AlfalfaGEDB | Msa0876170

M. sativa cultivar zhongmu-4 / Msa0876170

KEGG: K02908
GO: GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF01248.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0876170	XP_013443288.1	100.000	112	0	0	1	112	1	112	1.96e-75	228

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0876170	sp\|O49884\|RL30_LUPLU	97.321	112	3	0	1	112	1	112	9.56e-77	224

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0876170	A0A072TK88	100.000	112	0	0	1	112	1	112	9.35e-76	228

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa0876170	0.812466	4.181044e-51	-8.615850e-47
Msa0002790	Msa0876170	0.845073	5.097868e-59	-8.615850e-47
Msa0003870	Msa0876170	0.812618	3.872284e-51	-8.615850e-47
Msa0022970	Msa0876170	0.823446	1.379482e-53	-8.615850e-47
Msa0032810	Msa0876170	0.800659	1.298929e-48	-8.615850e-47
Msa0038090	Msa0876170	0.809706	1.657166e-50	-8.615850e-47
Msa0045730	Msa0876170	0.861699	8.538722e-64	-8.615850e-47
Msa0086750	Msa0876170	0.812991	3.208739e-51	-8.615850e-47
Msa0114570	Msa0876170	0.823556	1.299556e-53	-8.615850e-47
Msa0116130	Msa0876170	0.860669	1.758315e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0876170	MtrunA17_Chr6g0457261	100.000	112	0	1	112	1	112	1.80e-79	228
Msa0876170	MtrunA17_Chr7g0221511	98.214	112	2	1	112	1	112	3.19e-78	225
Msa0876170	MtrunA17_Chr5g0441211	91.071	112	10	1	112	1	112	2.21e-73	213

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0876170	AT1G36240.1	86.607	112	15	1	112	1	112	7.44e-71	207
Msa0876170	AT1G77940.1	86.607	112	15	1	112	1	112	2.04e-70	206
Msa0876170	AT3G18740.1	85.714	112	16	1	112	1	112	7.46e-70	204

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Find 46 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGTTCTCAAATCTCTC+AGG	0.530584	6_1:-13967639	Msa0876170:CDS
AAATCTCTCAGGAACAACAA+AGG	0.657253	6_1:-13967628	Msa0876170:intron
AAGAGTGGGAAGTATACTTT+GGG	0.352366	6_1:-13967667	Msa0876170:CDS
AATATACCGATGCTGACAGG+CGG	0.649312	6_1:+13964003	None:intergenic
AATATCCCGCCTGTCAGCAT+CGG	0.612440	6_1:-13964009	Msa0876170:three_prime_UTR
AATTCCTCTGGCACGATCAC+AGG	0.466184	6_1:+13963979	None:intergenic
ACTCTATTGGTCTCCAGGTA+TGG	0.504048	6_1:+13964375	None:intergenic
ACTTGATGCAACAACTCTAT+TGG	0.430553	6_1:+13964362	None:intergenic
AGAGTGGGAAGTATACTTTG+GGG	0.808421	6_1:-13967666	Msa0876170:CDS
ATATACCGATGCTGACAGGC+GGG	0.600044	6_1:+13964004	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTGTTGTTAATAGACTCAT+GGG	+	chr6_1:13964227-13964246	None:intergenic	30.0%
GAAACATAATTGCAGTGAAT+AGG	-	chr6_1:13965064-13965083	Msa0876170:intron	30.0%
AGGAGTAAGTTTGTAATTTG+TGG	-	chr6_1:13965578-13965597	Msa0876170:intron	30.0%
AATATACAACATACAGCTCA+TGG	+	chr6_1:13965855-13965874	None:intergenic	30.0%
ATAGTGCATTATATCAAGTG+GGG	+	chr6_1:13966299-13966318	None:intergenic	30.0%
TTGATATGTGTTGAAACAAC+AGG	+	chr6_1:13966369-13966388	None:intergenic	30.0%
TCAACACCATTAACAAATTG+AGG	+	chr6_1:13966653-13966672	None:intergenic	30.0%
AAGTTAACAATAGTCTAGCT+AGG	+	chr6_1:13966717-13966736	None:intergenic	30.0%
TAACTTAAAATGGCTGTTGT+TGG	-	chr6_1:13966731-13966750	Msa0876170:intron	30.0%
TAAATGTCAAATTCCTGATG+TGG	+	chr6_1:13967242-13967261	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	13963994	13967957	13963994	ID=Msa0876170;Name=Msa0876170
chr6_1	mRNA	13963994	13967957	13963994	ID=Msa0876170-mRNA-1;Parent=Msa0876170;Name=Msa0876170-mRNA-1;_AED=0.03;_eAED=0.03;_QI=91\|1\|1\|1\|1\|1\|5\|384\|112
chr6_1	exon	13963994	13964418	13963994	ID=Msa0876170-mRNA-1:exon:4023;Parent=Msa0876170-mRNA-1
chr6_1	exon	13964505	13964573	13964505	ID=Msa0876170-mRNA-1:exon:4022;Parent=Msa0876170-mRNA-1
chr6_1	exon	13965866	13965967	13965866	ID=Msa0876170-mRNA-1:exon:4021;Parent=Msa0876170-mRNA-1
chr6_1	exon	13967629	13967734	13967629	ID=Msa0876170-mRNA-1:exon:4020;Parent=Msa0876170-mRNA-1
chr6_1	exon	13967846	13967957	13967846	ID=Msa0876170-mRNA-1:exon:4019;Parent=Msa0876170-mRNA-1
chr6_1	five_prime_UTR	13967867	13967957	13967867	ID=Msa0876170-mRNA-1:five_prime_utr;Parent=Msa0876170-mRNA-1
chr6_1	CDS	13967846	13967866	13967846	ID=Msa0876170-mRNA-1:cds;Parent=Msa0876170-mRNA-1
chr6_1	CDS	13967629	13967734	13967629	ID=Msa0876170-mRNA-1:cds;Parent=Msa0876170-mRNA-1
chr6_1	CDS	13965866	13965967	13965866	ID=Msa0876170-mRNA-1:cds;Parent=Msa0876170-mRNA-1
chr6_1	CDS	13964505	13964573	13964505	ID=Msa0876170-mRNA-1:cds;Parent=Msa0876170-mRNA-1
chr6_1	CDS	13964378	13964418	13964378	ID=Msa0876170-mRNA-1:cds;Parent=Msa0876170-mRNA-1
chr6_1	three_prime_UTR	13963994	13964377	13963994	ID=Msa0876170-mRNA-1:three_prime_utr;Parent=Msa0876170-mRNA-1

Gene Sequence	>Msa0876170 ATGGTTGCAGCAAAGAAAACCAAGAAGACCCATGAGTCTATTAACAACAGACTCGCTCTTGTGATGAAGAGTGGGAAGTATACTTTGGGGTACAAAACTGTTCTCAAATCTCTCAGGAACAACAAAGGGAAATTGATTATCATTGCTAACAATTGCCCACCATTGAGGAAGTCCGAGATTGAGTACTATGCTATGTTGGCGAAGGTTGGAGTTCATCACTACAACGGGAACAATGTGGACCTCGGCACTGCTTGCGGAAAATACTACAGAGTGTGTTGTCTCAGCATTGTTGATCCTGGTGATTCGGACATCATCAAGACCATACCTGGAGACCAATAG
Protein sequence	>Msa0876170 MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRNNKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTIPGDQ*