AlfalfaGEDB | Msa1464640

M. sativa cultivar zhongmu-4 / Msa1464640

KEGG: K14486
GO: GO:0000003 GO:0001708 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009850 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010022 GO:0010033 GO:0010050 GO:0010073 GO:0010158 GO:0010468 GO:0010556 GO:0010582 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042445 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1464640	XP_003593664.1	97.771	628	11	2	1	626	56	682	0.0	1269

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1464640	sp\|O23661\|ARFC_ARATH	60.907	463	146	4	1	460	57	487	0.0	576

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1464640	A2Q532	97.771	628	11	2	1	626	56	682	0.0	1269

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TFs/TRs:

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Gene ID	Type	Classification
Msa1464640	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0110970	Msa1464640	0.812475	4.160620e-51	-8.615850e-47
Msa0234600	Msa1464640	0.955526	2.475410e-113	-8.615850e-47
Msa0313410	Msa1464640	0.948588	7.008663e-107	-8.615850e-47
Msa0339320	Msa1464640	0.805375	1.376187e-49	-8.615850e-47
Msa0380210	Msa1464640	0.801025	1.093979e-48	-8.615850e-47
Msa0524190	Msa1464640	0.801379	9.257004e-49	-8.615850e-47
Msa0575570	Msa1464640	0.802783	4.763040e-49	-8.615850e-47
Msa0749740	Msa1464640	0.820661	6.096637e-53	-8.615850e-47
Msa0750090	Msa1464640	0.814491	1.499739e-51	-8.615850e-47
Msa0794810	Msa1464640	0.815888	7.340616e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1464640	MtrunA17_Chr4g0046371	68.069	642	156	17	1	624	41	651	0.0	815
Msa1464640	MtrunA17_Chr2g0282961	97.468	395	9	1	1	395	56	449	0.0	779
Msa1464640	MtrunA17_Chr2g0282961	85.202	223	22	5	414	626	392	613	2.44e-119	367
Msa1464640	MtrunA17_Chr4g0029671	51.055	474	212	9	1	457	57	527	4.34e-146	442
Msa1464640	MtrunA17_Chr2g0326281	40.276	653	323	17	1	618	59	679	4.12e-138	422
Msa1464640	MtrunA17_Chr8g0385791	48.492	398	185	3	1	387	62	450	8.40e-119	373
Msa1464640	MtrunA17_Chr2g0276781	49.025	359	166	3	1	352	26	374	1.26e-110	347
Msa1464640	MtrunA17_Chr4g0009751	45.137	401	195	7	2	393	23	407	5.88e-108	338
Msa1464640	MtrunA17_Chr5g0433301	48.421	380	158	6	1	361	27	387	8.84e-106	338
Msa1464640	MtrunA17_Chr4g0070181	51.026	341	149	3	1	333	26	356	7.34e-105	342

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1464640	AT2G33860.1	60.907	463	146	4	1	460	57	487	0.0	576
Msa1464640	AT2G33860.2	59.945	362	110	4	102	460	1	330	7.08e-146	431
Msa1464640	AT5G60450.2	48.739	476	214	9	1	457	44	508	5.09e-138	421
Msa1464640	AT5G60450.1	48.739	476	214	9	1	457	68	532	1.03e-137	421
Msa1464640	AT5G62000.2	45.542	415	205	4	1	403	64	469	3.53e-115	364
Msa1464640	AT5G62000.5	45.542	415	205	4	1	403	64	469	3.53e-115	364
Msa1464640	AT5G62000.3	45.542	415	205	4	1	403	64	469	3.53e-115	364
Msa1464640	AT5G62000.1	45.542	415	205	4	1	403	64	469	3.53e-115	364
Msa1464640	AT5G62000.4	45.542	415	205	4	1	403	64	469	4.50e-115	364
Msa1464640	AT1G59750.2	49.412	340	155	3	1	333	25	354	3.06e-107	338

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Find 176 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGGCTGCAGACTCTT+CGG	0.383825	tig0044473:+3646	Msa1464640:CDS
AAAAGTTCTGGTTCCTTTGG+AGG	0.403391	tig0044473:+1683	Msa1464640:CDS
AAACTGGATTAACAGCCTGC+TGG	0.529156	tig0044473:-3390	None:intergenic
AAACTGGCTGCAGACTCTTC+GGG	0.411738	tig0044473:+3647	Msa1464640:CDS
AAAGTTCTGGTTCCTTTGGA+GGG	0.508492	tig0044473:+1684	Msa1464640:CDS
AAATATCAGAATGCAGCCGG+CGG	0.679146	tig0044473:+3099	Msa1464640:CDS
AACGAGGCTCGTCCGTAGGG+TGG	0.505344	tig0044473:-3208	None:intergenic
AACTGAGACTAGGGATTCGT+AGG	0.539200	tig0044473:+1648	Msa1464640:CDS
AATAAGAAGAAGCTTGTGTC+TGG	0.529144	tig0044473:+1511	Msa1464640:CDS
AATAATAATAATTTGTTGGA+TGG	0.408057	tig0044473:+3565	Msa1464640:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTTTGGTAAAGAGATCAA+AGG	-	tig0044473:21-40	None:intergenic	30.0%
TTGATCTCTTTACCAAAGAA+AGG	+	tig0044473:21-40	Msa1464640:CDS	30.0%
GGAAAATTGATTGTGAGAAA+AGG	+	tig0044473:242-261	Msa1464640:intron	30.0%
GTTCATTCAAACAAAAAAGG+AGG	-	tig0044473:307-326	None:intergenic	30.0%
CTCCAAAAGAACAATAAACT+AGG	-	tig0044473:368-387	None:intergenic	30.0%
CTTGGATGAAATTGTGAAAA+AGG	+	tig0044473:556-575	Msa1464640:intron	30.0%
TCATATGTGAAAATTACCAG+GGG	-	tig0044473:1033-1052	None:intergenic	30.0%
CATCATATGTGAAAATTACC+AGG	-	tig0044473:1035-1054	None:intergenic	30.0%
CAAATTCATAATGCTACCAA+AGG	-	tig0044473:1245-1264	None:intergenic	30.0%
TTATTGATATATTAGGGGTG+AGG	+	tig0044473:1619-1638	Msa1464640:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0044473	gene	3	3708	3	ID=Msa1464640;Name=Msa1464640
tig0044473	mRNA	3	3708	3	ID=Msa1464640-mRNA-1;Parent=Msa1464640;Name=Msa1464640-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|1\|0.8\|1\|1\|1\|10\|0\|626
tig0044473	exon	3	158	3	ID=Msa1464640-mRNA-1:exon:24522;Parent=Msa1464640-mRNA-1
tig0044473	exon	454	510	454	ID=Msa1464640-mRNA-1:exon:24523;Parent=Msa1464640-mRNA-1
tig0044473	exon	853	1035	853	ID=Msa1464640-mRNA-1:exon:24524;Parent=Msa1464640-mRNA-1
tig0044473	exon	1288	1372	1288	ID=Msa1464640-mRNA-1:exon:24525;Parent=Msa1464640-mRNA-1
tig0044473	exon	1464	1554	1464	ID=Msa1464640-mRNA-1:exon:24526;Parent=Msa1464640-mRNA-1
tig0044473	exon	1634	1798	1634	ID=Msa1464640-mRNA-1:exon:24527;Parent=Msa1464640-mRNA-1
tig0044473	exon	1905	2024	1905	ID=Msa1464640-mRNA-1:exon:24528;Parent=Msa1464640-mRNA-1
tig0044473	exon	2106	2181	2106	ID=Msa1464640-mRNA-1:exon:24529;Parent=Msa1464640-mRNA-1
tig0044473	exon	2667	2829	2667	ID=Msa1464640-mRNA-1:exon:24530;Parent=Msa1464640-mRNA-1
tig0044473	exon	2924	3708	2924	ID=Msa1464640-mRNA-1:exon:24531;Parent=Msa1464640-mRNA-1
tig0044473	CDS	3	158	3	ID=Msa1464640-mRNA-1:cds;Parent=Msa1464640-mRNA-1
tig0044473	CDS	454	510	454	ID=Msa1464640-mRNA-1:cds;Parent=Msa1464640-mRNA-1
tig0044473	CDS	853	1035	853	ID=Msa1464640-mRNA-1:cds;Parent=Msa1464640-mRNA-1
tig0044473	CDS	1288	1372	1288	ID=Msa1464640-mRNA-1:cds;Parent=Msa1464640-mRNA-1
tig0044473	CDS	1464	1554	1464	ID=Msa1464640-mRNA-1:cds;Parent=Msa1464640-mRNA-1
tig0044473	CDS	1634	1798	1634	ID=Msa1464640-mRNA-1:cds;Parent=Msa1464640-mRNA-1
tig0044473	CDS	1905	2024	1905	ID=Msa1464640-mRNA-1:cds;Parent=Msa1464640-mRNA-1
tig0044473	CDS	2106	2181	2106	ID=Msa1464640-mRNA-1:cds;Parent=Msa1464640-mRNA-1
tig0044473	CDS	2667	2829	2667	ID=Msa1464640-mRNA-1:cds;Parent=Msa1464640-mRNA-1
tig0044473	CDS	2924	3708	2924	ID=Msa1464640-mRNA-1:cds;Parent=Msa1464640-mRNA-1

Gene Sequence

>Msa1464640

CATGCTTGTGCTGGTCCTTTGATCTCTTTACCAAAGAAAGGAAGCATTGTTGTTTATGTTCCACAAGGACACTTTGAACAAGCTCATGATTTTCCTGTTTCTGCTTGTAATATTCCACCTCATGTTTTCTGTCGTGTTCTTGATGTTAAGCTTCATGCTGAGGAAGGAAGTGATGAAGTGTATTGTCAAGTCTTGTTGGTTCCTGAAAATCAGCAAGTGGAGCAAAATGTTCGGGAAGGGGTAATTGATGCTGATGCGGAAGAGGAGGATACTGAAGCTATTGTGAAGTCAACAACACCCCATATGTTCTGCAAGACTCTCACAGCTTCTGACACTAGCACTCATGGAGGATTCTCAGTGCCTCGTCGAGCTGCTGAAGACTGCTTTCCTCCCCTGGATTACAGCCAGCAGAGGCCTTCACAAGAGCTTGTAGCAAAGGATCTGCATGGCTCGGAGTGGAGGTTCCGGCATATATACAGGGGACAGCCAAGGAGGCATTTGCTCACAACTGGGTGGAGTGCATTTGTTAATAAGAAGAAGCTTGTGTCTGGTGATGCTGTGTTGTTTCTTAGGGGTGAGGATGGAGAACTGAGACTAGGGATTCGTAGGGCGGTGCAGTTGAAAAGTTCTGGTTCCTTTGGAGGGTCCTCTGGTATGCAATTGGATCCTGGCTCTCTCATGGATGTTGTGAATGCTTTATCTAAAAGATCTGCATTTAGTGTTTGCTATAATCCAAGGGTCAGTTCTTCGGAATTCATCATACCTGTCAACAAGTTCTTGAAGAGCCTTGATTGTTCTTATTCTGCTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAGCGAAGGTTCACTGGATTAATTGCTGGAATAAGTGATGTGGATCCTGTTAGATGGCCAGGATCAAAATGGAAATGCCTATTGGTAAGGTGGGATGATATAGAGGCATCAAGGCATAATAATAGGGTTTCCCCATGGGAAATCGAGCCATCTGGTTCTGCTTCCAATTCCAGTAACCTGATGGCAGCTAGTTTGAAGAGGACCAGGATTGGATTTACTTCATCAAAGCTAGAATTTCCAGTTCCAAATGGGATTGGAGCGTCAGACTTTGGGGAATCATTAAGATTCCGAAAGGTCTTGCAAGGTCAAGAAATTATGGGCATGAATACTCCCTATGACAGTATTAATGCTCAAAGTCCCCGGTTATATGAGCTAGGGAGGTGCTATCCCGGTTCAAACTGTTCCGGGATTGCTGCAACAGGAAATATCAGAATGCAGCCGGCGGCTTCTGATTTTCCCTGTAACGGCATAGGCTTTGGTGAATCTTTCAGATTCCAAAAGGTCTTGCAAGGTCAAGAAATTCTTCCGTGCCCACCCTACGGACGAGCCTCGTTTGACGAGGCCCGTGGAAGTGGTTGTGTTGGACGTTATGATGGTTATCCAATGCTCGGGTCCAGAAATGGATGGCCTGCACAGATGCATGACGCTGCTTCACATTTGCATGCATCTGTTACATCTGGACAAGTTTCGTCTCCATCATCTGTGTTAATGTTCCAGCAGGCTGTTAATCCAGTTTCAAACTCTCGGTATGATAATATTAATCTCAATCAGGGTTCATACATATCTGAAGCTAAAAGTGGAATGTTTGCGCCTTCCCACAAGCCTATTTTATCTAGTGGACTAGCTCTGGAAGGCACAACTTCTTTTGGTGTGCATGATTTTCATAATAATAATAATAATTTGTTGGATGGTTCAAGGTCTCGTGATTCAGTGTTAGCGATGAGAGACAATCAAGATATGGTTTCTTGTAAAACTGGCTGCAGACTCTTCGGGTTTTCATTAACCGATGACACACACATTGGCGGAGGTTGA

Protein sequence

>Msa1464640

HACAGPLISLPKKGSIVVYVPQGHFEQAHDFPVSACNIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPENQQVEQNVREGVIDADAEEEDTEAIVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGSEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAVQLKSSGSFGGSSGMQLDPGSLMDVVNALSKRSAFSVCYNPRVSSSEFIIPVNKFLKSLDCSYSAGMRFRMRFETEDAAERRFTGLIAGISDVDPVRWPGSKWKCLLVRWDDIEASRHNNRVSPWEIEPSGSASNSSNLMAASLKRTRIGFTSSKLEFPVPNGIGASDFGESLRFRKVLQGQEIMGMNTPYDSINAQSPRLYELGRCYPGSNCSGIAATGNIRMQPAASDFPCNGIGFGESFRFQKVLQGQEILPCPPYGRASFDEARGSGCVGRYDGYPMLGSRNGWPAQMHDAASHLHASVTSGQVSSPSSVLMFQQAVNPVSNSRYDNINLNQGSYISEAKSGMFAPSHKPILSSGLALEGTTSFGVHDFHNNNNNLLDGSRSRDSVLAMRDNQDMVSCKTGCRLFGFSLTDDTHIGGG*