Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794810 | XP_024640138.1 | 92.748 | 717 | 14 | 3 | 1 | 711 | 1 | 685 | 0.0 | 1344 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794810 | sp|Q94CJ8|C3H55_ARATH | 41.536 | 703 | 305 | 30 | 1 | 678 | 1 | 622 | 3.47e-127 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794810 | G7K989 | 92.748 | 717 | 14 | 3 | 1 | 711 | 1 | 685 | 0.0 | 1344 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0794810 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa0794810 | 0.802856 | 4.598811e-49 | -8.615850e-47 |
| Msa0008110 | Msa0794810 | 0.844316 | 8.152919e-59 | -8.615850e-47 |
| Msa0043230 | Msa0794810 | 0.808040 | 3.765282e-50 | -8.615850e-47 |
| Msa0090400 | Msa0794810 | 0.815034 | 1.136946e-51 | -8.615850e-47 |
| Msa0664060 | Msa0794810 | 0.803396 | 3.556852e-49 | -8.615850e-47 |
| Msa0689520 | Msa0794810 | 0.840706 | 7.396417e-58 | -8.615850e-47 |
| Msa0711970 | Msa0794810 | 0.879944 | 8.240512e-70 | -8.615850e-47 |
| Msa0749740 | Msa0794810 | 0.883983 | 2.826823e-71 | -8.615850e-47 |
| Msa0749770 | Msa0794810 | 0.873485 | 1.417747e-67 | -8.615850e-47 |
| Msa0750090 | Msa0794810 | 0.877898 | 4.341650e-69 | -8.615850e-47 |
| Msa0794810 | Msa0829800 | 0.802688 | 4.982572e-49 | -8.615850e-47 |
| Msa0794810 | Msa1018690 | 0.854260 | 1.385939e-61 | -8.615850e-47 |
| Msa0794810 | Msa1020560 | 0.826262 | 2.986977e-54 | -8.615850e-47 |
| Msa0794810 | Msa1097980 | 0.829040 | 6.428059e-55 | -8.615850e-47 |
| Msa0794810 | Msa1113340 | 0.817861 | 2.647158e-52 | -8.615850e-47 |
| Msa0794810 | Msa1223470 | 0.816335 | 5.832441e-52 | -8.615850e-47 |
| Msa0794810 | Msa1268670 | 0.800823 | 1.202747e-48 | -8.615850e-47 |
| Msa0794810 | Msa1269480 | 0.821919 | 3.125249e-53 | -8.615850e-47 |
| Msa0794810 | Msa1369550 | 0.823536 | 1.313740e-53 | -8.615850e-47 |
| Msa0794810 | Msa1391770 | 0.808180 | 3.515824e-50 | -8.615850e-47 |
| Msa0794810 | Msa1422420 | 0.809688 | 1.671692e-50 | -8.615850e-47 |
| Msa0794810 | Msa1464640 | 0.815888 | 7.340616e-52 | -8.615850e-47 |
| Msa0137880 | Msa0794810 | 0.818158 | 2.267791e-52 | -8.615850e-47 |
| Msa0149370 | Msa0794810 | 0.837950 | 3.841403e-57 | -8.615850e-47 |
| Msa0225460 | Msa0794810 | 0.812899 | 3.361118e-51 | -8.615850e-47 |
| Msa0225680 | Msa0794810 | 0.809556 | 1.784719e-50 | -8.615850e-47 |
| Msa0232690 | Msa0794810 | 0.802746 | 4.847264e-49 | -8.615850e-47 |
| Msa0234600 | Msa0794810 | 0.805443 | 1.331745e-49 | -8.615850e-47 |
| Msa0419700 | Msa0794810 | 0.801181 | 1.016424e-48 | -8.615850e-47 |
| Msa0442830 | Msa0794810 | 0.804699 | 1.906078e-49 | -8.615850e-47 |
| Msa0462500 | Msa0794810 | 0.816259 | 6.063885e-52 | -8.615850e-47 |
| Msa0267110 | Msa0794810 | 0.809599 | 1.747317e-50 | -8.615850e-47 |
| Msa0288890 | Msa0794810 | 0.823224 | 1.554189e-53 | -8.615850e-47 |
| Msa0307770 | Msa0794810 | 0.801183 | 1.015219e-48 | -8.615850e-47 |
| Msa0313410 | Msa0794810 | 0.818841 | 1.588025e-52 | -8.615850e-47 |
| Msa0314340 | Msa0794810 | 0.832141 | 1.119751e-55 | -8.615850e-47 |
| Msa0338510 | Msa0794810 | 0.806552 | 7.782452e-50 | -8.615850e-47 |
| Msa0349710 | Msa0794810 | 0.800032 | 1.742965e-48 | -8.615850e-47 |
| Msa0511750 | Msa0794810 | 0.800314 | 1.527229e-48 | -8.615850e-47 |
| Msa0527860 | Msa0794810 | 0.802294 | 6.005437e-49 | -8.615850e-47 |
| Msa0575570 | Msa0794810 | 0.814863 | 1.240245e-51 | -8.615850e-47 |
| Msa0582450 | Msa0794810 | 0.814772 | 1.299374e-51 | -8.615850e-47 |
| Msa0586190 | Msa0794810 | 0.816974 | 4.193148e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794810 | MtrunA17_Chr5g0396381 | 92.748 | 717 | 14 | 3 | 1 | 711 | 1 | 685 | 0.0 | 1344 |
| Msa0794810 | MtrunA17_Chr3g0090551 | 40.909 | 726 | 337 | 24 | 1 | 701 | 1 | 659 | 9.95e-130 | 400 |
| Msa0794810 | MtrunA17_Chr4g0020571 | 42.328 | 567 | 247 | 20 | 158 | 706 | 128 | 632 | 1.14e-108 | 344 |
| Msa0794810 | MtrunA17_Chr5g0445571 | 31.818 | 418 | 188 | 13 | 178 | 550 | 111 | 476 | 5.47e-43 | 163 |
| Msa0794810 | MtrunA17_Chr3g0101151 | 33.523 | 352 | 144 | 11 | 232 | 550 | 159 | 453 | 2.84e-39 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0794810 | AT5G12440.4 | 41.536 | 703 | 305 | 30 | 1 | 678 | 1 | 622 | 3.52e-128 | 395 |
| Msa0794810 | AT5G12440.11 | 41.536 | 703 | 305 | 30 | 1 | 678 | 1 | 622 | 3.52e-128 | 395 |
| Msa0794810 | AT5G12440.12 | 41.536 | 703 | 305 | 30 | 1 | 678 | 1 | 622 | 3.52e-128 | 395 |
| Msa0794810 | AT5G12440.7 | 41.536 | 703 | 305 | 30 | 1 | 678 | 1 | 622 | 3.52e-128 | 395 |
| Msa0794810 | AT5G12440.1 | 41.536 | 703 | 305 | 30 | 1 | 678 | 1 | 622 | 3.52e-128 | 395 |
| Msa0794810 | AT5G12440.9 | 41.536 | 703 | 305 | 30 | 1 | 678 | 1 | 622 | 3.52e-128 | 395 |
| Msa0794810 | AT5G12440.2 | 41.536 | 703 | 305 | 30 | 1 | 678 | 1 | 622 | 3.52e-128 | 395 |
| Msa0794810 | AT5G12440.3 | 41.512 | 701 | 304 | 30 | 1 | 676 | 32 | 651 | 8.79e-128 | 395 |
| Msa0794810 | AT5G12440.10 | 41.512 | 701 | 304 | 30 | 1 | 676 | 32 | 651 | 8.79e-128 | 395 |
| Msa0794810 | AT5G12440.8 | 41.512 | 701 | 304 | 30 | 1 | 676 | 32 | 651 | 8.79e-128 | 395 |
| Msa0794810 | AT5G12440.5 | 41.512 | 701 | 304 | 30 | 1 | 676 | 32 | 651 | 8.79e-128 | 395 |
| Msa0794810 | AT5G12440.6 | 41.512 | 701 | 304 | 30 | 1 | 676 | 32 | 651 | 8.79e-128 | 395 |
| Msa0794810 | AT3G21100.2 | 41.935 | 682 | 262 | 28 | 7 | 670 | 7 | 572 | 1.67e-125 | 386 |
| Msa0794810 | AT3G21100.1 | 41.935 | 682 | 262 | 28 | 7 | 670 | 7 | 572 | 1.67e-125 | 386 |
| Msa0794810 | AT3G21100.4 | 41.728 | 683 | 263 | 28 | 7 | 670 | 7 | 573 | 7.88e-125 | 385 |
| Msa0794810 | AT3G21100.3 | 41.728 | 683 | 263 | 28 | 7 | 670 | 7 | 573 | 7.88e-125 | 385 |
| Msa0794810 | AT3G51950.1 | 39.364 | 503 | 178 | 20 | 210 | 699 | 126 | 514 | 5.37e-73 | 246 |
| Msa0794810 | AT3G51950.1 | 41.489 | 94 | 49 | 3 | 1 | 92 | 1 | 90 | 1.61e-11 | 67.8 |
| Msa0794810 | AT3G51950.3 | 39.364 | 503 | 178 | 20 | 210 | 699 | 126 | 514 | 5.37e-73 | 246 |
| Msa0794810 | AT3G51950.3 | 41.489 | 94 | 49 | 3 | 1 | 92 | 1 | 90 | 1.61e-11 | 67.8 |
| Msa0794810 | AT3G51950.2 | 39.364 | 503 | 178 | 20 | 210 | 699 | 126 | 514 | 5.37e-73 | 246 |
| Msa0794810 | AT3G51950.2 | 41.489 | 94 | 49 | 3 | 1 | 92 | 1 | 90 | 1.61e-11 | 67.8 |
| Msa0794810 | AT3G51950.4 | 39.364 | 503 | 178 | 20 | 210 | 699 | 126 | 514 | 5.37e-73 | 246 |
| Msa0794810 | AT3G51950.4 | 41.489 | 94 | 49 | 3 | 1 | 92 | 1 | 90 | 1.61e-11 | 67.8 |
| Msa0794810 | AT1G51520.2 | 32.939 | 677 | 261 | 26 | 7 | 676 | 7 | 497 | 2.96e-70 | 238 |
| Msa0794810 | AT1G51520.1 | 35.543 | 543 | 210 | 21 | 7 | 544 | 7 | 414 | 6.82e-68 | 229 |
| Msa0794810 | AT3G63450.6 | 43.852 | 244 | 73 | 6 | 329 | 572 | 16 | 195 | 1.85e-47 | 170 |
| Msa0794810 | AT3G63450.3 | 43.701 | 254 | 78 | 7 | 319 | 572 | 117 | 305 | 3.12e-47 | 172 |
| Msa0794810 | AT3G63450.4 | 43.701 | 254 | 78 | 7 | 319 | 572 | 117 | 305 | 3.12e-47 | 172 |
| Msa0794810 | AT3G63450.5 | 43.701 | 254 | 78 | 7 | 319 | 572 | 117 | 305 | 3.12e-47 | 172 |
| Msa0794810 | AT3G63450.2 | 43.701 | 254 | 76 | 7 | 319 | 572 | 117 | 303 | 3.47e-47 | 172 |
| Msa0794810 | AT3G63450.1 | 43.701 | 254 | 76 | 7 | 319 | 572 | 117 | 303 | 3.47e-47 | 172 |
| Msa0794810 | AT3G63450.7 | 43.701 | 254 | 78 | 7 | 319 | 572 | 117 | 305 | 4.63e-47 | 171 |
| Msa0794810 | AT2G05160.2 | 33.813 | 278 | 109 | 8 | 232 | 473 | 157 | 395 | 8.00e-32 | 130 |
| Msa0794810 | AT2G05160.1 | 33.813 | 278 | 109 | 8 | 232 | 473 | 157 | 395 | 8.00e-32 | 130 |
| Msa0794810 | AT2G05160.3 | 33.813 | 278 | 109 | 8 | 232 | 473 | 157 | 395 | 1.16e-31 | 129 |
| Msa0794810 | AT3G52980.1 | 32.661 | 248 | 92 | 11 | 232 | 453 | 165 | 363 | 8.18e-21 | 95.5 |
Find 224 sgRNAs with CRISPR-Local
Find 360 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTTTCTTGCTATGGTTTC+TGG | 0.060082 | 5_3:+6708267 | Msa0794810:CDS |
| GACTCTTCAGCCTCCTTTCT+TGG | 0.133175 | 5_3:-6710403 | None:intergenic |
| GTTTGTCACCTTTGTCTTTC+CGG | 0.179944 | 5_3:+6709859 | Msa0794810:CDS |
| CTCACTTCTGCTGGTTCTTT+AGG | 0.186781 | 5_3:+6710666 | Msa0794810:CDS |
| GGATTAAACTTTGGACTAAT+AGG | 0.200781 | 5_3:-6707465 | None:intergenic |
| TTTGGACTAATAGGGTTCTT+TGG | 0.231605 | 5_3:-6707456 | None:intergenic |
| CTATGATGAATAACATAAAA+TGG | 0.239332 | 5_3:-6711581 | None:intergenic |
| TCTTCATAACCTTGCTATTA+GGG | 0.243813 | 5_3:+6707239 | Msa0794810:CDS |
| GCAAGAAACTCATTCCTTTC+GGG | 0.247828 | 5_3:-6708255 | None:intergenic |
| CCTTCACCTCTTAACCCTAT+TGG | 0.270082 | 5_3:+6707303 | Msa0794810:CDS |
| TTCTTCATAACCTTGCTATT+AGG | 0.270313 | 5_3:+6707238 | Msa0794810:CDS |
| GCCTCCTTTCTTGGAGTTCA+AGG | 0.288088 | 5_3:-6710394 | None:intergenic |
| GGTTGATCCGCGTCTTGAAA+TGG | 0.288113 | 5_3:+6707653 | Msa0794810:CDS |
| GAAGAATATTTCAACATTAC+TGG | 0.303045 | 5_3:+6708222 | Msa0794810:CDS |
| ATATTCTCATAAGACATTAA+AGG | 0.311072 | 5_3:-6707486 | None:intergenic |
| TATCTTATTGAGAAGGAAAA+TGG | 0.311434 | 5_3:+6710343 | Msa0794810:CDS |
| TCTCTCTGTTGGTGCTCCTT+TGG | 0.323983 | 5_3:+6710475 | Msa0794810:CDS |
| ATCGGATTATTCTTGAAATC+TGG | 0.325085 | 5_3:-6710434 | None:intergenic |
| AGACAAAAGCAAAAGAAAAT+AGG | 0.326156 | 5_3:-6711678 | None:intergenic |
| TCTGCAAATGATGCTAGTTT+TGG | 0.328687 | 5_3:+6707744 | Msa0794810:CDS |
| GCTGTTGGTGGCAGTGGTGC+TGG | 0.330637 | 5_3:+6707516 | Msa0794810:CDS |
| CATCACCTTCTGGTAATGTT+TGG | 0.334098 | 5_3:+6707418 | Msa0794810:CDS |
| AGCAAGAAACTCATTCCTTT+CGG | 0.335824 | 5_3:-6708256 | None:intergenic |
| TACCAGCAAAAGCGCATGTT+TGG | 0.336745 | 5_3:+6709836 | Msa0794810:CDS |
| TGCTGAGAGTGGGAATTTAA+AGG | 0.339269 | 5_3:+6710758 | Msa0794810:CDS |
| GATTAAACTTTGGACTAATA+GGG | 0.340959 | 5_3:-6707464 | None:intergenic |
| AAGATGTTTCGGAGTACTTC+AGG | 0.343875 | 5_3:+6708358 | Msa0794810:CDS |
| GTCGTCTAACGGCGATGATT+TGG | 0.347901 | 5_3:+6707632 | Msa0794810:CDS |
| TTACCAGTAGCCGTAGGTTT+TGG | 0.348499 | 5_3:-6706959 | None:intergenic |
| AGTTTCTTGCTATGGTTTCT+GGG | 0.349367 | 5_3:+6708268 | Msa0794810:CDS |
| TTTAAGTTCTTTACAATTCA+AGG | 0.357372 | 5_3:+6711082 | Msa0794810:exon |
| AGAATATGAACTTGTTCGTT+TGG | 0.358251 | 5_3:+6707197 | Msa0794810:CDS |
| GATTCAATTGATGCAAATTC+TGG | 0.360789 | 5_3:+6707864 | Msa0794810:CDS |
| GATGAAGTGATTCTTCCAAT+AGG | 0.362935 | 5_3:-6707318 | None:intergenic |
| CACGTGAGTCACATATGAAA+TGG | 0.366446 | 5_3:-6709916 | None:intergenic |
| AAATCTCCTTGGATGTTATC+AGG | 0.366797 | 5_3:-6710545 | None:intergenic |
| GATGAAAGTGGATTGGGATT+TGG | 0.371765 | 5_3:+6707771 | Msa0794810:CDS |
| TTCACCCAAGTTTGAGGGAT+TGG | 0.382468 | 5_3:+6707899 | Msa0794810:CDS |
| ATTCAAAGATGAAGATGTTT+CGG | 0.383022 | 5_3:+6708347 | Msa0794810:CDS |
| AATAATTTGTTGTCTCAGAT+TGG | 0.396338 | 5_3:-6711616 | None:intergenic |
| ACCATGAACAAACTTACAAT+TGG | 0.396580 | 5_3:-6707841 | None:intergenic |
| CTCTCTGACGCTTCAAAGAT+AGG | 0.396969 | 5_3:+6706848 | Msa0794810:five_prime_UTR |
| GACATTAAAGGATTAAACTT+TGG | 0.397652 | 5_3:-6707474 | None:intergenic |
| AAATCTTCTCCTAGAGGAAC+TGG | 0.399520 | 5_3:+6707360 | Msa0794810:CDS |
| TATTAGGGTAAAGACCCATT+TGG | 0.399912 | 5_3:+6707254 | Msa0794810:CDS |
| GAACAAGTTCATATTCTTCA+AGG | 0.400230 | 5_3:-6707191 | None:intergenic |
| AGATCCACACTACAAAGAAT+TGG | 0.402875 | 5_3:-6706814 | None:intergenic |
| CGCTTTAAAGAGAATATTTG+CGG | 0.404246 | 5_3:+6708532 | Msa0794810:CDS |
| TGAATCGACAACATCTGCTT+CGG | 0.405313 | 5_3:+6711041 | Msa0794810:CDS |
| AGGAACCCTTCATCACCTTC+TGG | 0.405702 | 5_3:+6707408 | Msa0794810:CDS |
| TCCAATTGTAAGTTTGTTCA+TGG | 0.406070 | 5_3:+6707840 | Msa0794810:CDS |
| GTTGATCCGCGTCTTGAAAT+GGG | 0.407371 | 5_3:+6707654 | Msa0794810:CDS |
| GCAAATTCTGGTGCTGTTGT+TGG | 0.413072 | 5_3:+6707876 | Msa0794810:CDS |
| TGGGCGTTGGTGGTCAGAAT+TGG | 0.414377 | 5_3:+6707673 | Msa0794810:CDS |
| TTAAGAGGTGAAGGTGAAGA+AGG | 0.415332 | 5_3:-6707294 | None:intergenic |
| ATTAGGGTAAAGACCCATTT+GGG | 0.415903 | 5_3:+6707255 | Msa0794810:CDS |
| GTACTCTCATTAGCCACTTC+CGG | 0.418314 | 5_3:-6710988 | None:intergenic |
| ATGCTTCTCTAGGATGATCT+AGG | 0.420612 | 5_3:-6711422 | None:intergenic |
| ATATTTCAACATTACTGGTC+GGG | 0.426560 | 5_3:+6708227 | Msa0794810:CDS |
| CGCAAATGCTGCCGCAGCCA+CGG | 0.428719 | 5_3:-6708193 | None:intergenic |
| TGAATTGTAAAGAACTTAAA+CGG | 0.431400 | 5_3:-6711079 | None:intergenic |
| GAATCGACAACATCTGCTTC+GGG | 0.431778 | 5_3:+6711042 | Msa0794810:CDS |
| TTGTTCCAATCCCTCAAACT+TGG | 0.434886 | 5_3:-6707904 | None:intergenic |
| ACGTGAGTCACATATGAAAT+GGG | 0.436440 | 5_3:-6709915 | None:intergenic |
| GAGTAAAGGGTATCAAGAAA+TGG | 0.437128 | 5_3:-6707006 | None:intergenic |
| CAAGGTGCTGTTGGTGGCAG+TGG | 0.437766 | 5_3:+6707510 | Msa0794810:CDS |
| ATGAAGTGATTCTTCCAATA+GGG | 0.438078 | 5_3:-6707317 | None:intergenic |
| CAAATTGCTGCTGCTGATGT+TGG | 0.441947 | 5_3:-6710070 | None:intergenic |
| TGTTGGTTCACCCAAGTTTG+AGG | 0.444572 | 5_3:+6707893 | Msa0794810:CDS |
| CACTGTGCACACCATGAAAG+TGG | 0.444602 | 5_3:+6708572 | Msa0794810:CDS |
| GGTGTTGATGAAAGTGGATT+GGG | 0.445623 | 5_3:+6707765 | Msa0794810:CDS |
| AGCATCAGACCAGGGAGCAC+AGG | 0.445794 | 5_3:-6708600 | None:intergenic |
| ATTCTTCCAATAGGGTTAAG+AGG | 0.447622 | 5_3:-6707309 | None:intergenic |
| ACCAGCAAAAGCGCATGTTT+GGG | 0.448689 | 5_3:+6709837 | Msa0794810:CDS |
| GTTGGTTCACCCAAGTTTGA+GGG | 0.449991 | 5_3:+6707894 | Msa0794810:CDS |
| AAGAGGCAAGCAAGGGGAGG+GGG | 0.450881 | 5_3:+6711205 | Msa0794810:three_prime_UTR |
| AATGCTTGAAAGAGAGTAAA+GGG | 0.455379 | 5_3:-6707019 | None:intergenic |
| TTTGGCATGTTGTCCTGACC+AGG | 0.455687 | 5_3:+6707215 | Msa0794810:CDS |
| TCTTTGAATGTGCTTTCAGC+AGG | 0.457800 | 5_3:-6708333 | None:intergenic |
| TGGTGTTGATGAAAGTGGAT+TGG | 0.458084 | 5_3:+6707764 | Msa0794810:CDS |
| GGTAAGGAATTCTCACATCT+TGG | 0.459599 | 5_3:-6709817 | None:intergenic |
| GCTGCATCACAACTTGCTGC+TGG | 0.462022 | 5_3:+6707978 | Msa0794810:CDS |
| TAGATAGGTTCATACCCAAA+TGG | 0.462403 | 5_3:-6707269 | None:intergenic |
| CGTCTTGAAATGGGCGTTGG+TGG | 0.465802 | 5_3:+6707663 | Msa0794810:CDS |
| TATGATGAATAACATAAAAT+GGG | 0.467432 | 5_3:-6711580 | None:intergenic |
| TAAGAGGTGAAGGTGAAGAA+GGG | 0.469413 | 5_3:-6707293 | None:intergenic |
| TGATTTCTCTCCACCGGAAG+TGG | 0.471635 | 5_3:+6710975 | Msa0794810:CDS |
| AATAGGGTTCTTTGGAAAAG+AGG | 0.473814 | 5_3:-6707448 | None:intergenic |
| ATCTGCCGCGAAGCCGAGTT+AGG | 0.473872 | 5_3:-6708297 | None:intergenic |
| CACAGGCAAAACCACTTTCA+TGG | 0.474335 | 5_3:-6708583 | None:intergenic |
| AAGGAATGAGTTTCTTGCTA+TGG | 0.474746 | 5_3:+6708260 | Msa0794810:CDS |
| GCTACTGCTGCTGCTGAGAG+TGG | 0.476207 | 5_3:+6710747 | Msa0794810:CDS |
| AAGGTGAAGAAGGGGTAGAT+AGG | 0.478323 | 5_3:-6707284 | None:intergenic |
| AGTGGCAGCCTCACTTCTGC+TGG | 0.479574 | 5_3:+6710657 | Msa0794810:CDS |
| AGGTTATGAAGAACCTGGTC+AGG | 0.480573 | 5_3:-6707228 | None:intergenic |
| CCACCAAAACCTACGGCTAC+TGG | 0.483036 | 5_3:+6706956 | Msa0794810:five_prime_UTR |
| GAGAAGGAAAATGGAGGAGC+AGG | 0.484754 | 5_3:+6710352 | Msa0794810:CDS |
| CTAGAGAAGCATCAAAACTA+AGG | 0.485524 | 5_3:+6711433 | Msa0794810:three_prime_UTR |
| CTGCGCTGGTGGTGGTGAAT+CGG | 0.486467 | 5_3:-6710452 | None:intergenic |
| GGTGAAGCAAAGAGACTGTC+AGG | 0.486964 | 5_3:-6710925 | None:intergenic |
| AAGATGTCAACTTACTTGTC+AGG | 0.488252 | 5_3:-6709974 | None:intergenic |
| TCCGTCTGATTTCTCTCCAC+CGG | 0.488582 | 5_3:+6710969 | Msa0794810:CDS |
| AGGTGCTGCATCTGAGCAGC+AGG | 0.492634 | 5_3:+6710686 | Msa0794810:CDS |
| AGAAAATAGGTACATAATGA+TGG | 0.493862 | 5_3:-6711665 | None:intergenic |
| ATGTACTTGTCGTACGATAC+CGG | 0.495797 | 5_3:-6708011 | None:intergenic |
| ACAAGAGGCAAGCAAGGGGA+GGG | 0.496163 | 5_3:+6711203 | Msa0794810:three_prime_UTR |
| GAGAAATTTGATTACCAGGA+TGG | 0.500480 | 5_3:-6710157 | None:intergenic |
| TTACCAGGATGGAAATCAAA+AGG | 0.503183 | 5_3:-6710146 | None:intergenic |
| GCTTCACCAACAAAAGCAGC+TGG | 0.504326 | 5_3:+6710940 | Msa0794810:CDS |
| CAAGAGGCAAGCAAGGGGAG+GGG | 0.506271 | 5_3:+6711204 | Msa0794810:three_prime_UTR |
| ACTAACCTGTAAAATCTCCT+TGG | 0.506306 | 5_3:-6710556 | None:intergenic |
| AGATAGGTTCATACCCAAAT+GGG | 0.506648 | 5_3:-6707268 | None:intergenic |
| CATGTCTTTACTTTGCTAGA+GGG | 0.506660 | 5_3:+6707802 | Msa0794810:CDS |
| AATATGACTCTCACTGTCTC+CGG | 0.508178 | 5_3:-6709878 | None:intergenic |
| TCAACATTACTGGTCGGGGC+AGG | 0.511014 | 5_3:+6708232 | Msa0794810:CDS |
| ATAGGGTTCTTTGGAAAAGA+GGG | 0.511296 | 5_3:-6707447 | None:intergenic |
| GGTGGTCAGAATTGGATCTC+TGG | 0.511430 | 5_3:+6707681 | Msa0794810:CDS |
| CTACTGCTGCTGCTGAGAGT+GGG | 0.512956 | 5_3:+6710748 | Msa0794810:CDS |
| TTGTGTGAAATTGCGCGGAT+AGG | 0.513544 | 5_3:+6711723 | Msa0794810:three_prime_UTR |
| TAATCACCATTATTAACCCT+TGG | 0.513837 | 5_3:-6707558 | None:intergenic |
| TGTTCCAATCCCTCAAACTT+GGG | 0.514806 | 5_3:-6707903 | None:intergenic |
| ACATTACCAGAAGGTGATGA+AGG | 0.516499 | 5_3:-6707414 | None:intergenic |
| GAATGTGCTTTCAGCAGGAA+AGG | 0.517326 | 5_3:-6708328 | None:intergenic |
| TGAAGAGTTCATGAGGTTCA+AGG | 0.521920 | 5_3:+6707929 | Msa0794810:CDS |
| TTTCTCAATGAGTCGTCTAA+CGG | 0.522774 | 5_3:+6707621 | Msa0794810:CDS |
| TAACATGGCTATGAAGTTGA+TGG | 0.523547 | 5_3:-6710505 | None:intergenic |
| CCATGTCTTTACTTTGCTAG+AGG | 0.529183 | 5_3:+6707801 | Msa0794810:CDS |
| TGCTGCTGGTGGAACATCAC+CGG | 0.530369 | 5_3:+6707992 | Msa0794810:CDS |
| AGAGGAACTGGACTTAGTAA+TGG | 0.530744 | 5_3:+6707372 | Msa0794810:CDS |
| AAGAGGTGAAGGTGAAGAAG+GGG | 0.530887 | 5_3:-6707292 | None:intergenic |
| TGCAATATGTATTGCTTGGT+CGG | 0.533943 | 5_3:-6711492 | None:intergenic |
| CTGGTCGGGGCAGGCCCGAA+AGG | 0.534386 | 5_3:+6708241 | Msa0794810:CDS |
| AACATGGCTATGAAGTTGAT+GGG | 0.534397 | 5_3:-6710504 | None:intergenic |
| CTTCTCAATAAGATATCATG+TGG | 0.536105 | 5_3:-6710335 | None:intergenic |
| TTACTAAGTCCAGTTCCTCT+AGG | 0.536989 | 5_3:-6707369 | None:intergenic |
| TTATCCAATTCTTTGTAGTG+TGG | 0.538684 | 5_3:+6706810 | Msa0794810:five_prime_UTR |
| AAAACCTACGGCTACTGGTA+AGG | 0.538757 | 5_3:+6706961 | Msa0794810:five_prime_UTR |
| ATGCTCATAATATTCATAAG+AGG | 0.539122 | 5_3:+6707715 | Msa0794810:CDS |
| GGCTGCGGCAGCATTTGCGA+TGG | 0.539812 | 5_3:+6708197 | Msa0794810:CDS |
| AAGGATGTTGCAAAGTCTGA+AGG | 0.540390 | 5_3:+6710777 | Msa0794810:CDS |
| TATTTCAACATTACTGGTCG+GGG | 0.542341 | 5_3:+6708228 | Msa0794810:CDS |
| GAAGGCGTAGATCTCGGCAC+GGG | 0.542473 | 5_3:+6710795 | Msa0794810:CDS |
| GCATCACAACTTGCTGCTGG+TGG | 0.543311 | 5_3:+6707981 | Msa0794810:CDS |
| CATAGCCATGTTAACCATGC+AGG | 0.544634 | 5_3:+6710515 | Msa0794810:CDS |
| TTCTGGGGACAAGCCTAACT+CGG | 0.544864 | 5_3:+6708284 | Msa0794810:CDS |
| ATGTATTTGATTGATGATGA+TGG | 0.548733 | 5_3:-6711459 | None:intergenic |
| AAATGCTTGAAAGAGAGTAA+AGG | 0.549806 | 5_3:-6707020 | None:intergenic |
| CACCAGCGCAGTCTCTCTGT+TGG | 0.552012 | 5_3:+6710464 | Msa0794810:CDS |
| AGCAATACATATTGCATACA+TGG | 0.552154 | 5_3:+6711499 | Msa0794810:three_prime_UTR |
| ACATTTCAGAGCCGTGGCTG+CGG | 0.553398 | 5_3:+6708182 | Msa0794810:intron |
| ATCTGCTTCGGGTGACAACA+TGG | 0.554785 | 5_3:+6711053 | Msa0794810:CDS |
| TTGTTGACTCTACAGAAATG+TGG | 0.554888 | 5_3:+6710891 | Msa0794810:intron |
| TGCTCAGCAGCATCAAAGAA+TGG | 0.555393 | 5_3:+6707953 | Msa0794810:CDS |
| AAGTCCTTGAACTCCAAGAA+AGG | 0.556107 | 5_3:+6710390 | Msa0794810:CDS |
| AAGTCTGAAGGCGTAGATCT+CGG | 0.557200 | 5_3:+6710789 | Msa0794810:CDS |
| CACATGATATCTTATTGAGA+AGG | 0.557830 | 5_3:+6710336 | Msa0794810:CDS |
| CACTGCCACCAACAGCACCT+TGG | 0.559329 | 5_3:-6707509 | None:intergenic |
| AATATTTCAACATTACTGGT+CGG | 0.562602 | 5_3:+6708226 | Msa0794810:CDS |
| TACAAGAGGCAAGCAAGGGG+AGG | 0.562749 | 5_3:+6711202 | Msa0794810:three_prime_UTR |
| ATAACATAAAATGGGAAAGG+AGG | 0.563680 | 5_3:-6711572 | None:intergenic |
| AAAGACCTGCATGGTTAACA+TGG | 0.565559 | 5_3:-6710520 | None:intergenic |
| GGAATTCTCACATCTTGGAC+AGG | 0.567021 | 5_3:-6709812 | None:intergenic |
| GTTTCTTGCTATGGTTTCTG+GGG | 0.567026 | 5_3:+6708269 | Msa0794810:CDS |
| TATGTTACATTTCAGAGCCG+TGG | 0.567197 | 5_3:+6708176 | Msa0794810:intron |
| CAACAGAGAGACTGCGCTGG+TGG | 0.569130 | 5_3:-6710463 | None:intergenic |
| CCAATAGGGTTAAGAGGTGA+AGG | 0.570288 | 5_3:-6707303 | None:intergenic |
| GACTTTAGCAAGAACCACAT+TGG | 0.572181 | 5_3:-6707115 | None:intergenic |
| TACATATTGCATACATGGAT+AGG | 0.572521 | 5_3:+6711504 | Msa0794810:three_prime_UTR |
| TGAATAACATAAAATGGGAA+AGG | 0.574733 | 5_3:-6711575 | None:intergenic |
| CAAATATTCTCTTTAAAGCG+TGG | 0.575174 | 5_3:-6708529 | None:intergenic |
| GAGAATATCCAAGGTGCTGT+TGG | 0.575381 | 5_3:+6707501 | Msa0794810:CDS |
| TTAGACGACTCATTGAGAAA+AGG | 0.576395 | 5_3:-6707618 | None:intergenic |
| AAAATACAAGAGGCAAGCAA+GGG | 0.581659 | 5_3:+6711198 | Msa0794810:three_prime_UTR |
| CACTGTCTCCGGAAAGACAA+AGG | 0.581924 | 5_3:-6709867 | None:intergenic |
| TGTGAAACCCTACAAGGAGA+AGG | 0.583303 | 5_3:+6709943 | Msa0794810:CDS |
| TCCTTGAACTCCAAGAAAGG+AGG | 0.583568 | 5_3:+6710393 | Msa0794810:CDS |
| CCGCGTCTTGAAATGGGCGT+TGG | 0.584382 | 5_3:+6707660 | Msa0794810:CDS |
| ATGTCTTATGAGAATATCCA+AGG | 0.586654 | 5_3:+6707492 | Msa0794810:CDS |
| CTTTCCATTGCAGGCTACAG+TGG | 0.586758 | 5_3:+6710639 | Msa0794810:intron |
| CTTTCTCCTGATAACATCCA+AGG | 0.587933 | 5_3:+6710539 | Msa0794810:CDS |
| CAGAGAGACTGCGCTGGTGG+TGG | 0.594991 | 5_3:-6710460 | None:intergenic |
| GTTGGTGGCAGTGGTGCTGG+TGG | 0.595287 | 5_3:+6707519 | Msa0794810:CDS |
| ACAAGCCTAACTCGGCTTCG+CGG | 0.597420 | 5_3:+6708292 | Msa0794810:CDS |
| GCTGCGGCAGCATTTGCGAT+GGG | 0.597928 | 5_3:+6708198 | Msa0794810:CDS |
| AAGCAAAGAGACTGTCAGGA+AGG | 0.599815 | 5_3:-6710921 | None:intergenic |
| TCTTTAGAGTCAAACGCAGA+GGG | 0.601397 | 5_3:-6710122 | None:intergenic |
| TAGCAAGGTTATGAAGAACC+TGG | 0.603647 | 5_3:-6707233 | None:intergenic |
| GTGAGAGTCATATTATCGAA+AGG | 0.603657 | 5_3:+6709887 | Msa0794810:CDS |
| GGGTCTTTACCCTAATAGCA+AGG | 0.608257 | 5_3:-6707248 | None:intergenic |
| TCAGCAGCAGCAATTTGAGA+GGG | 0.609147 | 5_3:+6710076 | Msa0794810:CDS |
| CCTCTAGCAAAGTAAAGACA+TGG | 0.612058 | 5_3:-6707801 | None:intergenic |
| GTGAAACCCTACAAGGAGAA+GGG | 0.615151 | 5_3:+6709944 | Msa0794810:CDS |
| CATTACCAGAAGGTGATGAA+GGG | 0.615959 | 5_3:-6707413 | None:intergenic |
| AGCAGCACAGTGATAATCAA+AGG | 0.615972 | 5_3:+6708048 | Msa0794810:CDS |
| TGTATGCAATATGTATTGCT+TGG | 0.617673 | 5_3:-6711496 | None:intergenic |
| CTCTCATTAGCCACTTCCGG+TGG | 0.619392 | 5_3:-6710985 | None:intergenic |
| AGCAAAGAGACTGTCAGGAA+GGG | 0.620621 | 5_3:-6710920 | None:intergenic |
| AATTGGATCTCTGGTAACAA+TGG | 0.622958 | 5_3:+6707690 | Msa0794810:CDS |
| AGATCTTGTGTGAAATTGCG+CGG | 0.623399 | 5_3:+6711718 | Msa0794810:three_prime_UTR |
| ATCAGCAGCAGCAATTTGAG+AGG | 0.624147 | 5_3:+6710075 | Msa0794810:CDS |
| TGTGCTTGTGAAACCCTACA+AGG | 0.627297 | 5_3:+6709937 | Msa0794810:CDS |
| TGTATAGCCACCAAAACCTA+CGG | 0.627885 | 5_3:+6706949 | Msa0794810:five_prime_UTR |
| TCCGGTGGAGAGAAATCAGA+CGG | 0.628112 | 5_3:-6710970 | None:intergenic |
| GTAGCAGCATCAATGCAAGA+TGG | 0.631513 | 5_3:-6710729 | None:intergenic |
| CACCAACAGAGAGACTGCGC+TGG | 0.632218 | 5_3:-6710466 | None:intergenic |
| CTAAAGAACCAGCAGAAGTG+AGG | 0.639544 | 5_3:-6710665 | None:intergenic |
| AACAACATGAAGAGTTCATG+AGG | 0.641597 | 5_3:+6707922 | Msa0794810:CDS |
| TTCTTTAGAGTCAAACGCAG+AGG | 0.643087 | 5_3:-6710123 | None:intergenic |
| AATATCCAAGGTGCTGTTGG+TGG | 0.644306 | 5_3:+6707504 | Msa0794810:CDS |
| CTTATTGAGAAGGAAAATGG+AGG | 0.653298 | 5_3:+6710346 | Msa0794810:CDS |
| ACATGGCTATGAAGTTGATG+GGG | 0.654909 | 5_3:-6710503 | None:intergenic |
| TGAAGGCGTAGATCTCGGCA+CGG | 0.664087 | 5_3:+6710794 | Msa0794810:CDS |
| TTCTTATGAAGCAACCAATG+TGG | 0.670186 | 5_3:+6707101 | Msa0794810:CDS |
| TCAGCAGCATCAAAGAATGG+TGG | 0.671588 | 5_3:+6707956 | Msa0794810:CDS |
| CGTGAGTCACATATGAAATG+GGG | 0.678147 | 5_3:-6709914 | None:intergenic |
| AAATACAAGAGGCAAGCAAG+GGG | 0.680528 | 5_3:+6711199 | Msa0794810:three_prime_UTR |
| AACGCAGAGGGACTTAAACA+TGG | 0.682483 | 5_3:-6710110 | None:intergenic |
| AAGGCGTAGATCTCGGCACG+GGG | 0.683873 | 5_3:+6710796 | Msa0794810:CDS |
| CCAACGCCCATTTCAAGACG+CGG | 0.684511 | 5_3:-6707660 | None:intergenic |
| CAGCAGCAGCAATTTGAGAG+GGG | 0.685988 | 5_3:+6710077 | Msa0794810:CDS |
| TATCAGGAGAAAGACCTGCA+TGG | 0.700183 | 5_3:-6710529 | None:intergenic |
| TGTGACCAAACATTACCAGA+AGG | 0.700366 | 5_3:-6707423 | None:intergenic |
| CATACCTTACCAGTAGCCGT+AGG | 0.703434 | 5_3:-6706965 | None:intergenic |
| GGTGTGCACAGTGAAAATCG+TGG | 0.781448 | 5_3:-6708562 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGTTTTAATATTATGTA+TGG | + | chr5_3:6708152-6708171 | Msa0794810:intron | 10.0% |
| !! | TTAATAATGTTATTCTTATT+TGG | + | chr5_3:6709129-6709148 | Msa0794810:intron | 10.0% |
| !!! | TATTTATGTATTTATTTCTT+AGG | + | chr5_3:6711135-6711154 | Msa0794810:intron | 10.0% |
| !!! | ATTACGATTTTATGAATAAT+AGG | + | chr5_3:6709452-6709471 | Msa0794810:intron | 15.0% |
| !! | GATCGTATTTATATTTATAT+CGG | + | chr5_3:6710845-6710864 | Msa0794810:intron | 15.0% |
| !! | TATGATGAATAACATAAAAT+GGG | - | chr5_3:6711583-6711602 | None:intergenic | 15.0% |
| !!! | AAGATTTGATTTTTCACTAA+TGG | + | chr5_3:6707077-6707096 | Msa0794810:exon | 20.0% |
| !!! | AGATTTGATTTTTCACTAAT+GGG | + | chr5_3:6707078-6707097 | Msa0794810:exon | 20.0% |
| !! | ATATTCTCATAAGACATTAA+AGG | - | chr5_3:6707489-6707508 | None:intergenic | 20.0% |
| !!! | AAAGGTATATTTCTTATAGA+TGG | + | chr5_3:6708066-6708085 | Msa0794810:intron | 20.0% |
| !! | AAGGTATATTTCTTATAGAT+GGG | + | chr5_3:6708067-6708086 | Msa0794810:intron | 20.0% |
| !! | TTAAATTGCATAATGATGAA+GGG | - | chr5_3:6708756-6708775 | None:intergenic | 20.0% |
| !!! | AAATGAATATTGATTTGTCA+AGG | + | chr5_3:6709226-6709245 | Msa0794810:intron | 20.0% |
| !!! | AATGAATATTGATTTGTCAA+GGG | + | chr5_3:6709227-6709246 | Msa0794810:intron | 20.0% |
| !!! | TTTAAAATATTACCTTCTGA+GGG | - | chr5_3:6709516-6709535 | None:intergenic | 20.0% |
| !!! | AATTTTTTGTACCTATCATT+AGG | + | chr5_3:6709610-6709629 | Msa0794810:intron | 20.0% |
| !!! | TTGTTATTTTGAAGCAAATT+TGG | + | chr5_3:6709788-6709807 | Msa0794810:intron | 20.0% |
| !! | TATTCCCGAATTAATATTAT+TGG | + | chr5_3:6710023-6710042 | Msa0794810:intron | 20.0% |
| !! | ATTCCCGAATTAATATTATT+GGG | + | chr5_3:6710024-6710043 | Msa0794810:intron | 20.0% |
| !! | TAGTCCCAATAATATTAATT+CGG | - | chr5_3:6710031-6710050 | None:intergenic | 20.0% |
| !! | TGAATTGTAAAGAACTTAAA+CGG | - | chr5_3:6711082-6711101 | None:intergenic | 20.0% |
| !!! | TTTAAGTTCTTTACAATTCA+AGG | + | chr5_3:6711082-6711101 | Msa0794810:exon | 20.0% |
| !! | CTATGATGAATAACATAAAA+TGG | - | chr5_3:6711584-6711603 | None:intergenic | 20.0% |
| !!! | TGATTTTTGAAGCATTTTCA+GGG | - | chr5_3:6707152-6707171 | None:intergenic | 25.0% |
| !!! | ATGATTTTTGAAGCATTTTC+AGG | - | chr5_3:6707153-6707172 | None:intergenic | 25.0% |
| ! | TGAAAATGCTTCAAAAATCA+TGG | + | chr5_3:6707152-6707171 | Msa0794810:CDS | 25.0% |
| ! | GAAAATGCTTCAAAAATCAT+GGG | + | chr5_3:6707153-6707172 | Msa0794810:CDS | 25.0% |
| !!! | AGATTTTGAAAAAGGGTTAT+TGG | - | chr5_3:6707346-6707365 | None:intergenic | 25.0% |
| !!! | TAGGAGAAGATTTTGAAAAA+GGG | - | chr5_3:6707353-6707372 | None:intergenic | 25.0% |
| ! | GATTAAACTTTGGACTAATA+GGG | - | chr5_3:6707467-6707486 | None:intergenic | 25.0% |
| ! | GACATTAAAGGATTAAACTT+TGG | - | chr5_3:6707477-6707496 | None:intergenic | 25.0% |
| ! | ATGCTCATAATATTCATAAG+AGG | + | chr5_3:6707715-6707734 | Msa0794810:CDS | 25.0% |
| ! | AAGTAAACAACAAACTAAAG+AGG | - | chr5_3:6708098-6708117 | None:intergenic | 25.0% |
| ! | GAAGAATATTTCAACATTAC+TGG | + | chr5_3:6708222-6708241 | Msa0794810:CDS | 25.0% |
| ! | AATATTTCAACATTACTGGT+CGG | + | chr5_3:6708226-6708245 | Msa0794810:CDS | 25.0% |
| ! | ATTCAAAGATGAAGATGTTT+CGG | + | chr5_3:6708347-6708366 | Msa0794810:CDS | 25.0% |
| ! | TATATCACCTTATCATAGAT+AGG | + | chr5_3:6708433-6708452 | Msa0794810:intron | 25.0% |
| ! | ATATTGCCATTAATTATTCC+AGG | + | chr5_3:6708504-6708523 | Msa0794810:intron | 25.0% |
| ! | AAAAGACACATTACTTAGTT+AGG | - | chr5_3:6708682-6708701 | None:intergenic | 25.0% |
| !! | TTGAGTTTGCTTGATAATTA+AGG | + | chr5_3:6708718-6708737 | Msa0794810:intron | 25.0% |
| !! | TGAGTTTGCTTGATAATTAA+GGG | + | chr5_3:6708719-6708738 | Msa0794810:intron | 25.0% |
| ! | CTTAAATTGCATAATGATGA+AGG | - | chr5_3:6708757-6708776 | None:intergenic | 25.0% |
| !! | TGTAACGTTCTTTTTGTATT+AGG | + | chr5_3:6708845-6708864 | Msa0794810:intron | 25.0% |
| !!! | ATGAATATTGATTTGTCAAG+GGG | + | chr5_3:6709228-6709247 | Msa0794810:intron | 25.0% |
| ! | TACTTCATTTGTAACTAACA+TGG | - | chr5_3:6709340-6709359 | None:intergenic | 25.0% |
| !! | CGATTTTATGAATAATAGGA+TGG | + | chr5_3:6709456-6709475 | Msa0794810:intron | 25.0% |
| !!! | CTTTAAAATATTACCTTCTG+AGG | - | chr5_3:6709517-6709536 | None:intergenic | 25.0% |
| !!! | CTCAGAAGGTAATATTTTAA+AGG | + | chr5_3:6709515-6709534 | Msa0794810:intron | 25.0% |
| ! | AGTCCCAATAATATTAATTC+GGG | - | chr5_3:6710030-6710049 | None:intergenic | 25.0% |
| ! | AGAGGAAAAAGGTAAATTTA+TGG | - | chr5_3:6710239-6710258 | None:intergenic | 25.0% |
| ! | TATCTTATTGAGAAGGAAAA+TGG | + | chr5_3:6710343-6710362 | Msa0794810:CDS | 25.0% |
| !!! | CATCTAAGATTTTGAATTGT+AGG | + | chr5_3:6711170-6711189 | Msa0794810:intron | 25.0% |
| ! | GTAGGTAATAAAAATACAAG+AGG | + | chr5_3:6711188-6711207 | Msa0794810:intron | 25.0% |
| ! | AAGGATAAATGAGTGAAAAA+AGG | - | chr5_3:6711266-6711285 | None:intergenic | 25.0% |
| !!! | ACATTTATTTTCACCTGTAA+AGG | - | chr5_3:6711285-6711304 | None:intergenic | 25.0% |
| !!! | ATGTATTTGATTGATGATGA+TGG | - | chr5_3:6711462-6711481 | None:intergenic | 25.0% |
| ! | TGAATAACATAAAATGGGAA+AGG | - | chr5_3:6711578-6711597 | None:intergenic | 25.0% |
| !!! | AATAATTTGTTGTCTCAGAT+TGG | - | chr5_3:6711619-6711638 | None:intergenic | 25.0% |
| ! | AGAAAATAGGTACATAATGA+TGG | - | chr5_3:6711668-6711687 | None:intergenic | 25.0% |
| ! | AGACAAAAGCAAAAGAAAAT+AGG | - | chr5_3:6711681-6711700 | None:intergenic | 25.0% |
| TTATCCAATTCTTTGTAGTG+TGG | + | chr5_3:6706810-6706829 | Msa0794810:five_prime_UTR | 30.0% | |
| AATGCTTGAAAGAGAGTAAA+GGG | - | chr5_3:6707022-6707041 | None:intergenic | 30.0% | |
| AAATGCTTGAAAGAGAGTAA+AGG | - | chr5_3:6707023-6707042 | None:intergenic | 30.0% | |
| GAACAAGTTCATATTCTTCA+AGG | - | chr5_3:6707194-6707213 | None:intergenic | 30.0% | |
| ! | AGAATATGAACTTGTTCGTT+TGG | + | chr5_3:6707197-6707216 | Msa0794810:CDS | 30.0% |
| !! | TTCTTCATAACCTTGCTATT+AGG | + | chr5_3:6707238-6707257 | Msa0794810:CDS | 30.0% |
| !! | TCTTCATAACCTTGCTATTA+GGG | + | chr5_3:6707239-6707258 | Msa0794810:CDS | 30.0% |
| ATGAAGTGATTCTTCCAATA+GGG | - | chr5_3:6707320-6707339 | None:intergenic | 30.0% | |
| !! | CTAGGAGAAGATTTTGAAAA+AGG | - | chr5_3:6707354-6707373 | None:intergenic | 30.0% |
| ! | TTTTCAAAATCTTCTCCTAG+AGG | + | chr5_3:6707354-6707373 | Msa0794810:CDS | 30.0% |
| !!! | GTAATGGTTTTGACTTCAAT+AGG | + | chr5_3:6707388-6707407 | Msa0794810:CDS | 30.0% |
| GGATTAAACTTTGGACTAAT+AGG | - | chr5_3:6707468-6707487 | None:intergenic | 30.0% | |
| ATGTCTTATGAGAATATCCA+AGG | + | chr5_3:6707492-6707511 | Msa0794810:CDS | 30.0% | |
| ! | TTTTCACCAAGGGTTAATAA+TGG | + | chr5_3:6707552-6707571 | Msa0794810:CDS | 30.0% |
| TAATCACCATTATTAACCCT+TGG | - | chr5_3:6707561-6707580 | None:intergenic | 30.0% | |
| ! | TCCAATTGTAAGTTTGTTCA+TGG | + | chr5_3:6707840-6707859 | Msa0794810:CDS | 30.0% |
| ACCATGAACAAACTTACAAT+TGG | - | chr5_3:6707844-6707863 | None:intergenic | 30.0% | |
| GATTCAATTGATGCAAATTC+TGG | + | chr5_3:6707864-6707883 | Msa0794810:CDS | 30.0% | |
| ATATTTCAACATTACTGGTC+GGG | + | chr5_3:6708227-6708246 | Msa0794810:CDS | 30.0% | |
| CGAATAACCTATCTATGATA+AGG | - | chr5_3:6708443-6708462 | None:intergenic | 30.0% | |
| !! | CAAATATTCTCTTTAAAGCG+TGG | - | chr5_3:6708532-6708551 | None:intergenic | 30.0% |
| !! | CGCTTTAAAGAGAATATTTG+CGG | + | chr5_3:6708532-6708551 | Msa0794810:CDS | 30.0% |
| AAACTCAAATCAATCAAGGA+TGG | - | chr5_3:6708706-6708725 | None:intergenic | 30.0% | |
| AAGCAAACTCAAATCAATCA+AGG | - | chr5_3:6708710-6708729 | None:intergenic | 30.0% | |
| ! | GATAATTAAGGGTTTTCAAC+TGG | + | chr5_3:6708730-6708749 | Msa0794810:intron | 30.0% |
| AATTTAAGCTCAGTAATCAC+TGG | + | chr5_3:6708769-6708788 | Msa0794810:intron | 30.0% | |
| AGAACGTTACACATAAAACA+CGG | - | chr5_3:6708836-6708855 | None:intergenic | 30.0% | |
| GACTTCTAAACTATGTTAAC+AGG | - | chr5_3:6709195-6709214 | None:intergenic | 30.0% | |
| ! | AAATAGATTTTCCGTGTGTT+TGG | - | chr5_3:6709259-6709278 | None:intergenic | 30.0% |
| ATTTCCAACTGAAAGAACAT+TGG | + | chr5_3:6709275-6709294 | Msa0794810:intron | 30.0% | |
| ATAACTATTAAGCGTTCTTG+CGG | + | chr5_3:6709556-6709575 | Msa0794810:intron | 30.0% | |
| ! | TTTTGTACCTATCATTAGGT+AGG | + | chr5_3:6709614-6709633 | Msa0794810:intron | 30.0% |
| TCTTATTGCATCTTTACAGA+AGG | + | chr5_3:6709741-6709760 | Msa0794810:intron | 30.0% | |
| TTCTTGTTCCTGCATAAAAT+AGG | - | chr5_3:6710304-6710323 | None:intergenic | 30.0% | |
| CTTCTCAATAAGATATCATG+TGG | - | chr5_3:6710338-6710357 | None:intergenic | 30.0% | |
| CACATGATATCTTATTGAGA+AGG | + | chr5_3:6710336-6710355 | Msa0794810:CDS | 30.0% | |
| ATCGGATTATTCTTGAAATC+TGG | - | chr5_3:6710437-6710456 | None:intergenic | 30.0% | |
| ! | TCTTTACAATTCAAGGTACT+TGG | + | chr5_3:6711089-6711108 | Msa0794810:intron | 30.0% |
| ! | GGTACTTGGATGAATTATTT+TGG | + | chr5_3:6711103-6711122 | Msa0794810:intron | 30.0% |
| TTCACTCATTTATCCTTTAC+AGG | + | chr5_3:6711269-6711288 | Msa0794810:intron | 30.0% | |
| TGTATGCAATATGTATTGCT+TGG | - | chr5_3:6711499-6711518 | None:intergenic | 30.0% | |
| AGCAATACATATTGCATACA+TGG | + | chr5_3:6711499-6711518 | Msa0794810:three_prime_UTR | 30.0% | |
| TACATATTGCATACATGGAT+AGG | + | chr5_3:6711504-6711523 | Msa0794810:three_prime_UTR | 30.0% | |
| ATAACATAAAATGGGAAAGG+AGG | - | chr5_3:6711575-6711594 | None:intergenic | 30.0% | |
| AGATCCACACTACAAAGAAT+TGG | - | chr5_3:6706817-6706836 | None:intergenic | 35.0% | |
| !! | GAGTAAAGGGTATCAAGAAA+TGG | - | chr5_3:6707009-6707028 | None:intergenic | 35.0% |
| TTCTTATGAAGCAACCAATG+TGG | + | chr5_3:6707101-6707120 | Msa0794810:CDS | 35.0% | |
| TATTAGGGTAAAGACCCATT+TGG | + | chr5_3:6707254-6707273 | Msa0794810:CDS | 35.0% | |
| ATTAGGGTAAAGACCCATTT+GGG | + | chr5_3:6707255-6707274 | Msa0794810:CDS | 35.0% | |
| AGATAGGTTCATACCCAAAT+GGG | - | chr5_3:6707271-6707290 | None:intergenic | 35.0% | |
| TAGATAGGTTCATACCCAAA+TGG | - | chr5_3:6707272-6707291 | None:intergenic | 35.0% | |
| ATTCTTCCAATAGGGTTAAG+AGG | - | chr5_3:6707312-6707331 | None:intergenic | 35.0% | |
| GATGAAGTGATTCTTCCAAT+AGG | - | chr5_3:6707321-6707340 | None:intergenic | 35.0% | |
| ! | ATAGGGTTCTTTGGAAAAGA+GGG | - | chr5_3:6707450-6707469 | None:intergenic | 35.0% |
| ! | AATAGGGTTCTTTGGAAAAG+AGG | - | chr5_3:6707451-6707470 | None:intergenic | 35.0% |
| TTTGGACTAATAGGGTTCTT+TGG | - | chr5_3:6707459-6707478 | None:intergenic | 35.0% | |
| !!! | TTCTTGTGCTTTTTCACCAA+GGG | + | chr5_3:6707542-6707561 | Msa0794810:CDS | 35.0% |
| TTAGACGACTCATTGAGAAA+AGG | - | chr5_3:6707621-6707640 | None:intergenic | 35.0% | |
| TTTCTCAATGAGTCGTCTAA+CGG | + | chr5_3:6707621-6707640 | Msa0794810:CDS | 35.0% | |
| AATTGGATCTCTGGTAACAA+TGG | + | chr5_3:6707690-6707709 | Msa0794810:CDS | 35.0% | |
| !! | TCTGCAAATGATGCTAGTTT+TGG | + | chr5_3:6707744-6707763 | Msa0794810:CDS | 35.0% |
| !!! | AGTTTTGGTGTTGATGAAAG+TGG | + | chr5_3:6707759-6707778 | Msa0794810:CDS | 35.0% |
| CATGTCTTTACTTTGCTAGA+GGG | + | chr5_3:6707802-6707821 | Msa0794810:CDS | 35.0% | |
| !! | GCTAGAGGGTTTTGTAAAAA+TGG | + | chr5_3:6707816-6707835 | Msa0794810:CDS | 35.0% |
| AACAACATGAAGAGTTCATG+AGG | + | chr5_3:6707922-6707941 | Msa0794810:CDS | 35.0% | |
| TATTTCAACATTACTGGTCG+GGG | + | chr5_3:6708228-6708247 | Msa0794810:CDS | 35.0% | |
| AGCAAGAAACTCATTCCTTT+CGG | - | chr5_3:6708259-6708278 | None:intergenic | 35.0% | |
| AAGGAATGAGTTTCTTGCTA+TGG | + | chr5_3:6708260-6708279 | Msa0794810:CDS | 35.0% | |
| ! | AGTTTCTTGCTATGGTTTCT+GGG | + | chr5_3:6708268-6708287 | Msa0794810:CDS | 35.0% |
| TTATTCGCGCATACATGAAA+TGG | + | chr5_3:6708456-6708475 | Msa0794810:intron | 35.0% | |
| GTGGAACCTGGAATAATTAA+TGG | - | chr5_3:6708513-6708532 | None:intergenic | 35.0% | |
| TCAAAAATCCATCTTCCCTA+GGG | - | chr5_3:6708635-6708654 | None:intergenic | 35.0% | |
| ATCAAAAATCCATCTTCCCT+AGG | - | chr5_3:6708636-6708655 | None:intergenic | 35.0% | |
| ACATTACTTAGTTAGGAGTC+AGG | - | chr5_3:6708675-6708694 | None:intergenic | 35.0% | |
| ! | GGTTTATCCTGTACATTTTC+AGG | + | chr5_3:6708913-6708932 | Msa0794810:intron | 35.0% |
| AGTGATACCTGAAAATGTAC+AGG | - | chr5_3:6708923-6708942 | None:intergenic | 35.0% | |
| ACAACCAATGTTCTTTCAGT+TGG | - | chr5_3:6709282-6709301 | None:intergenic | 35.0% | |
| TCACGTGGAATTTCTTAACA+TGG | - | chr5_3:6709311-6709330 | None:intergenic | 35.0% | |
| !! | TGTTTGTTGTCGTTATCCTA+CGG | + | chr5_3:6709411-6709430 | Msa0794810:intron | 35.0% |
| GTGTTTGTTTGTGAACCATA+GGG | + | chr5_3:6709483-6709502 | Msa0794810:intron | 35.0% | |
| TTGTTCACTTATGTGTCAGA+AGG | - | chr5_3:6709592-6709611 | None:intergenic | 35.0% | |
| GTAAGAACCTACCTAATGAT+AGG | - | chr5_3:6709624-6709643 | None:intergenic | 35.0% | |
| TTAGGTAGGTTCTTACGTTT+AGG | + | chr5_3:6709628-6709647 | Msa0794810:intron | 35.0% | |
| GTTATTGCAATCATGACATC+TGG | + | chr5_3:6709653-6709672 | Msa0794810:intron | 35.0% | |
| ! | ACTTTTACAGACAGACACTA+CGG | - | chr5_3:6709721-6709740 | None:intergenic | 35.0% |
| CAAAAGCAGTTAGTCAATGA+AGG | - | chr5_3:6709771-6709790 | None:intergenic | 35.0% | |
| GTGAGAGTCATATTATCGAA+AGG | + | chr5_3:6709887-6709906 | Msa0794810:CDS | 35.0% | |
| ACGTGAGTCACATATGAAAT+GGG | - | chr5_3:6709918-6709937 | None:intergenic | 35.0% | |
| AAGATGTCAACTTACTTGTC+AGG | - | chr5_3:6709977-6709996 | None:intergenic | 35.0% | |
| TTGGGACTAATCATGTATAC+AGG | + | chr5_3:6710042-6710061 | Msa0794810:intron | 35.0% | |
| TTACCAGGATGGAAATCAAA+AGG | - | chr5_3:6710149-6710168 | None:intergenic | 35.0% | |
| GAGAAATTTGATTACCAGGA+TGG | - | chr5_3:6710160-6710179 | None:intergenic | 35.0% | |
| AGGTGAGAAATTTGATTACC+AGG | - | chr5_3:6710164-6710183 | None:intergenic | 35.0% | |
| GGTAATCAAATTTCTCACCT+TGG | + | chr5_3:6710164-6710183 | Msa0794810:intron | 35.0% | |
| !! | ATGGTTGCTTTAGAGGAAAA+AGG | - | chr5_3:6710250-6710269 | None:intergenic | 35.0% |
| CTTATTGAGAAGGAAAATGG+AGG | + | chr5_3:6710346-6710365 | Msa0794810:CDS | 35.0% | |
| ! | AACATGGCTATGAAGTTGAT+GGG | - | chr5_3:6710507-6710526 | None:intergenic | 35.0% |
| TAACATGGCTATGAAGTTGA+TGG | - | chr5_3:6710508-6710527 | None:intergenic | 35.0% | |
| AAATCTCCTTGGATGTTATC+AGG | - | chr5_3:6710548-6710567 | None:intergenic | 35.0% | |
| ! | AACATCCAAGGAGATTTTAC+AGG | + | chr5_3:6710551-6710570 | Msa0794810:CDS | 35.0% |
| ACTAACCTGTAAAATCTCCT+TGG | - | chr5_3:6710559-6710578 | None:intergenic | 35.0% | |
| AGAACTACACCATAGTATAC+AGG | - | chr5_3:6710582-6710601 | None:intergenic | 35.0% | |
| GTAAGCTGTTAAAACCATGT+TGG | - | chr5_3:6710607-6710626 | None:intergenic | 35.0% | |
| GTTAACATACTTTCCATTGC+AGG | + | chr5_3:6710630-6710649 | Msa0794810:intron | 35.0% | |
| !! | TTGTTGACTCTACAGAAATG+TGG | + | chr5_3:6710891-6710910 | Msa0794810:intron | 35.0% |
| AAAAATACAAGAGGCAAGCA+AGG | + | chr5_3:6711197-6711216 | Msa0794810:three_prime_UTR | 35.0% | |
| AAAATACAAGAGGCAAGCAA+GGG | + | chr5_3:6711198-6711217 | Msa0794810:three_prime_UTR | 35.0% | |
| GAGGGGGATCATATTAATTA+GGG | + | chr5_3:6711221-6711240 | Msa0794810:three_prime_UTR | 35.0% | |
| !!! | CTTAGTTTTGATGCTTCTCT+AGG | - | chr5_3:6711435-6711454 | None:intergenic | 35.0% |
| !! | CTAGAGAAGCATCAAAACTA+AGG | + | chr5_3:6711433-6711452 | Msa0794810:three_prime_UTR | 35.0% |
| TGCAATATGTATTGCTTGGT+CGG | - | chr5_3:6711495-6711514 | None:intergenic | 35.0% | |
| TGTATAGCCACCAAAACCTA+CGG | + | chr5_3:6706949-6706968 | Msa0794810:five_prime_UTR | 40.0% | |
| GACTTTAGCAAGAACCACAT+TGG | - | chr5_3:6707118-6707137 | None:intergenic | 40.0% | |
| TAGCAAGGTTATGAAGAACC+TGG | - | chr5_3:6707236-6707255 | None:intergenic | 40.0% | |
| TAAGAGGTGAAGGTGAAGAA+GGG | - | chr5_3:6707296-6707315 | None:intergenic | 40.0% | |
| TTAAGAGGTGAAGGTGAAGA+AGG | - | chr5_3:6707297-6707316 | None:intergenic | 40.0% | |
| AAATCTTCTCCTAGAGGAAC+TGG | + | chr5_3:6707360-6707379 | Msa0794810:CDS | 40.0% | |
| TTACTAAGTCCAGTTCCTCT+AGG | - | chr5_3:6707372-6707391 | None:intergenic | 40.0% | |
| AGAGGAACTGGACTTAGTAA+TGG | + | chr5_3:6707372-6707391 | Msa0794810:CDS | 40.0% | |
| CATTACCAGAAGGTGATGAA+GGG | - | chr5_3:6707416-6707435 | None:intergenic | 40.0% | |
| ACATTACCAGAAGGTGATGA+AGG | - | chr5_3:6707417-6707436 | None:intergenic | 40.0% | |
| ! | CATCACCTTCTGGTAATGTT+TGG | + | chr5_3:6707418-6707437 | Msa0794810:CDS | 40.0% |
| TGTGACCAAACATTACCAGA+AGG | - | chr5_3:6707426-6707445 | None:intergenic | 40.0% | |
| !!! | GTTCTTGTGCTTTTTCACCA+AGG | + | chr5_3:6707541-6707560 | Msa0794810:CDS | 40.0% |
| !! | TGGTGTTGATGAAAGTGGAT+TGG | + | chr5_3:6707764-6707783 | Msa0794810:CDS | 40.0% |
| !! | GGTGTTGATGAAAGTGGATT+GGG | + | chr5_3:6707765-6707784 | Msa0794810:CDS | 40.0% |
| !! | GATGAAAGTGGATTGGGATT+TGG | + | chr5_3:6707771-6707790 | Msa0794810:CDS | 40.0% |
| CCTCTAGCAAAGTAAAGACA+TGG | - | chr5_3:6707804-6707823 | None:intergenic | 40.0% | |
| CCATGTCTTTACTTTGCTAG+AGG | + | chr5_3:6707801-6707820 | Msa0794810:CDS | 40.0% | |
| TGTTCCAATCCCTCAAACTT+GGG | - | chr5_3:6707906-6707925 | None:intergenic | 40.0% | |
| TTGTTCCAATCCCTCAAACT+TGG | - | chr5_3:6707907-6707926 | None:intergenic | 40.0% | |
| TGAAGAGTTCATGAGGTTCA+AGG | + | chr5_3:6707929-6707948 | Msa0794810:CDS | 40.0% | |
| ATGTACTTGTCGTACGATAC+CGG | - | chr5_3:6708014-6708033 | None:intergenic | 40.0% | |
| AGCAGCACAGTGATAATCAA+AGG | + | chr5_3:6708048-6708067 | Msa0794810:CDS | 40.0% | |
| TATGTTACATTTCAGAGCCG+TGG | + | chr5_3:6708176-6708195 | Msa0794810:intron | 40.0% | |
| GCAAGAAACTCATTCCTTTC+GGG | - | chr5_3:6708258-6708277 | None:intergenic | 40.0% | |
| ! | GAGTTTCTTGCTATGGTTTC+TGG | + | chr5_3:6708267-6708286 | Msa0794810:CDS | 40.0% |
| ! | GTTTCTTGCTATGGTTTCTG+GGG | + | chr5_3:6708269-6708288 | Msa0794810:CDS | 40.0% |
| TCTTTGAATGTGCTTTCAGC+AGG | - | chr5_3:6708336-6708355 | None:intergenic | 40.0% | |
| ! | AAGATGTTTCGGAGTACTTC+AGG | + | chr5_3:6708358-6708377 | Msa0794810:CDS | 40.0% |
| CATGATATATGTCTCCCATG+AGG | + | chr5_3:6708885-6708904 | Msa0794810:intron | 40.0% | |
| AGAATCGTGGACATTTAAGC+AGG | - | chr5_3:6709160-6709179 | None:intergenic | 40.0% | |
| CTAACATGGAATACTTCACG+TGG | - | chr5_3:6709326-6709345 | None:intergenic | 40.0% | |
| AAGTTCATGCACTACTAGCA+TGG | - | chr5_3:6709365-6709384 | None:intergenic | 40.0% | |
| AACAATACTATGACTGCCGT+AGG | - | chr5_3:6709430-6709449 | None:intergenic | 40.0% | |
| CGTGTTTGTTTGTGAACCAT+AGG | + | chr5_3:6709482-6709501 | Msa0794810:intron | 40.0% | |
| TTTGTGAACCATAGGGTTTG+TGG | + | chr5_3:6709490-6709509 | Msa0794810:intron | 40.0% | |
| GGTAAGGAATTCTCACATCT+TGG | - | chr5_3:6709820-6709839 | None:intergenic | 40.0% | |
| GTTTGTCACCTTTGTCTTTC+CGG | + | chr5_3:6709859-6709878 | Msa0794810:CDS | 40.0% | |
| AATATGACTCTCACTGTCTC+CGG | - | chr5_3:6709881-6709900 | None:intergenic | 40.0% | |
| CGTGAGTCACATATGAAATG+GGG | - | chr5_3:6709917-6709936 | None:intergenic | 40.0% | |
| CACGTGAGTCACATATGAAA+TGG | - | chr5_3:6709919-6709938 | None:intergenic | 40.0% | |
| ! | ACTTTTCCCTTCTCCTTGTA+GGG | - | chr5_3:6709953-6709972 | None:intergenic | 40.0% |
| ! | AACTTTTCCCTTCTCCTTGT+AGG | - | chr5_3:6709954-6709973 | None:intergenic | 40.0% |
| !! | TCTTTAGAGTCAAACGCAGA+GGG | - | chr5_3:6710125-6710144 | None:intergenic | 40.0% |
| !! | TTCTTTAGAGTCAAACGCAG+AGG | - | chr5_3:6710126-6710145 | None:intergenic | 40.0% |
| !!! | GAACCTTTTGATTTCCATCC+TGG | + | chr5_3:6710143-6710162 | Msa0794810:CDS | 40.0% |
| CGAGTAGAATAAAGAAGCCA+AGG | - | chr5_3:6710184-6710203 | None:intergenic | 40.0% | |
| ! | TCACCAGACCTATTTTATGC+AGG | + | chr5_3:6710293-6710312 | Msa0794810:intron | 40.0% |
| GTTCCTGCATAAAATAGGTC+TGG | - | chr5_3:6710299-6710318 | None:intergenic | 40.0% | |
| AAGTCCTTGAACTCCAAGAA+AGG | + | chr5_3:6710390-6710409 | Msa0794810:CDS | 40.0% | |
| !! | AGTTGATGGGGAAAAACCAA+AGG | - | chr5_3:6710494-6710513 | None:intergenic | 40.0% |
| !! | ACATGGCTATGAAGTTGATG+GGG | - | chr5_3:6710506-6710525 | None:intergenic | 40.0% |
| AAAGACCTGCATGGTTAACA+TGG | - | chr5_3:6710523-6710542 | None:intergenic | 40.0% | |
| CTTTCTCCTGATAACATCCA+AGG | + | chr5_3:6710539-6710558 | Msa0794810:CDS | 40.0% | |
| ! | CAGGTTAGTCCTGTATACTA+TGG | + | chr5_3:6710570-6710589 | Msa0794810:intron | 40.0% |
| !! | TGGTGTAGTTCTAACCAACA+TGG | + | chr5_3:6710590-6710609 | Msa0794810:intron | 40.0% |
| TGCTGAGAGTGGGAATTTAA+AGG | + | chr5_3:6710758-6710777 | Msa0794810:CDS | 40.0% | |
| AAGGATGTTGCAAAGTCTGA+AGG | + | chr5_3:6710777-6710796 | Msa0794810:CDS | 40.0% | |
| !!! | TAATCTCCAGCTGCTTTTGT+TGG | - | chr5_3:6710949-6710968 | None:intergenic | 40.0% |
| TGAATCGACAACATCTGCTT+CGG | + | chr5_3:6711041-6711060 | Msa0794810:CDS | 40.0% | |
| AAATACAAGAGGCAAGCAAG+GGG | + | chr5_3:6711199-6711218 | Msa0794810:three_prime_UTR | 40.0% | |
| GGAGGGGGATCATATTAATT+AGG | + | chr5_3:6711220-6711239 | Msa0794810:three_prime_UTR | 40.0% | |
| !! | ATGCTTCTCTAGGATGATCT+AGG | - | chr5_3:6711425-6711444 | None:intergenic | 40.0% |
| AGATCTTGTGTGAAATTGCG+CGG | + | chr5_3:6711718-6711737 | Msa0794810:three_prime_UTR | 40.0% | |
| CTCTCTGACGCTTCAAAGAT+AGG | + | chr5_3:6706848-6706867 | Msa0794810:five_prime_UTR | 45.0% | |
| ! | TTACCAGTAGCCGTAGGTTT+TGG | - | chr5_3:6706962-6706981 | None:intergenic | 45.0% |
| AAAACCTACGGCTACTGGTA+AGG | + | chr5_3:6706961-6706980 | Msa0794810:five_prime_UTR | 45.0% | |
| AGGTTATGAAGAACCTGGTC+AGG | - | chr5_3:6707231-6707250 | None:intergenic | 45.0% | |
| GGGTCTTTACCCTAATAGCA+AGG | - | chr5_3:6707251-6707270 | None:intergenic | 45.0% | |
| AAGGTGAAGAAGGGGTAGAT+AGG | - | chr5_3:6707287-6707306 | None:intergenic | 45.0% | |
| AAGAGGTGAAGGTGAAGAAG+GGG | - | chr5_3:6707295-6707314 | None:intergenic | 45.0% | |
| CCAATAGGGTTAAGAGGTGA+AGG | - | chr5_3:6707306-6707325 | None:intergenic | 45.0% | |
| CCTTCACCTCTTAACCCTAT+TGG | + | chr5_3:6707303-6707322 | Msa0794810:CDS | 45.0% | |
| !! | GAGAATATCCAAGGTGCTGT+TGG | + | chr5_3:6707501-6707520 | Msa0794810:CDS | 45.0% |
| !! | AATATCCAAGGTGCTGTTGG+TGG | + | chr5_3:6707504-6707523 | Msa0794810:CDS | 45.0% |
| GTTGATCCGCGTCTTGAAAT+GGG | + | chr5_3:6707654-6707673 | Msa0794810:CDS | 45.0% | |
| !! | GCAAATTCTGGTGCTGTTGT+TGG | + | chr5_3:6707876-6707895 | Msa0794810:CDS | 45.0% |
| !! | TGTTGGTTCACCCAAGTTTG+AGG | + | chr5_3:6707893-6707912 | Msa0794810:CDS | 45.0% |
| ! | GTTGGTTCACCCAAGTTTGA+GGG | + | chr5_3:6707894-6707913 | Msa0794810:CDS | 45.0% |
| TTCACCCAAGTTTGAGGGAT+TGG | + | chr5_3:6707899-6707918 | Msa0794810:CDS | 45.0% | |
| TGCTCAGCAGCATCAAAGAA+TGG | + | chr5_3:6707953-6707972 | Msa0794810:CDS | 45.0% | |
| TCAGCAGCATCAAAGAATGG+TGG | + | chr5_3:6707956-6707975 | Msa0794810:CDS | 45.0% | |
| GAATGTGCTTTCAGCAGGAA+AGG | - | chr5_3:6708331-6708350 | None:intergenic | 45.0% | |
| !! | TCTCTTTAAAGCGTGGAACC+TGG | - | chr5_3:6708525-6708544 | None:intergenic | 45.0% |
| CACAGGCAAAACCACTTTCA+TGG | - | chr5_3:6708586-6708605 | None:intergenic | 45.0% | |
| !! | TTCCAAGAAGCATCAGACCA+GGG | - | chr5_3:6708611-6708630 | None:intergenic | 45.0% |
| GGATAAACCTGTCTCCTCAT+GGG | - | chr5_3:6708902-6708921 | None:intergenic | 45.0% | |
| AGGATAAACCTGTCTCCTCA+TGG | - | chr5_3:6708903-6708922 | None:intergenic | 45.0% | |
| AAGGGGAGAATCCAAACACA+CGG | + | chr5_3:6709245-6709264 | Msa0794810:intron | 45.0% | |
| GGAATTCTCACATCTTGGAC+AGG | - | chr5_3:6709815-6709834 | None:intergenic | 45.0% | |
| ! | AACATGCGCTTTTGCTGGTA+AGG | - | chr5_3:6709836-6709855 | None:intergenic | 45.0% |
| ! | TACCAGCAAAAGCGCATGTT+TGG | + | chr5_3:6709836-6709855 | Msa0794810:CDS | 45.0% |
| ! | ACCAGCAAAAGCGCATGTTT+GGG | + | chr5_3:6709837-6709856 | Msa0794810:CDS | 45.0% |
| TGTGCTTGTGAAACCCTACA+AGG | + | chr5_3:6709937-6709956 | Msa0794810:CDS | 45.0% | |
| TGTGAAACCCTACAAGGAGA+AGG | + | chr5_3:6709943-6709962 | Msa0794810:CDS | 45.0% | |
| GTGAAACCCTACAAGGAGAA+GGG | + | chr5_3:6709944-6709963 | Msa0794810:CDS | 45.0% | |
| CAAATTGCTGCTGCTGATGT+TGG | - | chr5_3:6710073-6710092 | None:intergenic | 45.0% | |
| ATCAGCAGCAGCAATTTGAG+AGG | + | chr5_3:6710075-6710094 | Msa0794810:CDS | 45.0% | |
| TCAGCAGCAGCAATTTGAGA+GGG | + | chr5_3:6710076-6710095 | Msa0794810:CDS | 45.0% | |
| AACGCAGAGGGACTTAAACA+TGG | - | chr5_3:6710113-6710132 | None:intergenic | 45.0% | |
| AAAACTGAAGCAGCACGAGA+TGG | - | chr5_3:6710269-6710288 | None:intergenic | 45.0% | |
| TCCTTGAACTCCAAGAAAGG+AGG | + | chr5_3:6710393-6710412 | Msa0794810:CDS | 45.0% | |
| CATAGCCATGTTAACCATGC+AGG | + | chr5_3:6710515-6710534 | Msa0794810:CDS | 45.0% | |
| TATCAGGAGAAAGACCTGCA+TGG | - | chr5_3:6710532-6710551 | None:intergenic | 45.0% | |
| CTAAAGAACCAGCAGAAGTG+AGG | - | chr5_3:6710668-6710687 | None:intergenic | 45.0% | |
| !! | CTCACTTCTGCTGGTTCTTT+AGG | + | chr5_3:6710666-6710685 | Msa0794810:CDS | 45.0% |
| GTAGCAGCATCAATGCAAGA+TGG | - | chr5_3:6710732-6710751 | None:intergenic | 45.0% | |
| ! | AAGTCTGAAGGCGTAGATCT+CGG | + | chr5_3:6710789-6710808 | Msa0794810:CDS | 45.0% |
| AGCAAAGAGACTGTCAGGAA+GGG | - | chr5_3:6710923-6710942 | None:intergenic | 45.0% | |
| AAGCAAAGAGACTGTCAGGA+AGG | - | chr5_3:6710924-6710943 | None:intergenic | 45.0% | |
| GTACTCTCATTAGCCACTTC+CGG | - | chr5_3:6710991-6711010 | None:intergenic | 45.0% | |
| GAATCGACAACATCTGCTTC+GGG | + | chr5_3:6711042-6711061 | Msa0794810:CDS | 45.0% | |
| TTGTGTGAAATTGCGCGGAT+AGG | + | chr5_3:6711723-6711742 | Msa0794810:three_prime_UTR | 45.0% | |
| CATACCTTACCAGTAGCCGT+AGG | - | chr5_3:6706968-6706987 | None:intergenic | 50.0% | |
| TTTGGCATGTTGTCCTGACC+AGG | + | chr5_3:6707215-6707234 | Msa0794810:CDS | 50.0% | |
| AGGAACCCTTCATCACCTTC+TGG | + | chr5_3:6707408-6707427 | Msa0794810:CDS | 50.0% | |
| GTCGTCTAACGGCGATGATT+TGG | + | chr5_3:6707632-6707651 | Msa0794810:CDS | 50.0% | |
| GGTTGATCCGCGTCTTGAAA+TGG | + | chr5_3:6707653-6707672 | Msa0794810:CDS | 50.0% | |
| GGTGGTCAGAATTGGATCTC+TGG | + | chr5_3:6707681-6707700 | Msa0794810:CDS | 50.0% | |
| ! | TTCTGGGGACAAGCCTAACT+CGG | + | chr5_3:6708284-6708303 | Msa0794810:CDS | 50.0% |
| !! | ACGACTTGCTAATGCTGTGC+AGG | + | chr5_3:6708396-6708415 | Msa0794810:intron | 50.0% |
| GGTGTGCACAGTGAAAATCG+TGG | - | chr5_3:6708565-6708584 | None:intergenic | 50.0% | |
| CACTGTGCACACCATGAAAG+TGG | + | chr5_3:6708572-6708591 | Msa0794810:CDS | 50.0% | |
| !! | CTTCCAAGAAGCATCAGACC+AGG | - | chr5_3:6708612-6708631 | None:intergenic | 50.0% |
| TGATGCTTCTTGGAAGCCCT+AGG | + | chr5_3:6708616-6708635 | Msa0794810:intron | 50.0% | |
| GATGCTTCTTGGAAGCCCTA+GGG | + | chr5_3:6708617-6708636 | Msa0794810:intron | 50.0% | |
| GGAGTCAGGATCAACATCAG+AGG | - | chr5_3:6708661-6708680 | None:intergenic | 50.0% | |
| TATGTCTCCCATGAGGAGAC+AGG | + | chr5_3:6708892-6708911 | Msa0794810:intron | 50.0% | |
| ! | ACCCAAACATGCGCTTTTGC+TGG | - | chr5_3:6709841-6709860 | None:intergenic | 50.0% |
| CACTGTCTCCGGAAAGACAA+AGG | - | chr5_3:6709870-6709889 | None:intergenic | 50.0% | |
| CAGCAGCAGCAATTTGAGAG+GGG | + | chr5_3:6710077-6710096 | Msa0794810:CDS | 50.0% | |
| ! | GCACGAGATGGTTGCTTTAG+AGG | - | chr5_3:6710257-6710276 | None:intergenic | 50.0% |
| GAGAAGGAAAATGGAGGAGC+AGG | + | chr5_3:6710352-6710371 | Msa0794810:CDS | 50.0% | |
| GCCTCCTTTCTTGGAGTTCA+AGG | - | chr5_3:6710397-6710416 | None:intergenic | 50.0% | |
| GACTCTTCAGCCTCCTTTCT+TGG | - | chr5_3:6710406-6710425 | None:intergenic | 50.0% | |
| ! | TCTCTCTGTTGGTGCTCCTT+TGG | + | chr5_3:6710475-6710494 | Msa0794810:CDS | 50.0% |
| CTTTCCATTGCAGGCTACAG+TGG | + | chr5_3:6710639-6710658 | Msa0794810:intron | 50.0% | |
| GGTGAAGCAAAGAGACTGTC+AGG | - | chr5_3:6710928-6710947 | None:intergenic | 50.0% | |
| GCTTCACCAACAAAAGCAGC+TGG | + | chr5_3:6710940-6710959 | Msa0794810:CDS | 50.0% | |
| TCCGTCTGATTTCTCTCCAC+CGG | + | chr5_3:6710969-6710988 | Msa0794810:CDS | 50.0% | |
| TCCGGTGGAGAGAAATCAGA+CGG | - | chr5_3:6710973-6710992 | None:intergenic | 50.0% | |
| TGATTTCTCTCCACCGGAAG+TGG | + | chr5_3:6710975-6710994 | Msa0794810:CDS | 50.0% | |
| ATCTGCTTCGGGTGACAACA+TGG | + | chr5_3:6711053-6711072 | Msa0794810:CDS | 50.0% | |
| !! | CCAGTAGCCGTAGGTTTTGG+TGG | - | chr5_3:6706959-6706978 | None:intergenic | 55.0% |
| CCACCAAAACCTACGGCTAC+TGG | + | chr5_3:6706956-6706975 | Msa0794810:five_prime_UTR | 55.0% | |
| CCAACGCCCATTTCAAGACG+CGG | - | chr5_3:6707663-6707682 | None:intergenic | 55.0% | |
| !! | CGTCTTGAAATGGGCGTTGG+TGG | + | chr5_3:6707663-6707682 | Msa0794810:CDS | 55.0% |
| !! | TGGGCGTTGGTGGTCAGAAT+TGG | + | chr5_3:6707673-6707692 | Msa0794810:CDS | 55.0% |
| !! | GCTGCATCACAACTTGCTGC+TGG | + | chr5_3:6707978-6707997 | Msa0794810:CDS | 55.0% |
| !! | GCATCACAACTTGCTGCTGG+TGG | + | chr5_3:6707981-6708000 | Msa0794810:CDS | 55.0% |
| TGCTGCTGGTGGAACATCAC+CGG | + | chr5_3:6707992-6708011 | Msa0794810:CDS | 55.0% | |
| ACATTTCAGAGCCGTGGCTG+CGG | + | chr5_3:6708182-6708201 | Msa0794810:intron | 55.0% | |
| TCAACATTACTGGTCGGGGC+AGG | + | chr5_3:6708232-6708251 | Msa0794810:CDS | 55.0% | |
| ACAAGCCTAACTCGGCTTCG+CGG | + | chr5_3:6708292-6708311 | Msa0794810:CDS | 55.0% | |
| CTCCCTGGTCTGATGCTTCT+TGG | + | chr5_3:6708606-6708625 | Msa0794810:intron | 55.0% | |
| CTTGGAAGCCCTAGGGAAGA+TGG | + | chr5_3:6708624-6708643 | Msa0794810:intron | 55.0% | |
| GATGTGCACGTGCAGAATCG+TGG | - | chr5_3:6709173-6709192 | None:intergenic | 55.0% | |
| TCTGAGGGCCACAAACCCTA+TGG | - | chr5_3:6709501-6709520 | None:intergenic | 55.0% | |
| TAGGGTTTGTGGCCCTCAGA+AGG | + | chr5_3:6709501-6709520 | Msa0794810:intron | 55.0% | |
| CTACTGCTGCTGCTGAGAGT+GGG | + | chr5_3:6710748-6710767 | Msa0794810:CDS | 55.0% | |
| ! | TGAAGGCGTAGATCTCGGCA+CGG | + | chr5_3:6710794-6710813 | Msa0794810:CDS | 55.0% |
| CTCTCATTAGCCACTTCCGG+TGG | - | chr5_3:6710988-6711007 | None:intergenic | 55.0% | |
| TACAAGAGGCAAGCAAGGGG+AGG | + | chr5_3:6711202-6711221 | Msa0794810:three_prime_UTR | 55.0% | |
| ACAAGAGGCAAGCAAGGGGA+GGG | + | chr5_3:6711203-6711222 | Msa0794810:three_prime_UTR | 55.0% | |
| CACTGCCACCAACAGCACCT+TGG | - | chr5_3:6707512-6707531 | None:intergenic | 60.0% | |
| !! | CAAGGTGCTGTTGGTGGCAG+TGG | + | chr5_3:6707510-6707529 | Msa0794810:CDS | 60.0% |
| CCGCGTCTTGAAATGGGCGT+TGG | + | chr5_3:6707660-6707679 | Msa0794810:CDS | 60.0% | |
| GCTGCGGCAGCATTTGCGAT+GGG | + | chr5_3:6708198-6708217 | Msa0794810:CDS | 60.0% | |
| ATCTGCCGCGAAGCCGAGTT+AGG | - | chr5_3:6708300-6708319 | None:intergenic | 60.0% | |
| !! | GTGGTTTTGCCTGTGCTCCC+TGG | + | chr5_3:6708591-6708610 | Msa0794810:CDS | 60.0% |
| ! | AGCATCAGACCAGGGAGCAC+AGG | - | chr5_3:6708603-6708622 | None:intergenic | 60.0% |
| !! | CTGCGCTGGTGGTGGTGAAT+CGG | - | chr5_3:6710455-6710474 | None:intergenic | 60.0% |
| CAACAGAGAGACTGCGCTGG+TGG | - | chr5_3:6710466-6710485 | None:intergenic | 60.0% | |
| CACCAGCGCAGTCTCTCTGT+TGG | + | chr5_3:6710464-6710483 | Msa0794810:CDS | 60.0% | |
| CACCAACAGAGAGACTGCGC+TGG | - | chr5_3:6710469-6710488 | None:intergenic | 60.0% | |
| GCTGCCACTGTAGCCTGCAA+TGG | - | chr5_3:6710646-6710665 | None:intergenic | 60.0% | |
| AGTGGCAGCCTCACTTCTGC+TGG | + | chr5_3:6710657-6710676 | Msa0794810:CDS | 60.0% | |
| ! | AGGTGCTGCATCTGAGCAGC+AGG | + | chr5_3:6710686-6710705 | Msa0794810:CDS | 60.0% |
| GCTACTGCTGCTGCTGAGAG+TGG | + | chr5_3:6710747-6710766 | Msa0794810:CDS | 60.0% | |
| ! | GAAGGCGTAGATCTCGGCAC+GGG | + | chr5_3:6710795-6710814 | Msa0794810:CDS | 60.0% |
| AAGGCGTAGATCTCGGCACG+GGG | + | chr5_3:6710796-6710815 | Msa0794810:CDS | 60.0% | |
| CAAGAGGCAAGCAAGGGGAG+GGG | + | chr5_3:6711204-6711223 | Msa0794810:three_prime_UTR | 60.0% | |
| AAGAGGCAAGCAAGGGGAGG+GGG | + | chr5_3:6711205-6711224 | Msa0794810:three_prime_UTR | 60.0% | |
| !! | GCTGTTGGTGGCAGTGGTGC+TGG | + | chr5_3:6707516-6707535 | Msa0794810:CDS | 65.0% |
| !! | GTTGGTGGCAGTGGTGCTGG+TGG | + | chr5_3:6707519-6707538 | Msa0794810:CDS | 65.0% |
| CGCAAATGCTGCCGCAGCCA+CGG | - | chr5_3:6708196-6708215 | None:intergenic | 65.0% | |
| GGCTGCGGCAGCATTTGCGA+TGG | + | chr5_3:6708197-6708216 | Msa0794810:CDS | 65.0% | |
| ! | CAGAGAGACTGCGCTGGTGG+TGG | - | chr5_3:6710463-6710482 | None:intergenic | 65.0% |
| CTGGTCGGGGCAGGCCCGAA+AGG | + | chr5_3:6708241-6708260 | Msa0794810:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 6706754 | 6711747 | 6706754 | ID=Msa0794810;Name=Msa0794810 |
| chr5_3 | mRNA | 6706754 | 6711747 | 6706754 | ID=Msa0794810-mRNA-1;Parent=Msa0794810;Name=Msa0794810-mRNA-1;_AED=0.15;_eAED=0.15;_QI=342|0.88|0.9|1|0.77|0.7|10|459|711 |
| chr5_3 | exon | 6706754 | 6708069 | 6706754 | ID=Msa0794810-mRNA-1:exon:2721;Parent=Msa0794810-mRNA-1 |
| chr5_3 | exon | 6708191 | 6708379 | 6708191 | ID=Msa0794810-mRNA-1:exon:2722;Parent=Msa0794810-mRNA-1 |
| chr5_3 | exon | 6708526 | 6708612 | 6708526 | ID=Msa0794810-mRNA-1:exon:2723;Parent=Msa0794810-mRNA-1 |
| chr5_3 | exon | 6709802 | 6709981 | 6709802 | ID=Msa0794810-mRNA-1:exon:2724;Parent=Msa0794810-mRNA-1 |
| chr5_3 | exon | 6710064 | 6710164 | 6710064 | ID=Msa0794810-mRNA-1:exon:2725;Parent=Msa0794810-mRNA-1 |
| chr5_3 | exon | 6710315 | 6710572 | 6710315 | ID=Msa0794810-mRNA-1:exon:2726;Parent=Msa0794810-mRNA-1 |
| chr5_3 | exon | 6710652 | 6710817 | 6710652 | ID=Msa0794810-mRNA-1:exon:2727;Parent=Msa0794810-mRNA-1 |
| chr5_3 | exon | 6710906 | 6711103 | 6710906 | ID=Msa0794810-mRNA-1:exon:2728;Parent=Msa0794810-mRNA-1 |
| chr5_3 | exon | 6711192 | 6711242 | 6711192 | ID=Msa0794810-mRNA-1:exon:2729;Parent=Msa0794810-mRNA-1 |
| chr5_3 | exon | 6711357 | 6711747 | 6711357 | ID=Msa0794810-mRNA-1:exon:2730;Parent=Msa0794810-mRNA-1 |
| chr5_3 | five_prime_UTR | 6706754 | 6707095 | 6706754 | ID=Msa0794810-mRNA-1:five_prime_utr;Parent=Msa0794810-mRNA-1 |
| chr5_3 | CDS | 6707096 | 6708069 | 6707096 | ID=Msa0794810-mRNA-1:cds;Parent=Msa0794810-mRNA-1 |
| chr5_3 | CDS | 6708191 | 6708379 | 6708191 | ID=Msa0794810-mRNA-1:cds;Parent=Msa0794810-mRNA-1 |
| chr5_3 | CDS | 6708526 | 6708612 | 6708526 | ID=Msa0794810-mRNA-1:cds;Parent=Msa0794810-mRNA-1 |
| chr5_3 | CDS | 6709802 | 6709981 | 6709802 | ID=Msa0794810-mRNA-1:cds;Parent=Msa0794810-mRNA-1 |
| chr5_3 | CDS | 6710064 | 6710164 | 6710064 | ID=Msa0794810-mRNA-1:cds;Parent=Msa0794810-mRNA-1 |
| chr5_3 | CDS | 6710315 | 6710572 | 6710315 | ID=Msa0794810-mRNA-1:cds;Parent=Msa0794810-mRNA-1 |
| chr5_3 | CDS | 6710652 | 6710817 | 6710652 | ID=Msa0794810-mRNA-1:cds;Parent=Msa0794810-mRNA-1 |
| chr5_3 | CDS | 6710906 | 6711086 | 6710906 | ID=Msa0794810-mRNA-1:cds;Parent=Msa0794810-mRNA-1 |
| chr5_3 | three_prime_UTR | 6711087 | 6711103 | 6711087 | ID=Msa0794810-mRNA-1:three_prime_utr;Parent=Msa0794810-mRNA-1 |
| chr5_3 | three_prime_UTR | 6711192 | 6711242 | 6711192 | ID=Msa0794810-mRNA-1:three_prime_utr;Parent=Msa0794810-mRNA-1 |
| chr5_3 | three_prime_UTR | 6711357 | 6711747 | 6711357 | ID=Msa0794810-mRNA-1:three_prime_utr;Parent=Msa0794810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
