Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573760 | XP_039684326.1 | 97.982 | 446 | 6 | 1 | 1 | 446 | 1 | 443 | 0.0 | 906 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573760 | sp|Q9LK76|IQD26_ARATH | 49.279 | 416 | 141 | 11 | 1 | 409 | 1 | 353 | 7.26e-94 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573760 | A0A396GR40 | 97.982 | 446 | 6 | 1 | 1 | 446 | 1 | 443 | 0.0 | 906 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032180 | Msa0573760 | 0.809620 | 1.729043e-50 | -8.615850e-47 |
| Msa0481140 | Msa0573760 | 0.803716 | 3.052123e-49 | -8.615850e-47 |
| Msa0537990 | Msa0573760 | 0.806081 | 9.780127e-50 | -8.615850e-47 |
| Msa0573760 | Msa0585340 | 0.804901 | 1.729443e-49 | -8.615850e-47 |
| Msa0573760 | Msa0707600 | 0.917482 | 5.032678e-86 | -8.615850e-47 |
| Msa0573760 | Msa0909760 | 0.802083 | 6.637795e-49 | -8.615850e-47 |
| Msa0573760 | Msa0966710 | 0.813103 | 3.032204e-51 | -8.615850e-47 |
| Msa0573760 | Msa1000970 | 0.815244 | 1.021062e-51 | -8.615850e-47 |
| Msa0573760 | Msa1116660 | 0.801476 | 8.844585e-49 | -8.615850e-47 |
| Msa0573760 | Msa1217910 | 0.812626 | 3.856634e-51 | -8.615850e-47 |
| Msa0573760 | Msa1352240 | 0.916136 | 2.559716e-85 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573760 | MtrunA17_Chr8g0389781 | 97.982 | 446 | 6 | 1 | 1 | 446 | 1 | 443 | 0.0 | 906 |
| Msa0573760 | MtrunA17_Chr8g0340761 | 52.860 | 437 | 152 | 16 | 1 | 417 | 1 | 403 | 7.14e-113 | 338 |
| Msa0573760 | MtrunA17_Chr2g0330921 | 37.381 | 420 | 187 | 15 | 1 | 410 | 1 | 354 | 4.27e-66 | 215 |
| Msa0573760 | MtrunA17_Chr1g0204901 | 39.348 | 460 | 212 | 19 | 1 | 433 | 1 | 420 | 1.89e-38 | 144 |
| Msa0573760 | MtrunA17_Chr1g0166431 | 31.957 | 460 | 225 | 15 | 1 | 433 | 7 | 405 | 6.72e-35 | 134 |
| Msa0573760 | MtrunA17_Chr4g0057321 | 31.180 | 449 | 232 | 15 | 1 | 420 | 1 | 401 | 3.71e-32 | 127 |
| Msa0573760 | MtrunA17_Chr1g0203711 | 36.164 | 365 | 172 | 12 | 63 | 385 | 47 | 392 | 2.06e-27 | 113 |
| Msa0573760 | MtrunA17_Chr8g0346021 | 63.415 | 82 | 19 | 2 | 106 | 184 | 112 | 185 | 5.31e-21 | 95.5 |
| Msa0573760 | MtrunA17_Chr7g0273951 | 32.384 | 281 | 121 | 11 | 126 | 391 | 106 | 332 | 1.37e-19 | 90.1 |
| Msa0573760 | MtrunA17_Chr4g0020671 | 37.879 | 132 | 60 | 3 | 56 | 184 | 47 | 159 | 1.35e-18 | 87.8 |
| Msa0573760 | MtrunA17_Chr6g0472551 | 67.797 | 59 | 19 | 0 | 128 | 186 | 119 | 177 | 4.89e-18 | 86.3 |
| Msa0573760 | MtrunA17_Chr1g0200161 | 37.500 | 232 | 118 | 8 | 1 | 214 | 1 | 223 | 6.37e-18 | 85.9 |
| Msa0573760 | MtrunA17_Chr3g0126901 | 61.429 | 70 | 22 | 1 | 108 | 177 | 99 | 163 | 1.27e-17 | 84.7 |
| Msa0573760 | MtrunA17_Chr4g0025441 | 71.698 | 53 | 15 | 0 | 125 | 177 | 95 | 147 | 6.51e-17 | 82.8 |
| Msa0573760 | MtrunA17_Chr8g0371131 | 56.716 | 67 | 29 | 0 | 125 | 191 | 70 | 136 | 6.69e-17 | 77.4 |
| Msa0573760 | MtrunA17_Chr7g0273861 | 60.656 | 61 | 24 | 0 | 128 | 188 | 127 | 187 | 8.25e-17 | 82.4 |
| Msa0573760 | MtrunA17_Chr4g0060381 | 60.000 | 60 | 24 | 0 | 128 | 187 | 102 | 161 | 1.87e-16 | 81.6 |
| Msa0573760 | MtrunA17_Chr3g0135851 | 66.038 | 53 | 18 | 0 | 125 | 177 | 90 | 142 | 3.89e-15 | 77.0 |
| Msa0573760 | MtrunA17_Chr1g0146931 | 58.824 | 68 | 23 | 1 | 110 | 177 | 111 | 173 | 7.97e-15 | 76.3 |
| Msa0573760 | MtrunA17_Chr1g0172611 | 41.844 | 141 | 80 | 1 | 75 | 213 | 52 | 192 | 1.02e-14 | 75.5 |
| Msa0573760 | MtrunA17_Chr1g0181581 | 45.455 | 88 | 40 | 1 | 105 | 192 | 103 | 182 | 1.03e-14 | 75.9 |
| Msa0573760 | MtrunA17_Chr6g0462191 | 47.436 | 156 | 76 | 3 | 74 | 229 | 57 | 206 | 2.42e-14 | 74.7 |
| Msa0573760 | MtrunA17_Chr4g0045641 | 41.667 | 84 | 43 | 1 | 124 | 207 | 144 | 221 | 7.72e-14 | 73.6 |
| Msa0573760 | MtrunA17_Chr7g0263731 | 40.000 | 135 | 72 | 3 | 73 | 207 | 58 | 183 | 3.88e-13 | 71.2 |
| Msa0573760 | MtrunA17_Chr1g0156121 | 47.222 | 72 | 38 | 0 | 128 | 199 | 126 | 197 | 3.88e-12 | 68.6 |
| Msa0573760 | MtrunA17_Chr5g0416161 | 34.409 | 93 | 47 | 1 | 98 | 190 | 105 | 183 | 8.69e-11 | 64.3 |
| Msa0573760 | MtrunA17_Chr2g0283321 | 44.776 | 67 | 37 | 0 | 122 | 188 | 59 | 125 | 9.56e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0573760 | AT3G16490.1 | 49.279 | 416 | 141 | 11 | 1 | 409 | 1 | 353 | 7.38e-95 | 291 |
| Msa0573760 | AT4G29150.1 | 45.578 | 441 | 150 | 18 | 1 | 420 | 17 | 388 | 4.18e-72 | 233 |
| Msa0573760 | AT1G51960.1 | 37.799 | 418 | 169 | 16 | 1 | 409 | 1 | 336 | 3.51e-49 | 171 |
| Msa0573760 | AT4G14750.2 | 38.255 | 298 | 103 | 10 | 125 | 416 | 163 | 385 | 9.28e-34 | 132 |
| Msa0573760 | AT4G14750.3 | 38.255 | 298 | 103 | 10 | 125 | 416 | 163 | 385 | 9.60e-34 | 132 |
| Msa0573760 | AT4G14750.1 | 37.919 | 298 | 104 | 11 | 125 | 416 | 104 | 326 | 1.46e-33 | 130 |
| Msa0573760 | AT4G23060.1 | 34.490 | 461 | 191 | 19 | 1 | 385 | 1 | 426 | 6.70e-31 | 124 |
| Msa0573760 | AT5G62070.1 | 34.826 | 402 | 177 | 13 | 7 | 385 | 3 | 342 | 1.71e-24 | 105 |
| Msa0573760 | AT5G07240.1 | 33.091 | 275 | 124 | 9 | 128 | 388 | 108 | 336 | 4.58e-21 | 95.1 |
| Msa0573760 | AT5G07240.2 | 33.091 | 275 | 124 | 9 | 128 | 388 | 154 | 382 | 1.05e-20 | 94.7 |
| Msa0573760 | AT4G10640.1 | 31.889 | 323 | 171 | 13 | 100 | 396 | 79 | 378 | 1.39e-20 | 94.0 |
| Msa0573760 | AT3G52290.1 | 57.759 | 116 | 47 | 1 | 75 | 190 | 59 | 172 | 1.81e-20 | 93.6 |
| Msa0573760 | AT1G01110.2 | 68.182 | 66 | 21 | 0 | 125 | 190 | 120 | 185 | 2.78e-20 | 94.0 |
| Msa0573760 | AT4G00820.1 | 68.182 | 66 | 21 | 0 | 125 | 190 | 131 | 196 | 9.53e-20 | 92.0 |
| Msa0573760 | AT5G03040.1 | 30.522 | 249 | 149 | 7 | 1 | 244 | 1 | 230 | 5.57e-19 | 89.4 |
| Msa0573760 | AT5G03040.3 | 30.522 | 249 | 149 | 7 | 1 | 244 | 1 | 230 | 5.57e-19 | 89.4 |
| Msa0573760 | AT5G03040.2 | 30.522 | 249 | 149 | 7 | 1 | 244 | 1 | 230 | 5.57e-19 | 89.4 |
| Msa0573760 | AT3G49380.1 | 39.865 | 148 | 78 | 4 | 84 | 224 | 66 | 209 | 5.92e-18 | 85.5 |
| Msa0573760 | AT3G49260.1 | 56.962 | 79 | 29 | 1 | 110 | 188 | 109 | 182 | 1.03e-17 | 85.5 |
| Msa0573760 | AT3G49260.4 | 56.962 | 79 | 29 | 1 | 110 | 188 | 109 | 182 | 1.03e-17 | 85.5 |
| Msa0573760 | AT3G49260.2 | 56.962 | 79 | 29 | 1 | 110 | 188 | 109 | 182 | 1.03e-17 | 85.5 |
| Msa0573760 | AT3G49260.3 | 56.962 | 79 | 29 | 1 | 110 | 188 | 109 | 182 | 1.11e-17 | 85.5 |
| Msa0573760 | AT1G72670.1 | 48.980 | 98 | 44 | 2 | 94 | 191 | 67 | 158 | 1.53e-17 | 84.7 |
| Msa0573760 | AT2G26180.1 | 60.811 | 74 | 26 | 2 | 104 | 177 | 65 | 135 | 3.97e-17 | 83.6 |
| Msa0573760 | AT3G22190.3 | 74.000 | 50 | 13 | 0 | 128 | 177 | 90 | 139 | 7.02e-16 | 79.7 |
| Msa0573760 | AT3G22190.2 | 74.000 | 50 | 13 | 0 | 128 | 177 | 90 | 139 | 7.02e-16 | 79.7 |
| Msa0573760 | AT3G22190.4 | 74.000 | 50 | 13 | 0 | 128 | 177 | 90 | 139 | 7.02e-16 | 79.7 |
| Msa0573760 | AT3G22190.1 | 74.000 | 50 | 13 | 0 | 128 | 177 | 90 | 139 | 7.02e-16 | 79.7 |
| Msa0573760 | AT1G74690.1 | 52.239 | 67 | 32 | 0 | 124 | 190 | 111 | 177 | 1.23e-15 | 79.7 |
| Msa0573760 | AT3G51380.1 | 59.375 | 64 | 26 | 0 | 125 | 188 | 36 | 99 | 1.51e-15 | 72.8 |
| Msa0573760 | AT1G17480.1 | 44.211 | 95 | 47 | 2 | 94 | 188 | 68 | 156 | 2.07e-15 | 77.8 |
| Msa0573760 | AT5G13460.1 | 55.224 | 67 | 29 | 1 | 119 | 184 | 103 | 169 | 5.42e-15 | 77.0 |
| Msa0573760 | AT1G14380.1 | 50.794 | 63 | 31 | 0 | 128 | 190 | 96 | 158 | 1.16e-14 | 76.6 |
| Msa0573760 | AT1G14380.3 | 50.794 | 63 | 31 | 0 | 128 | 190 | 96 | 158 | 1.16e-14 | 76.6 |
| Msa0573760 | AT1G14380.4 | 50.794 | 63 | 31 | 0 | 128 | 190 | 96 | 158 | 1.16e-14 | 76.6 |
| Msa0573760 | AT1G14380.6 | 46.479 | 71 | 38 | 0 | 120 | 190 | 88 | 158 | 1.32e-14 | 76.6 |
| Msa0573760 | AT1G14380.5 | 46.479 | 71 | 38 | 0 | 120 | 190 | 88 | 158 | 1.32e-14 | 76.6 |
| Msa0573760 | AT1G14380.2 | 46.479 | 71 | 38 | 0 | 120 | 190 | 88 | 158 | 1.32e-14 | 76.6 |
| Msa0573760 | AT1G14380.7 | 46.479 | 71 | 38 | 0 | 120 | 190 | 88 | 158 | 1.44e-14 | 76.3 |
| Msa0573760 | AT2G43680.1 | 48.529 | 68 | 35 | 0 | 125 | 192 | 322 | 389 | 2.32e-14 | 75.9 |
| Msa0573760 | AT2G43680.4 | 48.529 | 68 | 35 | 0 | 125 | 192 | 321 | 388 | 2.35e-14 | 75.9 |
| Msa0573760 | AT2G43680.2 | 48.529 | 68 | 35 | 0 | 125 | 192 | 321 | 388 | 2.35e-14 | 75.9 |
| Msa0573760 | AT2G43680.3 | 48.529 | 68 | 35 | 0 | 125 | 192 | 321 | 388 | 2.35e-14 | 75.9 |
| Msa0573760 | AT2G43680.5 | 48.529 | 68 | 35 | 0 | 125 | 192 | 321 | 388 | 2.35e-14 | 75.9 |
| Msa0573760 | AT5G03960.1 | 30.403 | 273 | 149 | 14 | 128 | 383 | 109 | 357 | 3.43e-14 | 74.3 |
| Msa0573760 | AT5G03960.3 | 30.403 | 273 | 149 | 14 | 128 | 383 | 110 | 358 | 3.64e-14 | 74.3 |
| Msa0573760 | AT5G03960.2 | 30.403 | 273 | 149 | 14 | 128 | 383 | 110 | 358 | 3.64e-14 | 74.3 |
| Msa0573760 | AT3G59690.2 | 44.595 | 74 | 41 | 0 | 129 | 202 | 172 | 245 | 3.91e-14 | 74.7 |
| Msa0573760 | AT3G59690.1 | 44.595 | 74 | 41 | 0 | 129 | 202 | 172 | 245 | 3.91e-14 | 74.7 |
| Msa0573760 | AT1G18840.1 | 28.962 | 183 | 95 | 4 | 124 | 271 | 107 | 289 | 4.63e-14 | 74.7 |
| Msa0573760 | AT1G18840.3 | 28.962 | 183 | 95 | 4 | 124 | 271 | 107 | 289 | 4.63e-14 | 74.7 |
| Msa0573760 | AT1G18840.2 | 28.962 | 183 | 95 | 4 | 124 | 271 | 107 | 289 | 4.63e-14 | 74.7 |
| Msa0573760 | AT2G26410.2 | 36.559 | 93 | 54 | 2 | 125 | 217 | 147 | 234 | 5.99e-12 | 68.2 |
| Msa0573760 | AT2G26410.1 | 36.559 | 93 | 54 | 2 | 125 | 217 | 147 | 234 | 5.99e-12 | 68.2 |
Find 145 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACTTTACCAATCCCTTTA+AGG | 0.101147 | 4_1:+77019838 | None:intergenic |
| CTGAGTTCCATGGACAATTT+TGG | 0.112398 | 4_1:-77020952 | Msa0573760:five_prime_UTR |
| TCAAGATTCAAACCACATTT+AGG | 0.130899 | 4_1:-77020129 | Msa0573760:CDS |
| AATTATTTGTGTACTAATTT+TGG | 0.133667 | 4_1:+77021527 | None:intergenic |
| AATACATCTATTTCAGATTT+TGG | 0.146270 | 4_1:-77019373 | Msa0573760:CDS |
| TCTTGACAGCAGCAAATTTC+TGG | 0.190866 | 4_1:+77020146 | None:intergenic |
| CTTCTTCTAGACCTTGATTT+TGG | 0.205624 | 4_1:+77019397 | None:intergenic |
| AAAAGCACTAAGAGCCTTAA+AGG | 0.206005 | 4_1:-77019852 | Msa0573760:CDS |
| ATCTTTCTTTCTTCTGAATA+TGG | 0.215800 | 4_1:+77021330 | None:intergenic |
| ACAACCTGTTTCTTTGGTTT+AGG | 0.236407 | 4_1:-77021258 | Msa0573760:five_prime_UTR |
| CAACCTGTTTCTTTGGTTTA+GGG | 0.237920 | 4_1:-77021257 | Msa0573760:five_prime_UTR |
| GAGGTCTTGTTCACAGATTC+AGG | 0.240656 | 4_1:-77018960 | Msa0573760:CDS |
| ACAATCACAACCTGTTTCTT+TGG | 0.254531 | 4_1:-77021264 | Msa0573760:five_prime_UTR |
| TCGTTATAATTTCTTTGATT+TGG | 0.255159 | 4_1:+77019286 | None:intergenic |
| TTCAATGAAAGCCTCTTCTT+TGG | 0.256964 | 4_1:+77019028 | None:intergenic |
| AGTAATTTGCAGACATATAG+TGG | 0.276513 | 4_1:-77018739 | Msa0573760:three_prime_UTR |
| CTCTTCTTTGGACCCGGTTC+AGG | 0.283493 | 4_1:+77019040 | None:intergenic |
| CTTCTCAGTTTCTGAGTAGA+AGG | 0.288946 | 4_1:+77020306 | None:intergenic |
| CAAGATTCAAACCACATTTA+GGG | 0.295458 | 4_1:-77020128 | Msa0573760:CDS |
| CCCATTGGTTGTAGTGTTTG+AGG | 0.307809 | 4_1:+77020535 | None:intergenic |
| CAAACTCTTGAACCACCTTA+TGG | 0.313211 | 4_1:+77020507 | None:intergenic |
| GAATCAGATTGGGGAATAAC+AGG | 0.318999 | 4_1:-77019265 | Msa0573760:CDS |
| AAAATAGTAGAAGTTGATAC+TGG | 0.320907 | 4_1:-77019424 | Msa0573760:CDS |
| AAGGATAATAACAATGATAA+TGG | 0.323050 | 4_1:-77018685 | Msa0573760:three_prime_UTR |
| AGAAAGAAAGATGAATTATT+CGG | 0.330471 | 4_1:-77021319 | Msa0573760:five_prime_UTR |
| AGGTGGTTCAAGAGTTTGTT+TGG | 0.341417 | 4_1:-77020502 | Msa0573760:CDS |
| TTTAAGGACAAGTCGCTCAT+AGG | 0.358291 | 4_1:-77021049 | Msa0573760:five_prime_UTR |
| TCCGAAGCAACGACCTGAAC+CGG | 0.358894 | 4_1:-77019053 | Msa0573760:CDS |
| AACACAAACAGTTATGATAT+TGG | 0.363590 | 4_1:-77019454 | Msa0573760:CDS |
| ACAATCACAATGAGAGTAAC+AGG | 0.363980 | 4_1:-77019546 | Msa0573760:CDS |
| AACCACATTTAGGGGTTACT+TGG | 0.370720 | 4_1:-77020119 | Msa0573760:intron |
| TTCACCTGCAGAAGCTGCTT+GGG | 0.371771 | 4_1:-77020335 | Msa0573760:CDS |
| TGTGTATTAGCCATGTAATT+AGG | 0.372058 | 4_1:+77019109 | None:intergenic |
| CCCGGTTCAGGTCGTTGCTT+CGG | 0.376126 | 4_1:+77019052 | None:intergenic |
| AGAGCATCATAGGTAGTAGT+AGG | 0.379798 | 4_1:-77021444 | Msa0573760:five_prime_UTR |
| GAAGAAAGTGTTTGAAATGA+AGG | 0.395473 | 4_1:+77019343 | None:intergenic |
| GAAATTATAACGAATCAGAT+TGG | 0.399844 | 4_1:-77019276 | Msa0573760:CDS |
| TTTGAGAAATCTTCAGAAGA+TGG | 0.404300 | 4_1:+77020409 | None:intergenic |
| GATAATCTTCTACTGTGAAT+AGG | 0.405943 | 4_1:+77019502 | None:intergenic |
| GCTTTCATTGAATGAATTGA+TGG | 0.408300 | 4_1:-77019017 | Msa0573760:CDS |
| ATTCCCTAAACCAAAGAAAC+AGG | 0.413296 | 4_1:+77021254 | None:intergenic |
| TCCACACCTAAAACAATTTG+TGG | 0.416291 | 4_1:-77019166 | Msa0573760:CDS |
| CACGGCAGAGACACCATGTT+TGG | 0.420310 | 4_1:-77020178 | Msa0573760:CDS |
| TGCTCAAGCTGCCGTGGCTG+TGG | 0.423779 | 4_1:-77020215 | Msa0573760:CDS |
| CGCGGTAGTTCACCTTCCAT+TGG | 0.427383 | 4_1:-77018441 | Msa0573760:three_prime_UTR |
| ACATATAGTGGGTAGGGAAC+AGG | 0.432970 | 4_1:-77018727 | Msa0573760:three_prime_UTR |
| CACCTTATGGTTCTACCCAT+TGG | 0.436819 | 4_1:+77020520 | None:intergenic |
| AAATTATAACGAATCAGATT+GGG | 0.438371 | 4_1:-77019275 | Msa0573760:CDS |
| GAAGAGAAGTGAAACAGAAC+AGG | 0.439533 | 4_1:+77020980 | None:intergenic |
| GTGCAGTTAGAGAGCATCAT+AGG | 0.442482 | 4_1:-77021454 | Msa0573760:five_prime_UTR |
| AGTAGTAGGGTGTGTGTTGG+AGG | 0.449841 | 4_1:-77021430 | Msa0573760:five_prime_UTR |
| GGTGGTTCAAGAGTTTGTTT+GGG | 0.450917 | 4_1:-77020501 | Msa0573760:CDS |
| GGTTGTAGTGTTTGAGGACT+TGG | 0.452799 | 4_1:+77020541 | None:intergenic |
| TTTCACCTGCAGAAGCTGCT+TGG | 0.462289 | 4_1:-77020336 | Msa0573760:CDS |
| CAAATTCTTCAAGTACCAAA+TGG | 0.468429 | 4_1:-77020450 | Msa0573760:CDS |
| GATATATTTGTTACAAGGGA+AGG | 0.474728 | 4_1:-77021138 | Msa0573760:five_prime_UTR |
| AGCAGCTGCAGATGCTGCTG+TGG | 0.475597 | 4_1:-77020242 | Msa0573760:CDS |
| TCAGAAGATGGATGAGGAAG+AGG | 0.481486 | 4_1:+77020421 | None:intergenic |
| AGGAAGAGGAGGATTCCATT+TGG | 0.484441 | 4_1:+77020435 | None:intergenic |
| CATGGTGTCTCTGCCGTGGC+TGG | 0.487332 | 4_1:+77020183 | None:intergenic |
| GAAGATGGATGAGGAAGAGG+AGG | 0.491377 | 4_1:+77020424 | None:intergenic |
| GGCAGCTGCTCAAGCTGCCG+TGG | 0.491635 | 4_1:-77020221 | Msa0573760:CDS |
| AGCTTCTGCAGGTGAAATGT+TGG | 0.492749 | 4_1:+77020342 | None:intergenic |
| ACTAAGAGCCTTAAAGGGAT+TGG | 0.494308 | 4_1:-77019846 | Msa0573760:CDS |
| AAAGCACTAAGAGCCTTAAA+GGG | 0.503582 | 4_1:-77019851 | Msa0573760:CDS |
| GAAAGCCTCTTCTTTGGACC+CGG | 0.504577 | 4_1:+77019034 | None:intergenic |
| TTGCAGACATATAGTGGGTA+GGG | 0.506722 | 4_1:-77018733 | Msa0573760:three_prime_UTR |
| TGTGTGTTGGAGGAGGAAAA+AGG | 0.507103 | 4_1:-77021420 | Msa0573760:five_prime_UTR |
| ATGTTGGGAGGTATGGTAGC+TGG | 0.507636 | 4_1:+77020358 | None:intergenic |
| GAGGAGCAATACCGTGTGTC+CGG | 0.508894 | 4_1:-77018845 | Msa0573760:three_prime_UTR |
| TACATATATAATTTCACTGT+GGG | 0.510884 | 4_1:-77021003 | Msa0573760:five_prime_UTR |
| CGTTGCAGCGGCTACCGCAA+TGG | 0.511750 | 4_1:+77020267 | None:intergenic |
| GCTTCTGCAGGTGAAATGTT+GGG | 0.511883 | 4_1:+77020343 | None:intergenic |
| TTAAGGACAAGTCGCTCATA+GGG | 0.512078 | 4_1:-77021048 | Msa0573760:five_prime_UTR |
| TCCTCAAACACTACAACCAA+TGG | 0.516555 | 4_1:-77020536 | Msa0573760:exon |
| CATTGCGGTAGCCGCTGCAA+CGG | 0.517072 | 4_1:-77020266 | Msa0573760:CDS |
| AAGTTGATATATTTGTTACA+AGG | 0.522968 | 4_1:-77021143 | Msa0573760:five_prime_UTR |
| AGTAGGGTGTGTGTTGGAGG+AGG | 0.526544 | 4_1:-77021427 | Msa0573760:five_prime_UTR |
| TGCAGCTGCTGCCGTTGCAG+CGG | 0.526558 | 4_1:+77020255 | None:intergenic |
| AGGTGAAATGTTGGGAGGTA+TGG | 0.527096 | 4_1:+77020351 | None:intergenic |
| GGATAAATCAAATTCTTGAA+AGG | 0.527316 | 4_1:+77020880 | None:intergenic |
| TTCACAAGTTCATGTAGTTG+TGG | 0.530100 | 4_1:-77019202 | Msa0573760:CDS |
| TGAACCCAAGCAGCTTCTGC+AGG | 0.533983 | 4_1:+77020331 | None:intergenic |
| TGGTAATTATCCTAATTACA+TGG | 0.537197 | 4_1:-77019119 | Msa0573760:CDS |
| GAGCATCATAGGTAGTAGTA+GGG | 0.544688 | 4_1:-77021443 | Msa0573760:five_prime_UTR |
| TAATAATGAATGAAAATGTA+CGG | 0.546083 | 4_1:+77018653 | None:intergenic |
| CTGGTGTCCACCACCAAACA+TGG | 0.547498 | 4_1:+77020165 | None:intergenic |
| TAAGTCAAGACAGAAATTGA+AGG | 0.547849 | 4_1:-77018704 | Msa0573760:three_prime_UTR |
| TTAGAGCACAAGCAACAGTA+AGG | 0.547989 | 4_1:-77019745 | Msa0573760:CDS |
| AACCAATGGGTAGAACCATA+AGG | 0.549465 | 4_1:-77020522 | Msa0573760:exon |
| AAAAGTTGTAAAAGAAGAAG+TGG | 0.552962 | 4_1:+77020914 | None:intergenic |
| AGTTGATATATTTGTTACAA+GGG | 0.554875 | 4_1:-77021142 | Msa0573760:five_prime_UTR |
| GAAAGACCCAAAATTGTCCA+TGG | 0.555568 | 4_1:+77020945 | None:intergenic |
| TCAAGAATTTGATTTATCCA+AGG | 0.556046 | 4_1:-77020876 | Msa0573760:intron |
| GGCAGAGACACCATGTTTGG+TGG | 0.556180 | 4_1:-77020175 | Msa0573760:CDS |
| TGAGATGGAGTAACTTGAAG+TGG | 0.559558 | 4_1:+77019319 | None:intergenic |
| CCTCAAACACTACAACCAAT+GGG | 0.560238 | 4_1:-77020535 | Msa0573760:exon |
| GGTAGTAGTAGGGTGTGTGT+TGG | 0.560562 | 4_1:-77021433 | Msa0573760:five_prime_UTR |
| TTTGGAATGTATAACTGAGA+TGG | 0.561938 | 4_1:+77019304 | None:intergenic |
| ATATATTTGTTACAAGGGAA+GGG | 0.570084 | 4_1:-77021137 | Msa0573760:five_prime_UTR |
| AAAGTTTCTATCAAAATCAG+TGG | 0.570713 | 4_1:+77018892 | None:intergenic |
| GAATAAAAGCTAGTGTCCAA+TGG | 0.574162 | 4_1:+77018425 | None:intergenic |
| AAATCTTCAGAAGATGGATG+AGG | 0.576752 | 4_1:+77020415 | None:intergenic |
| TTTGCAGACATATAGTGGGT+AGG | 0.577518 | 4_1:-77018734 | Msa0573760:three_prime_UTR |
| AAGAAAGTGTTTGAAATGAA+GGG | 0.579860 | 4_1:+77019344 | None:intergenic |
| GTAAGGTCTCATAAATCTCG+TGG | 0.580107 | 4_1:-77019728 | Msa0573760:CDS |
| CCGAAGCAACGACCTGAACC+GGG | 0.581233 | 4_1:-77019052 | Msa0573760:CDS |
| AAAAGCTAGTGTCCAATGGA+AGG | 0.582375 | 4_1:+77018429 | None:intergenic |
| ATACTGGGAGACCAAAATCA+AGG | 0.588324 | 4_1:-77019408 | Msa0573760:CDS |
| GTAATTTGCAGACATATAGT+GGG | 0.590203 | 4_1:-77018738 | Msa0573760:three_prime_UTR |
| GCAGAGGAGGTTGTGATCCG+AGG | 0.590878 | 4_1:-77018864 | Msa0573760:exon |
| TGACATGGACACCGGACACA+CGG | 0.595108 | 4_1:+77018834 | None:intergenic |
| GAATCTAGAAACAGTTTGAG+TGG | 0.595203 | 4_1:-77018995 | Msa0573760:CDS |
| CTGAACCGGGTCCAAAGAAG+AGG | 0.595822 | 4_1:-77019039 | Msa0573760:CDS |
| TACGTGAATGCTTGTTTCCG+CGG | 0.596829 | 4_1:-77018459 | Msa0573760:three_prime_UTR |
| AGTTGTAAAAGAAGAAGTGG+TGG | 0.597309 | 4_1:+77020917 | None:intergenic |
| CTTCTACTCAGAAACTGAGA+AGG | 0.603333 | 4_1:-77020305 | Msa0573760:CDS |
| TCAGAGTCTTTGCTTCAAAG+TGG | 0.605537 | 4_1:-77018814 | Msa0573760:three_prime_UTR |
| AAGGGAAGGGAAGATTAACT+AGG | 0.607980 | 4_1:-77021124 | Msa0573760:five_prime_UTR |
| AAGATTCAAACCACATTTAG+GGG | 0.612338 | 4_1:-77020127 | Msa0573760:CDS |
| GGACACACGGTATTGCTCCT+CGG | 0.617095 | 4_1:+77018847 | None:intergenic |
| AATCAGATTGGGGAATAACA+GGG | 0.619966 | 4_1:-77019264 | Msa0573760:CDS |
| AACAGGTTGTGATTGTGAGT+AGG | 0.621297 | 4_1:+77021271 | None:intergenic |
| TTCTCAAAGAGAGATTCAAG+AGG | 0.623344 | 4_1:-77020394 | Msa0573760:CDS |
| AAATAGTAGAAGTTGATACT+GGG | 0.623787 | 4_1:-77019423 | Msa0573760:CDS |
| GCAAAACAAGCACGCCATTG+CGG | 0.624569 | 4_1:-77020281 | Msa0573760:CDS |
| AATTATAACGAATCAGATTG+GGG | 0.625222 | 4_1:-77019274 | Msa0573760:CDS |
| AAGTTACAAGCACTAGTGAG+AGG | 0.625999 | 4_1:-77019821 | Msa0573760:CDS |
| TACCAAGTAACCCCTAAATG+TGG | 0.626457 | 4_1:+77020117 | None:intergenic |
| AGAGACACCATGTTTGGTGG+TGG | 0.631631 | 4_1:-77020172 | Msa0573760:CDS |
| CAAACATGGTGTCTCTGCCG+TGG | 0.633256 | 4_1:+77020179 | None:intergenic |
| TGAGTGGAGTTAGAATGCAG+AGG | 0.635623 | 4_1:-77018979 | Msa0573760:CDS |
| TAGTGAGAGGGTACTTAGTG+AGG | 0.636507 | 4_1:-77019808 | Msa0573760:CDS |
| AACACAAGCAAGAAGATCCA+CGG | 0.640199 | 4_1:-77019663 | Msa0573760:intron |
| AAAGACTCTGACATGGACAC+CGG | 0.648041 | 4_1:+77018826 | None:intergenic |
| TTGAAGCAAAGACTCTGACA+TGG | 0.648420 | 4_1:+77018819 | None:intergenic |
| CAATGGAAGGTGAACTACCG+CGG | 0.661973 | 4_1:+77018442 | None:intergenic |
| AGTTACAAGCACTAGTGAGA+GGG | 0.662861 | 4_1:-77019820 | Msa0573760:CDS |
| GGTTAGTCTAACCACAGCCA+CGG | 0.665299 | 4_1:+77020204 | None:intergenic |
| ATCAGATTGGGGAATAACAG+GGG | 0.680098 | 4_1:-77019263 | Msa0573760:CDS |
| GTGGTTAGACTAACCAGCCA+CGG | 0.685200 | 4_1:-77020196 | Msa0573760:CDS |
| CTACATGAACTTGTGAAACG+TGG | 0.697658 | 4_1:+77019208 | None:intergenic |
| TCTGCAGGTGAAATGTTGGG+AGG | 0.713997 | 4_1:+77020346 | None:intergenic |
| CAATGGGTAGAACCATAAGG+TGG | 0.722361 | 4_1:-77020519 | Msa0573760:CDS |
| ATACATATATAATTTCACTG+TGG | 0.732593 | 4_1:-77021004 | Msa0573760:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTTGTGTACTAATTT+TGG | + | chr4_1:77018448-77018467 | None:intergenic | 15.0% |
| !! | TAATAATGAATGAAAATGTA+CGG | + | chr4_1:77021322-77021341 | None:intergenic | 15.0% |
| !!! | TCTAAAAAGCTATCTTTTAT+TGG | - | chr4_1:77018590-77018609 | Msa0573760:three_prime_UTR | 20.0% |
| !! | AGAAAGAAAGATGAATTATT+CGG | - | chr4_1:77018653-77018672 | Msa0573760:three_prime_UTR | 20.0% |
| !!! | AAGTTGATATATTTGTTACA+AGG | - | chr4_1:77018829-77018848 | Msa0573760:three_prime_UTR | 20.0% |
| !!! | AGTTGATATATTTGTTACAA+GGG | - | chr4_1:77018830-77018849 | Msa0573760:three_prime_UTR | 20.0% |
| !! | ATACATATATAATTTCACTG+TGG | - | chr4_1:77018968-77018987 | Msa0573760:CDS | 20.0% |
| !! | TACATATATAATTTCACTGT+GGG | - | chr4_1:77018969-77018988 | Msa0573760:CDS | 20.0% |
| !! | TGTTTAATAGTAACATAACA+TGG | - | chr4_1:77019154-77019173 | Msa0573760:CDS | 20.0% |
| !!! | GAAATTGGTTTTTCTATAAT+AGG | - | chr4_1:77020093-77020112 | Msa0573760:intron | 20.0% |
| !!! | AATACATCTATTTCAGATTT+TGG | - | chr4_1:77020599-77020618 | Msa0573760:intron | 20.0% |
| !! | TCGTTATAATTTCTTTGATT+TGG | + | chr4_1:77020689-77020708 | None:intergenic | 20.0% |
| !! | AAATTATAACGAATCAGATT+GGG | - | chr4_1:77020697-77020716 | Msa0573760:intron | 20.0% |
| !! | AAGGATAATAACAATGATAA+TGG | - | chr4_1:77021287-77021306 | Msa0573760:five_prime_UTR | 20.0% |
| ! | AAAGAAAAAAGATGAAGAGT+AGG | - | chr4_1:77018496-77018515 | Msa0573760:intron | 25.0% |
| ! | ATCTTTCTTTCTTCTGAATA+TGG | + | chr4_1:77018645-77018664 | None:intergenic | 25.0% |
| !! | ATATATTTGTTACAAGGGAA+GGG | - | chr4_1:77018835-77018854 | Msa0573760:three_prime_UTR | 25.0% |
| !!! | TGAGGTATCTATCTTTTTTA+AGG | - | chr4_1:77018907-77018926 | Msa0573760:CDS | 25.0% |
| ! | AAAAGTTGTAAAAGAAGAAG+TGG | + | chr4_1:77019061-77019080 | None:intergenic | 25.0% |
| ! | GGATAAATCAAATTCTTGAA+AGG | + | chr4_1:77019095-77019114 | None:intergenic | 25.0% |
| !! | TCAAGAATTTGATTTATCCA+AGG | - | chr4_1:77019096-77019115 | Msa0573760:CDS | 25.0% |
| !! | AGAATGTGAGAATTTGAAAT+TGG | - | chr4_1:77020078-77020097 | Msa0573760:intron | 25.0% |
| !!! | TCTTATGATTGTTATTTTGC+AGG | - | chr4_1:77020397-77020416 | Msa0573760:CDS | 25.0% |
| ! | AACACAAACAGTTATGATAT+TGG | - | chr4_1:77020518-77020537 | Msa0573760:CDS | 25.0% |
| !! | GTATCAACTTCTACTATTTT+TGG | + | chr4_1:77020548-77020567 | None:intergenic | 25.0% |
| !!! | AAAATAGTAGAAGTTGATAC+TGG | - | chr4_1:77020548-77020567 | Msa0573760:five_prime_UTR | 25.0% |
| !!! | AAATAGTAGAAGTTGATACT+GGG | - | chr4_1:77020549-77020568 | Msa0573760:five_prime_UTR | 25.0% |
| !!! | AAGAAAGTGTTTGAAATGAA+GGG | + | chr4_1:77020631-77020650 | None:intergenic | 25.0% |
| ! | GAAATTATAACGAATCAGAT+TGG | - | chr4_1:77020696-77020715 | Msa0573760:intron | 25.0% |
| ! | AATTATAACGAATCAGATTG+GGG | - | chr4_1:77020698-77020717 | Msa0573760:intron | 25.0% |
| !!! | AGTTTTTACATTGGTGATTA+TGG | - | chr4_1:77020833-77020852 | Msa0573760:intron | 25.0% |
| ! | TGGTAATTATCCTAATTACA+TGG | - | chr4_1:77020853-77020872 | Msa0573760:intron | 25.0% |
| ! | AAAGTTTCTATCAAAATCAG+TGG | + | chr4_1:77021083-77021102 | None:intergenic | 25.0% |
| !!! | GGTTAGTCAAGTTTTTTTTT+AGG | - | chr4_1:77021416-77021435 | Msa0573760:five_prime_UTR | 25.0% |
| ! | TCCAATTAGTTAAACAGTTA+TGG | - | chr4_1:77021480-77021499 | Msa0573760:five_prime_UTR | 25.0% |
| ! | ACCATAACTGTTTAACTAAT+TGG | + | chr4_1:77021484-77021503 | None:intergenic | 25.0% |
| ! | TTTCTATTTTCTCAGCTACT+TGG | + | chr4_1:77018775-77018794 | None:intergenic | 30.0% |
| ! | GATATATTTGTTACAAGGGA+AGG | - | chr4_1:77018834-77018853 | Msa0573760:three_prime_UTR | 30.0% |
| !!! | TCAGATATTTTAAGACACTG+AGG | - | chr4_1:77018889-77018908 | Msa0573760:CDS | 30.0% |
| GTAGTAAAAAAGAATCACCT+TGG | + | chr4_1:77019116-77019135 | None:intergenic | 30.0% | |
| ! | ATGTAATGTAGTTTTTCACG+AGG | - | chr4_1:77019325-77019344 | Msa0573760:CDS | 30.0% |
| !!! | TGACTTGTTTGTGTTTTTGT+AGG | - | chr4_1:77019373-77019392 | Msa0573760:CDS | 30.0% |
| CAAATTCTTCAAGTACCAAA+TGG | - | chr4_1:77019522-77019541 | Msa0573760:CDS | 30.0% | |
| TTTGAGAAATCTTCAGAAGA+TGG | + | chr4_1:77019566-77019585 | None:intergenic | 30.0% | |
| TCAAGATTCAAACCACATTT+AGG | - | chr4_1:77019843-77019862 | Msa0573760:CDS | 30.0% | |
| CAAGATTCAAACCACATTTA+GGG | - | chr4_1:77019844-77019863 | Msa0573760:CDS | 30.0% | |
| AAGATTCAAACCACATTTAG+GGG | - | chr4_1:77019845-77019864 | Msa0573760:CDS | 30.0% | |
| TAACTTTACCAATCCCTTTA+AGG | + | chr4_1:77020137-77020156 | None:intergenic | 30.0% | |
| ! | TCTGTTTATGTATTTTACCG+TGG | + | chr4_1:77020329-77020348 | None:intergenic | 30.0% |
| !!! | TGATTGTTATTTTGCAGGAA+AGG | - | chr4_1:77020402-77020421 | Msa0573760:CDS | 30.0% |
| GATAATCTTCTACTGTGAAT+AGG | + | chr4_1:77020473-77020492 | None:intergenic | 30.0% | |
| !! | GAAGAAAGTGTTTGAAATGA+AGG | + | chr4_1:77020632-77020651 | None:intergenic | 30.0% |
| ! | TTTGGAATGTATAACTGAGA+TGG | + | chr4_1:77020671-77020690 | None:intergenic | 30.0% |
| ! | CTATCTCCACAAATTGTTTT+AGG | + | chr4_1:77020815-77020834 | None:intergenic | 30.0% |
| ! | TGTGGAGATAGTTTTTACAT+TGG | - | chr4_1:77020824-77020843 | Msa0573760:intron | 30.0% |
| TGTGTATTAGCCATGTAATT+AGG | + | chr4_1:77020866-77020885 | None:intergenic | 30.0% | |
| !!! | AGTCTTTTAAGGCTAAATTG+AGG | - | chr4_1:77020885-77020904 | Msa0573760:five_prime_UTR | 30.0% |
| GCTTTCATTGAATGAATTGA+TGG | - | chr4_1:77020955-77020974 | Msa0573760:five_prime_UTR | 30.0% | |
| ! | ATAGAAACTTTTCAAAGCAG+AGG | - | chr4_1:77021092-77021111 | Msa0573760:five_prime_UTR | 30.0% |
| ! | AGTAATTTGCAGACATATAG+TGG | - | chr4_1:77021233-77021252 | Msa0573760:five_prime_UTR | 30.0% |
| ! | GTAATTTGCAGACATATAGT+GGG | - | chr4_1:77021234-77021253 | Msa0573760:five_prime_UTR | 30.0% |
| TAAGTCAAGACAGAAATTGA+AGG | - | chr4_1:77021268-77021287 | Msa0573760:five_prime_UTR | 30.0% | |
| ! | ACAGTTCTGCTTCTTTTATT+TGG | - | chr4_1:77021395-77021414 | Msa0573760:five_prime_UTR | 30.0% |
| ! | ACAATCACAACCTGTTTCTT+TGG | - | chr4_1:77018708-77018727 | Msa0573760:three_prime_UTR | 35.0% |
| ! | ACAACCTGTTTCTTTGGTTT+AGG | - | chr4_1:77018714-77018733 | Msa0573760:three_prime_UTR | 35.0% |
| ! | CAACCTGTTTCTTTGGTTTA+GGG | - | chr4_1:77018715-77018734 | Msa0573760:three_prime_UTR | 35.0% |
| ATTCCCTAAACCAAAGAAAC+AGG | + | chr4_1:77018721-77018740 | None:intergenic | 35.0% | |
| ! | TCTTCTTTTTCTGAGTTCCA+TGG | - | chr4_1:77019010-77019029 | Msa0573760:CDS | 35.0% |
| ! | TGAGTTCCATGGACAATTTT+GGG | - | chr4_1:77019021-77019040 | Msa0573760:CDS | 35.0% |
| AGTTGTAAAAGAAGAAGTGG+TGG | + | chr4_1:77019058-77019077 | None:intergenic | 35.0% | |
| !! | TTTTCACGAGGCATTTTCTT+TGG | - | chr4_1:77019337-77019356 | Msa0573760:CDS | 35.0% |
| AAATCTTCAGAAGATGGATG+AGG | + | chr4_1:77019560-77019579 | None:intergenic | 35.0% | |
| TTCTCAAAGAGAGATTCAAG+AGG | - | chr4_1:77019578-77019597 | Msa0573760:intron | 35.0% | |
| ACAAGTCAGATTCACATTCT+AGG | - | chr4_1:77019957-77019976 | Msa0573760:intron | 35.0% | |
| !! | AAAAGCACTAAGAGCCTTAA+AGG | - | chr4_1:77020120-77020139 | Msa0573760:CDS | 35.0% |
| ! | AAAGCACTAAGAGCCTTAAA+GGG | - | chr4_1:77020121-77020140 | Msa0573760:CDS | 35.0% |
| ACAATCACAATGAGAGTAAC+AGG | - | chr4_1:77020426-77020445 | Msa0573760:CDS | 35.0% | |
| ! | CTTCTTCTAGACCTTGATTT+TGG | + | chr4_1:77020578-77020597 | None:intergenic | 35.0% |
| AATCAGATTGGGGAATAACA+GGG | - | chr4_1:77020708-77020727 | Msa0573760:intron | 35.0% | |
| ! | GGAAGAATGCAGATTTTCAA+CGG | - | chr4_1:77020730-77020749 | Msa0573760:intron | 35.0% |
| TTCACAAGTTCATGTAGTTG+TGG | - | chr4_1:77020770-77020789 | Msa0573760:intron | 35.0% | |
| !!! | CAAATTGTTTTAGGTGTGGA+AGG | + | chr4_1:77020806-77020825 | None:intergenic | 35.0% |
| TCCACACCTAAAACAATTTG+TGG | - | chr4_1:77020806-77020825 | Msa0573760:intron | 35.0% | |
| !!! | TCCACAAATTGTTTTAGGTG+TGG | + | chr4_1:77020810-77020829 | None:intergenic | 35.0% |
| ! | GGCTAATACACAGTCTTTTA+AGG | - | chr4_1:77020874-77020893 | Msa0573760:intron | 35.0% |
| TTCAATGAAAGCCTCTTCTT+TGG | + | chr4_1:77020947-77020966 | None:intergenic | 35.0% | |
| GAATCTAGAAACAGTTTGAG+TGG | - | chr4_1:77020977-77020996 | Msa0573760:five_prime_UTR | 35.0% | |
| ! | AGAGCATCATAGGTAGTAGT+AGG | - | chr4_1:77018528-77018547 | Msa0573760:three_prime_UTR | 40.0% |
| GAGCATCATAGGTAGTAGTA+GGG | - | chr4_1:77018529-77018548 | Msa0573760:three_prime_UTR | 40.0% | |
| AACAGGTTGTGATTGTGAGT+AGG | + | chr4_1:77018704-77018723 | None:intergenic | 40.0% | |
| AAGGGAAGGGAAGATTAACT+AGG | - | chr4_1:77018848-77018867 | Msa0573760:three_prime_UTR | 40.0% | |
| TTTAAGGACAAGTCGCTCAT+AGG | - | chr4_1:77018923-77018942 | Msa0573760:CDS | 40.0% | |
| TTAAGGACAAGTCGCTCATA+GGG | - | chr4_1:77018924-77018943 | Msa0573760:CDS | 40.0% | |
| GAAGAGAAGTGAAACAGAAC+AGG | + | chr4_1:77018995-77019014 | None:intergenic | 40.0% | |
| ! | CTGAGTTCCATGGACAATTT+TGG | - | chr4_1:77019020-77019039 | Msa0573760:CDS | 40.0% |
| GAAAGACCCAAAATTGTCCA+TGG | + | chr4_1:77019030-77019049 | None:intergenic | 40.0% | |
| AGAGTGTGACATTGCATTGT+GGG | + | chr4_1:77019222-77019241 | None:intergenic | 40.0% | |
| TAGAGTGTGACATTGCATTG+TGG | + | chr4_1:77019223-77019242 | None:intergenic | 40.0% | |
| !! | AAAACACACCTCTGGAACAT+GGG | + | chr4_1:77019301-77019320 | None:intergenic | 40.0% |
| !! | AAAAACACACCTCTGGAACA+TGG | + | chr4_1:77019302-77019321 | None:intergenic | 40.0% |
| ACATGACAAAAACACACCTC+TGG | + | chr4_1:77019309-77019328 | None:intergenic | 40.0% | |
| TCCTCAAACACTACAACCAA+TGG | - | chr4_1:77019436-77019455 | Msa0573760:CDS | 40.0% | |
| CCTCAAACACTACAACCAAT+GGG | - | chr4_1:77019437-77019456 | Msa0573760:CDS | 40.0% | |
| AACCAATGGGTAGAACCATA+AGG | - | chr4_1:77019450-77019469 | Msa0573760:CDS | 40.0% | |
| CAAACTCTTGAACCACCTTA+TGG | + | chr4_1:77019468-77019487 | None:intergenic | 40.0% | |
| ! | AGGTGGTTCAAGAGTTTGTT+TGG | - | chr4_1:77019470-77019489 | Msa0573760:CDS | 40.0% |
| ! | GGTGGTTCAAGAGTTTGTTT+GGG | - | chr4_1:77019471-77019490 | Msa0573760:CDS | 40.0% |
| CTTCTCAGTTTCTGAGTAGA+AGG | + | chr4_1:77019669-77019688 | None:intergenic | 40.0% | |
| CTTCTACTCAGAAACTGAGA+AGG | - | chr4_1:77019667-77019686 | Msa0573760:CDS | 40.0% | |
| TCTTGACAGCAGCAAATTTC+TGG | + | chr4_1:77019829-77019848 | None:intergenic | 40.0% | |
| AACCACATTTAGGGGTTACT+TGG | - | chr4_1:77019853-77019872 | Msa0573760:CDS | 40.0% | |
| TACCAAGTAACCCCTAAATG+TGG | + | chr4_1:77019858-77019877 | None:intergenic | 40.0% | |
| ACTAAGAGCCTTAAAGGGAT+TGG | - | chr4_1:77020126-77020145 | Msa0573760:CDS | 40.0% | |
| AAGTTACAAGCACTAGTGAG+AGG | - | chr4_1:77020151-77020170 | Msa0573760:CDS | 40.0% | |
| AGTTACAAGCACTAGTGAGA+GGG | - | chr4_1:77020152-77020171 | Msa0573760:CDS | 40.0% | |
| TTAGAGCACAAGCAACAGTA+AGG | - | chr4_1:77020227-77020246 | Msa0573760:CDS | 40.0% | |
| GTAAGGTCTCATAAATCTCG+TGG | - | chr4_1:77020244-77020263 | Msa0573760:CDS | 40.0% | |
| AACACAAGCAAGAAGATCCA+CGG | - | chr4_1:77020309-77020328 | Msa0573760:CDS | 40.0% | |
| ATACTGGGAGACCAAAATCA+AGG | - | chr4_1:77020564-77020583 | Msa0573760:five_prime_UTR | 40.0% | |
| TGAGATGGAGTAACTTGAAG+TGG | + | chr4_1:77020656-77020675 | None:intergenic | 40.0% | |
| GAATCAGATTGGGGAATAAC+AGG | - | chr4_1:77020707-77020726 | Msa0573760:intron | 40.0% | |
| ATCAGATTGGGGAATAACAG+GGG | - | chr4_1:77020709-77020728 | Msa0573760:intron | 40.0% | |
| CTACATGAACTTGTGAAACG+TGG | + | chr4_1:77020767-77020786 | None:intergenic | 40.0% | |
| ! | GAAACTTTTCAAAGCAGAGG+AGG | - | chr4_1:77021095-77021114 | Msa0573760:five_prime_UTR | 40.0% |
| TTGAAGCAAAGACTCTGACA+TGG | + | chr4_1:77021156-77021175 | None:intergenic | 40.0% | |
| TCAGAGTCTTTGCTTCAAAG+TGG | - | chr4_1:77021158-77021177 | Msa0573760:five_prime_UTR | 40.0% | |
| !! | TTTGCAGACATATAGTGGGT+AGG | - | chr4_1:77021238-77021257 | Msa0573760:five_prime_UTR | 40.0% |
| !! | TTGCAGACATATAGTGGGTA+GGG | - | chr4_1:77021239-77021258 | Msa0573760:five_prime_UTR | 40.0% |
| AAAAGCTAGTGTCCAATGGA+AGG | + | chr4_1:77021546-77021565 | None:intergenic | 40.0% | |
| !! | GTGCAGTTAGAGAGCATCAT+AGG | - | chr4_1:77018518-77018537 | Msa0573760:three_prime_UTR | 45.0% |
| TGTGTGTTGGAGGAGGAAAA+AGG | - | chr4_1:77018552-77018571 | Msa0573760:three_prime_UTR | 45.0% | |
| GAGTGTGACATTGCATTGTG+GGG | + | chr4_1:77019221-77019240 | None:intergenic | 45.0% | |
| !! | AAACACACCTCTGGAACATG+GGG | + | chr4_1:77019300-77019319 | None:intergenic | 45.0% |
| GGTTGTAGTGTTTGAGGACT+TGG | + | chr4_1:77019434-77019453 | None:intergenic | 45.0% | |
| ! | CCCATTGGTTGTAGTGTTTG+AGG | + | chr4_1:77019440-77019459 | None:intergenic | 45.0% |
| ! | CACCTTATGGTTCTACCCAT+TGG | + | chr4_1:77019455-77019474 | None:intergenic | 45.0% |
| CAATGGGTAGAACCATAAGG+TGG | - | chr4_1:77019453-77019472 | Msa0573760:CDS | 45.0% | |
| AGGAAGAGGAGGATTCCATT+TGG | + | chr4_1:77019540-77019559 | None:intergenic | 45.0% | |
| TCAGAAGATGGATGAGGAAG+AGG | + | chr4_1:77019554-77019573 | None:intergenic | 45.0% | |
| AGGTGAAATGTTGGGAGGTA+TGG | + | chr4_1:77019624-77019643 | None:intergenic | 45.0% | |
| GCTTCTGCAGGTGAAATGTT+GGG | + | chr4_1:77019632-77019651 | None:intergenic | 45.0% | |
| AGCTTCTGCAGGTGAAATGT+TGG | + | chr4_1:77019633-77019652 | None:intergenic | 45.0% | |
| !! | TAGTGAGAGGGTACTTAGTG+AGG | - | chr4_1:77020164-77020183 | Msa0573760:CDS | 45.0% |
| TGAGTGGAGTTAGAATGCAG+AGG | - | chr4_1:77020993-77021012 | Msa0573760:five_prime_UTR | 45.0% | |
| !! | GAGGTCTTGTTCACAGATTC+AGG | - | chr4_1:77021012-77021031 | Msa0573760:five_prime_UTR | 45.0% |
| AAAGACTCTGACATGGACAC+CGG | + | chr4_1:77021149-77021168 | None:intergenic | 45.0% | |
| !! | ACATATAGTGGGTAGGGAAC+AGG | - | chr4_1:77021245-77021264 | Msa0573760:five_prime_UTR | 45.0% |
| TACGTGAATGCTTGTTTCCG+CGG | - | chr4_1:77021513-77021532 | Msa0573760:five_prime_UTR | 45.0% | |
| GGTAGTAGTAGGGTGTGTGT+TGG | - | chr4_1:77018539-77018558 | Msa0573760:three_prime_UTR | 50.0% | |
| AGTAGTAGGGTGTGTGTTGG+AGG | - | chr4_1:77018542-77018561 | Msa0573760:three_prime_UTR | 50.0% | |
| GAAGATGGATGAGGAAGAGG+AGG | + | chr4_1:77019551-77019570 | None:intergenic | 50.0% | |
| ! | ATGTTGGGAGGTATGGTAGC+TGG | + | chr4_1:77019617-77019636 | None:intergenic | 50.0% |
| TCTGCAGGTGAAATGTTGGG+AGG | + | chr4_1:77019629-77019648 | None:intergenic | 50.0% | |
| TTTCACCTGCAGAAGCTGCT+TGG | - | chr4_1:77019636-77019655 | Msa0573760:intron | 50.0% | |
| TTCACCTGCAGAAGCTGCTT+GGG | - | chr4_1:77019637-77019656 | Msa0573760:intron | 50.0% | |
| GCAAAACAAGCACGCCATTG+CGG | - | chr4_1:77019691-77019710 | Msa0573760:CDS | 50.0% | |
| !! | GGTTAGTCTAACCACAGCCA+CGG | + | chr4_1:77019771-77019790 | None:intergenic | 50.0% |
| GTGGTTAGACTAACCAGCCA+CGG | - | chr4_1:77019776-77019795 | Msa0573760:CDS | 50.0% | |
| ! | AGAGACACCATGTTTGGTGG+TGG | - | chr4_1:77019800-77019819 | Msa0573760:CDS | 50.0% |
| GAAAGCCTCTTCTTTGGACC+CGG | + | chr4_1:77020941-77020960 | None:intergenic | 50.0% | |
| CAATGGAAGGTGAACTACCG+CGG | + | chr4_1:77021533-77021552 | None:intergenic | 50.0% | |
| AGTAGGGTGTGTGTTGGAGG+AGG | - | chr4_1:77018545-77018564 | Msa0573760:three_prime_UTR | 55.0% | |
| CTGGAACATGGGGTGAAGCA+TGG | + | chr4_1:77019290-77019309 | None:intergenic | 55.0% | |
| TGCTTCACCCCATGTTCCAG+AGG | - | chr4_1:77019290-77019309 | Msa0573760:CDS | 55.0% | |
| TGAACCCAAGCAGCTTCTGC+AGG | + | chr4_1:77019644-77019663 | None:intergenic | 55.0% | |
| CAAACATGGTGTCTCTGCCG+TGG | + | chr4_1:77019796-77019815 | None:intergenic | 55.0% | |
| CACGGCAGAGACACCATGTT+TGG | - | chr4_1:77019794-77019813 | Msa0573760:CDS | 55.0% | |
| GGCAGAGACACCATGTTTGG+TGG | - | chr4_1:77019797-77019816 | Msa0573760:CDS | 55.0% | |
| CTGGTGTCCACCACCAAACA+TGG | + | chr4_1:77019810-77019829 | None:intergenic | 55.0% | |
| TCCGAAGCAACGACCTGAAC+CGG | - | chr4_1:77020919-77020938 | Msa0573760:five_prime_UTR | 55.0% | |
| CTCTTCTTTGGACCCGGTTC+AGG | + | chr4_1:77020935-77020954 | None:intergenic | 55.0% | |
| CTGAACCGGGTCCAAAGAAG+AGG | - | chr4_1:77020933-77020952 | Msa0573760:five_prime_UTR | 55.0% | |
| GGACACACGGTATTGCTCCT+CGG | + | chr4_1:77021128-77021147 | None:intergenic | 55.0% | |
| GAGGAGCAATACCGTGTGTC+CGG | - | chr4_1:77021127-77021146 | Msa0573760:five_prime_UTR | 55.0% | |
| TGACATGGACACCGGACACA+CGG | + | chr4_1:77021141-77021160 | None:intergenic | 55.0% | |
| CGCGGTAGTTCACCTTCCAT+TGG | - | chr4_1:77021531-77021550 | Msa0573760:five_prime_UTR | 55.0% | |
| CATTGCGGTAGCCGCTGCAA+CGG | - | chr4_1:77019706-77019725 | Msa0573760:CDS | 60.0% | |
| AGCAGCTGCAGATGCTGCTG+TGG | - | chr4_1:77019730-77019749 | Msa0573760:CDS | 60.0% | |
| CCCGGTTCAGGTCGTTGCTT+CGG | + | chr4_1:77020923-77020942 | None:intergenic | 60.0% | |
| CCGAAGCAACGACCTGAACC+GGG | - | chr4_1:77020920-77020939 | Msa0573760:five_prime_UTR | 60.0% | |
| GCAGAGGAGGTTGTGATCCG+AGG | - | chr4_1:77021108-77021127 | Msa0573760:five_prime_UTR | 60.0% | |
| CGTTGCAGCGGCTACCGCAA+TGG | + | chr4_1:77019708-77019727 | None:intergenic | 65.0% | |
| TGCAGCTGCTGCCGTTGCAG+CGG | + | chr4_1:77019720-77019739 | None:intergenic | 65.0% | |
| TGCTCAAGCTGCCGTGGCTG+TGG | - | chr4_1:77019757-77019776 | Msa0573760:CDS | 65.0% | |
| CATGGTGTCTCTGCCGTGGC+TGG | + | chr4_1:77019792-77019811 | None:intergenic | 65.0% | |
| GGCAGCTGCTCAAGCTGCCG+TGG | - | chr4_1:77019751-77019770 | Msa0573760:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 77018426 | 77021568 | 77018426 | ID=Msa0573760;Name=Msa0573760 |
| chr4_1 | mRNA | 77018426 | 77021568 | 77018426 | ID=Msa0573760-mRNA-1;Parent=Msa0573760;Name=Msa0573760-mRNA-1;_AED=0.04;_eAED=0.04;_QI=752|1|1|1|0.5|0.4|5|416|446 |
| chr4_1 | exon | 77018426 | 77018486 | 77018426 | ID=Msa0573760-mRNA-1:exon:27076;Parent=Msa0573760-mRNA-1 |
| chr4_1 | exon | 77018516 | 77019575 | 77018516 | ID=Msa0573760-mRNA-1:exon:27075;Parent=Msa0573760-mRNA-1 |
| chr4_1 | exon | 77019664 | 77019879 | 77019664 | ID=Msa0573760-mRNA-1:exon:27074;Parent=Msa0573760-mRNA-1 |
| chr4_1 | exon | 77020120 | 77020599 | 77020120 | ID=Msa0573760-mRNA-1:exon:27073;Parent=Msa0573760-mRNA-1 |
| chr4_1 | exon | 77020877 | 77021568 | 77020877 | ID=Msa0573760-mRNA-1:exon:27072;Parent=Msa0573760-mRNA-1 |
| chr4_1 | five_prime_UTR | 77020877 | 77021568 | 77020877 | ID=Msa0573760-mRNA-1:five_prime_utr;Parent=Msa0573760-mRNA-1 |
| chr4_1 | five_prime_UTR | 77020540 | 77020599 | 77020540 | ID=Msa0573760-mRNA-1:five_prime_utr;Parent=Msa0573760-mRNA-1 |
| chr4_1 | CDS | 77020120 | 77020539 | 77020120 | ID=Msa0573760-mRNA-1:cds;Parent=Msa0573760-mRNA-1 |
| chr4_1 | CDS | 77019664 | 77019879 | 77019664 | ID=Msa0573760-mRNA-1:cds;Parent=Msa0573760-mRNA-1 |
| chr4_1 | CDS | 77018871 | 77019575 | 77018871 | ID=Msa0573760-mRNA-1:cds;Parent=Msa0573760-mRNA-1 |
| chr4_1 | three_prime_UTR | 77018516 | 77018870 | 77018516 | ID=Msa0573760-mRNA-1:three_prime_utr;Parent=Msa0573760-mRNA-1 |
| chr4_1 | three_prime_UTR | 77018426 | 77018486 | 77018426 | ID=Msa0573760-mRNA-1:three_prime_utr;Parent=Msa0573760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
