AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0711970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0711970 MtrunA17_Chr5g0396381 78.158 760 73 8 1 742 1 685 0.0 1143
Msa0711970 MtrunA17_Chr3g0090551 35.132 760 364 28 1 732 1 659 1.22e-87 290
Msa0711970 MtrunA17_Chr4g0020571 45.033 302 146 7 445 737 342 632 8.71e-63 222
Msa0711970 MtrunA17_Chr4g0020571 43.933 239 103 12 158 387 128 344 6.91e-36 144
Msa0711970 MtrunA17_Chr5g0445571 28.276 435 212 13 178 581 111 476 1.42e-30 127
Msa0711970 MtrunA17_Chr3g0101151 49.242 132 54 4 450 581 335 453 1.14e-25 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0711970 AT5G12440.3 38.556 734 314 32 1 709 32 653 1.79e-111 353
Msa0711970 AT5G12440.10 38.556 734 314 32 1 709 32 653 1.79e-111 353
Msa0711970 AT5G12440.8 38.556 734 314 32 1 709 32 653 1.79e-111 353
Msa0711970 AT5G12440.5 38.556 734 314 32 1 709 32 653 1.79e-111 353
Msa0711970 AT5G12440.6 38.556 734 314 32 1 709 32 653 1.79e-111 353
Msa0711970 AT5G12440.4 38.556 734 314 32 1 709 1 622 2.16e-111 352
Msa0711970 AT5G12440.11 38.556 734 314 32 1 709 1 622 2.16e-111 352
Msa0711970 AT5G12440.12 38.556 734 314 32 1 709 1 622 2.16e-111 352
Msa0711970 AT5G12440.7 38.556 734 314 32 1 709 1 622 2.16e-111 352
Msa0711970 AT5G12440.1 38.556 734 314 32 1 709 1 622 2.16e-111 352
Msa0711970 AT5G12440.9 38.556 734 314 32 1 709 1 622 2.16e-111 352
Msa0711970 AT5G12440.2 38.556 734 314 32 1 709 1 622 2.16e-111 352
Msa0711970 AT3G21100.2 41.071 392 161 18 7 387 7 339 1.31e-57 207
Msa0711970 AT3G21100.2 47.909 263 102 9 446 701 338 572 2.14e-55 201
Msa0711970 AT3G21100.1 41.071 392 161 18 7 387 7 339 1.31e-57 207
Msa0711970 AT3G21100.1 47.909 263 102 9 446 701 338 572 2.14e-55 201
Msa0711970 AT3G21100.4 41.582 392 159 19 7 387 7 339 1.50e-57 206
Msa0711970 AT3G21100.4 47.348 264 103 9 446 701 338 573 1.19e-54 198
Msa0711970 AT3G21100.3 41.582 392 159 19 7 387 7 339 1.50e-57 206
Msa0711970 AT3G21100.3 47.348 264 103 9 446 701 338 573 1.19e-54 198
Msa0711970 AT1G51520.2 30.791 708 266 29 7 707 7 497 1.42e-56 202
Msa0711970 AT1G51520.1 32.753 574 215 24 7 575 7 414 2.60e-54 193
Msa0711970 AT3G51950.1 39.796 294 111 9 446 730 278 514 6.48e-42 161
Msa0711970 AT3G51950.1 42.778 180 75 9 210 387 126 279 2.64e-23 105
Msa0711970 AT3G51950.1 41.489 94 49 3 1 92 1 90 1.75e-11 67.8
Msa0711970 AT3G51950.3 39.796 294 111 9 446 730 278 514 6.48e-42 161
Msa0711970 AT3G51950.3 42.778 180 75 9 210 387 126 279 2.64e-23 105
Msa0711970 AT3G51950.3 41.489 94 49 3 1 92 1 90 1.75e-11 67.8
Msa0711970 AT3G51950.2 39.796 294 111 9 446 730 278 514 6.48e-42 161
Msa0711970 AT3G51950.2 42.778 180 75 9 210 387 126 279 2.64e-23 105
Msa0711970 AT3G51950.2 41.489 94 49 3 1 92 1 90 1.75e-11 67.8
Msa0711970 AT3G51950.4 39.796 294 111 9 446 730 278 514 6.48e-42 161
Msa0711970 AT3G51950.4 42.778 180 75 9 210 387 126 279 2.64e-23 105
Msa0711970 AT3G51950.4 41.489 94 49 3 1 92 1 90 1.75e-11 67.8
Msa0711970 AT3G63450.6 49.367 158 51 3 446 603 67 195 2.77e-35 136
Msa0711970 AT3G63450.7 49.367 158 53 3 446 603 175 305 1.53e-34 136
Msa0711970 AT3G63450.3 49.367 158 53 3 446 603 175 305 3.05e-34 135
Msa0711970 AT3G63450.4 49.367 158 53 3 446 603 175 305 3.05e-34 135
Msa0711970 AT3G63450.5 49.367 158 53 3 446 603 175 305 3.05e-34 135
Msa0711970 AT3G63450.2 49.367 158 51 3 446 603 175 303 3.27e-34 135
Msa0711970 AT3G63450.1 49.367 158 51 3 446 603 175 303 3.27e-34 135
Msa0711970 AT2G05160.2 67.797 59 19 0 446 504 337 395 4.75e-19 91.7
Msa0711970 AT2G05160.1 67.797 59 19 0 446 504 337 395 4.75e-19 91.7
Msa0711970 AT2G05160.3 67.797 59 19 0 446 504 337 395 6.88e-19 90.9

Find 226 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTTTCTTGCTATGGTTTC+TGG 0.060082 5_1:+3817389 Msa0711970:CDS
GACTCTTCAGCCTCCTTTCT+TGG 0.133175 5_1:-3819523 None:intergenic
GTTTGTCACCTTTGTCTTTC+CGG 0.179944 5_1:+3818979 Msa0711970:CDS
CTCACTTCTGCTGGTTCTTT+AGG 0.186781 5_1:+3819786 Msa0711970:CDS
GGATTAAACTTTGGACTAAT+AGG 0.200781 5_1:-3816587 None:intergenic
CTATGATGAATAACATAAAA+TGG 0.205709 5_1:-3820706 None:intergenic
TTTGGACTAATAGGGTTCTT+TGG 0.231605 5_1:-3816578 None:intergenic
TCTTCATAACCTTGCTATTA+GGG 0.243813 5_1:+3816361 Msa0711970:CDS
GCAAGAAACTCATTCCTTTC+GGG 0.247828 5_1:-3817377 None:intergenic
CCTTCACCTCTTAACCCTAT+TGG 0.270082 5_1:+3816425 Msa0711970:CDS
TTCTTCATAACCTTGCTATT+AGG 0.270313 5_1:+3816360 Msa0711970:CDS
GCCTCCTTTCTTGGAGTTCA+AGG 0.288088 5_1:-3819514 None:intergenic
GGTTGATCCGCGTCTTGAAA+TGG 0.288113 5_1:+3816775 Msa0711970:CDS
GAAGAATATTTCAACATTAC+TGG 0.303045 5_1:+3817344 Msa0711970:CDS
ATATTCTCATAAGACATTAA+AGG 0.311072 5_1:-3816608 None:intergenic
TATCTTATTGAGAAGGAAAA+TGG 0.311434 5_1:+3819463 Msa0711970:CDS
TCTCTCTGTTGGTGCTCCTT+TGG 0.323983 5_1:+3819595 Msa0711970:CDS
ATCGGATTATTCTTGAAATC+TGG 0.325085 5_1:-3819554 None:intergenic
AGACAAAAGCAAAAGAAAAT+AGG 0.326156 5_1:-3820803 None:intergenic
TCTGCAAATGATGCTAGTTT+TGG 0.328687 5_1:+3816866 Msa0711970:CDS
GCTGTTGGTGGCAGTGGTGC+TGG 0.330637 5_1:+3816638 Msa0711970:CDS
CATCACCTTCTGGTAATGTT+TGG 0.334098 5_1:+3816540 Msa0711970:CDS
AGCAAGAAACTCATTCCTTT+CGG 0.335824 5_1:-3817378 None:intergenic
TACCAGCAAAAGCGCATGTT+TGG 0.336745 5_1:+3818956 Msa0711970:CDS
TGCTGAGAGTGGGAATTTAA+AGG 0.339269 5_1:+3819878 Msa0711970:CDS
GATTAAACTTTGGACTAATA+GGG 0.340959 5_1:-3816586 None:intergenic
AAGATGTTTCGGAGTACTTC+AGG 0.343875 5_1:+3817480 Msa0711970:CDS
GTCGTCTAACGGCGATGATT+TGG 0.347901 5_1:+3816754 Msa0711970:CDS
TTACCAGTAGCCGTAGGTTT+TGG 0.348499 5_1:-3816081 None:intergenic
AGTTTCTTGCTATGGTTTCT+GGG 0.349367 5_1:+3817390 Msa0711970:CDS
TTTAAGTTCTTTACAATTCA+AGG 0.357372 5_1:+3820202 Msa0711970:exon
GATGAAGTGATTCTTCCAAT+AGG 0.362935 5_1:-3816440 None:intergenic
CACGTGAGTCACATATGAAA+TGG 0.366446 5_1:-3819036 None:intergenic
AAATCTCCTTGGATGTTATC+AGG 0.366797 5_1:-3819665 None:intergenic
GATGAAAGTGGATTGGGATT+TGG 0.371765 5_1:+3816893 Msa0711970:CDS
TTCACCCAAGTTTGAGGGAT+TGG 0.382468 5_1:+3817021 Msa0711970:CDS
ATTCAAAGATGAAGATGTTT+CGG 0.383022 5_1:+3817469 Msa0711970:CDS
AATAATTTGTTGTCTCAGAT+TGG 0.396338 5_1:-3820741 None:intergenic
ACCATGAACAAACTTACAAT+TGG 0.396580 5_1:-3816963 None:intergenic
CTCTCTGACGCTTCAAAGAT+AGG 0.396969 5_1:+3815972 Msa0711970:five_prime_UTR
GACATTAAAGGATTAAACTT+TGG 0.397652 5_1:-3816596 None:intergenic
AAATCTTCTCCTAGAGGAAC+TGG 0.399520 5_1:+3816482 Msa0711970:CDS
TATTAGGGTAAAGACCCATT+TGG 0.399912 5_1:+3816376 Msa0711970:CDS
GAACAAGTTCATATTCTTCA+AGG 0.400230 5_1:-3816313 None:intergenic
AGATCCACACTACAAAGAAT+TGG 0.402875 5_1:-3815938 None:intergenic
CGCTTTAAAGAGAATATTTG+CGG 0.404246 5_1:+3817654 Msa0711970:CDS
TGAATCGACAACATCTGCTT+CGG 0.405313 5_1:+3820161 Msa0711970:CDS
AGGAACCCTTCATCACCTTC+TGG 0.405702 5_1:+3816530 Msa0711970:CDS
TCCAATTGTAAGTTTGTTCA+TGG 0.406070 5_1:+3816962 Msa0711970:CDS
GTTGATCCGCGTCTTGAAAT+GGG 0.407371 5_1:+3816776 Msa0711970:CDS
TGGGCGTTGGTGGTCAGAAT+TGG 0.414377 5_1:+3816795 Msa0711970:CDS
TTAAGAGGTGAAGGTGAAGA+AGG 0.415332 5_1:-3816416 None:intergenic
ATTAGGGTAAAGACCCATTT+GGG 0.415903 5_1:+3816377 Msa0711970:CDS
GTACTCTCATTAGCCACTTC+CGG 0.418314 5_1:-3820108 None:intergenic
ATGCTTCTCTAGGATGATCT+AGG 0.420612 5_1:-3820540 None:intergenic
ATATTTCAACATTACTGGTC+GGG 0.426560 5_1:+3817349 Msa0711970:CDS
CGCAAATGCTGCCGCAGCCA+CGG 0.428719 5_1:-3817315 None:intergenic
TGAATTGTAAAGAACTTAAA+CGG 0.431400 5_1:-3820199 None:intergenic
GAATCGACAACATCTGCTTC+GGG 0.431778 5_1:+3820162 Msa0711970:CDS
ACAACCAATGTTCTTTCAGT+TGG 0.432665 5_1:-3818398 None:intergenic
GATTCGATTGATGCAAATTC+CGG 0.432753 5_1:+3816986 Msa0711970:CDS
TTGTTCCAATCCCTCAAACT+TGG 0.434886 5_1:-3817026 None:intergenic
ACGTGAGTCACATATGAAAT+GGG 0.436440 5_1:-3819035 None:intergenic
GAGTAAAGGGTATCAAGAAA+TGG 0.437128 5_1:-3816128 None:intergenic
CAAGGTGCTGTTGGTGGCAG+TGG 0.437766 5_1:+3816632 Msa0711970:CDS
ATGAAGTGATTCTTCCAATA+GGG 0.438078 5_1:-3816439 None:intergenic
CAAATTGCTGCTGCTGATGT+TGG 0.441947 5_1:-3819190 None:intergenic
TGTTGGTTCACCCAAGTTTG+AGG 0.444572 5_1:+3817015 Msa0711970:CDS
CACTGTGCACACCATGAAAG+TGG 0.444602 5_1:+3817694 Msa0711970:CDS
GGTGTTGATGAAAGTGGATT+GGG 0.445623 5_1:+3816887 Msa0711970:CDS
AGCATCAGACCAGGGAGCAC+AGG 0.445794 5_1:-3817722 None:intergenic
ATTCTTCCAATAGGGTTAAG+AGG 0.447622 5_1:-3816431 None:intergenic
ACCAGCAAAAGCGCATGTTT+GGG 0.448689 5_1:+3818957 Msa0711970:CDS
GTTGGTTCACCCAAGTTTGA+GGG 0.449991 5_1:+3817016 Msa0711970:CDS
AAGAGGCAAGCAAGGGGAGG+GGG 0.450881 5_1:+3820325 Msa0711970:three_prime_UTR
AATGCTTGAAAGAGAGTAAA+GGG 0.455379 5_1:-3816141 None:intergenic
TCTTTGAATGTGCTTTCAGC+AGG 0.457800 5_1:-3817455 None:intergenic
TGGTGTTGATGAAAGTGGAT+TGG 0.458084 5_1:+3816886 Msa0711970:CDS
GGTAAGGAATTCTCACATCT+TGG 0.459599 5_1:-3818937 None:intergenic
GCTGCATCACAACTTGCTGC+TGG 0.462022 5_1:+3817100 Msa0711970:CDS
TAGATAGGTTCATACCCAAA+TGG 0.462403 5_1:-3816391 None:intergenic
CGTCTTGAAATGGGCGTTGG+TGG 0.465802 5_1:+3816785 Msa0711970:CDS
TATGATGAATAACATAAAAT+GGG 0.467432 5_1:-3820705 None:intergenic
TAAGAGGTGAAGGTGAAGAA+GGG 0.469413 5_1:-3816415 None:intergenic
TGATTTCTCTCCACCGGAAG+TGG 0.471635 5_1:+3820095 Msa0711970:CDS
AATAGGGTTCTTTGGAAAAG+AGG 0.473814 5_1:-3816570 None:intergenic
CACAGGCAAAACCACTTTCA+TGG 0.474335 5_1:-3817705 None:intergenic
AAGGAATGAGTTTCTTGCTA+TGG 0.474746 5_1:+3817382 Msa0711970:CDS
GCTACTGCTGCTGCTGAGAG+TGG 0.476207 5_1:+3819867 Msa0711970:CDS
AAGGTGAAGAAGGGGTAGAT+AGG 0.478323 5_1:-3816406 None:intergenic
AGTGGCAGCCTCACTTCTGC+TGG 0.479574 5_1:+3819777 Msa0711970:CDS
TTTAGCATGTTGTCCTGACC+AGG 0.479663 5_1:+3816337 Msa0711970:CDS
AGGTTATGAAGAACCTGGTC+AGG 0.480573 5_1:-3816350 None:intergenic
CCACCAAAACCTACGGCTAC+TGG 0.483036 5_1:+3816078 Msa0711970:five_prime_UTR
GAGAAGGAAAATGGAGGAGC+AGG 0.484754 5_1:+3819472 Msa0711970:CDS
CTAGAGAAGCATCAAAACTA+AGG 0.485524 5_1:+3820551 Msa0711970:three_prime_UTR
CTGCGCTGGTGGTGGTGAAT+CGG 0.486467 5_1:-3819572 None:intergenic
GGTGAAGCAAAGAGACTGTC+AGG 0.486964 5_1:-3820045 None:intergenic
AAGATGTCAACTTACTTGTC+AGG 0.488252 5_1:-3819094 None:intergenic
TCCGTCTGATTTCTCTCCAC+CGG 0.488582 5_1:+3820089 Msa0711970:CDS
AGGTGCTGCATCTGAGCAGC+AGG 0.492634 5_1:+3819806 Msa0711970:CDS
AGAAAATAGGTACATAATGA+TGG 0.493862 5_1:-3820790 None:intergenic
ATCTGCCGCGAAGCAGAGTT+AGG 0.493933 5_1:-3817419 None:intergenic
ATGTACTTGTCGTACGATAC+CGG 0.495797 5_1:-3817133 None:intergenic
ACAAGAGGCAAGCAAGGGGA+GGG 0.496163 5_1:+3820323 Msa0711970:three_prime_UTR
GCAAATTCCGGTGCTGTTGT+TGG 0.496350 5_1:+3816998 Msa0711970:CDS
GAGAAATTTGATTACCAGGA+TGG 0.500480 5_1:-3819277 None:intergenic
TTACCAGGATGGAAATCAAA+AGG 0.503183 5_1:-3819266 None:intergenic
GCTTCACCAACAAAAGCAGC+TGG 0.504326 5_1:+3820060 Msa0711970:CDS
CAAGAGGCAAGCAAGGGGAG+GGG 0.506271 5_1:+3820324 Msa0711970:three_prime_UTR
ACTAACCTGTAAAATCTCCT+TGG 0.506306 5_1:-3819676 None:intergenic
AGATAGGTTCATACCCAAAT+GGG 0.506648 5_1:-3816390 None:intergenic
CATGTCTTTACTTTGCTAGA+GGG 0.506660 5_1:+3816924 Msa0711970:CDS
AATATGACTCTCACTGTCTC+CGG 0.508178 5_1:-3818998 None:intergenic
TCAACATTACTGGTCGGGGC+AGG 0.511014 5_1:+3817354 Msa0711970:CDS
ATAGGGTTCTTTGGAAAAGA+GGG 0.511296 5_1:-3816569 None:intergenic
GGTGGTCAGAATTGGATCTC+TGG 0.511430 5_1:+3816803 Msa0711970:CDS
CTACTGCTGCTGCTGAGAGT+GGG 0.512956 5_1:+3819868 Msa0711970:CDS
TTGTGTGAAATTGCGCGGAT+AGG 0.513544 5_1:+3820848 Msa0711970:three_prime_UTR
TAATCACCATTATTAACCCT+TGG 0.513837 5_1:-3816680 None:intergenic
TGTTCCAATCCCTCAAACTT+GGG 0.514806 5_1:-3817025 None:intergenic
ACATTACCAGAAGGTGATGA+AGG 0.516499 5_1:-3816536 None:intergenic
GAATGTGCTTTCAGCAGGAA+AGG 0.517326 5_1:-3817450 None:intergenic
TGAAGAGTTCATGAGGTTCA+AGG 0.521920 5_1:+3817051 Msa0711970:CDS
TTTCTCAATGAGTCGTCTAA+CGG 0.522774 5_1:+3816743 Msa0711970:CDS
TAACATGGCTATGAAGTTGA+TGG 0.523547 5_1:-3819625 None:intergenic
CCATGTCTTTACTTTGCTAG+AGG 0.529183 5_1:+3816923 Msa0711970:CDS
TGCTGCTGGTGGAACATCAC+CGG 0.530369 5_1:+3817114 Msa0711970:CDS
AGAGGAACTGGACTTAGTAA+TGG 0.530744 5_1:+3816494 Msa0711970:CDS
AAGAGGTGAAGGTGAAGAAG+GGG 0.530887 5_1:-3816414 None:intergenic
TGCAATATGTATTGCTTGGT+CGG 0.533943 5_1:-3820617 None:intergenic
CTGGTCGGGGCAGGCCCGAA+AGG 0.534386 5_1:+3817363 Msa0711970:CDS
AACATGGCTATGAAGTTGAT+GGG 0.534397 5_1:-3819624 None:intergenic
CTTCTCAATAAGATATCATG+TGG 0.536105 5_1:-3819455 None:intergenic
TTACTAAGTCCAGTTCCTCT+AGG 0.536989 5_1:-3816491 None:intergenic
TTATCCAATTCTTTGTAGTG+TGG 0.538684 5_1:+3815934 Msa0711970:five_prime_UTR
AAAACCTACGGCTACTGGTA+AGG 0.538757 5_1:+3816083 Msa0711970:five_prime_UTR
ATGCTCATAATATTCATAAG+AGG 0.539122 5_1:+3816837 Msa0711970:CDS
GGCTGCGGCAGCATTTGCGA+TGG 0.539812 5_1:+3817319 Msa0711970:CDS
AAGGATGTTGCAAAGTCTGA+AGG 0.540390 5_1:+3819897 Msa0711970:CDS
TATTTCAACATTACTGGTCG+GGG 0.542341 5_1:+3817350 Msa0711970:CDS
ATTTCCAACTGAAAGAACAT+TGG 0.542751 5_1:+3818394 Msa0711970:CDS
GCATCACAACTTGCTGCTGG+TGG 0.543311 5_1:+3817103 Msa0711970:CDS
CATAGCCATGTTAACCATGC+AGG 0.544634 5_1:+3819635 Msa0711970:CDS
TGATTGATGATTGATGATGA+TGG 0.545525 5_1:-3820577 None:intergenic
AAATGCTTGAAAGAGAGTAA+AGG 0.549806 5_1:-3816142 None:intergenic
CACCAGCGCAGTCTCTCTGT+TGG 0.552012 5_1:+3819584 Msa0711970:CDS
AGCAATACATATTGCATACA+TGG 0.552154 5_1:+3820624 Msa0711970:three_prime_UTR
ACATTTCAGAGCCGTGGCTG+CGG 0.553398 5_1:+3817304 Msa0711970:intron
ATCTGCTTCGGGTGACAACA+TGG 0.554785 5_1:+3820173 Msa0711970:CDS
TTGTTGACTCTACAGAAATG+TGG 0.554888 5_1:+3820011 Msa0711970:intron
TGCTCAGCAGCATCAAAGAA+TGG 0.555393 5_1:+3817075 Msa0711970:CDS
AAGTCCTTGAACTCCAAGAA+AGG 0.556107 5_1:+3819510 Msa0711970:CDS
GAAGGCGTAGATCTCGGCAT+GGG 0.556601 5_1:+3819915 Msa0711970:CDS
AAGTCTGAAGGCGTAGATCT+CGG 0.557200 5_1:+3819909 Msa0711970:CDS
CACATGATATCTTATTGAGA+AGG 0.557830 5_1:+3819456 Msa0711970:CDS
CACTGCCACCAACAGCACCT+TGG 0.559329 5_1:-3816631 None:intergenic
AATATTTCAACATTACTGGT+CGG 0.562602 5_1:+3817348 Msa0711970:CDS
TACAAGAGGCAAGCAAGGGG+AGG 0.562749 5_1:+3820322 Msa0711970:three_prime_UTR
ATAACATAAAATGGGAAAGG+AGG 0.563680 5_1:-3820697 None:intergenic
AAAGACCTGCATGGTTAACA+TGG 0.565559 5_1:-3819640 None:intergenic
GGAATTCTCACATCTTGGAC+AGG 0.567021 5_1:-3818932 None:intergenic
GTTTCTTGCTATGGTTTCTG+GGG 0.567026 5_1:+3817391 Msa0711970:CDS
TATGTTACATTTCAGAGCCG+TGG 0.567197 5_1:+3817298 Msa0711970:intron
CAACAGAGAGACTGCGCTGG+TGG 0.569130 5_1:-3819583 None:intergenic
CCAATAGGGTTAAGAGGTGA+AGG 0.570288 5_1:-3816425 None:intergenic
GACTTTAGCAAGAACCACAT+TGG 0.572181 5_1:-3816237 None:intergenic
TACATATTGCATACATGGAT+AGG 0.572521 5_1:+3820629 Msa0711970:three_prime_UTR
TGAATAACATAAAATGGGAA+AGG 0.574733 5_1:-3820700 None:intergenic
CAAATATTCTCTTTAAAGCG+TGG 0.575174 5_1:-3817651 None:intergenic
GAGAATATCCAAGGTGCTGT+TGG 0.575381 5_1:+3816623 Msa0711970:CDS
TTAGACGACTCATTGAGAAA+AGG 0.576395 5_1:-3816740 None:intergenic
AAAATACAAGAGGCAAGCAA+GGG 0.581659 5_1:+3820318 Msa0711970:three_prime_UTR
CACTGTCTCCGGAAAGACAA+AGG 0.581924 5_1:-3818987 None:intergenic
TGTGAAACCCTACAAGGAGA+AGG 0.583303 5_1:+3819063 Msa0711970:CDS
TCCTTGAACTCCAAGAAAGG+AGG 0.583568 5_1:+3819513 Msa0711970:CDS
CCGCGTCTTGAAATGGGCGT+TGG 0.584382 5_1:+3816782 Msa0711970:CDS
ATGTCTTATGAGAATATCCA+AGG 0.586654 5_1:+3816614 Msa0711970:CDS
CTTTCCATTGCAGGCTACAG+TGG 0.586758 5_1:+3819759 Msa0711970:intron
CTTTCTCCTGATAACATCCA+AGG 0.587933 5_1:+3819659 Msa0711970:CDS
CAGAGAGACTGCGCTGGTGG+TGG 0.594991 5_1:-3819580 None:intergenic
GTTGGTGGCAGTGGTGCTGG+TGG 0.595287 5_1:+3816641 Msa0711970:CDS
GCTGCGGCAGCATTTGCGAT+GGG 0.597928 5_1:+3817320 Msa0711970:CDS
AAGCAAAGAGACTGTCAGGA+AGG 0.599815 5_1:-3820041 None:intergenic
TCTTTAGAGTCAAACGCAGA+GGG 0.601397 5_1:-3819242 None:intergenic
TAGCAAGGTTATGAAGAACC+TGG 0.603647 5_1:-3816355 None:intergenic
GTGAGAGTCATATTATCGAA+AGG 0.603657 5_1:+3819007 Msa0711970:CDS
GGGTCTTTACCCTAATAGCA+AGG 0.608257 5_1:-3816370 None:intergenic
GGGTGAACCAACAACAGCAC+CGG 0.609002 5_1:-3817005 None:intergenic
TCAGCAGCAGCAATTTGAGA+GGG 0.609147 5_1:+3819196 Msa0711970:CDS
CCTCTAGCAAAGTAAAGACA+TGG 0.612058 5_1:-3816923 None:intergenic
GTGAAACCCTACAAGGAGAA+GGG 0.615151 5_1:+3819064 Msa0711970:CDS
CATTACCAGAAGGTGATGAA+GGG 0.615959 5_1:-3816535 None:intergenic
AGCAGCACAGTGATAATCAA+AGG 0.615972 5_1:+3817170 Msa0711970:CDS
TGTATGCAATATGTATTGCT+TGG 0.617673 5_1:-3820621 None:intergenic
CTCTCATTAGCCACTTCCGG+TGG 0.619392 5_1:-3820105 None:intergenic
AGCAAAGAGACTGTCAGGAA+GGG 0.620621 5_1:-3820040 None:intergenic
AATTGGATCTCTGGTAACAA+TGG 0.622958 5_1:+3816812 Msa0711970:CDS
AGATCTTGTGTGAAATTGCG+CGG 0.623399 5_1:+3820843 Msa0711970:three_prime_UTR
ATCAGCAGCAGCAATTTGAG+AGG 0.624147 5_1:+3819195 Msa0711970:CDS
ACAAGCCTAACTCTGCTTCG+CGG 0.624378 5_1:+3817414 Msa0711970:CDS
TGTGCTTGTGAAACCCTACA+AGG 0.627297 5_1:+3819057 Msa0711970:CDS
TGTATAGCCACCAAAACCTA+CGG 0.627885 5_1:+3816071 Msa0711970:five_prime_UTR
TCCGGTGGAGAGAAATCAGA+CGG 0.628112 5_1:-3820090 None:intergenic
GTAGCAGCATCAATGCAAGA+TGG 0.631513 5_1:-3819849 None:intergenic
CACCAACAGAGAGACTGCGC+TGG 0.632218 5_1:-3819586 None:intergenic
CTAAAGAACCAGCAGAAGTG+AGG 0.639544 5_1:-3819785 None:intergenic
AACAACATGAAGAGTTCATG+AGG 0.641597 5_1:+3817044 Msa0711970:CDS
TTCTTTAGAGTCAAACGCAG+AGG 0.643087 5_1:-3819243 None:intergenic
AATATCCAAGGTGCTGTTGG+TGG 0.644306 5_1:+3816626 Msa0711970:CDS
TGAAGGCGTAGATCTCGGCA+TGG 0.644522 5_1:+3819914 Msa0711970:CDS
CTTATTGAGAAGGAAAATGG+AGG 0.653298 5_1:+3819466 Msa0711970:CDS
ACATGGCTATGAAGTTGATG+GGG 0.654909 5_1:-3819623 None:intergenic
TTCTTATGAAGCAACCAATG+TGG 0.670186 5_1:+3816223 Msa0711970:CDS
AAGGCGTAGATCTCGGCATG+GGG 0.671195 5_1:+3819916 Msa0711970:CDS
TCAGCAGCATCAAAGAATGG+TGG 0.671588 5_1:+3817078 Msa0711970:CDS
AAGGGGAGAATCCAAATACA+CGG 0.675208 5_1:+3818364 Msa0711970:intron
CGTGAGTCACATATGAAATG+GGG 0.678147 5_1:-3819034 None:intergenic
AAATACAAGAGGCAAGCAAG+GGG 0.680528 5_1:+3820319 Msa0711970:three_prime_UTR
AACGCAGAGGGACTTAAACA+TGG 0.682483 5_1:-3819230 None:intergenic
CCAACGCCCATTTCAAGACG+CGG 0.684511 5_1:-3816782 None:intergenic
CAGCAGCAGCAATTTGAGAG+GGG 0.685988 5_1:+3819197 Msa0711970:CDS
TATCAGGAGAAAGACCTGCA+TGG 0.700183 5_1:-3819649 None:intergenic
TGTGACCAAACATTACCAGA+AGG 0.700366 5_1:-3816545 None:intergenic
CATACCTTACCAGTAGCCGT+AGG 0.703434 5_1:-3816087 None:intergenic
GGTGTGCACAGTGAAAATCG+TGG 0.781448 5_1:-3817684 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGTTTTAATATTATGTA+TGG + chr5_1:3817274-3817293 Msa0711970:intron 10.0%
!!! TATTTATGTATTTATTTCTT+AGG + chr5_1:3820255-3820274 Msa0711970:intron 10.0%
!! TTGTTAATGTTATTCTTATT+TGG + chr5_1:3818248-3818267 Msa0711970:intron 15.0%
!!! ATTACGATTTTATGAATAAT+AGG + chr5_1:3818571-3818590 Msa0711970:intron 15.0%
!! GATCGTATTTATATTTATAT+CGG + chr5_1:3819965-3819984 Msa0711970:intron 15.0%
!! TATGATGAATAACATAAAAT+GGG - chr5_1:3820708-3820727 None:intergenic 15.0%
!!! AAGATTTGATTTTTCACTAA+TGG + chr5_1:3816199-3816218 Msa0711970:exon 20.0%
!!! AGATTTGATTTTTCACTAAT+GGG + chr5_1:3816200-3816219 Msa0711970:exon 20.0%
!! ATATTCTCATAAGACATTAA+AGG - chr5_1:3816611-3816630 None:intergenic 20.0%
!!! AAAGGTATATTTCTTATAGA+TGG + chr5_1:3817188-3817207 Msa0711970:intron 20.0%
!! AAGGTATATTTCTTATAGAT+GGG + chr5_1:3817189-3817208 Msa0711970:intron 20.0%
!! TTAAATTGCATAATGATGAA+GGG - chr5_1:3817878-3817897 None:intergenic 20.0%
!!! AAATGAATATTGATTTGTCA+AGG + chr5_1:3818345-3818364 Msa0711970:intron 20.0%
!!! AATGAATATTGATTTGTCAA+GGG + chr5_1:3818346-3818365 Msa0711970:intron 20.0%
!!! AATTTTTTGTACCTATCATT+AGG + chr5_1:3818730-3818749 Msa0711970:intron 20.0%
!!! TTGTTATTTTGAAGCAAATT+TGG + chr5_1:3818908-3818927 Msa0711970:intron 20.0%
!! TGAATTGTAAAGAACTTAAA+CGG - chr5_1:3820202-3820221 None:intergenic 20.0%
!!! TTTAAGTTCTTTACAATTCA+AGG + chr5_1:3820202-3820221 Msa0711970:exon 20.0%
!! CTATGATGAATAACATAAAA+TGG - chr5_1:3820709-3820728 None:intergenic 20.0%
!!! TGATTTTTGAAGCATTTTCA+GGG - chr5_1:3816274-3816293 None:intergenic 25.0%
!!! ATGATTTTTGAAGCATTTTC+AGG - chr5_1:3816275-3816294 None:intergenic 25.0%
! TGAAAATGCTTCAAAAATCA+TGG + chr5_1:3816274-3816293 Msa0711970:CDS 25.0%
! GAAAATGCTTCAAAAATCAT+GGG + chr5_1:3816275-3816294 Msa0711970:CDS 25.0%
!!! AGATTTTGAAAAAGGGTTAT+TGG - chr5_1:3816468-3816487 None:intergenic 25.0%
!!! TAGGAGAAGATTTTGAAAAA+GGG - chr5_1:3816475-3816494 None:intergenic 25.0%
! GATTAAACTTTGGACTAATA+GGG - chr5_1:3816589-3816608 None:intergenic 25.0%
! GACATTAAAGGATTAAACTT+TGG - chr5_1:3816599-3816618 None:intergenic 25.0%
! ATGCTCATAATATTCATAAG+AGG + chr5_1:3816837-3816856 Msa0711970:CDS 25.0%
! AAGTAAACAACAAACTAAAG+AGG - chr5_1:3817220-3817239 None:intergenic 25.0%
! GAAGAATATTTCAACATTAC+TGG + chr5_1:3817344-3817363 Msa0711970:CDS 25.0%
! AATATTTCAACATTACTGGT+CGG + chr5_1:3817348-3817367 Msa0711970:CDS 25.0%
! ATTCAAAGATGAAGATGTTT+CGG + chr5_1:3817469-3817488 Msa0711970:CDS 25.0%
! TATATCACCTTATCATAGAT+AGG + chr5_1:3817555-3817574 Msa0711970:intron 25.0%
! ATATTGCCATTAATTATTCC+AGG + chr5_1:3817626-3817645 Msa0711970:intron 25.0%
! AAAAGACACATTACTTAGTT+AGG - chr5_1:3817804-3817823 None:intergenic 25.0%
!! TTGAGTTTGCTTGATAATTA+AGG + chr5_1:3817840-3817859 Msa0711970:intron 25.0%
!! TGAGTTTGCTTGATAATTAA+GGG + chr5_1:3817841-3817860 Msa0711970:intron 25.0%
! CTTAAATTGCATAATGATGA+AGG - chr5_1:3817879-3817898 None:intergenic 25.0%
!! TGTAACGTTCTTTTTGTATT+AGG + chr5_1:3817967-3817986 Msa0711970:intron 25.0%
!!! ATGAATATTGATTTGTCAAG+GGG + chr5_1:3818347-3818366 Msa0711970:intron 25.0%
!! AAATAGATTTTCCGTGTATT+TGG - chr5_1:3818378-3818397 None:intergenic 25.0%
! TACTTCATTTGTAACTAACA+TGG - chr5_1:3818459-3818478 None:intergenic 25.0%
!! CGATTTTATGAATAATAGGA+TGG + chr5_1:3818575-3818594 Msa0711970:intron 25.0%
!! TTTAAAATGTTACCTTCTGA+GGG - chr5_1:3818635-3818654 None:intergenic 25.0%
! TATTCCCGAATTGATATTAT+TGG + chr5_1:3819143-3819162 Msa0711970:intron 25.0%
! ATTCCCGAATTGATATTATT+GGG + chr5_1:3819144-3819163 Msa0711970:intron 25.0%
! TAGTCCCAATAATATCAATT+CGG - chr5_1:3819151-3819170 None:intergenic 25.0%
! AGAGGAAAAAGGAAAATTTA+TGG - chr5_1:3819359-3819378 None:intergenic 25.0%
! TATCTTATTGAGAAGGAAAA+TGG + chr5_1:3819463-3819482 Msa0711970:CDS 25.0%
!!! CATCTAAGATTTTGAATTGT+AGG + chr5_1:3820290-3820309 Msa0711970:intron 25.0%
! GTAGGTAATAAAAATACAAG+AGG + chr5_1:3820308-3820327 Msa0711970:intron 25.0%
! AAGGATAAATGAGTGAAAAA+AGG - chr5_1:3820384-3820403 None:intergenic 25.0%
!!! ACATTTATTTTCACCTGTAA+AGG - chr5_1:3820403-3820422 None:intergenic 25.0%
! TGAATAACATAAAATGGGAA+AGG - chr5_1:3820703-3820722 None:intergenic 25.0%
!!! AATAATTTGTTGTCTCAGAT+TGG - chr5_1:3820744-3820763 None:intergenic 25.0%
! AGAAAATAGGTACATAATGA+TGG - chr5_1:3820793-3820812 None:intergenic 25.0%
! AGACAAAAGCAAAAGAAAAT+AGG - chr5_1:3820806-3820825 None:intergenic 25.0%
TTATCCAATTCTTTGTAGTG+TGG + chr5_1:3815934-3815953 Msa0711970:five_prime_UTR 30.0%
AATGCTTGAAAGAGAGTAAA+GGG - chr5_1:3816144-3816163 None:intergenic 30.0%
AAATGCTTGAAAGAGAGTAA+AGG - chr5_1:3816145-3816164 None:intergenic 30.0%
GAACAAGTTCATATTCTTCA+AGG - chr5_1:3816316-3816335 None:intergenic 30.0%
!! TTCTTCATAACCTTGCTATT+AGG + chr5_1:3816360-3816379 Msa0711970:CDS 30.0%
!! TCTTCATAACCTTGCTATTA+GGG + chr5_1:3816361-3816380 Msa0711970:CDS 30.0%
ATGAAGTGATTCTTCCAATA+GGG - chr5_1:3816442-3816461 None:intergenic 30.0%
!! CTAGGAGAAGATTTTGAAAA+AGG - chr5_1:3816476-3816495 None:intergenic 30.0%
! TTTTCAAAATCTTCTCCTAG+AGG + chr5_1:3816476-3816495 Msa0711970:CDS 30.0%
!!! GTAATGGTTTTGACTTCAAT+AGG + chr5_1:3816510-3816529 Msa0711970:CDS 30.0%
GGATTAAACTTTGGACTAAT+AGG - chr5_1:3816590-3816609 None:intergenic 30.0%
ATGTCTTATGAGAATATCCA+AGG + chr5_1:3816614-3816633 Msa0711970:CDS 30.0%
! TTTTCACCAAGGGTTAATAA+TGG + chr5_1:3816674-3816693 Msa0711970:CDS 30.0%
TAATCACCATTATTAACCCT+TGG - chr5_1:3816683-3816702 None:intergenic 30.0%
! TCCAATTGTAAGTTTGTTCA+TGG + chr5_1:3816962-3816981 Msa0711970:CDS 30.0%
ACCATGAACAAACTTACAAT+TGG - chr5_1:3816966-3816985 None:intergenic 30.0%
ATATTTCAACATTACTGGTC+GGG + chr5_1:3817349-3817368 Msa0711970:CDS 30.0%
CGAATAACCTATCTATGATA+AGG - chr5_1:3817565-3817584 None:intergenic 30.0%
!! CAAATATTCTCTTTAAAGCG+TGG - chr5_1:3817654-3817673 None:intergenic 30.0%
!! CGCTTTAAAGAGAATATTTG+CGG + chr5_1:3817654-3817673 Msa0711970:CDS 30.0%
AAACTCAAATCAATCAAGGA+TGG - chr5_1:3817828-3817847 None:intergenic 30.0%
AAGCAAACTCAAATCAATCA+AGG - chr5_1:3817832-3817851 None:intergenic 30.0%
! GATAATTAAGGGTTTTCAAC+TGG + chr5_1:3817852-3817871 Msa0711970:intron 30.0%
AATTTAAGCTCAGTAATCAC+TGG + chr5_1:3817891-3817910 Msa0711970:intron 30.0%
AGAACGTTACACATAAAACA+CGG - chr5_1:3817958-3817977 None:intergenic 30.0%
GACTTCTAAACTATGTTAAC+AGG - chr5_1:3818314-3818333 None:intergenic 30.0%
ATTTCCAACTGAAAGAACAT+TGG + chr5_1:3818394-3818413 Msa0711970:CDS 30.0%
TGTGTTTATTTGTGAACCAT+AGG + chr5_1:3818601-3818620 Msa0711970:intron 30.0%
GTGTTTATTTGTGAACCATA+GGG + chr5_1:3818602-3818621 Msa0711970:intron 30.0%
!! CTTTAAAATGTTACCTTCTG+AGG - chr5_1:3818636-3818655 None:intergenic 30.0%
! CTCAGAAGGTAACATTTTAA+AGG + chr5_1:3818634-3818653 Msa0711970:intron 30.0%
ATAACTATTAAGCGTTCTTG+CGG + chr5_1:3818676-3818695 Msa0711970:intron 30.0%
TTGTTCATTTATGTGTCAGA+AGG - chr5_1:3818712-3818731 None:intergenic 30.0%
! TTTTGTACCTATCATTAGGT+AGG + chr5_1:3818734-3818753 Msa0711970:intron 30.0%
TTAGGTAGGTTCTTACTTAT+AGG + chr5_1:3818748-3818767 Msa0711970:intron 30.0%
TCTTATTGCATCTTTACAGA+AGG + chr5_1:3818861-3818880 Msa0711970:intron 30.0%
AGTCCCAATAATATCAATTC+GGG - chr5_1:3819150-3819169 None:intergenic 30.0%
CTTCTCAATAAGATATCATG+TGG - chr5_1:3819458-3819477 None:intergenic 30.0%
CACATGATATCTTATTGAGA+AGG + chr5_1:3819456-3819475 Msa0711970:CDS 30.0%
ATCGGATTATTCTTGAAATC+TGG - chr5_1:3819557-3819576 None:intergenic 30.0%
! TCTTTACAATTCAAGGTACT+TGG + chr5_1:3820209-3820228 Msa0711970:intron 30.0%
TTCACTCATTTATCCTTTAC+AGG + chr5_1:3820387-3820406 Msa0711970:intron 30.0%
!! TGATTGATGATTGATGATGA+TGG - chr5_1:3820580-3820599 None:intergenic 30.0%
TGTATGCAATATGTATTGCT+TGG - chr5_1:3820624-3820643 None:intergenic 30.0%
AGCAATACATATTGCATACA+TGG + chr5_1:3820624-3820643 Msa0711970:three_prime_UTR 30.0%
TACATATTGCATACATGGAT+AGG + chr5_1:3820629-3820648 Msa0711970:three_prime_UTR 30.0%
ATAACATAAAATGGGAAAGG+AGG - chr5_1:3820700-3820719 None:intergenic 30.0%
AGATCCACACTACAAAGAAT+TGG - chr5_1:3815941-3815960 None:intergenic 35.0%
!! GAGTAAAGGGTATCAAGAAA+TGG - chr5_1:3816131-3816150 None:intergenic 35.0%
TTCTTATGAAGCAACCAATG+TGG + chr5_1:3816223-3816242 Msa0711970:CDS 35.0%
TATTAGGGTAAAGACCCATT+TGG + chr5_1:3816376-3816395 Msa0711970:CDS 35.0%
ATTAGGGTAAAGACCCATTT+GGG + chr5_1:3816377-3816396 Msa0711970:CDS 35.0%
AGATAGGTTCATACCCAAAT+GGG - chr5_1:3816393-3816412 None:intergenic 35.0%
TAGATAGGTTCATACCCAAA+TGG - chr5_1:3816394-3816413 None:intergenic 35.0%
ATTCTTCCAATAGGGTTAAG+AGG - chr5_1:3816434-3816453 None:intergenic 35.0%
GATGAAGTGATTCTTCCAAT+AGG - chr5_1:3816443-3816462 None:intergenic 35.0%
! ATAGGGTTCTTTGGAAAAGA+GGG - chr5_1:3816572-3816591 None:intergenic 35.0%
! AATAGGGTTCTTTGGAAAAG+AGG - chr5_1:3816573-3816592 None:intergenic 35.0%
TTTGGACTAATAGGGTTCTT+TGG - chr5_1:3816581-3816600 None:intergenic 35.0%
!!! TTCTTGTGCTTTTTCACCAA+GGG + chr5_1:3816664-3816683 Msa0711970:CDS 35.0%
TTAGACGACTCATTGAGAAA+AGG - chr5_1:3816743-3816762 None:intergenic 35.0%
TTTCTCAATGAGTCGTCTAA+CGG + chr5_1:3816743-3816762 Msa0711970:CDS 35.0%
AATTGGATCTCTGGTAACAA+TGG + chr5_1:3816812-3816831 Msa0711970:CDS 35.0%
!! TCTGCAAATGATGCTAGTTT+TGG + chr5_1:3816866-3816885 Msa0711970:CDS 35.0%
!!! AGTTTTGGTGTTGATGAAAG+TGG + chr5_1:3816881-3816900 Msa0711970:CDS 35.0%
CATGTCTTTACTTTGCTAGA+GGG + chr5_1:3816924-3816943 Msa0711970:CDS 35.0%
!! GCTAGAGGGTTTTGTAAAAA+TGG + chr5_1:3816938-3816957 Msa0711970:CDS 35.0%
GATTCGATTGATGCAAATTC+CGG + chr5_1:3816986-3817005 Msa0711970:CDS 35.0%
AACAACATGAAGAGTTCATG+AGG + chr5_1:3817044-3817063 Msa0711970:CDS 35.0%
TATTTCAACATTACTGGTCG+GGG + chr5_1:3817350-3817369 Msa0711970:CDS 35.0%
AGCAAGAAACTCATTCCTTT+CGG - chr5_1:3817381-3817400 None:intergenic 35.0%
AAGGAATGAGTTTCTTGCTA+TGG + chr5_1:3817382-3817401 Msa0711970:CDS 35.0%
! AGTTTCTTGCTATGGTTTCT+GGG + chr5_1:3817390-3817409 Msa0711970:CDS 35.0%
TTATTCGCGCATACATGAAA+TGG + chr5_1:3817578-3817597 Msa0711970:intron 35.0%
GTGGAACCTGGAATAATTAA+TGG - chr5_1:3817635-3817654 None:intergenic 35.0%
TCAAAAATCCATCTTCCCTA+GGG - chr5_1:3817757-3817776 None:intergenic 35.0%
ATCAAAAATCCATCTTCCCT+AGG - chr5_1:3817758-3817777 None:intergenic 35.0%
ACATTACTTAGTTAGGAGTC+AGG - chr5_1:3817797-3817816 None:intergenic 35.0%
! GGTTTATCCTGTACATTTTC+AGG + chr5_1:3818035-3818054 Msa0711970:intron 35.0%
AGTGATACCTGAAAATGTAC+AGG - chr5_1:3818045-3818064 None:intergenic 35.0%
ACAACCAATGTTCTTTCAGT+TGG - chr5_1:3818401-3818420 None:intergenic 35.0%
AAGTTCATGTACTACTAGCA+TGG - chr5_1:3818484-3818503 None:intergenic 35.0%
GTAAGAACCTACCTAATGAT+AGG - chr5_1:3818744-3818763 None:intergenic 35.0%
GTTATTGCAATCATGACATC+TGG + chr5_1:3818773-3818792 Msa0711970:intron 35.0%
! ACTTTTACAGACAGACACTA+CGG - chr5_1:3818841-3818860 None:intergenic 35.0%
GTGAGAGTCATATTATCGAA+AGG + chr5_1:3819007-3819026 Msa0711970:CDS 35.0%
ACGTGAGTCACATATGAAAT+GGG - chr5_1:3819038-3819057 None:intergenic 35.0%
AAGATGTCAACTTACTTGTC+AGG - chr5_1:3819097-3819116 None:intergenic 35.0%
TTGGGACTAATCATGTATAC+AGG + chr5_1:3819162-3819181 Msa0711970:intron 35.0%
TTACCAGGATGGAAATCAAA+AGG - chr5_1:3819269-3819288 None:intergenic 35.0%
GAGAAATTTGATTACCAGGA+TGG - chr5_1:3819280-3819299 None:intergenic 35.0%
AGGTGAGAAATTTGATTACC+AGG - chr5_1:3819284-3819303 None:intergenic 35.0%
GGTAATCAAATTTCTCACCT+TGG + chr5_1:3819284-3819303 Msa0711970:intron 35.0%
!! ATGGTTGCTTTAGAGGAAAA+AGG - chr5_1:3819370-3819389 None:intergenic 35.0%
TTCTTGTTCCTGCATGAAAT+AGG - chr5_1:3819424-3819443 None:intergenic 35.0%
CTTATTGAGAAGGAAAATGG+AGG + chr5_1:3819466-3819485 Msa0711970:CDS 35.0%
! AACATGGCTATGAAGTTGAT+GGG - chr5_1:3819627-3819646 None:intergenic 35.0%
TAACATGGCTATGAAGTTGA+TGG - chr5_1:3819628-3819647 None:intergenic 35.0%
AAATCTCCTTGGATGTTATC+AGG - chr5_1:3819668-3819687 None:intergenic 35.0%
! AACATCCAAGGAGATTTTAC+AGG + chr5_1:3819671-3819690 Msa0711970:CDS 35.0%
ACTAACCTGTAAAATCTCCT+TGG - chr5_1:3819679-3819698 None:intergenic 35.0%
AGAACTACACCATAGTATAC+AGG - chr5_1:3819702-3819721 None:intergenic 35.0%
GTAAGCTGTTAAAACCATGT+TGG - chr5_1:3819727-3819746 None:intergenic 35.0%
GTTAACATACTTTCCATTGC+AGG + chr5_1:3819750-3819769 Msa0711970:intron 35.0%
!! TTGTTGACTCTACAGAAATG+TGG + chr5_1:3820011-3820030 Msa0711970:intron 35.0%
AAAAATACAAGAGGCAAGCA+AGG + chr5_1:3820317-3820336 Msa0711970:three_prime_UTR 35.0%
AAAATACAAGAGGCAAGCAA+GGG + chr5_1:3820318-3820337 Msa0711970:three_prime_UTR 35.0%
GAGGGGGATCATATTAATTA+GGG + chr5_1:3820341-3820360 Msa0711970:three_prime_UTR 35.0%
!!! CTTAGTTTTGATGCTTCTCT+AGG - chr5_1:3820553-3820572 None:intergenic 35.0%
!! CTAGAGAAGCATCAAAACTA+AGG + chr5_1:3820551-3820570 Msa0711970:three_prime_UTR 35.0%
TGCAATATGTATTGCTTGGT+CGG - chr5_1:3820620-3820639 None:intergenic 35.0%
TGTATAGCCACCAAAACCTA+CGG + chr5_1:3816071-3816090 Msa0711970:five_prime_UTR 40.0%
GACTTTAGCAAGAACCACAT+TGG - chr5_1:3816240-3816259 None:intergenic 40.0%
TAGCAAGGTTATGAAGAACC+TGG - chr5_1:3816358-3816377 None:intergenic 40.0%
TAAGAGGTGAAGGTGAAGAA+GGG - chr5_1:3816418-3816437 None:intergenic 40.0%
TTAAGAGGTGAAGGTGAAGA+AGG - chr5_1:3816419-3816438 None:intergenic 40.0%
AAATCTTCTCCTAGAGGAAC+TGG + chr5_1:3816482-3816501 Msa0711970:CDS 40.0%
TTACTAAGTCCAGTTCCTCT+AGG - chr5_1:3816494-3816513 None:intergenic 40.0%
AGAGGAACTGGACTTAGTAA+TGG + chr5_1:3816494-3816513 Msa0711970:CDS 40.0%
CATTACCAGAAGGTGATGAA+GGG - chr5_1:3816538-3816557 None:intergenic 40.0%
ACATTACCAGAAGGTGATGA+AGG - chr5_1:3816539-3816558 None:intergenic 40.0%
! CATCACCTTCTGGTAATGTT+TGG + chr5_1:3816540-3816559 Msa0711970:CDS 40.0%
TGTGACCAAACATTACCAGA+AGG - chr5_1:3816548-3816567 None:intergenic 40.0%
!!! GTTCTTGTGCTTTTTCACCA+AGG + chr5_1:3816663-3816682 Msa0711970:CDS 40.0%
!! TGGTGTTGATGAAAGTGGAT+TGG + chr5_1:3816886-3816905 Msa0711970:CDS 40.0%
!! GGTGTTGATGAAAGTGGATT+GGG + chr5_1:3816887-3816906 Msa0711970:CDS 40.0%
!! GATGAAAGTGGATTGGGATT+TGG + chr5_1:3816893-3816912 Msa0711970:CDS 40.0%
CCTCTAGCAAAGTAAAGACA+TGG - chr5_1:3816926-3816945 None:intergenic 40.0%
CCATGTCTTTACTTTGCTAG+AGG + chr5_1:3816923-3816942 Msa0711970:CDS 40.0%
TGTTCCAATCCCTCAAACTT+GGG - chr5_1:3817028-3817047 None:intergenic 40.0%
TTGTTCCAATCCCTCAAACT+TGG - chr5_1:3817029-3817048 None:intergenic 40.0%
TGAAGAGTTCATGAGGTTCA+AGG + chr5_1:3817051-3817070 Msa0711970:CDS 40.0%
ATGTACTTGTCGTACGATAC+CGG - chr5_1:3817136-3817155 None:intergenic 40.0%
AGCAGCACAGTGATAATCAA+AGG + chr5_1:3817170-3817189 Msa0711970:CDS 40.0%
TATGTTACATTTCAGAGCCG+TGG + chr5_1:3817298-3817317 Msa0711970:intron 40.0%
GCAAGAAACTCATTCCTTTC+GGG - chr5_1:3817380-3817399 None:intergenic 40.0%
! GAGTTTCTTGCTATGGTTTC+TGG + chr5_1:3817389-3817408 Msa0711970:CDS 40.0%
! GTTTCTTGCTATGGTTTCTG+GGG + chr5_1:3817391-3817410 Msa0711970:CDS 40.0%
TCTTTGAATGTGCTTTCAGC+AGG - chr5_1:3817458-3817477 None:intergenic 40.0%
! AAGATGTTTCGGAGTACTTC+AGG + chr5_1:3817480-3817499 Msa0711970:CDS 40.0%
CATGATATATGTCTCCCATG+AGG + chr5_1:3818007-3818026 Msa0711970:intron 40.0%
AGAATCGTGGACATTTAAGC+AGG - chr5_1:3818279-3818298 None:intergenic 40.0%
AAGGGGAGAATCCAAATACA+CGG + chr5_1:3818364-3818383 Msa0711970:intron 40.0%
!! TGTTTGTTGTCGTTACCCTA+CGG + chr5_1:3818530-3818549 Msa0711970:intron 40.0%
TTTGTGAACCATAGGGTTTG+TGG + chr5_1:3818609-3818628 Msa0711970:intron 40.0%
GGTAAGGAATTCTCACATCT+TGG - chr5_1:3818940-3818959 None:intergenic 40.0%
GTTTGTCACCTTTGTCTTTC+CGG + chr5_1:3818979-3818998 Msa0711970:CDS 40.0%
AATATGACTCTCACTGTCTC+CGG - chr5_1:3819001-3819020 None:intergenic 40.0%
CGTGAGTCACATATGAAATG+GGG - chr5_1:3819037-3819056 None:intergenic 40.0%
CACGTGAGTCACATATGAAA+TGG - chr5_1:3819039-3819058 None:intergenic 40.0%
! ACTTTTCCCTTCTCCTTGTA+GGG - chr5_1:3819073-3819092 None:intergenic 40.0%
! AACTTTTCCCTTCTCCTTGT+AGG - chr5_1:3819074-3819093 None:intergenic 40.0%
!! TCTTTAGAGTCAAACGCAGA+GGG - chr5_1:3819245-3819264 None:intergenic 40.0%
!! TTCTTTAGAGTCAAACGCAG+AGG - chr5_1:3819246-3819265 None:intergenic 40.0%
!!! GAACCTTTTGATTTCCATCC+TGG + chr5_1:3819263-3819282 Msa0711970:CDS 40.0%
CGAGTAGAATAAAGAAGCCA+AGG - chr5_1:3819304-3819323 None:intergenic 40.0%
TCACCAAACCTATTTCATGC+AGG + chr5_1:3819413-3819432 Msa0711970:intron 40.0%
GTTCCTGCATGAAATAGGTT+TGG - chr5_1:3819419-3819438 None:intergenic 40.0%
AAGTCCTTGAACTCCAAGAA+AGG + chr5_1:3819510-3819529 Msa0711970:CDS 40.0%
!! AGTTGATGGGGAAAAACCAA+AGG - chr5_1:3819614-3819633 None:intergenic 40.0%
!! ACATGGCTATGAAGTTGATG+GGG - chr5_1:3819626-3819645 None:intergenic 40.0%
AAAGACCTGCATGGTTAACA+TGG - chr5_1:3819643-3819662 None:intergenic 40.0%
CTTTCTCCTGATAACATCCA+AGG + chr5_1:3819659-3819678 Msa0711970:CDS 40.0%
! CAGGTTAGTCCTGTATACTA+TGG + chr5_1:3819690-3819709 Msa0711970:intron 40.0%
!! TGGTGTAGTTCTAACCAACA+TGG + chr5_1:3819710-3819729 Msa0711970:intron 40.0%
TGCTGAGAGTGGGAATTTAA+AGG + chr5_1:3819878-3819897 Msa0711970:CDS 40.0%
AAGGATGTTGCAAAGTCTGA+AGG + chr5_1:3819897-3819916 Msa0711970:CDS 40.0%
!!! TAATCTCCAGCTGCTTTTGT+TGG - chr5_1:3820069-3820088 None:intergenic 40.0%
TGAATCGACAACATCTGCTT+CGG + chr5_1:3820161-3820180 Msa0711970:CDS 40.0%
AAATACAAGAGGCAAGCAAG+GGG + chr5_1:3820319-3820338 Msa0711970:three_prime_UTR 40.0%
GGAGGGGGATCATATTAATT+AGG + chr5_1:3820340-3820359 Msa0711970:three_prime_UTR 40.0%
!! ATGCTTCTCTAGGATGATCT+AGG - chr5_1:3820543-3820562 None:intergenic 40.0%
AGATCTTGTGTGAAATTGCG+CGG + chr5_1:3820843-3820862 Msa0711970:three_prime_UTR 40.0%
CTCTCTGACGCTTCAAAGAT+AGG + chr5_1:3815972-3815991 Msa0711970:five_prime_UTR 45.0%
! TTACCAGTAGCCGTAGGTTT+TGG - chr5_1:3816084-3816103 None:intergenic 45.0%
AAAACCTACGGCTACTGGTA+AGG + chr5_1:3816083-3816102 Msa0711970:five_prime_UTR 45.0%
TTTAGCATGTTGTCCTGACC+AGG + chr5_1:3816337-3816356 Msa0711970:CDS 45.0%
AGGTTATGAAGAACCTGGTC+AGG - chr5_1:3816353-3816372 None:intergenic 45.0%
GGGTCTTTACCCTAATAGCA+AGG - chr5_1:3816373-3816392 None:intergenic 45.0%
AAGGTGAAGAAGGGGTAGAT+AGG - chr5_1:3816409-3816428 None:intergenic 45.0%
AAGAGGTGAAGGTGAAGAAG+GGG - chr5_1:3816417-3816436 None:intergenic 45.0%
CCAATAGGGTTAAGAGGTGA+AGG - chr5_1:3816428-3816447 None:intergenic 45.0%
CCTTCACCTCTTAACCCTAT+TGG + chr5_1:3816425-3816444 Msa0711970:CDS 45.0%
!! GAGAATATCCAAGGTGCTGT+TGG + chr5_1:3816623-3816642 Msa0711970:CDS 45.0%
!! AATATCCAAGGTGCTGTTGG+TGG + chr5_1:3816626-3816645 Msa0711970:CDS 45.0%
GTTGATCCGCGTCTTGAAAT+GGG + chr5_1:3816776-3816795 Msa0711970:CDS 45.0%
!! TGTTGGTTCACCCAAGTTTG+AGG + chr5_1:3817015-3817034 Msa0711970:CDS 45.0%
! GTTGGTTCACCCAAGTTTGA+GGG + chr5_1:3817016-3817035 Msa0711970:CDS 45.0%
TTCACCCAAGTTTGAGGGAT+TGG + chr5_1:3817021-3817040 Msa0711970:CDS 45.0%
TGCTCAGCAGCATCAAAGAA+TGG + chr5_1:3817075-3817094 Msa0711970:CDS 45.0%
TCAGCAGCATCAAAGAATGG+TGG + chr5_1:3817078-3817097 Msa0711970:CDS 45.0%
GAATGTGCTTTCAGCAGGAA+AGG - chr5_1:3817453-3817472 None:intergenic 45.0%
!! TCTCTTTAAAGCGTGGAACC+TGG - chr5_1:3817647-3817666 None:intergenic 45.0%
CACAGGCAAAACCACTTTCA+TGG - chr5_1:3817708-3817727 None:intergenic 45.0%
!! TTCCAAGAAGCATCAGACCA+GGG - chr5_1:3817733-3817752 None:intergenic 45.0%
GGATAAACCTGTCTCCTCAT+GGG - chr5_1:3818024-3818043 None:intergenic 45.0%
AGGATAAACCTGTCTCCTCA+TGG - chr5_1:3818025-3818044 None:intergenic 45.0%
GCAATACTATGACTGCCGTA+GGG - chr5_1:3818548-3818567 None:intergenic 45.0%
AGCAATACTATGACTGCCGT+AGG - chr5_1:3818549-3818568 None:intergenic 45.0%
GGAATTCTCACATCTTGGAC+AGG - chr5_1:3818935-3818954 None:intergenic 45.0%
! AACATGCGCTTTTGCTGGTA+AGG - chr5_1:3818956-3818975 None:intergenic 45.0%
! TACCAGCAAAAGCGCATGTT+TGG + chr5_1:3818956-3818975 Msa0711970:CDS 45.0%
! ACCAGCAAAAGCGCATGTTT+GGG + chr5_1:3818957-3818976 Msa0711970:CDS 45.0%
TGTGCTTGTGAAACCCTACA+AGG + chr5_1:3819057-3819076 Msa0711970:CDS 45.0%
TGTGAAACCCTACAAGGAGA+AGG + chr5_1:3819063-3819082 Msa0711970:CDS 45.0%
GTGAAACCCTACAAGGAGAA+GGG + chr5_1:3819064-3819083 Msa0711970:CDS 45.0%
CAAATTGCTGCTGCTGATGT+TGG - chr5_1:3819193-3819212 None:intergenic 45.0%
ATCAGCAGCAGCAATTTGAG+AGG + chr5_1:3819195-3819214 Msa0711970:CDS 45.0%
TCAGCAGCAGCAATTTGAGA+GGG + chr5_1:3819196-3819215 Msa0711970:CDS 45.0%
AACGCAGAGGGACTTAAACA+TGG - chr5_1:3819233-3819252 None:intergenic 45.0%
AAAACTGAAGCAGCACGAGA+TGG - chr5_1:3819389-3819408 None:intergenic 45.0%
TCCTTGAACTCCAAGAAAGG+AGG + chr5_1:3819513-3819532 Msa0711970:CDS 45.0%
CATAGCCATGTTAACCATGC+AGG + chr5_1:3819635-3819654 Msa0711970:CDS 45.0%
TATCAGGAGAAAGACCTGCA+TGG - chr5_1:3819652-3819671 None:intergenic 45.0%
CTAAAGAACCAGCAGAAGTG+AGG - chr5_1:3819788-3819807 None:intergenic 45.0%
!! CTCACTTCTGCTGGTTCTTT+AGG + chr5_1:3819786-3819805 Msa0711970:CDS 45.0%
GTAGCAGCATCAATGCAAGA+TGG - chr5_1:3819852-3819871 None:intergenic 45.0%
! AAGTCTGAAGGCGTAGATCT+CGG + chr5_1:3819909-3819928 Msa0711970:CDS 45.0%
AGCAAAGAGACTGTCAGGAA+GGG - chr5_1:3820043-3820062 None:intergenic 45.0%
AAGCAAAGAGACTGTCAGGA+AGG - chr5_1:3820044-3820063 None:intergenic 45.0%
GTACTCTCATTAGCCACTTC+CGG - chr5_1:3820111-3820130 None:intergenic 45.0%
GAATCGACAACATCTGCTTC+GGG + chr5_1:3820162-3820181 Msa0711970:CDS 45.0%
TTGTGTGAAATTGCGCGGAT+AGG + chr5_1:3820848-3820867 Msa0711970:three_prime_UTR 45.0%
CATACCTTACCAGTAGCCGT+AGG - chr5_1:3816090-3816109 None:intergenic 50.0%
AGGAACCCTTCATCACCTTC+TGG + chr5_1:3816530-3816549 Msa0711970:CDS 50.0%
GTCGTCTAACGGCGATGATT+TGG + chr5_1:3816754-3816773 Msa0711970:CDS 50.0%
GGTTGATCCGCGTCTTGAAA+TGG + chr5_1:3816775-3816794 Msa0711970:CDS 50.0%
GGTGGTCAGAATTGGATCTC+TGG + chr5_1:3816803-3816822 Msa0711970:CDS 50.0%
!! GCAAATTCCGGTGCTGTTGT+TGG + chr5_1:3816998-3817017 Msa0711970:CDS 50.0%
ACAAGCCTAACTCTGCTTCG+CGG + chr5_1:3817414-3817433 Msa0711970:CDS 50.0%
!! ACGACTTGCTAATGCTGTGC+AGG + chr5_1:3817518-3817537 Msa0711970:intron 50.0%
GGTGTGCACAGTGAAAATCG+TGG - chr5_1:3817687-3817706 None:intergenic 50.0%
CACTGTGCACACCATGAAAG+TGG + chr5_1:3817694-3817713 Msa0711970:CDS 50.0%
!! CTTCCAAGAAGCATCAGACC+AGG - chr5_1:3817734-3817753 None:intergenic 50.0%
TGATGCTTCTTGGAAGCCCT+AGG + chr5_1:3817738-3817757 Msa0711970:intron 50.0%
GATGCTTCTTGGAAGCCCTA+GGG + chr5_1:3817739-3817758 Msa0711970:intron 50.0%
GGAGTCAGGATCAACATCAG+AGG - chr5_1:3817783-3817802 None:intergenic 50.0%
TATGTCTCCCATGAGGAGAC+AGG + chr5_1:3818014-3818033 Msa0711970:intron 50.0%
! ACCCAAACATGCGCTTTTGC+TGG - chr5_1:3818961-3818980 None:intergenic 50.0%
CACTGTCTCCGGAAAGACAA+AGG - chr5_1:3818990-3819009 None:intergenic 50.0%
CAGCAGCAGCAATTTGAGAG+GGG + chr5_1:3819197-3819216 Msa0711970:CDS 50.0%
! GCACGAGATGGTTGCTTTAG+AGG - chr5_1:3819377-3819396 None:intergenic 50.0%
GAGAAGGAAAATGGAGGAGC+AGG + chr5_1:3819472-3819491 Msa0711970:CDS 50.0%
GCCTCCTTTCTTGGAGTTCA+AGG - chr5_1:3819517-3819536 None:intergenic 50.0%
GACTCTTCAGCCTCCTTTCT+TGG - chr5_1:3819526-3819545 None:intergenic 50.0%
! TCTCTCTGTTGGTGCTCCTT+TGG + chr5_1:3819595-3819614 Msa0711970:CDS 50.0%
CTTTCCATTGCAGGCTACAG+TGG + chr5_1:3819759-3819778 Msa0711970:intron 50.0%
GGTGAAGCAAAGAGACTGTC+AGG - chr5_1:3820048-3820067 None:intergenic 50.0%
GCTTCACCAACAAAAGCAGC+TGG + chr5_1:3820060-3820079 Msa0711970:CDS 50.0%
TCCGTCTGATTTCTCTCCAC+CGG + chr5_1:3820089-3820108 Msa0711970:CDS 50.0%
TCCGGTGGAGAGAAATCAGA+CGG - chr5_1:3820093-3820112 None:intergenic 50.0%
TGATTTCTCTCCACCGGAAG+TGG + chr5_1:3820095-3820114 Msa0711970:CDS 50.0%
ATCTGCTTCGGGTGACAACA+TGG + chr5_1:3820173-3820192 Msa0711970:CDS 50.0%
!! CCAGTAGCCGTAGGTTTTGG+TGG - chr5_1:3816081-3816100 None:intergenic 55.0%
CCACCAAAACCTACGGCTAC+TGG + chr5_1:3816078-3816097 Msa0711970:five_prime_UTR 55.0%
CCAACGCCCATTTCAAGACG+CGG - chr5_1:3816785-3816804 None:intergenic 55.0%
!! CGTCTTGAAATGGGCGTTGG+TGG + chr5_1:3816785-3816804 Msa0711970:CDS 55.0%
!! TGGGCGTTGGTGGTCAGAAT+TGG + chr5_1:3816795-3816814 Msa0711970:CDS 55.0%
GGGTGAACCAACAACAGCAC+CGG - chr5_1:3817008-3817027 None:intergenic 55.0%
!! GCTGCATCACAACTTGCTGC+TGG + chr5_1:3817100-3817119 Msa0711970:CDS 55.0%
!! GCATCACAACTTGCTGCTGG+TGG + chr5_1:3817103-3817122 Msa0711970:CDS 55.0%
TGCTGCTGGTGGAACATCAC+CGG + chr5_1:3817114-3817133 Msa0711970:CDS 55.0%
ACATTTCAGAGCCGTGGCTG+CGG + chr5_1:3817304-3817323 Msa0711970:intron 55.0%
TCAACATTACTGGTCGGGGC+AGG + chr5_1:3817354-3817373 Msa0711970:CDS 55.0%
ATCTGCCGCGAAGCAGAGTT+AGG - chr5_1:3817422-3817441 None:intergenic 55.0%
CTCCCTGGTCTGATGCTTCT+TGG + chr5_1:3817728-3817747 Msa0711970:intron 55.0%
CTTGGAAGCCCTAGGGAAGA+TGG + chr5_1:3817746-3817765 Msa0711970:intron 55.0%
GATGTGCACGTGCAGAATCG+TGG - chr5_1:3818292-3818311 None:intergenic 55.0%
TCTGAGGGCCACAAACCCTA+TGG - chr5_1:3818620-3818639 None:intergenic 55.0%
TAGGGTTTGTGGCCCTCAGA+AGG + chr5_1:3818620-3818639 Msa0711970:intron 55.0%
CTACTGCTGCTGCTGAGAGT+GGG + chr5_1:3819868-3819887 Msa0711970:CDS 55.0%
! TGAAGGCGTAGATCTCGGCA+TGG + chr5_1:3819914-3819933 Msa0711970:CDS 55.0%
! GAAGGCGTAGATCTCGGCAT+GGG + chr5_1:3819915-3819934 Msa0711970:CDS 55.0%
AAGGCGTAGATCTCGGCATG+GGG + chr5_1:3819916-3819935 Msa0711970:CDS 55.0%
CTCTCATTAGCCACTTCCGG+TGG - chr5_1:3820108-3820127 None:intergenic 55.0%
TACAAGAGGCAAGCAAGGGG+AGG + chr5_1:3820322-3820341 Msa0711970:three_prime_UTR 55.0%
ACAAGAGGCAAGCAAGGGGA+GGG + chr5_1:3820323-3820342 Msa0711970:three_prime_UTR 55.0%
CACTGCCACCAACAGCACCT+TGG - chr5_1:3816634-3816653 None:intergenic 60.0%
!! CAAGGTGCTGTTGGTGGCAG+TGG + chr5_1:3816632-3816651 Msa0711970:CDS 60.0%
CCGCGTCTTGAAATGGGCGT+TGG + chr5_1:3816782-3816801 Msa0711970:CDS 60.0%
GCTGCGGCAGCATTTGCGAT+GGG + chr5_1:3817320-3817339 Msa0711970:CDS 60.0%
!! GTGGTTTTGCCTGTGCTCCC+TGG + chr5_1:3817713-3817732 Msa0711970:CDS 60.0%
! AGCATCAGACCAGGGAGCAC+AGG - chr5_1:3817725-3817744 None:intergenic 60.0%
!! CTGCGCTGGTGGTGGTGAAT+CGG - chr5_1:3819575-3819594 None:intergenic 60.0%
CAACAGAGAGACTGCGCTGG+TGG - chr5_1:3819586-3819605 None:intergenic 60.0%
CACCAGCGCAGTCTCTCTGT+TGG + chr5_1:3819584-3819603 Msa0711970:CDS 60.0%
CACCAACAGAGAGACTGCGC+TGG - chr5_1:3819589-3819608 None:intergenic 60.0%
GCTGCCACTGTAGCCTGCAA+TGG - chr5_1:3819766-3819785 None:intergenic 60.0%
AGTGGCAGCCTCACTTCTGC+TGG + chr5_1:3819777-3819796 Msa0711970:CDS 60.0%
! AGGTGCTGCATCTGAGCAGC+AGG + chr5_1:3819806-3819825 Msa0711970:CDS 60.0%
GCTACTGCTGCTGCTGAGAG+TGG + chr5_1:3819867-3819886 Msa0711970:CDS 60.0%
CAAGAGGCAAGCAAGGGGAG+GGG + chr5_1:3820324-3820343 Msa0711970:three_prime_UTR 60.0%
AAGAGGCAAGCAAGGGGAGG+GGG + chr5_1:3820325-3820344 Msa0711970:three_prime_UTR 60.0%
!! GCTGTTGGTGGCAGTGGTGC+TGG + chr5_1:3816638-3816657 Msa0711970:CDS 65.0%
!! GTTGGTGGCAGTGGTGCTGG+TGG + chr5_1:3816641-3816660 Msa0711970:CDS 65.0%
CGCAAATGCTGCCGCAGCCA+CGG - chr5_1:3817318-3817337 None:intergenic 65.0%
GGCTGCGGCAGCATTTGCGA+TGG + chr5_1:3817319-3817338 Msa0711970:CDS 65.0%
! CAGAGAGACTGCGCTGGTGG+TGG - chr5_1:3819583-3819602 None:intergenic 65.0%
CTGGTCGGGGCAGGCCCGAA+AGG + chr5_1:3817363-3817382 Msa0711970:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 3815878 3820872 3815878 ID=Msa0711970;Name=Msa0711970
chr5_1 mRNA 3815878 3820872 3815878 ID=Msa0711970-mRNA-1;Parent=Msa0711970;Name=Msa0711970-mRNA-1;_AED=0.14;_eAED=0.14;_QI=340|0.8|0.81|1|0.8|0.72|11|466|742
chr5_1 exon 3815878 3817191 3815878 ID=Msa0711970-mRNA-1:exon:1461;Parent=Msa0711970-mRNA-1
chr5_1 exon 3817313 3817501 3817313 ID=Msa0711970-mRNA-1:exon:1462;Parent=Msa0711970-mRNA-1
chr5_1 exon 3817648 3817734 3817648 ID=Msa0711970-mRNA-1:exon:1463;Parent=Msa0711970-mRNA-1
chr5_1 exon 3818367 3818459 3818367 ID=Msa0711970-mRNA-1:exon:1464;Parent=Msa0711970-mRNA-1
chr5_1 exon 3818922 3819101 3818922 ID=Msa0711970-mRNA-1:exon:1465;Parent=Msa0711970-mRNA-1
chr5_1 exon 3819184 3819284 3819184 ID=Msa0711970-mRNA-1:exon:1466;Parent=Msa0711970-mRNA-1
chr5_1 exon 3819435 3819692 3819435 ID=Msa0711970-mRNA-1:exon:1467;Parent=Msa0711970-mRNA-1
chr5_1 exon 3819772 3819937 3819772 ID=Msa0711970-mRNA-1:exon:1468;Parent=Msa0711970-mRNA-1
chr5_1 exon 3820026 3820223 3820026 ID=Msa0711970-mRNA-1:exon:1469;Parent=Msa0711970-mRNA-1
chr5_1 exon 3820312 3820362 3820312 ID=Msa0711970-mRNA-1:exon:1470;Parent=Msa0711970-mRNA-1
chr5_1 exon 3820475 3820872 3820475 ID=Msa0711970-mRNA-1:exon:1471;Parent=Msa0711970-mRNA-1
chr5_1 five_prime_UTR 3815878 3816217 3815878 ID=Msa0711970-mRNA-1:five_prime_utr;Parent=Msa0711970-mRNA-1
chr5_1 CDS 3816218 3817191 3816218 ID=Msa0711970-mRNA-1:cds;Parent=Msa0711970-mRNA-1
chr5_1 CDS 3817313 3817501 3817313 ID=Msa0711970-mRNA-1:cds;Parent=Msa0711970-mRNA-1
chr5_1 CDS 3817648 3817734 3817648 ID=Msa0711970-mRNA-1:cds;Parent=Msa0711970-mRNA-1
chr5_1 CDS 3818367 3818459 3818367 ID=Msa0711970-mRNA-1:cds;Parent=Msa0711970-mRNA-1
chr5_1 CDS 3818922 3819101 3818922 ID=Msa0711970-mRNA-1:cds;Parent=Msa0711970-mRNA-1
chr5_1 CDS 3819184 3819284 3819184 ID=Msa0711970-mRNA-1:cds;Parent=Msa0711970-mRNA-1
chr5_1 CDS 3819435 3819692 3819435 ID=Msa0711970-mRNA-1:cds;Parent=Msa0711970-mRNA-1
chr5_1 CDS 3819772 3819937 3819772 ID=Msa0711970-mRNA-1:cds;Parent=Msa0711970-mRNA-1
chr5_1 CDS 3820026 3820206 3820026 ID=Msa0711970-mRNA-1:cds;Parent=Msa0711970-mRNA-1
chr5_1 three_prime_UTR 3820207 3820223 3820207 ID=Msa0711970-mRNA-1:three_prime_utr;Parent=Msa0711970-mRNA-1
chr5_1 three_prime_UTR 3820312 3820362 3820312 ID=Msa0711970-mRNA-1:three_prime_utr;Parent=Msa0711970-mRNA-1
chr5_1 three_prime_UTR 3820475 3820872 3820475 ID=Msa0711970-mRNA-1:three_prime_utr;Parent=Msa0711970-mRNA-1
Gene Sequence

>Msa0711970

ATGGGTTCTTATGAAGCAACCAATGTGGTTCTTGCTAAAGTCAAAAACTTTGACCCTGAAAATGCTTCAAAAATCATGGGTTTTCTTCTCATGAACCTTGAAGAATATGAACTTGTTCGTTTAGCATGTTGTCCTGACCAGGTTCTTCATAACCTTGCTATTAGGGTAAAGACCCATTTGGGTATGAACCTATCTACCCCTTCTTCACCTTCACCTCTTAACCCTATTGGAAGAATCACTTCATCTTCCAATAACCCTTTTTCAAAATCTTCTCCTAGAGGAACTGGACTTAGTAATGGTTTTGACTTCAATAGGAACCCTTCATCACCTTCTGGTAATGTTTGGTCACAACCCTCTTTTCCAAAGAACCCTATTAGTCCAAAGTTTAATCCTTTAATGTCTTATGAGAATATCCAAGGTGCTGTTGGTGGCAGTGGTGCTGGTGGTTCTTGTGCTTTTTCACCAAGGGTTAATAATGGTGATTATGATTTTGTTGATGAACAACAGCTGAATGAGTGTTTTCCTTTTCTCAATGAGTCGTCTAACGGCGATGATTTGGTTGATCCGCGTCTTGAAATGGGCGTTGGTGGTCAGAATTGGATCTCTGGTAACAATGGCGATGCTCATAATATTCATAAGAGGAGTTTTTCTGCAAATGATGCTAGTTTTGGTGTTGATGAAAGTGGATTGGGATTTGGTTTTAAGCCATGTCTTTACTTTGCTAGAGGGTTTTGTAAAAATGGTTCCAATTGTAAGTTTGTTCATGGTGATTCGATTGATGCAAATTCCGGTGCTGTTGTTGGTTCACCCAAGTTTGAGGGATTGGAACAACATGAAGAGTTCATGAGGTTCAAGGCTGCTCAGCAGCATCAAAGAATGGTGGCTGCATCACAACTTGCTGCTGGTGGAACATCACCGGTATCGTACGACAAGTACATTGATCTTCTGATGCAGCAGCACAGTGATAATCAAAGAGCCGTGGCTGCGGCAGCATTTGCGATGGGTGAAGAATATTTCAACATTACTGGTCGGGGCAGGCCCGAAAGGAATGAGTTTCTTGCTATGGTTTCTGGGGACAAGCCTAACTCTGCTTCGCGGCAGATTTACTTGACCTTTCCTGCTGAAAGCACATTCAAAGATGAAGATGTTTCGGAGTACTTCAGGTTCCACGCTTTAAAGAGAATATTTGCGGTAATTTTCCACGATTTTCACTGTGCACACCATGAAAGTGGTTTTGCCTGTGCTCCCTGGGGAGAATCCAAATACACGGAAAATCTATTTCCAACTGAAAGAACATTGGTTGTTGTAGTTCATGTTAAGAAATTCTACGTGAAGTATTCCATCAAATTTGGACCTGTCCAAGATGTGAGAATTCCTTACCAGCAAAAGCGCATGTTTGGGTTTGTCACCTTTGTCTTTCCGGAGACAGTGAGAGTCATATTATCGAAAGGAAATCCCCATTTCATATGTGACTCACGTGTGCTTGTGAAACCCTACAAGGAGAAGGGAAAAGTTCCTGACAAGAGACACCAACATCAGCAGCAGCAATTTGAGAGGGGAGATTTTTCGCCATGTTTAAGTCCCTCTGCGTTTGACTCTAAAGAACCTTTTGATTTCCATCCTGGAACAAGAATGCTATACAATCCACATGATATCTTATTGAGAAGGAAAATGGAGGAGCAGGCTGCTGACTTTCAGCAAGTCCTTGAACTCCAAGAAAGGAGGCTGAAGAGTCTGCAGCTTCCAGATTTCAAGAATAATCCGATTCACCACCACCAGCGCAGTCTCTCTGTTGGTGCTCCTTTGGTTTTTCCCCATCAACTTCATAGCCATGTTAACCATGCAGGTCTTTCTCCTGATAACATCCAAGGAGATTTTACAGGCTACAGTGGCAGCCTCACTTCTGCTGGTTCTTTAGGTGCTGCATCTGAGCAGCAGGCGCTACACAAAGAAGCTGATCCATCTTGCATTGATGCTGCTACTGCTGCTGCTGAGAGTGGGAATTTAAAGGATGTTGCAAAGTCTGAAGGCGTAGATCTCGGCATGGGAAATGTGGAGCACACCCTTCCTGACAGTCTCTTTGCTTCACCAACAAAAGCAGCTGGAGATTATCCGTCTGATTTCTCTCCACCGGAAGTGGCTAATGAGAGTACTGCATTTTCGACTAGCTTGTCTCAGAAGTTTGAATCGACAACATCTGCTTCGGGTGACAACATGGCTTCCGTTTAA
Protein sequence

>Msa0711970

MGSYEATNVVLAKVKNFDPENASKIMGFLLMNLEEYELVRLACCPDQVLHNLAIRVKTHLGMNLSTPSSPSPLNPIGRITSSSNNPFSKSSPRGTGLSNGFDFNRNPSSPSGNVWSQPSFPKNPISPKFNPLMSYENIQGAVGGSGAGGSCAFSPRVNNGDYDFVDEQQLNECFPFLNESSNGDDLVDPRLEMGVGGQNWISGNNGDAHNIHKRSFSANDASFGVDESGLGFGFKPCLYFARGFCKNGSNCKFVHGDSIDANSGAVVGSPKFEGLEQHEEFMRFKAAQQHQRMVAASQLAAGGTSPVSYDKYIDLLMQQHSDNQRAVAAAAFAMGEEYFNITGRGRPERNEFLAMVSGDKPNSASRQIYLTFPAESTFKDEDVSEYFRFHALKRIFAVIFHDFHCAHHESGFACAPWGESKYTENLFPTERTLVVVVHVKKFYVKYSIKFGPVQDVRIPYQQKRMFGFVTFVFPETVRVILSKGNPHFICDSRVLVKPYKEKGKVPDKRHQHQQQQFERGDFSPCLSPSAFDSKEPFDFHPGTRMLYNPHDILLRRKMEEQAADFQQVLELQERRLKSLQLPDFKNNPIHHHQRSLSVGAPLVFPHQLHSHVNHAGLSPDNIQGDFTGYSGSLTSAGSLGAASEQQALHKEADPSCIDAATAAAESGNLKDVAKSEGVDLGMGNVEHTLPDSLFASPTKAAGDYPSDFSPPEVANESTAFSTSLSQKFESTTSASGDNMASV*