAAGAAATGATGCAAACT+CGG + tig0016788:15734-15753 None:intergenic 35.0%
TCTTATATTTAGCGGCGCTA+AGG - tig0016788:12464-12483 Msa1359880:three_prime_UTR 40.0%
! TAGGTTACTTTGTGTATCGG+TGG + tig0016788:12495-12514 None:intergenic 40.0%
! CTTTCAGCTGAAGCTTCTTT+TGG + tig0016788:12712-12731 None:intergenic 40.0%
!! AATGAAATACCTGGCTCTGT+GGG - tig0016788:12789-12808 Msa1359880:three_prime_UTR 40.0%
AAGGGAAGCAGATGAAAACA+AGG + tig0016788:12850-12869 None:intergenic 40.0%
CTCCCAAAGACATAAAGAGA+AGG + tig0016788:12869-12888 None:intergenic 40.0%
!! CAAATTATTACCGGTGTCGT+CGG - tig0016788:13047-13066 Msa1359880:three_prime_UTR 40.0%
ATACTCTCCTGTTACGTATC+GGG + tig0016788:13158-13177 None:intergenic 40.0%
GATACTCTCCTGTTACGTAT+CGG + tig0016788:13159-13178 None:intergenic 40.0%
ATACTCTCCTGATACGTATC+GGG + tig0016788:13225-13244 None:intergenic 40.0%
GATACTCTCCTGATACGTAT+CGG + tig0016788:13226-13245 None:intergenic 40.0%
AGAAATATCAGGGCACGTAT+CGG + tig0016788:13265-13284 None:intergenic 40.0%
!! AACACTGATGGTGCTCTTTT+TGG - tig0016788:13386-13405 Msa1359880:three_prime_UTR 40.0%
!! ACACTGATGGTGCTCTTTTT+GGG - tig0016788:13387-13406 Msa1359880:three_prime_UTR 40.0%
AATCAAGATACGATACGGCT+GGG + tig0016788:13592-13611 None:intergenic 40.0%
AAATCAAGATACGATACGGC+TGG + tig0016788:13593-13612 None:intergenic 40.0%
! ACTGCACCGATATGTCAATA+CGG + tig0016788:13626-13645 None:intergenic 40.0%
AAAAGCTTTGCAGGATCTCA+GGG + tig0016788:13768-13787 None:intergenic 40.0%
TAAAAGCTTTGCAGGATCTC+AGG + tig0016788:13769-13788 None:intergenic 40.0%
! TTTGGTGACAATCATGGGTT+TGG - tig0016788:14085-14104 Msa1359880:CDS 40.0%
! TCATGGGTTTGGTTATACCT+TGG - tig0016788:14096-14115 Msa1359880:CDS 40.0%
AATGCTAACGTGAAACTCCA+AGG + tig0016788:14116-14135 None:intergenic 40.0%
TTGGAGTTTCACGTTAGCAT+TGG - tig0016788:14115-14134 Msa1359880:CDS 40.0%
!! TTCACGTTAGCATTGGTAGA+TGG - tig0016788:14122-14141 Msa1359880:CDS 40.0%
CAATATTCCTGGTTGACGAA+TGG + tig0016788:14171-14190 None:intergenic 40.0%
ATCTACAACACTAGCTGTTG+AGG + tig0016788:14414-14433 None:intergenic 40.0%
AAGATCCTTGCGAATTTAGC+AGG + tig0016788:14439-14458 None:intergenic 40.0%
! ACCTGCAGCAAAGCTTTATA+GGG + tig0016788:14466-14485 None:intergenic 40.0%
! TACCTGCAGCAAAGCTTTAT+AGG + tig0016788:14467-14486 None:intergenic 40.0%
GTACAGGATATCTGCAGTTA+TGG - tig0016788:14484-14503 Msa1359880:intron 40.0%
! CAGTTATGGCTTTTGTGTCA+TGG - tig0016788:14498-14517 Msa1359880:intron 40.0%
GTTAAAAAGAGAGGATGCCA+AGG + tig0016788:14531-14550 None:intergenic 40.0%
ACAAAGAGGGTAGCAGATAA+AGG + tig0016788:14553-14572 None:intergenic 40.0%
TGAAAACCAAGAGAGTTCTC+AGG - tig0016788:15039-15058 Msa1359880:intron 40.0%
!! CAAATTTGTTAGCAATCCCC+AGG - tig0016788:15067-15086 Msa1359880:intron 40.0%
ACAATTGGACTGTTGTCAAG+CGG + tig0016788:15116-15135 None:intergenic 40.0%
TGGCTATGTCAAATGCAACA+CGG + tig0016788:15191-15210 None:intergenic 40.0%
CATTTGACATAGCCATAGCT+TGG - tig0016788:15196-15215 Msa1359880:intron 40.0%
GTTATTCGAAATAGAGTCCG+AGG - tig0016788:15627-15646 Msa1359880:five_prime_UTR 40.0%
!! GAATGAAATACCTGGCTCTG+TGG - tig0016788:12788-12807 Msa1359880:three_prime_UTR 45.0%
ACAAGGTTTGGCCTAATCTG+AGG + tig0016788:12833-12852 None:intergenic 45.0%
TCTACAGCTACACAGCTTTC+TGG - tig0016788:12895-12914 Msa1359880:three_prime_UTR 45.0%
GAAGCCCCGATACTTCAAAA+TGG - tig0016788:13097-13116 Msa1359880:three_prime_UTR 45.0%
!! GTTACGTATCGGGAAGTATC+AGG + tig0016788:13148-13167 None:intergenic 45.0%
GATACTTCCCGATACGTAAC+AGG - tig0016788:13148-13167 Msa1359880:three_prime_UTR 45.0%
! TGATACGTATCGGGAAGTGT+CGG + tig0016788:13216-13235 None:intergenic 45.0%
TCCGTATCGTATCTCGTATC+CGG - tig0016788:13652-13671 Msa1359880:three_prime_UTR 45.0%
AAATGTCCCATTCGTCAACC+AGG - tig0016788:14161-14180 Msa1359880:intron 45.0%
CGTCAGTCCATACATGCATT+TGG - tig0016788:14307-14326 Msa1359880:intron 45.0%
GATCTCCTGCTAAATTCGCA+AGG - tig0016788:14431-14450 Msa1359880:intron 45.0%
TAAAGCTTTGCTGCAGGTAC+AGG - tig0016788:14468-14487 Msa1359880:intron 45.0%
TGTGTCATGGTTTCTGTCCT+TGG - tig0016788:14511-14530 Msa1359880:intron 45.0%
AAGCGGAAATGTCATCCTTG+AGG + tig0016788:15099-15118 None:intergenic 45.0%
GTAGACTGTAGCTGCACAAT+TGG + tig0016788:15131-15150 None:intergenic 45.0%
CGTCTTAGATGAGACTATGC+AGG + tig0016788:15161-15180 None:intergenic 45.0%
TTGACATAGCCATAGCTTGG+AGG - tig0016788:15199-15218 Msa1359880:intron 45.0%
TTCTGTGCAGACAACTACTG+TGG + tig0016788:15278-15297 None:intergenic 45.0%
TGAGAACCATTGTGCAGTCT+TGG + tig0016788:15312-15331 None:intergenic 45.0%
TCACTGCAACTATCTCATGC+TGG + tig0016788:15478-15497 None:intergenic 45.0%
!! TAAAAAATAAATTTAATCTT+CGG + tig0016788:13181-13200 None:intergenic 5.0%
!!! ATATTTGTTATTTAAAAAAA+TGG - tig0016788:13518-13537 Msa1359880:three_prime_UTR 5.0%
!!! AAAAGAAATATTTAAATTTT+AGG - tig0016788:13845-13864 Msa1359880:CDS 5.0%
GCCAGCTTCATCCTCAGATT+AGG - tig0016788:12819-12838 Msa1359880:three_prime_UTR 50.0%
GCCTAATCTGAGGATGAAGC+TGG + tig0016788:12823-12842 None:intergenic 50.0%
!! GGGAAGTATCAGGCAGGTAT+CGG + tig0016788:13138-13157 None:intergenic 50.0%
GACACTTCCCGATACGTATC+AGG - tig0016788:13215-13234 Msa1359880:three_prime_UTR 50.0%
ATGTGCTACGAGCCTATGAC+TGG - tig0016788:13477-13496 Msa1359880:three_prime_UTR 50.0%
CCCGGATACGAGATACGATA+CGG + tig0016788:13656-13675 None:intergenic 50.0%
CCGTATCGTATCTCGTATCC+GGG - tig0016788:13653-13672 Msa1359880:three_prime_UTR 50.0%
GCCCTATAAAGCTTTGCTGC+AGG - tig0016788:14462-14481 Msa1359880:intron 50.0%
!! CTTCGAGTTGGACTGTAAGC+AGG + tig0016788:15010-15029 None:intergenic 50.0%
GCATTGCCTGAGAACTCTCT+TGG + tig0016788:15048-15067 None:intergenic 50.0%
AAATGTCATCCTTGAGGCCG+AGG + tig0016788:15093-15112 None:intergenic 50.0%
CCATAGCTTGGAGGTTCCAA+CGG - tig0016788:15208-15227 Msa1359880:intron 50.0%
TGCTGCTGTCATGATTCCGT+TGG + tig0016788:15227-15246 None:intergenic 50.0%
TTGCAGCCAAGACTGCACAA+TGG - tig0016788:15303-15322 Msa1359880:intron 50.0%
CAATGGTTCTCACTCGCTGT+AGG - tig0016788:15320-15339 Msa1359880:intron 50.0%
TATCTCATGCTGGCAGTGGA+CGG + tig0016788:15468-15487 None:intergenic 50.0%
CAACTATCTCATGCTGGCAG+TGG + tig0016788:15472-15491 None:intergenic 50.0%
! TGGCAGCAGCTTTGACTTTG+AGG + tig0016788:15755-15774 None:intergenic 50.0%
!! CGTATCGGGAAGTATCAGGC+AGG + tig0016788:13144-13163 None:intergenic 55.0%
!! CACTGGACATCTCTGAAGCC+CGG + tig0016788:13674-13693 None:intergenic 55.0%
! CGAGTTGGACTGTAAGCAGG+TGG + tig0016788:15007-15026 None:intergenic 55.0%
TGTTAGCAATCCCCAGGCCT+CGG - tig0016788:15073-15092 Msa1359880:intron 55.0%
CCGTTGGAACCTCCAAGCTA+TGG + tig0016788:15211-15230 None:intergenic 55.0%
! GCAGCAGTTTGCTCCTGAAC+CGG - tig0016788:15241-15260 Msa1359880:intron 55.0%
! TACTGTGGTAGCGCTAGAGC+CGG + tig0016788:15263-15282 None:intergenic 55.0%
GTCATCAACGCCGACGACAC+CGG + tig0016788:13060-13079 None:intergenic 60.0%
GGCAGCTGCTGCTAGTGTCA+GGG + tig0016788:14393-14412 None:intergenic 60.0%
AGGCAGCTGCTGCTAGTGTC+AGG + tig0016788:14394-14413 None:intergenic 60.0%
GCACTTGTGCCCACAGAGCC+AGG + tig0016788:12801-12820 None:intergenic 65.0%
ATCCTTGAGGCCGAGGCCTG+GGG + tig0016788:15086-15105 None:intergenic 65.0%
CATCCTTGAGGCCGAGGCCT+GGG + tig0016788:15087-15106 None:intergenic 65.0%
TCATCCTTGAGGCCGAGGCC+TGG + tig0016788:15088-15107 None:intergenic 65.0%
! GGTAGCGCTAGAGCCGGTTC+AGG + tig0016788:15257-15276 None:intergenic 65.0%
ATCCCCAGGCCTCGGCCTCA+AGG - tig0016788:15081-15100 Msa1359880:intron 70.0%
Chromosome Type Strat End Strand Name
tig0016788 gene 12463 15792 12463 ID=Msa1359880;Name=Msa1359880
tig0016788 mRNA 12463 15792 12463 ID=Msa1359880-mRNA-1;Parent=Msa1359880;Name=Msa1359880-mRNA-1;_AED=0.33;_eAED=0.33;_QI=281|1|1|1|0.5|0.33|3|1218|166
tig0016788 exon 12463 13875 12463 ID=Msa1359880-mRNA-1:exon:11602;Parent=Msa1359880-mRNA-1
tig0016788 exon 14041 14173 14041 ID=Msa1359880-mRNA-1:exon:11601;Parent=Msa1359880-mRNA-1
tig0016788 exon 15339 15792 15339 ID=Msa1359880-mRNA-1:exon:11600;Parent=Msa1359880-mRNA-1
tig0016788 five_prime_UTR 15512 15792 15512 ID=Msa1359880-mRNA-1:five_prime_utr;Parent=Msa1359880-mRNA-1
tig0016788 CDS 15339 15511 15339 ID=Msa1359880-mRNA-1:cds;Parent=Msa1359880-mRNA-1
tig0016788 CDS 14041 14173 14041 ID=Msa1359880-mRNA-1:cds;Parent=Msa1359880-mRNA-1
tig0016788 CDS 13681 13875 13681 ID=Msa1359880-mRNA-1:cds;Parent=Msa1359880-mRNA-1
tig0016788 three_prime_UTR 12463 13680 12463 ID=Msa1359880-mRNA-1:three_prime_utr;Parent=Msa1359880-mRNA-1
Gene Sequence

>Msa1359880

ATGGTTAAGTTATATAGTTCAGAACCTTATAGAATAAGTTACATGAATGAAATACCTGGCTCTGTGGGCACAAGTGCCAGCTTCATCCTCAGATTAGGCCAAACCTTGTTTTCATCTGCTTCCCTTCTCTTTATGTCTTTGGGAGTTGAATTCTACAGCTACACAGCTTTCTGCTATTTGGTGACAATCATGGGTTTGGTTATACCTTGGAGTTTCACGTTAGCATTGGTAGATGGATACTCTGTACTAGTCAAATGTCCCATTCGTCAACCAGGAATATTGTTGATTATTGTTGTTGGAGATTGGGTATTATCAACCCTGACACTAGCAGCAGCTGCCTCAACAGCTAGTGTTGTAGATCTCCTGCTAAATTCGCAAGGATCTTTTTGCCCTATAAAGCTTTGCTGCAGGTACAGGATATCTGCAGTTATGGCTTTTGTGTCATGGTTTCTGTCCTTGGCATCCTCTCTTTTTAACCTTTATCTGCTACCCTCTTTGTGA

Protein sequence

>Msa1359880

MVKLYSSEPYRISYMNEIPGSVGTSASFILRLGQTLFSSASLLFMSLGVEFYSYTAFCYLVTIMGLVIPWSFTLALVDGYSVLVKCPIRQPGILLIIVVGDWVLSTLTLAAAASTASVVDLLLNSQGSFCPIKLCCRYRISAVMAFVSWFLSLASSLFNLYLLPSL*