Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055300 | XP_003622292.1 | 99.189 | 370 | 3 | 0 | 1 | 370 | 1 | 370 | 0.0 | 762 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055300 | sp|Q6DEY3|AB17B_XENTR | 47.529 | 263 | 125 | 6 | 8 | 259 | 22 | 282 | 9.42e-78 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055300 | Q2HUX9 | 99.189 | 370 | 3 | 0 | 1 | 370 | 1 | 370 | 0.0 | 762 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000760 | Msa1055300 | 0.822403 | 2.414047e-53 | -8.615850e-47 |
| Msa0017510 | Msa1055300 | 0.834395 | 3.071940e-56 | -8.615850e-47 |
| Msa0067280 | Msa1055300 | 0.806054 | 9.908064e-50 | -8.615850e-47 |
| Msa0101320 | Msa1055300 | -0.808737 | 2.674142e-50 | -8.615850e-47 |
| Msa0103000 | Msa1055300 | 0.814352 | 1.609601e-51 | -8.615850e-47 |
| Msa0110970 | Msa1055300 | 0.843706 | 1.187782e-58 | -8.615850e-47 |
| Msa0649970 | Msa1055300 | 0.802600 | 5.195455e-49 | -8.615850e-47 |
| Msa0782970 | Msa1055300 | 0.818655 | 1.749984e-52 | -8.615850e-47 |
| Msa0147560 | Msa1055300 | 0.813022 | 3.158301e-51 | -8.615850e-47 |
| Msa0157290 | Msa1055300 | 0.834717 | 2.550749e-56 | -8.615850e-47 |
| Msa0197230 | Msa1055300 | 0.822565 | 2.212632e-53 | -8.615850e-47 |
| Msa0203030 | Msa1055300 | 0.821044 | 4.976853e-53 | -8.615850e-47 |
| Msa0461720 | Msa1055300 | 0.813091 | 3.050115e-51 | -8.615850e-47 |
| Msa0465950 | Msa1055300 | 0.805820 | 1.110014e-49 | -8.615850e-47 |
| Msa1009000 | Msa1055300 | 0.812154 | 4.890918e-51 | -8.615850e-47 |
| Msa1014270 | Msa1055300 | 0.808785 | 2.610649e-50 | -8.615850e-47 |
| Msa1038050 | Msa1055300 | 0.823936 | 1.059052e-53 | -8.615850e-47 |
| Msa1055260 | Msa1055300 | 0.817602 | 3.028348e-52 | -8.615850e-47 |
| Msa1055280 | Msa1055300 | 0.822531 | 2.253825e-53 | -8.615850e-47 |
| Msa1055300 | Msa1073110 | -0.808725 | 2.689934e-50 | -8.615850e-47 |
| Msa1055300 | Msa1080870 | 0.824781 | 6.700086e-54 | -8.615850e-47 |
| Msa1055300 | Msa1098560 | 0.803003 | 4.289030e-49 | -8.615850e-47 |
| Msa1055300 | Msa1104000 | 0.815443 | 9.219430e-52 | -8.615850e-47 |
| Msa1055300 | Msa1119000 | 0.814108 | 1.822665e-51 | -8.615850e-47 |
| Msa1055300 | Msa1124680 | -0.812411 | 4.297335e-51 | -8.615850e-47 |
| Msa1055300 | Msa1127950 | 0.816935 | 4.278732e-52 | -8.615850e-47 |
| Msa1055300 | Msa1139810 | 0.802143 | 6.451002e-49 | -8.615850e-47 |
| Msa1055300 | Msa1173710 | 0.804810 | 1.806940e-49 | -8.615850e-47 |
| Msa1055300 | Msa1204880 | 0.813874 | 2.051666e-51 | -8.615850e-47 |
| Msa1055300 | Msa1217360 | 0.803537 | 3.325187e-49 | -8.615850e-47 |
| Msa1055300 | Msa1222970 | 0.829195 | 5.895273e-55 | -8.615850e-47 |
| Msa1055300 | Msa1267220 | 0.810417 | 1.164933e-50 | -8.615850e-47 |
| Msa1055300 | Msa1271280 | 0.812694 | 3.727349e-51 | -8.615850e-47 |
| Msa1055300 | Msa1351760 | 0.829008 | 6.545516e-55 | -8.615850e-47 |
| Msa1055300 | Msa1367080 | 0.809280 | 2.045617e-50 | -8.615850e-47 |
| Msa1055300 | Msa1374550 | 0.819863 | 9.288208e-53 | -8.615850e-47 |
| Msa1055300 | Msa1380280 | 0.826797 | 2.227379e-54 | -8.615850e-47 |
| Msa1055300 | Msa1420060 | 0.818046 | 2.404262e-52 | -8.615850e-47 |
| Msa1055300 | Msa1420500 | 0.810035 | 1.407964e-50 | -8.615850e-47 |
| Msa1055300 | Msa1421550 | 0.800448 | 1.434706e-48 | -8.615850e-47 |
| Msa0238890 | Msa1055300 | 0.818988 | 1.470742e-52 | -8.615850e-47 |
| Msa0289890 | Msa1055300 | 0.825924 | 3.594117e-54 | -8.615850e-47 |
| Msa0306300 | Msa1055300 | 0.812911 | 3.340028e-51 | -8.615850e-47 |
| Msa0308830 | Msa1055300 | 0.805465 | 1.317889e-49 | -8.615850e-47 |
| Msa0313410 | Msa1055300 | 0.802708 | 4.936045e-49 | -8.615850e-47 |
| Msa0331900 | Msa1055300 | 0.800836 | 1.195505e-48 | -8.615850e-47 |
| Msa0503580 | Msa1055300 | 0.800734 | 1.254222e-48 | -8.615850e-47 |
| Msa0575570 | Msa1055300 | 0.813607 | 2.349256e-51 | -8.615850e-47 |
| Msa0844560 | Msa1055300 | 0.846891 | 1.633473e-59 | -8.615850e-47 |
| Msa0880140 | Msa1055300 | 0.838170 | 3.371179e-57 | -8.615850e-47 |
| Msa0907380 | Msa1055300 | 0.802118 | 6.529282e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055300 | MtrunA17_Chr7g0226551 | 99.189 | 370 | 3 | 0 | 1 | 370 | 1 | 370 | 0.0 | 762 |
| Msa1055300 | MtrunA17_Chr3g0116571 | 76.253 | 379 | 80 | 2 | 1 | 369 | 1 | 379 | 0.0 | 603 |
| Msa1055300 | MtrunA17_Chr7g0220431 | 65.416 | 373 | 105 | 2 | 1 | 364 | 1 | 358 | 9.03e-178 | 498 |
| Msa1055300 | MtrunA17_Chr6g0457861 | 57.337 | 368 | 112 | 4 | 1 | 338 | 1 | 353 | 4.92e-149 | 425 |
| Msa1055300 | MtrunA17_Chr4g0074441 | 63.878 | 263 | 94 | 1 | 1 | 263 | 1 | 262 | 5.50e-127 | 366 |
| Msa1055300 | MtrunA17_Chr5g0410651 | 61.905 | 273 | 99 | 2 | 1 | 268 | 1 | 273 | 4.50e-119 | 350 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055300 | AT5G14390.1 | 76.190 | 378 | 71 | 6 | 1 | 369 | 1 | 368 | 0.0 | 580 |
| Msa1055300 | AT3G01690.1 | 76.757 | 370 | 75 | 4 | 1 | 369 | 1 | 360 | 0.0 | 574 |
| Msa1055300 | AT4G24760.1 | 71.774 | 372 | 93 | 6 | 1 | 369 | 1 | 363 | 0.0 | 541 |
| Msa1055300 | AT3G30380.2 | 63.881 | 371 | 117 | 5 | 1 | 367 | 1 | 358 | 4.07e-171 | 482 |
| Msa1055300 | AT3G30380.1 | 64.578 | 367 | 113 | 5 | 1 | 363 | 1 | 354 | 7.27e-171 | 482 |
| Msa1055300 | AT5G38220.3 | 62.577 | 326 | 108 | 3 | 1 | 314 | 1 | 324 | 3.21e-152 | 432 |
| Msa1055300 | AT5G38220.1 | 62.577 | 326 | 108 | 3 | 1 | 314 | 1 | 324 | 3.21e-152 | 432 |
| Msa1055300 | AT1G66900.1 | 68.773 | 269 | 83 | 1 | 1 | 268 | 1 | 269 | 4.55e-141 | 402 |
| Msa1055300 | AT4G31020.2 | 67.300 | 263 | 86 | 0 | 1 | 263 | 1 | 263 | 2.24e-134 | 385 |
| Msa1055300 | AT4G31020.1 | 67.300 | 263 | 86 | 0 | 1 | 263 | 1 | 263 | 2.24e-134 | 385 |
| Msa1055300 | AT1G13610.1 | 53.581 | 377 | 121 | 8 | 1 | 369 | 1 | 331 | 3.89e-131 | 380 |
| Msa1055300 | AT2G24320.2 | 62.738 | 263 | 97 | 1 | 1 | 263 | 1 | 262 | 1.84e-128 | 370 |
| Msa1055300 | AT2G24320.1 | 62.500 | 256 | 95 | 1 | 8 | 263 | 1 | 255 | 1.51e-124 | 360 |
| Msa1055300 | AT1G32190.1 | 56.159 | 276 | 112 | 1 | 1 | 267 | 1 | 276 | 7.23e-111 | 330 |
| Msa1055300 | AT5G38220.2 | 69.712 | 208 | 61 | 1 | 1 | 208 | 1 | 206 | 4.35e-108 | 317 |
| Msa1055300 | AT1G13610.2 | 50.617 | 243 | 95 | 3 | 115 | 342 | 18 | 250 | 2.00e-77 | 239 |
| Msa1055300 | AT1G32190.2 | 60.390 | 154 | 61 | 0 | 114 | 267 | 38 | 191 | 7.79e-64 | 207 |
Find 108 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCACAGTCCAATACTTTC+TGG | 0.217252 | 7_2:-29332623 | Msa1055300:CDS |
| TCATGGTAACGCTGCTGATC+TGG | 0.228996 | 7_2:-29334479 | Msa1055300:CDS |
| TGTTGCAGGTATGATTATTC+TGG | 0.230487 | 7_2:-29332926 | Msa1055300:intron |
| CTTCAATTGTTTAATCACTA+TGG | 0.238111 | 7_2:-29331102 | Msa1055300:three_prime_UTR |
| GAAGAGGCTCGTTGTTTCTA+TGG | 0.272125 | 7_2:+29334954 | None:intergenic |
| TGACAGATAGTTATATTTAA+AGG | 0.285318 | 7_2:-29331075 | Msa1055300:three_prime_UTR |
| GTCCAATACTTTCTGGCTTA+AGG | 0.292115 | 7_2:-29332616 | Msa1055300:CDS |
| AACCAGTATGAACGCTTTAC+TGG | 0.303616 | 7_2:+29332584 | None:intergenic |
| TGAGTGAAGGAGTGCTTTAT+TGG | 0.304688 | 7_2:+29335021 | None:intergenic |
| CAAGAAGATATAATCCTTTA+CGG | 0.308045 | 7_2:-29332713 | Msa1055300:CDS |
| GTTGATCATCAATTAGAAAA+AGG | 0.324209 | 7_2:-29331433 | Msa1055300:CDS |
| TTAACACCCATGAAAGAAAA+AGG | 0.327173 | 7_2:-29335114 | None:intergenic |
| TTGACCGACTCGACAGAATA+AGG | 0.327499 | 7_2:-29331399 | Msa1055300:CDS |
| TCCAATACTTTCTGGCTTAA+GGG | 0.333040 | 7_2:-29332615 | Msa1055300:CDS |
| CACTATTGGCATTGAAGAAA+AGG | 0.360569 | 7_2:-29331278 | Msa1055300:three_prime_UTR |
| CTATGGAATGGATTATGTTA+TGG | 0.363829 | 7_2:+29334971 | None:intergenic |
| ATACTGGTTTGACATATATA+AGG | 0.371998 | 7_2:-29332570 | Msa1055300:intron |
| AGTTTGTATGATGGTGGGTT+TGG | 0.380408 | 7_2:+29334652 | None:intergenic |
| TTCTGACACAACCTGTCAAC+TGG | 0.383531 | 7_2:+29330997 | None:intergenic |
| ATTAGAATGCACTGAACAAT+AGG | 0.388288 | 7_2:+29331035 | None:intergenic |
| GTTCCCACGGTAAGCAACTC+TGG | 0.399048 | 7_2:-29331831 | Msa1055300:CDS |
| CTAATCAAAGATGATTTAAC+AGG | 0.400554 | 7_2:-29334631 | Msa1055300:CDS |
| GGTTTGTCTGTGCTCTTCCT+TGG | 0.400736 | 7_2:+29331580 | None:intergenic |
| AGCTCTTTCCCGAGTACATA+AGG | 0.413590 | 7_2:-29331747 | Msa1055300:CDS |
| GGCTCGTTGTTTCTATGGAA+TGG | 0.416185 | 7_2:+29334959 | None:intergenic |
| ATTAGACCACTTTCAACCCT+TGG | 0.420447 | 7_2:+29335048 | None:intergenic |
| AAAAGGTTTGATGTTACAAT+GGG | 0.420826 | 7_2:-29331261 | Msa1055300:three_prime_UTR |
| CTTCAGATGCCTTATGTACT+CGG | 0.422463 | 7_2:+29331738 | None:intergenic |
| TGTTGGAAGTGGCCCAACTT+TGG | 0.424922 | 7_2:-29332684 | Msa1055300:CDS |
| AAGTGTCTCGAAGAAAGTTT+TGG | 0.425013 | 7_2:-29332743 | Msa1055300:CDS |
| GTTGCAGGTATGATTATTCT+GGG | 0.427239 | 7_2:-29332925 | Msa1055300:intron |
| TTGTATGATGGTGGGTTTGG+TGG | 0.435014 | 7_2:+29334655 | None:intergenic |
| CCACTTGCGTGTTAATCTCA+TGG | 0.442917 | 7_2:-29334422 | Msa1055300:CDS |
| TGTGTAGTTTGATACACTAT+TGG | 0.454991 | 7_2:-29331292 | Msa1055300:three_prime_UTR |
| TCAACTCTTCTTTACTCTCA+TGG | 0.456071 | 7_2:-29334496 | Msa1055300:CDS |
| TTGATTAGTTTGTATGATGG+TGG | 0.458180 | 7_2:+29334646 | None:intergenic |
| AAAACATCCGTACTCTTTCG+AGG | 0.460409 | 7_2:+29331640 | None:intergenic |
| CTTACATGAACTATGAGAAC+TGG | 0.461132 | 7_2:+29332434 | None:intergenic |
| ATCCAGTAAAGCGTTCATAC+TGG | 0.462552 | 7_2:-29332586 | Msa1055300:CDS |
| CATGGTAACGCTGCTGATCT+GGG | 0.462664 | 7_2:-29334478 | Msa1055300:CDS |
| CCTGTCAACTGGTTTGTAGT+TGG | 0.464427 | 7_2:+29331008 | None:intergenic |
| TATATTCGTGCACACGGGAT+TGG | 0.470458 | 7_2:-29331349 | Msa1055300:three_prime_UTR |
| GAAAAGGTTTGATGTTACAA+TGG | 0.480207 | 7_2:-29331262 | Msa1055300:three_prime_UTR |
| TCTTTCGAGGCTGCTCAAAC+TGG | 0.480744 | 7_2:+29331653 | None:intergenic |
| CACTTGCGTGTTAATCTCAT+GGG | 0.483122 | 7_2:-29334421 | Msa1055300:CDS |
| TGATTAGTTTGTATGATGGT+GGG | 0.484762 | 7_2:+29334647 | None:intergenic |
| TGTTTATTGCTTTGAGAGTG+AGG | 0.486253 | 7_2:+29334995 | None:intergenic |
| TTTATGTTTATGTGATGGGT+GGG | 0.490044 | 7_2:-29334714 | Msa1055300:intron |
| TTCAATTGTTTAATCACTAT+GGG | 0.491491 | 7_2:-29331101 | Msa1055300:three_prime_UTR |
| TCTGGGTACGGACAGTCGTC+AGG | 0.495232 | 7_2:-29332908 | Msa1055300:CDS |
| ATTGTTTATGTTTATGTGAT+GGG | 0.495708 | 7_2:-29334718 | Msa1055300:intron |
| CAAACTGGTCTGTACTCCTT+CGG | 0.496493 | 7_2:+29331668 | None:intergenic |
| TTGAAGAAGAGAAGAAGATG+AGG | 0.496715 | 7_2:+29334881 | None:intergenic |
| ATCCTTTACGGACAATCTGT+TGG | 0.497874 | 7_2:-29332701 | Msa1055300:CDS |
| ACCCTTAAGCCAGAAAGTAT+TGG | 0.501968 | 7_2:+29332614 | None:intergenic |
| GAGAGTGAGGGAGTGAGTGA+AGG | 0.512346 | 7_2:+29335008 | None:intergenic |
| GTTTATGTTTATGTGATGGG+TGG | 0.518014 | 7_2:-29334715 | Msa1055300:intron |
| GTTTATTGCTTTGAGAGTGA+GGG | 0.518471 | 7_2:+29334996 | None:intergenic |
| TACGGACAATCTGTTGGAAG+TGG | 0.524349 | 7_2:-29332695 | Msa1055300:CDS |
| TAGCTGCAAGATCCAAAGTT+GGG | 0.525550 | 7_2:+29332672 | None:intergenic |
| TTCAGATGCCTTATGTACTC+GGG | 0.527427 | 7_2:+29331739 | None:intergenic |
| CATTGTTTATGTTTATGTGA+TGG | 0.527883 | 7_2:-29334719 | Msa1055300:intron |
| TCTTTGATTAGTTTGTATGA+TGG | 0.531059 | 7_2:+29334643 | None:intergenic |
| CAACTTTGGATCTTGCAGCT+AGG | 0.531402 | 7_2:-29332670 | Msa1055300:CDS |
| GAATATGTATTCTGCTCACT+TGG | 0.534786 | 7_2:+29332785 | None:intergenic |
| AGGTATGATTATTCTGGGTA+CGG | 0.542672 | 7_2:-29332920 | Msa1055300:CDS |
| CTAGCTGCAAGATCCAAAGT+TGG | 0.543864 | 7_2:+29332671 | None:intergenic |
| AGAAGAGTTGAAGTAGCCAT+TGG | 0.544121 | 7_2:+29334508 | None:intergenic |
| TTGATCATAAAGAGAGATCT+CGG | 0.544423 | 7_2:-29331492 | Msa1055300:CDS |
| AAAACAACAGCTCGTAATTG+AGG | 0.546917 | 7_2:+29332644 | None:intergenic |
| GGGTGGGGTAACATCATCAA+TGG | 0.550605 | 7_2:-29334698 | Msa1055300:CDS |
| TTATGTTTATGTGATGGGTG+GGG | 0.550727 | 7_2:-29334713 | Msa1055300:intron |
| TGGAAATGGAAAGGGAAAGA+AGG | 0.556785 | 7_2:+29334920 | None:intergenic |
| TTCCAACAGATTGTCCGTAA+AGG | 0.559246 | 7_2:+29332699 | None:intergenic |
| TGAGCAGCCTCGAAAGAGTA+CGG | 0.561129 | 7_2:-29331647 | Msa1055300:CDS |
| TACGAACCACTGTGGCTCAA+AGG | 0.565306 | 7_2:-29331790 | Msa1055300:CDS |
| TGTTTATGTTCGTCATCCAA+TGG | 0.571569 | 7_2:-29334524 | Msa1055300:CDS |
| TTCCCAGAGTTGCTTACCGT+GGG | 0.572357 | 7_2:+29331828 | None:intergenic |
| GAGCACAGACAAACCAGAGA+AGG | 0.574334 | 7_2:-29331572 | Msa1055300:CDS |
| ACAATAGCATGCGAGATCCA+AGG | 0.576177 | 7_2:-29335065 | Msa1055300:five_prime_UTR |
| CCAACTACAAACCAGTTGAC+AGG | 0.576384 | 7_2:-29331008 | Msa1055300:three_prime_UTR |
| CAATAGCATGCGAGATCCAA+GGG | 0.576869 | 7_2:-29335064 | Msa1055300:five_prime_UTR |
| GAATATAACTTCAATACAAG+AGG | 0.577545 | 7_2:+29331365 | None:intergenic |
| AACTCGTCTTCTAGTAATGG+TGG | 0.577907 | 7_2:-29331544 | Msa1055300:CDS |
| TTCCCACGGTAAGCAACTCT+GGG | 0.578420 | 7_2:-29331830 | Msa1055300:CDS |
| TAGTAATGGTGGTGATATGT+TGG | 0.589614 | 7_2:-29331533 | Msa1055300:CDS |
| AATTGAGTTAGATCTTGTTG+TGG | 0.589636 | 7_2:+29334850 | None:intergenic |
| ATGAAACTTTCGACGCGTCG+AGG | 0.590434 | 7_2:-29334562 | Msa1055300:CDS |
| TGAAGTTATATTCGTGCACA+CGG | 0.590534 | 7_2:-29331355 | Msa1055300:three_prime_UTR |
| GAAGGTGATAGTGAAAGAAG+AGG | 0.594237 | 7_2:+29334938 | None:intergenic |
| GAAGTTGTAGATTGTTCCCA+CGG | 0.597143 | 7_2:-29331844 | Msa1055300:CDS |
| CGAGATCCAAGGGTTGAAAG+TGG | 0.610263 | 7_2:-29335054 | Msa1055300:five_prime_UTR |
| CCATGAGATTAACACGCAAG+TGG | 0.613463 | 7_2:+29334422 | None:intergenic |
| CGCAAAGATACAGTTTCCGA+AGG | 0.613831 | 7_2:-29331684 | Msa1055300:CDS |
| CGGAAACTGTATCTTTGCGA+CGG | 0.615327 | 7_2:+29331688 | None:intergenic |
| GAAGTTATATTCGTGCACAC+GGG | 0.626240 | 7_2:-29331354 | Msa1055300:three_prime_UTR |
| GTTCCCAGAGTTGCTTACCG+TGG | 0.632356 | 7_2:+29331827 | None:intergenic |
| GTACGGACAGTCGTCAGGAA+AGG | 0.635204 | 7_2:-29332903 | Msa1055300:intron |
| CAGTCCTTATTCTGTCGAGT+CGG | 0.637149 | 7_2:+29331395 | None:intergenic |
| CTGATCGTAGAGAAAAGCCA+AGG | 0.642341 | 7_2:-29331597 | Msa1055300:CDS |
| CGACTCGACAGAATAAGGAC+TGG | 0.649791 | 7_2:-29331394 | Msa1055300:CDS |
| AGAACTGGACAATTAACTAG+TGG | 0.652581 | 7_2:+29332449 | None:intergenic |
| GAATACATATTCAGATATCG+AGG | 0.657030 | 7_2:-29332774 | Msa1055300:CDS |
| TTACCTCCTTTGAGCCACAG+TGG | 0.679149 | 7_2:+29331784 | None:intergenic |
| GAACCACTGTGGCTCAAAGG+AGG | 0.681241 | 7_2:-29331787 | Msa1055300:CDS |
| ACTTGCGTGTTAATCTCATG+GGG | 0.715195 | 7_2:-29334420 | Msa1055300:intron |
| GAAAGAGCTCTAAATCGCAG+TGG | 0.717582 | 7_2:+29331761 | None:intergenic |
| AAGAGAAATACGAACCACTG+TGG | 0.749682 | 7_2:-29331798 | Msa1055300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTAAAATTTTCTTTTTT+TGG | - | chr7_2:29331801-29331820 | Msa1055300:CDS | 10.0% |
| !!! | TATATAATATTCTTCTTTTT+TGG | - | chr7_2:29331855-29331874 | Msa1055300:CDS | 10.0% |
| !! | TATAAAAATAACTTATACAT+AGG | + | chr7_2:29332281-29332300 | None:intergenic | 10.0% |
| !!! | AAAACTAAAACATTTTTTTT+TGG | - | chr7_2:29332697-29332716 | Msa1055300:CDS | 10.0% |
| !!! | AAACTAAAACATTTTTTTTT+GGG | - | chr7_2:29332698-29332717 | Msa1055300:CDS | 10.0% |
| !!! | TTTTTAAAAGAGAAAAATAA+AGG | + | chr7_2:29334957-29334976 | None:intergenic | 10.0% |
| !!! | AATTTTCTTTTTTTGGTTTT+TGG | - | chr7_2:29331808-29331827 | Msa1055300:CDS | 15.0% |
| !! | CATAAAATAAATAAGTTGTT+TGG | + | chr7_2:29332078-29332097 | None:intergenic | 15.0% |
| !!! | TTCATTTCATTTTGAATATT+TGG | - | chr7_2:29333899-29333918 | Msa1055300:intron | 15.0% |
| !!! | TCATTTCATTTTGAATATTT+GGG | - | chr7_2:29333900-29333919 | Msa1055300:intron | 15.0% |
| !! | ATTGTTTATGTTTATGTGAT+GGG | - | chr7_2:29331380-29331399 | Msa1055300:exon | 20.0% |
| !!! | GTTTGGAATTTGAAATTTAT+AGG | - | chr7_2:29331766-29331785 | Msa1055300:CDS | 20.0% |
| !!! | TTGAAAATTTTGCTTCATTT+TGG | - | chr7_2:29332129-29332148 | Msa1055300:intron | 20.0% |
| !! | CAATACTTCATTACAAAAAT+CGG | + | chr7_2:29332752-29332771 | None:intergenic | 20.0% |
| !!! | TAATGAAGTATTGAATTTGA+AGG | - | chr7_2:29332759-29332778 | Msa1055300:CDS | 20.0% |
| !!! | AGTCAATATTTTTGTTGTAA+CGG | - | chr7_2:29334185-29334204 | Msa1055300:intron | 20.0% |
| !! | AATGACATAAAAGATATAGT+TGG | + | chr7_2:29334217-29334236 | None:intergenic | 20.0% |
| !!! | ATATCTTTTATGTCATTTGT+AGG | - | chr7_2:29334220-29334239 | Msa1055300:intron | 20.0% |
| !!! | TATCTTTTATGTCATTTGTA+GGG | - | chr7_2:29334221-29334240 | Msa1055300:intron | 20.0% |
| !! | TTCAATTGTTTAATCACTAT+GGG | - | chr7_2:29334997-29335016 | Msa1055300:five_prime_UTR | 20.0% |
| !! | TGACAGATAGTTATATTTAA+AGG | - | chr7_2:29335023-29335042 | Msa1055300:five_prime_UTR | 20.0% |
| !!! | TTTTATGATGGAAATGGAAA+GGG | + | chr7_2:29331189-29331208 | None:intergenic | 25.0% |
| !!! | TTTTTATGATGGAAATGGAA+AGG | + | chr7_2:29331190-29331209 | None:intergenic | 25.0% |
| !!! | ACTACTTTTTATGATGGAAA+TGG | + | chr7_2:29331195-29331214 | None:intergenic | 25.0% |
| ! | CATTGTTTATGTTTATGTGA+TGG | - | chr7_2:29331379-29331398 | Msa1055300:exon | 25.0% |
| !!! | TCTTTGATTAGTTTGTATGA+TGG | + | chr7_2:29331458-29331477 | None:intergenic | 25.0% |
| ! | CTAATCAAAGATGATTTAAC+AGG | - | chr7_2:29331467-29331486 | Msa1055300:CDS | 25.0% |
| !!! | TATCTCTTTCAAGTAGTTTT+TGG | - | chr7_2:29331717-29331736 | Msa1055300:CDS | 25.0% |
| !!! | TTTTTTTGTTGTTGTGCTTT+TGG | - | chr7_2:29331743-29331762 | Msa1055300:CDS | 25.0% |
| !!! | TTTTTTGTTGTTGTGCTTTT+GGG | - | chr7_2:29331744-29331763 | Msa1055300:CDS | 25.0% |
| !!! | TTTTTTTCCATAAGCTATCA+TGG | - | chr7_2:29331954-29331973 | Msa1055300:intron | 25.0% |
| !!! | TTTTGCTTCATTTTGGTTTT+TGG | - | chr7_2:29332136-29332155 | Msa1055300:intron | 25.0% |
| !!! | TCATTTTGGTTTTTGGTTTT+TGG | - | chr7_2:29332143-29332162 | Msa1055300:intron | 25.0% |
| !!! | TGATTTGGAATTTTGAGAAA+TGG | - | chr7_2:29332211-29332230 | Msa1055300:intron | 25.0% |
| ! | GCTTATATATTGACATAAAC+AGG | + | chr7_2:29332657-29332676 | None:intergenic | 25.0% |
| !!! | AAGTATTGAATTTGAAGGTA+TGG | - | chr7_2:29332764-29332783 | Msa1055300:CDS | 25.0% |
| ! | CAAGAAGATATAATCCTTTA+CGG | - | chr7_2:29333385-29333404 | Msa1055300:intron | 25.0% |
| !!! | ATACTGGTTTGACATATATA+AGG | - | chr7_2:29333528-29333547 | Msa1055300:intron | 25.0% |
| ! | CAAACATGTTTATTATGCTA+TGG | - | chr7_2:29333694-29333713 | Msa1055300:intron | 25.0% |
| ! | AAAATCAATAGAAAGGAAAC+TGG | + | chr7_2:29333856-29333875 | None:intergenic | 25.0% |
| !!! | TCCTTTCTATTGATTTTCTT+TGG | - | chr7_2:29333859-29333878 | Msa1055300:intron | 25.0% |
| ! | AGTCAAAAAAATACGAATCT+TGG | + | chr7_2:29333955-29333974 | None:intergenic | 25.0% |
| !! | AGAAGAGTCTAAAATATTGT+AGG | + | chr7_2:29334059-29334078 | None:intergenic | 25.0% |
| ! | GTTGATCATCAATTAGAAAA+AGG | - | chr7_2:29334665-29334684 | Msa1055300:CDS | 25.0% |
| ! | ATCATCAATTAGAAAAAGGA+AGG | - | chr7_2:29334669-29334688 | Msa1055300:CDS | 25.0% |
| ! | GAATATAACTTCAATACAAG+AGG | + | chr7_2:29334736-29334755 | None:intergenic | 25.0% |
| ! | AAAAGGTTTGATGTTACAAT+GGG | - | chr7_2:29334837-29334856 | Msa1055300:five_prime_UTR | 25.0% |
| ! | CTTCAATTGTTTAATCACTA+TGG | - | chr7_2:29334996-29335015 | Msa1055300:five_prime_UTR | 25.0% |
| !! | CTATGGAATGGATTATGTTA+TGG | + | chr7_2:29331130-29331149 | None:intergenic | 30.0% |
| !!! | GAGGAAACTACTTTTTATGA+TGG | + | chr7_2:29331201-29331220 | None:intergenic | 30.0% |
| AATTGAGTTAGATCTTGTTG+TGG | + | chr7_2:29331251-29331270 | None:intergenic | 30.0% | |
| !! | TTTATGTTTATGTGATGGGT+GGG | - | chr7_2:29331384-29331403 | Msa1055300:exon | 30.0% |
| !! | TGATTAGTTTGTATGATGGT+GGG | + | chr7_2:29331454-29331473 | None:intergenic | 30.0% |
| !! | TTGATTAGTTTGTATGATGG+TGG | + | chr7_2:29331455-29331474 | None:intergenic | 30.0% |
| ! | TCATAATCTCAACGTTTTCA+CGG | + | chr7_2:29331520-29331539 | None:intergenic | 30.0% |
| !!! | TGGTTTTTGGTTTTTGGTTT+CGG | - | chr7_2:29332149-29332168 | Msa1055300:intron | 30.0% |
| ! | TACTGTGTTTTGTAAGTGAT+TGG | - | chr7_2:29332235-29332254 | Msa1055300:intron | 30.0% |
| ACCTGAACAAAACTAGAAAA+TGG | - | chr7_2:29332433-29332452 | Msa1055300:intron | 30.0% | |
| CCTGAACAAAACTAGAAAAT+GGG | - | chr7_2:29332434-29332453 | Msa1055300:intron | 30.0% | |
| CTGAACAAAACTAGAAAATG+GGG | - | chr7_2:29332435-29332454 | Msa1055300:intron | 30.0% | |
| ATTGTTCTCATAAGCTATTG+TGG | - | chr7_2:29332544-29332563 | Msa1055300:intron | 30.0% | |
| CATTGTTTGAATTGTGTTGT+TGG | - | chr7_2:29332803-29332822 | Msa1055300:intron | 30.0% | |
| ! | AATTGTGTTGTTGGATTTCA+TGG | - | chr7_2:29332812-29332831 | Msa1055300:intron | 30.0% |
| !!! | TGGTATTGATGCTATTTTCA+AGG | - | chr7_2:29332838-29332857 | Msa1055300:intron | 30.0% |
| !! | GCTAAGTTATAATTTGTTGC+AGG | - | chr7_2:29333158-29333177 | Msa1055300:intron | 30.0% |
| GAATACATATTCAGATATCG+AGG | - | chr7_2:29333324-29333343 | Msa1055300:intron | 30.0% | |
| TCTCATTAGGTTAAGGAATT+AGG | + | chr7_2:29333591-29333610 | None:intergenic | 30.0% | |
| ! | TTTTGCATAGACATAACTTC+TGG | - | chr7_2:29333740-29333759 | Msa1055300:intron | 30.0% |
| !!! | TTTTTTTCTTTTGACACCCT+TGG | - | chr7_2:29333829-29333848 | Msa1055300:intron | 30.0% |
| GCCAAAGAAAATCAATAGAA+AGG | + | chr7_2:29333863-29333882 | None:intergenic | 30.0% | |
| ! | GCAAACAAAAAGTGTAACAA+AGG | + | chr7_2:29334090-29334109 | None:intergenic | 30.0% |
| !!! | CATTTCACTTGTATCGATTT+TGG | + | chr7_2:29334125-29334144 | None:intergenic | 30.0% |
| AAAAACTCGTCTTCTAGTAA+TGG | - | chr7_2:29334551-29334570 | Msa1055300:CDS | 30.0% | |
| TTGATCATAAAGAGAGATCT+CGG | - | chr7_2:29334606-29334625 | Msa1055300:CDS | 30.0% | |
| TGTGTAGTTTGATACACTAT+TGG | - | chr7_2:29334806-29334825 | Msa1055300:five_prime_UTR | 30.0% | |
| GAAAAGGTTTGATGTTACAA+TGG | - | chr7_2:29334836-29334855 | Msa1055300:five_prime_UTR | 30.0% | |
| ! | TTTTGCTGAAAACATAATGC+TGG | - | chr7_2:29334899-29334918 | Msa1055300:five_prime_UTR | 30.0% |
| ATTAGAATGCACTGAACAAT+AGG | + | chr7_2:29335066-29335085 | None:intergenic | 30.0% | |
| !! | GTTTATTGCTTTGAGAGTGA+GGG | + | chr7_2:29331105-29331124 | None:intergenic | 35.0% |
| !! | TGTTTATTGCTTTGAGAGTG+AGG | + | chr7_2:29331106-29331125 | None:intergenic | 35.0% |
| TTGAAGAAGAGAAGAAGATG+AGG | + | chr7_2:29331220-29331239 | None:intergenic | 35.0% | |
| ! | GTTTATGTTTATGTGATGGG+TGG | - | chr7_2:29331383-29331402 | Msa1055300:exon | 35.0% |
| !! | TTATGTTTATGTGATGGGTG+GGG | - | chr7_2:29331385-29331404 | Msa1055300:exon | 35.0% |
| TGTTTATGTTCGTCATCCAA+TGG | - | chr7_2:29331574-29331593 | Msa1055300:CDS | 35.0% | |
| TCAACTCTTCTTTACTCTCA+TGG | - | chr7_2:29331602-29331621 | Msa1055300:CDS | 35.0% | |
| !!! | GGTTTTTGGTTTTTGGTTTC+GGG | - | chr7_2:29332150-29332169 | Msa1055300:intron | 35.0% |
| ATTGTTCTTGTAAGCTATCG+TGG | - | chr7_2:29332344-29332363 | Msa1055300:intron | 35.0% | |
| !!! | CCCATTTTCTAGTTTTGTTC+AGG | + | chr7_2:29332437-29332456 | None:intergenic | 35.0% |
| ! | AAACAGGTCTAAGACTGTTT+GGG | + | chr7_2:29332641-29332660 | None:intergenic | 35.0% |
| ! | TAAACAGGTCTAAGACTGTT+TGG | + | chr7_2:29332642-29332661 | None:intergenic | 35.0% |
| TTCATTACAAAAATCGGACG+TGG | + | chr7_2:29332746-29332765 | None:intergenic | 35.0% | |
| GTTGTTGGATTTCATGGAAT+TGG | - | chr7_2:29332818-29332837 | Msa1055300:intron | 35.0% | |
| ATGTGTCGTGAACATAAACT+TGG | + | chr7_2:29332959-29332978 | None:intergenic | 35.0% | |
| CACATTAATAACCAGACAAG+AGG | - | chr7_2:29332974-29332993 | Msa1055300:intron | 35.0% | |
| ! | CCAGAAATTTTCATCACGAA+GGG | + | chr7_2:29333046-29333065 | None:intergenic | 35.0% |
| ! | TCCAGAAATTTTCATCACGA+AGG | + | chr7_2:29333047-29333066 | None:intergenic | 35.0% |
| TGTTGCAGGTATGATTATTC+TGG | - | chr7_2:29333172-29333191 | Msa1055300:intron | 35.0% | |
| GTTGCAGGTATGATTATTCT+GGG | - | chr7_2:29333173-29333192 | Msa1055300:intron | 35.0% | |
| AGGTATGATTATTCTGGGTA+CGG | - | chr7_2:29333178-29333197 | Msa1055300:intron | 35.0% | |
| TCGCGCATACATAAATTTGA+TGG | - | chr7_2:29333263-29333282 | Msa1055300:intron | 35.0% | |
| GAATATGTATTCTGCTCACT+TGG | + | chr7_2:29333316-29333335 | None:intergenic | 35.0% | |
| ! | AAGTGTCTCGAAGAAAGTTT+TGG | - | chr7_2:29333355-29333374 | Msa1055300:intron | 35.0% |
| AAAACAACAGCTCGTAATTG+AGG | + | chr7_2:29333457-29333476 | None:intergenic | 35.0% | |
| !! | TCCAATACTTTCTGGCTTAA+GGG | - | chr7_2:29333483-29333502 | Msa1055300:intron | 35.0% |
| TATTCTGCATATACGAACAC+AGG | + | chr7_2:29333618-29333637 | None:intergenic | 35.0% | |
| AGAACTGGACAATTAACTAG+TGG | + | chr7_2:29333652-29333671 | None:intergenic | 35.0% | |
| CTTACATGAACTATGAGAAC+TGG | + | chr7_2:29333667-29333686 | None:intergenic | 35.0% | |
| ! | CAAAAAGTGTAACAAAGGAC+AGG | + | chr7_2:29334085-29334104 | None:intergenic | 35.0% |
| GTGATAGCTTGAACTTCAAA+TGG | + | chr7_2:29334155-29334174 | None:intergenic | 35.0% | |
| ! | TAGTAATGGTGGTGATATGT+TGG | - | chr7_2:29334565-29334584 | Msa1055300:CDS | 35.0% |
| TGAAGTTATATTCGTGCACA+CGG | - | chr7_2:29334743-29334762 | Msa1055300:intron | 35.0% | |
| ! | CACTATTGGCATTGAAGAAA+AGG | - | chr7_2:29334820-29334839 | Msa1055300:five_prime_UTR | 35.0% |
| ATTAGACCACTTTCAACCCT+TGG | + | chr7_2:29331053-29331072 | None:intergenic | 40.0% | |
| !! | TGAGTGAAGGAGTGCTTTAT+TGG | + | chr7_2:29331080-29331099 | None:intergenic | 40.0% |
| ! | GAAGGTGATAGTGAAAGAAG+AGG | + | chr7_2:29331163-29331182 | None:intergenic | 40.0% |
| TGGAAATGGAAAGGGAAAGA+AGG | + | chr7_2:29331181-29331200 | None:intergenic | 40.0% | |
| ! | TTTTGTGAAGTGTGTGAAGG+TGG | + | chr7_2:29331276-29331295 | None:intergenic | 40.0% |
| ! | GTGTTTTGTGAAGTGTGTGA+AGG | + | chr7_2:29331279-29331298 | None:intergenic | 40.0% |
| !! | AGTTTGTATGATGGTGGGTT+TGG | + | chr7_2:29331449-29331468 | None:intergenic | 40.0% |
| AGAAGAGTTGAAGTAGCCAT+TGG | + | chr7_2:29331593-29331612 | None:intergenic | 40.0% | |
| CACTTGCGTGTTAATCTCAT+GGG | - | chr7_2:29331677-29331696 | Msa1055300:CDS | 40.0% | |
| ACTTGCGTGTTAATCTCATG+GGG | - | chr7_2:29331678-29331697 | Msa1055300:CDS | 40.0% | |
| !!! | TGTTGTTGTGCTTTTGGGTT+TGG | - | chr7_2:29331749-29331768 | Msa1055300:CDS | 40.0% |
| GTACTCACCATGATAGCTTA+TGG | + | chr7_2:29331964-29331983 | None:intergenic | 40.0% | |
| CATGGTGAGTACAGAGTTTA+TGG | - | chr7_2:29331972-29331991 | Msa1055300:intron | 40.0% | |
| TTTGCTTAGAGTGCGAAATG+AGG | - | chr7_2:29332179-29332198 | Msa1055300:intron | 40.0% | |
| AGTGCGAAATGAGGATTTGT+GGG | - | chr7_2:29332188-29332207 | Msa1055300:intron | 40.0% | |
| ATGAGGATTTGTGGGTGATT+TGG | - | chr7_2:29332196-29332215 | Msa1055300:intron | 40.0% | |
| TTGGACAGACGACAAAATTG+TGG | + | chr7_2:29332940-29332959 | None:intergenic | 40.0% | |
| CCCTTCGTGATGAAAATTTC+TGG | - | chr7_2:29333043-29333062 | Msa1055300:intron | 40.0% | |
| TGCATTGAGCTCAACTTCAA+AGG | - | chr7_2:29333110-29333129 | Msa1055300:intron | 40.0% | |
| ATCCTTTACGGACAATCTGT+TGG | - | chr7_2:29333397-29333416 | Msa1055300:intron | 40.0% | |
| TTCCAACAGATTGTCCGTAA+AGG | + | chr7_2:29333402-29333421 | None:intergenic | 40.0% | |
| TAGCTGCAAGATCCAAAGTT+GGG | + | chr7_2:29333429-29333448 | None:intergenic | 40.0% | |
| TTGCACAGTCCAATACTTTC+TGG | - | chr7_2:29333475-29333494 | Msa1055300:intron | 40.0% | |
| !! | GTCCAATACTTTCTGGCTTA+AGG | - | chr7_2:29333482-29333501 | Msa1055300:intron | 40.0% |
| ! | ACCCTTAAGCCAGAAAGTAT+TGG | + | chr7_2:29333487-29333506 | None:intergenic | 40.0% |
| ! | ATCCAGTAAAGCGTTCATAC+TGG | - | chr7_2:29333512-29333531 | Msa1055300:intron | 40.0% |
| AACCAGTATGAACGCTTTAC+TGG | + | chr7_2:29333517-29333536 | None:intergenic | 40.0% | |
| !! | AGGAGCATCTCATTAGGTTA+AGG | + | chr7_2:29333598-29333617 | None:intergenic | 40.0% |
| TAGAAAGGAAACTGGACCAA+GGG | + | chr7_2:29333848-29333867 | None:intergenic | 40.0% | |
| ATAGAAAGGAAACTGGACCA+AGG | + | chr7_2:29333849-29333868 | None:intergenic | 40.0% | |
| GAAGTTGTAGATTGTTCCCA+CGG | - | chr7_2:29334254-29334273 | Msa1055300:intron | 40.0% | |
| AAGAGAAATACGAACCACTG+TGG | - | chr7_2:29334300-29334319 | Msa1055300:intron | 40.0% | |
| TTCAGATGCCTTATGTACTC+GGG | + | chr7_2:29334362-29334381 | None:intergenic | 40.0% | |
| CTTCAGATGCCTTATGTACT+CGG | + | chr7_2:29334363-29334382 | None:intergenic | 40.0% | |
| AAAACATCCGTACTCTTTCG+AGG | + | chr7_2:29334461-29334480 | None:intergenic | 40.0% | |
| !!! | GACGAGTTTTTTACCTTCTC+TGG | + | chr7_2:29334542-29334561 | None:intergenic | 40.0% |
| AACTCGTCTTCTAGTAATGG+TGG | - | chr7_2:29334554-29334573 | Msa1055300:CDS | 40.0% | |
| GAAGTTATATTCGTGCACAC+GGG | - | chr7_2:29334744-29334763 | Msa1055300:intron | 40.0% | |
| ACAATAGCATGCGAGATCCA+AGG | - | chr7_2:29331033-29331052 | Msa1055300:three_prime_UTR | 45.0% | |
| CAATAGCATGCGAGATCCAA+GGG | - | chr7_2:29331034-29331053 | Msa1055300:three_prime_UTR | 45.0% | |
| !! | GGCTCGTTGTTTCTATGGAA+TGG | + | chr7_2:29331142-29331161 | None:intergenic | 45.0% |
| !! | GAAGAGGCTCGTTGTTTCTA+TGG | + | chr7_2:29331147-29331166 | None:intergenic | 45.0% |
| !! | TTGTATGATGGTGGGTTTGG+TGG | + | chr7_2:29331446-29331465 | None:intergenic | 45.0% |
| ! | ACGTTTTCACGGTGAGGAAA+TGG | + | chr7_2:29331509-29331528 | None:intergenic | 45.0% |
| ! | ATCTCAACGTTTTCACGGTG+AGG | + | chr7_2:29331515-29331534 | None:intergenic | 45.0% |
| CCATGAGATTAACACGCAAG+TGG | + | chr7_2:29331679-29331698 | None:intergenic | 45.0% | |
| CCACTTGCGTGTTAATCTCA+TGG | - | chr7_2:29331676-29331695 | Msa1055300:CDS | 45.0% | |
| CAAAACGAGTGAGACTGCTT+GGG | + | chr7_2:29332027-29332046 | None:intergenic | 45.0% | |
| GAGTGCGAAATGAGGATTTG+TGG | - | chr7_2:29332187-29332206 | Msa1055300:intron | 45.0% | |
| GTTCTTGTAAGCTATCGTGG+AGG | - | chr7_2:29332347-29332366 | Msa1055300:intron | 45.0% | |
| TGTGGAGACTGAAGAGCTTA+TGG | - | chr7_2:29332562-29332581 | Msa1055300:intron | 45.0% | |
| AGCAAGTTACTCCTCTTGTC+TGG | + | chr7_2:29332988-29333007 | None:intergenic | 45.0% | |
| TACGGACAATCTGTTGGAAG+TGG | - | chr7_2:29333403-29333422 | Msa1055300:intron | 45.0% | |
| CTAGCTGCAAGATCCAAAGT+TGG | + | chr7_2:29333430-29333449 | None:intergenic | 45.0% | |
| CAACTTTGGATCTTGCAGCT+AGG | - | chr7_2:29333428-29333447 | Msa1055300:intron | 45.0% | |
| !! | GAACACAGGAGCATCTCATT+AGG | + | chr7_2:29333604-29333623 | None:intergenic | 45.0% |
| !! | GAAAGAGCTCTAAATCGCAG+TGG | + | chr7_2:29334340-29334359 | None:intergenic | 45.0% |
| AGCTCTTTCCCGAGTACATA+AGG | - | chr7_2:29334351-29334370 | Msa1055300:intron | 45.0% | |
| CGGAAACTGTATCTTTGCGA+CGG | + | chr7_2:29334413-29334432 | None:intergenic | 45.0% | |
| CGCAAAGATACAGTTTCCGA+AGG | - | chr7_2:29334414-29334433 | Msa1055300:intron | 45.0% | |
| ! | CAAACTGGTCTGTACTCCTT+CGG | + | chr7_2:29334433-29334452 | None:intergenic | 45.0% |
| CTGATCGTAGAGAAAAGCCA+AGG | - | chr7_2:29334501-29334520 | Msa1055300:CDS | 45.0% | |
| !! | TTGACCGACTCGACAGAATA+AGG | - | chr7_2:29334699-29334718 | Msa1055300:CDS | 45.0% |
| CAGTCCTTATTCTGTCGAGT+CGG | + | chr7_2:29334706-29334725 | None:intergenic | 45.0% | |
| TATATTCGTGCACACGGGAT+TGG | - | chr7_2:29334749-29334768 | Msa1055300:intron | 45.0% | |
| !! | CCTGTCAACTGGTTTGTAGT+TGG | + | chr7_2:29335093-29335112 | None:intergenic | 45.0% |
| CCAACTACAAACCAGTTGAC+AGG | - | chr7_2:29335090-29335109 | Msa1055300:five_prime_UTR | 45.0% | |
| !!! | TTTTTGTTAATTTTTTATAT+TGG | - | chr7_2:29334774-29334793 | Msa1055300:five_prime_UTR | 5.0% |
| CGAGATCCAAGGGTTGAAAG+TGG | - | chr7_2:29331044-29331063 | Msa1055300:three_prime_UTR | 50.0% | |
| GGGTGGGGTAACATCATCAA+TGG | - | chr7_2:29331400-29331419 | Msa1055300:CDS | 50.0% | |
| ATGAAACTTTCGACGCGTCG+AGG | - | chr7_2:29331536-29331555 | Msa1055300:CDS | 50.0% | |
| ! | TCATGGTAACGCTGCTGATC+TGG | - | chr7_2:29331619-29331638 | Msa1055300:CDS | 50.0% |
| ! | CATGGTAACGCTGCTGATCT+GGG | - | chr7_2:29331620-29331639 | Msa1055300:CDS | 50.0% |
| CCAAAACGAGTGAGACTGCT+TGG | + | chr7_2:29332028-29332047 | None:intergenic | 50.0% | |
| ! | CCAAGCAGTCTCACTCGTTT+TGG | - | chr7_2:29332025-29332044 | Msa1055300:intron | 50.0% |
| !! | GCAGTCTCACTCGTTTTGGT+CGG | - | chr7_2:29332029-29332048 | Msa1055300:intron | 50.0% |
| TGTTGGAAGTGGCCCAACTT+TGG | - | chr7_2:29333414-29333433 | Msa1055300:intron | 50.0% | |
| TTCCCACGGTAAGCAACTCT+GGG | - | chr7_2:29334268-29334287 | Msa1055300:intron | 50.0% | |
| TTCCCAGAGTTGCTTACCGT+GGG | + | chr7_2:29334273-29334292 | None:intergenic | 50.0% | |
| TACGAACCACTGTGGCTCAA+AGG | - | chr7_2:29334308-29334327 | Msa1055300:intron | 50.0% | |
| TTACCTCCTTTGAGCCACAG+TGG | + | chr7_2:29334317-29334336 | None:intergenic | 50.0% | |
| TCTTTCGAGGCTGCTCAAAC+TGG | + | chr7_2:29334448-29334467 | None:intergenic | 50.0% | |
| TGAGCAGCCTCGAAAGAGTA+CGG | - | chr7_2:29334451-29334470 | Msa1055300:CDS | 50.0% | |
| GGTTTGTCTGTGCTCTTCCT+TGG | + | chr7_2:29334521-29334540 | None:intergenic | 50.0% | |
| GAGCACAGACAAACCAGAGA+AGG | - | chr7_2:29334526-29334545 | Msa1055300:CDS | 50.0% | |
| CGACTCGACAGAATAAGGAC+TGG | - | chr7_2:29334704-29334723 | Msa1055300:exon | 50.0% | |
| GAGAGTGAGGGAGTGAGTGA+AGG | + | chr7_2:29331093-29331112 | None:intergenic | 55.0% | |
| GTACGGACAGTCGTCAGGAA+AGG | - | chr7_2:29333195-29333214 | Msa1055300:intron | 55.0% | |
| GTTCCCACGGTAAGCAACTC+TGG | - | chr7_2:29334267-29334286 | Msa1055300:intron | 55.0% | |
| GTTCCCAGAGTTGCTTACCG+TGG | + | chr7_2:29334274-29334293 | None:intergenic | 55.0% | |
| GAACCACTGTGGCTCAAAGG+AGG | - | chr7_2:29334311-29334330 | Msa1055300:intron | 55.0% | |
| TCTGGGTACGGACAGTCGTC+AGG | - | chr7_2:29333190-29333209 | Msa1055300:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 29330999 | 29335121 | 29330999 | ID=Msa1055300;Name=Msa1055300 |
| chr7_2 | mRNA | 29330999 | 29335121 | 29330999 | ID=Msa1055300-mRNA-1;Parent=Msa1055300;Name=Msa1055300-mRNA-1;_AED=0.17;_eAED=0.17;_QI=365|1|1|1|0.8|0.66|6|391|370 |
| chr7_2 | exon | 29330999 | 29331878 | 29330999 | ID=Msa1055300-mRNA-1:exon:6063;Parent=Msa1055300-mRNA-1 |
| chr7_2 | exon | 29332439 | 29332486 | 29332439 | ID=Msa1055300-mRNA-1:exon:6062;Parent=Msa1055300-mRNA-1 |
| chr7_2 | exon | 29332571 | 29332807 | 29332571 | ID=Msa1055300-mRNA-1:exon:6061;Parent=Msa1055300-mRNA-1 |
| chr7_2 | exon | 29332904 | 29332940 | 29332904 | ID=Msa1055300-mRNA-1:exon:6060;Parent=Msa1055300-mRNA-1 |
| chr7_2 | exon | 29334421 | 29334731 | 29334421 | ID=Msa1055300-mRNA-1:exon:6059;Parent=Msa1055300-mRNA-1 |
| chr7_2 | exon | 29334766 | 29335121 | 29334766 | ID=Msa1055300-mRNA-1:exon:6058;Parent=Msa1055300-mRNA-1 |
| chr7_2 | five_prime_UTR | 29334766 | 29335121 | 29334766 | ID=Msa1055300-mRNA-1:five_prime_utr;Parent=Msa1055300-mRNA-1 |
| chr7_2 | five_prime_UTR | 29334723 | 29334731 | 29334723 | ID=Msa1055300-mRNA-1:five_prime_utr;Parent=Msa1055300-mRNA-1 |
| chr7_2 | CDS | 29334421 | 29334722 | 29334421 | ID=Msa1055300-mRNA-1:cds;Parent=Msa1055300-mRNA-1 |
| chr7_2 | CDS | 29332904 | 29332940 | 29332904 | ID=Msa1055300-mRNA-1:cds;Parent=Msa1055300-mRNA-1 |
| chr7_2 | CDS | 29332571 | 29332807 | 29332571 | ID=Msa1055300-mRNA-1:cds;Parent=Msa1055300-mRNA-1 |
| chr7_2 | CDS | 29332439 | 29332486 | 29332439 | ID=Msa1055300-mRNA-1:cds;Parent=Msa1055300-mRNA-1 |
| chr7_2 | CDS | 29331390 | 29331878 | 29331390 | ID=Msa1055300-mRNA-1:cds;Parent=Msa1055300-mRNA-1 |
| chr7_2 | three_prime_UTR | 29330999 | 29331389 | 29330999 | ID=Msa1055300-mRNA-1:three_prime_utr;Parent=Msa1055300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
