AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0876170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876170 MtrunA17_Chr6g0457261 100.000 112 0 0 1 112 1 112 1.80e-79 228
Msa0876170 MtrunA17_Chr7g0221511 98.214 112 2 0 1 112 1 112 3.19e-78 225
Msa0876170 MtrunA17_Chr5g0441211 91.071 112 10 0 1 112 1 112 2.21e-73 213
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876170 AT1G36240.1 86.607 112 15 0 1 112 1 112 7.44e-71 207
Msa0876170 AT1G77940.1 86.607 112 15 0 1 112 1 112 2.04e-70 206
Msa0876170 AT3G18740.1 85.714 112 16 0 1 112 1 112 7.46e-70 204

Find 46 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTCGTCTCCAACAAAATT+AGG 0.156476 6_1:-13967924 Msa0876170:five_prime_UTR
TGTGGACTTCCGGAAGTATT+TGG 0.200752 6_1:-13964268 Msa0876170:three_prime_UTR
TTGCATCAAGTCCTCGATTT+TGG 0.269509 6_1:-13964350 Msa0876170:three_prime_UTR
CTGCAACCATGGTTGAAGTT+AGG 0.269517 6_1:+13967857 None:intergenic
AAGAGTGGGAAGTATACTTT+GGG 0.352366 6_1:-13967667 Msa0876170:CDS
TCGAAATTTATGTGGACTTC+CGG 0.356319 6_1:-13964278 Msa0876170:three_prime_UTR
CTCGAATATCCAAATACTTC+CGG 0.358485 6_1:+13964259 None:intergenic
TGTCGTCTCCAACAAAATTA+GGG 0.362374 6_1:-13967923 Msa0876170:five_prime_UTR
TGAAGTTAGGGTATGCGAAT+AGG 0.393915 6_1:+13967870 None:intergenic
GAAGTTAGGGTATGCGAATA+GGG 0.402408 6_1:+13967871 None:intergenic
TGCAACCATGGTTGAAGTTA+GGG 0.418931 6_1:+13967858 None:intergenic
CAAATAAAGAGTTGAGATCA+TGG 0.421521 6_1:-13964036 Msa0876170:three_prime_UTR
ACTTGATGCAACAACTCTAT+TGG 0.430553 6_1:+13964362 None:intergenic
GAAGAGTGGGAAGTATACTT+TGG 0.438081 6_1:-13967668 Msa0876170:CDS
TTGGAGTTCATCACTACAAC+GGG 0.460582 6_1:-13965867 Msa0876170:CDS
AATTCCTCTGGCACGATCAC+AGG 0.466184 6_1:+13963979 None:intergenic
TTTGCTTATCGAAATTTATG+TGG 0.481654 6_1:-13964286 Msa0876170:three_prime_UTR
CAACAACTCTATTGGTCTCC+AGG 0.486404 6_1:+13964370 None:intergenic
GACATCATCAAGACCATACC+TGG 0.503017 6_1:-13964388 Msa0876170:CDS
ACTCTATTGGTCTCCAGGTA+TGG 0.504048 6_1:+13964375 None:intergenic
TGTCTCAGCATTGTTGATCC+TGG 0.506683 6_1:-13964504 Msa0876170:intron
GTCTGTTGTTAATAGACTCA+TGG 0.514949 6_1:+13967704 None:intergenic
TATGCTATGTTGGCGAAGGT+TGG 0.517939 6_1:-13965886 Msa0876170:CDS
ATCTCGGACTTCCTCAATGG+TGG 0.525281 6_1:+13965916 None:intergenic
CTCGCTCTTGTGATGAAGAG+TGG 0.527491 6_1:-13967682 Msa0876170:CDS
TCAATCTCGGACTTCCTCAA+TGG 0.529674 6_1:+13965913 None:intergenic
AAACTGTTCTCAAATCTCTC+AGG 0.530584 6_1:-13967639 Msa0876170:CDS
GTGGACCTCGGCACTGCTTG+CGG 0.537789 6_1:-13964546 Msa0876170:CDS
GGTAATATACCGATGCTGAC+AGG 0.542840 6_1:+13964000 None:intergenic
CTAACAATTGCCCACCATTG+AGG 0.560937 6_1:-13965927 Msa0876170:CDS
TCGCTCTTGTGATGAAGAGT+GGG 0.561153 6_1:-13967681 Msa0876170:CDS
CATAGCATAGTACTCAATCT+CGG 0.571083 6_1:+13965900 None:intergenic
GCATACCCTAACTTCAACCA+TGG 0.576745 6_1:-13967863 Msa0876170:exon
GATTGAGTACTATGCTATGT+TGG 0.583486 6_1:-13965896 Msa0876170:CDS
TCTGTTGTTAATAGACTCAT+GGG 0.588441 6_1:+13967705 None:intergenic
TCTCGGACTTCCTCAATGGT+GGG 0.591390 6_1:+13965917 None:intergenic
ATATACCGATGCTGACAGGC+GGG 0.600044 6_1:+13964004 None:intergenic
CTTATAGACAATGTGGACCT+CGG 0.603044 6_1:-13964558 Msa0876170:intron
AATATCCCGCCTGTCAGCAT+CGG 0.612440 6_1:-13964009 Msa0876170:three_prime_UTR
CATGAAGAAGTTAGTTGTCG+AGG 0.613481 6_1:+13964083 None:intergenic
TTTCTTGCTTATAGACAATG+TGG 0.618691 6_1:-13964565 Msa0876170:intron
GTACTATGCTATGTTGGCGA+AGG 0.638030 6_1:-13965890 Msa0876170:CDS
AATATACCGATGCTGACAGG+CGG 0.649312 6_1:+13964003 None:intergenic
AAATCTCTCAGGAACAACAA+AGG 0.657253 6_1:-13967628 Msa0876170:intron
GTTGGAGTTCATCACTACAA+CGG 0.670664 6_1:-13965868 Msa0876170:CDS
AGAGTGGGAAGTATACTTTG+GGG 0.808421 6_1:-13967666 Msa0876170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAAATTCGATTTTTTT+TGG - chr6_1:13964442-13964461 Msa0876170:intron 10.0%
!!! ATTTTTATTTTATGAATAGA+TGG - chr6_1:13964558-13964577 Msa0876170:intron 10.0%
!!! TTTTTATTTTATGAATAGAT+GGG - chr6_1:13964559-13964578 Msa0876170:intron 10.0%
!!! TTAATAATTTTGTTTTGATT+CGG - chr6_1:13965662-13965681 Msa0876170:intron 10.0%
!! AAAAAAAGGTTTATAATATT+GGG + chr6_1:13965904-13965923 None:intergenic 10.0%
!! AAAAAAAAGGTTTATAATAT+TGG + chr6_1:13965905-13965924 None:intergenic 10.0%
!!! AAATTTTAAGAGATAAAAAT+AGG + chr6_1:13966922-13966941 None:intergenic 10.0%
!!! TTTGATTTTGATTCTTAATT+TGG - chr6_1:13964186-13964205 Msa0876170:three_prime_UTR 15.0%
!!! TTTTTAAGAATGAATGTTTT+TGG - chr6_1:13964938-13964957 Msa0876170:intron 15.0%
!!! TAATAATTTTGTTTTGATTC+GGG - chr6_1:13965663-13965682 Msa0876170:intron 15.0%
!!! TTTTTTAAGAATCATTAGTT+TGG - chr6_1:13965760-13965779 Msa0876170:intron 15.0%
!! TATAAACACTAAATGATTAA+TGG - chr6_1:13966128-13966147 Msa0876170:intron 15.0%
!! ATAAACACTAAATGATTAAT+GGG - chr6_1:13966129-13966148 Msa0876170:intron 15.0%
!!! TTATTTTATATTCTGTTTTC+AGG - chr6_1:13967511-13967530 Msa0876170:intron 15.0%
!!! AAATGAGGTTTTTATAGTTT+TGG - chr6_1:13964585-13964604 Msa0876170:intron 20.0%
!! ATGTTCTATAAAATTGAAGT+TGG - chr6_1:13964971-13964990 Msa0876170:intron 20.0%
!!! ATGAATGAATGTTTTTAGAA+TGG - chr6_1:13965133-13965152 Msa0876170:intron 20.0%
!!! TGAATGAATGTTTTTAGAAT+GGG - chr6_1:13965134-13965153 Msa0876170:intron 20.0%
!! CAATAATTTCAAATCTAATC+GGG + chr6_1:13965174-13965193 None:intergenic 20.0%
!! CCAATAATTTCAAATCTAAT+CGG + chr6_1:13965175-13965194 None:intergenic 20.0%
!! AATATTGTTTGTAACTATTG+TGG - chr6_1:13965281-13965300 Msa0876170:intron 20.0%
!!! TGTTTTTTGTTAGATGTTAT+AGG - chr6_1:13965478-13965497 Msa0876170:intron 20.0%
!!! ATTCTTAAGAATGAAAGTTT+TGG - chr6_1:13965533-13965552 Msa0876170:intron 20.0%
!!! TTCTTAAGAATGAAAGTTTT+GGG - chr6_1:13965534-13965553 Msa0876170:intron 20.0%
!!! GAAATTGTTGATTTAATCAA+TGG - chr6_1:13965816-13965835 Msa0876170:intron 20.0%
!!! AACCTTTTTTTTAACTATTG+TGG - chr6_1:13965913-13965932 Msa0876170:CDS 20.0%
!!! ACCTTTTTTTTAACTATTGT+GGG - chr6_1:13965914-13965933 Msa0876170:CDS 20.0%
!! AGACTATTGTTAACTTAAAA+TGG - chr6_1:13966721-13966740 Msa0876170:intron 20.0%
!!! TTTGACATTTTCATTGTTTT+CGG + chr6_1:13967014-13967033 None:intergenic 20.0%
!! TAATGCATTCTTAGAAATAA+AGG + chr6_1:13967046-13967065 None:intergenic 20.0%
!!! TCTGATTTTTAGCATTTGTT+TGG - chr6_1:13964356-13964375 Msa0876170:three_prime_UTR 25.0%
!!! TTCTAGCTCAATTGAATTAA+TGG - chr6_1:13964382-13964401 Msa0876170:CDS 25.0%
!! TCTAGCTCAATTGAATTAAT+GGG - chr6_1:13964383-13964402 Msa0876170:CDS 25.0%
!!! TTATTTTATGAATAGATGGG+AGG - chr6_1:13964562-13964581 Msa0876170:intron 25.0%
!!! AGGTTTTTATAGTTTTGGAT+GGG - chr6_1:13964590-13964609 Msa0876170:intron 25.0%
! TATTATTCATAAGCTTGTCA+AGG + chr6_1:13964805-13964824 None:intergenic 25.0%
! TACAAAATCCAATGAATGTT+GGG + chr6_1:13965093-13965112 None:intergenic 25.0%
! ATACAAAATCCAATGAATGT+TGG + chr6_1:13965094-13965113 None:intergenic 25.0%
!! CCGATTAGATTTGAAATTAT+TGG - chr6_1:13965172-13965191 Msa0876170:intron 25.0%
!! AAATTATTGGTCTCTTTGAT+TGG - chr6_1:13965185-13965204 Msa0876170:intron 25.0%
!! AATTATTGGTCTCTTTGATT+GGG - chr6_1:13965186-13965205 Msa0876170:intron 25.0%
! AAGCAATGTTTAATGTATTC+AGG - chr6_1:13965352-13965371 Msa0876170:intron 25.0%
! GTTTAATGTATTCAGGAAAA+TGG - chr6_1:13965359-13965378 Msa0876170:intron 25.0%
!!! GGGAAGAATGAATTTAATTT+TGG - chr6_1:13965433-13965452 Msa0876170:intron 25.0%
!!! TTAATTTTGGTTGTGAAATC+TGG - chr6_1:13965446-13965465 Msa0876170:intron 25.0%
!!! TTGAGATTTATGGTTTTTTC+AGG - chr6_1:13965558-13965577 Msa0876170:intron 25.0%
!! TTAGTTTGGTTTCGTAAATA+TGG - chr6_1:13965774-13965793 Msa0876170:intron 25.0%
! ATTTAATCAATGGAGAAATG+TGG - chr6_1:13965826-13965845 Msa0876170:intron 25.0%
! ACCCACAATAGTTAAAAAAA+AGG + chr6_1:13965918-13965937 None:intergenic 25.0%
!!! TGACTTTTTCGATTTTATTC+AGG - chr6_1:13965962-13965981 Msa0876170:intron 25.0%
!!! GACTTTTTCGATTTTATTCA+GGG - chr6_1:13965963-13965982 Msa0876170:intron 25.0%
! AATAGTGCATTATATCAAGT+GGG + chr6_1:13966300-13966319 None:intergenic 25.0%
! TAATAGTGCATTATATCAAG+TGG + chr6_1:13966301-13966320 None:intergenic 25.0%
!!! TTACTTCCTCAATTTGTTAA+TGG - chr6_1:13966644-13966663 Msa0876170:intron 25.0%
!! AGATTTTTCGTTGCAATATT+AGG - chr6_1:13966871-13966890 Msa0876170:intron 25.0%
! TTGTTATCACAAAGTAAACA+GGG + chr6_1:13966897-13966916 None:intergenic 25.0%
! ATTGTTATCACAAAGTAAAC+AGG + chr6_1:13966898-13966917 None:intergenic 25.0%
!!! GTTAGTTTAACTTGTTAACA+AGG - chr6_1:13966945-13966964 Msa0876170:intron 25.0%
! TAAAATAACAACAGCAACAA+AGG + chr6_1:13967304-13967323 None:intergenic 25.0%
! TTTGCTTATCGAAATTTATG+TGG - chr6_1:13967643-13967662 Msa0876170:CDS 25.0%
TCTGTTGTTAATAGACTCAT+GGG + chr6_1:13964227-13964246 None:intergenic 30.0%
!!! GAGGTTTTTATAGTTTTGGA+TGG - chr6_1:13964589-13964608 Msa0876170:intron 30.0%
!!! TTTATAGTTTTGGATGGGTT+TGG - chr6_1:13964595-13964614 Msa0876170:intron 30.0%
!!! TTATAGTTTTGGATGGGTTT+GGG - chr6_1:13964596-13964615 Msa0876170:intron 30.0%
!! GATATATGGCTTTTGGAAAT+GGG - chr6_1:13964626-13964645 Msa0876170:intron 30.0%
!! ATATATGGCTTTTGGAAATG+GGG - chr6_1:13964627-13964646 Msa0876170:intron 30.0%
!! TGTGAATTTGAGTTTTGTGT+CGG - chr6_1:13964664-13964683 Msa0876170:intron 30.0%
! CAATTTTCCTGCAACATTAA+GGG + chr6_1:13964895-13964914 None:intergenic 30.0%
GAAACATAATTGCAGTGAAT+AGG - chr6_1:13965064-13965083 Msa0876170:intron 30.0%
!!! TGTTTTTAGAATGGGAAATG+TGG - chr6_1:13965142-13965161 Msa0876170:intron 30.0%
!! TGTTGTATTGATTGACTTTG+AGG - chr6_1:13965388-13965407 Msa0876170:intron 30.0%
!!! AGATTGGTTTTGTATGGATT+TGG - chr6_1:13965411-13965430 Msa0876170:intron 30.0%
!!! GATTGGTTTTGTATGGATTT+GGG - chr6_1:13965412-13965431 Msa0876170:intron 30.0%
!!! ATTGGTTTTGTATGGATTTG+GGG - chr6_1:13965413-13965432 Msa0876170:intron 30.0%
!!! AGTTTTGGGTTTGAGATTTA+TGG - chr6_1:13965548-13965567 Msa0876170:intron 30.0%
AGGAGTAAGTTTGTAATTTG+TGG - chr6_1:13965578-13965597 Msa0876170:intron 30.0%
!!! GTTTTTTGGTTTGTGAAATG+TGG - chr6_1:13965696-13965715 Msa0876170:intron 30.0%
AATATACAACATACAGCTCA+TGG + chr6_1:13965855-13965874 None:intergenic 30.0%
!!! TTTTTTAACTATTGTGGGTG+TGG - chr6_1:13965919-13965938 Msa0876170:CDS 30.0%
! TTTGATTCAAGTGTTGTGTT+CGG - chr6_1:13966218-13966237 Msa0876170:intron 30.0%
ATAGTGCATTATATCAAGTG+GGG + chr6_1:13966299-13966318 None:intergenic 30.0%
TTGATATGTGTTGAAACAAC+AGG + chr6_1:13966369-13966388 None:intergenic 30.0%
! GATACGACTTCGATTTTAAA+GGG + chr6_1:13966403-13966422 None:intergenic 30.0%
! AGATACGACTTCGATTTTAA+AGG + chr6_1:13966404-13966423 None:intergenic 30.0%
TCAACACCATTAACAAATTG+AGG + chr6_1:13966653-13966672 None:intergenic 30.0%
AAGTTAACAATAGTCTAGCT+AGG + chr6_1:13966717-13966736 None:intergenic 30.0%
TAACTTAAAATGGCTGTTGT+TGG - chr6_1:13966731-13966750 Msa0876170:intron 30.0%
!! AGTTTAACTTGTTAACAAGG+AGG - chr6_1:13966948-13966967 Msa0876170:intron 30.0%
! CAAAACTGTTGTGAACATTT+TGG + chr6_1:13967194-13967213 None:intergenic 30.0%
TAAATGTCAAATTCCTGATG+TGG + chr6_1:13967242-13967261 None:intergenic 30.0%
TTTCTTGCTTATAGACAATG+TGG - chr6_1:13967364-13967383 Msa0876170:intron 30.0%
TCAAATGCTAGAATAAGTGT+CGG + chr6_1:13967462-13967481 None:intergenic 30.0%
!!! TATTCTGTTTTCAGGTGATT+CGG - chr6_1:13967519-13967538 Msa0876170:intron 30.0%
CAAATAAAGAGTTGAGATCA+TGG - chr6_1:13967893-13967912 Msa0876170:five_prime_UTR 30.0%
! TAATTTTGTTGGAGACGACA+AGG + chr6_1:13964006-13964025 None:intergenic 35.0%
TTGTCGTCTCCAACAAAATT+AGG - chr6_1:13964005-13964024 Msa0876170:three_prime_UTR 35.0%
TGTCGTCTCCAACAAAATTA+GGG - chr6_1:13964006-13964025 Msa0876170:three_prime_UTR 35.0%
! ACAAGAAGCCCTAATTTTGT+TGG + chr6_1:13964017-13964036 None:intergenic 35.0%
GTCTGTTGTTAATAGACTCA+TGG + chr6_1:13964228-13964247 None:intergenic 35.0%
! AAGAGTGGGAAGTATACTTT+GGG - chr6_1:13964262-13964281 Msa0876170:three_prime_UTR 35.0%
AAACTGTTCTCAAATCTCTC+AGG - chr6_1:13964290-13964309 Msa0876170:three_prime_UTR 35.0%
AAATCTCTCAGGAACAACAA+AGG - chr6_1:13964301-13964320 Msa0876170:three_prime_UTR 35.0%
!!! TATAGTTTTGGATGGGTTTG+GGG - chr6_1:13964597-13964616 Msa0876170:intron 35.0%
! GAGAATGGATATATGGCTTT+TGG - chr6_1:13964619-13964638 Msa0876170:intron 35.0%
!! GGATATATGGCTTTTGGAAA+TGG - chr6_1:13964625-13964644 Msa0876170:intron 35.0%
!! GTGAATTTGAGTTTTGTGTC+GGG - chr6_1:13964665-13964684 Msa0876170:intron 35.0%
AAAAGTAAGCCAATCCAAAC+AGG - chr6_1:13964869-13964888 Msa0876170:intron 35.0%
! GCAATTTTCCTGCAACATTA+AGG + chr6_1:13964896-13964915 None:intergenic 35.0%
!! GCAGGAAAATTGCTTTTGTA+TGG - chr6_1:13964903-13964922 Msa0876170:intron 35.0%
CACACATAACAAAATACTCG+TGG + chr6_1:13965223-13965242 None:intergenic 35.0%
!! CACGAGTATTTTGTTATGTG+TGG - chr6_1:13965221-13965240 Msa0876170:intron 35.0%
TTGTTATGTGTGGAAGAGAT+TGG - chr6_1:13965231-13965250 Msa0876170:intron 35.0%
! TTGATTGACTTTGAGGAGAT+TGG - chr6_1:13965395-13965414 Msa0876170:intron 35.0%
!!! TTGAGGAGATTGGTTTTGTA+TGG - chr6_1:13965405-13965424 Msa0876170:intron 35.0%
! TAGCTTTTGTATGCTTCTGT+TGG - chr6_1:13965505-13965524 Msa0876170:intron 35.0%
! AGCTTTTGTATGCTTCTGTT+GGG - chr6_1:13965506-13965525 Msa0876170:intron 35.0%
!! GTAATTTGTGGTTTTCTCGA+TGG - chr6_1:13965590-13965609 Msa0876170:intron 35.0%
! GAGTATTTTGTTCTGTGTGT+TGG - chr6_1:13965626-13965645 Msa0876170:intron 35.0%
TGTTATGTTGCAACTGTTGT+AGG - chr6_1:13965728-13965747 Msa0876170:intron 35.0%
CATAGCATAGTACTCAATCT+CGG + chr6_1:13966032-13966051 None:intergenic 35.0%
GATTGAGTACTATGCTATGT+TGG - chr6_1:13966033-13966052 Msa0876170:intron 35.0%
GAATCAAAAGCTAGAGAATG+TGG + chr6_1:13966206-13966225 None:intergenic 35.0%
!! AACAGGCTATTTTACGTATG+AGG + chr6_1:13966352-13966371 None:intergenic 35.0%
TTTGAATGTGACCAATGCAT+CGG + chr6_1:13966466-13966485 None:intergenic 35.0%
AAAAGTTAACAAGTCTGGCT+AGG + chr6_1:13966564-13966583 None:intergenic 35.0%
CCTTCAAAAGTTAACAAGTC+TGG + chr6_1:13966569-13966588 None:intergenic 35.0%
!!! CCAGACTTGTTAACTTTTGA+AGG - chr6_1:13966566-13966585 Msa0876170:intron 35.0%
GAATGTAACCAATGTATCAG+TGG + chr6_1:13966617-13966636 None:intergenic 35.0%
ACTTGATGCAACAACTCTAT+TGG + chr6_1:13967570-13967589 None:intergenic 35.0%
TTCAAAAAGGACCAAAATCG+AGG + chr6_1:13967593-13967612 None:intergenic 35.0%
!!! GGTCCTTTTTGAAACAAAAC+TGG - chr6_1:13967600-13967619 Msa0876170:intron 35.0%
!!! CAGCCAGTTTTGTTTCAAAA+AGG + chr6_1:13967606-13967625 None:intergenic 35.0%
TCGAAATTTATGTGGACTTC+CGG - chr6_1:13967651-13967670 Msa0876170:CDS 35.0%
CTCGAATATCCAAATACTTC+CGG + chr6_1:13967673-13967692 None:intergenic 35.0%
GAAGTTAGGGTATGCGAATA+GGG + chr6_1:13964061-13964080 None:intergenic 40.0%
TGAAGTTAGGGTATGCGAAT+AGG + chr6_1:13964062-13964081 None:intergenic 40.0%
TGCAACCATGGTTGAAGTTA+GGG + chr6_1:13964074-13964093 None:intergenic 40.0%
AGAGAGAGAGAGAGAGATTA+CGG + chr6_1:13964107-13964126 None:intergenic 40.0%
! GAAGAGTGGGAAGTATACTT+TGG - chr6_1:13964261-13964280 Msa0876170:three_prime_UTR 40.0%
! AGAGTGGGAAGTATACTTTG+GGG - chr6_1:13964263-13964282 Msa0876170:three_prime_UTR 40.0%
TGAATAGATGGGAGGAAATG+AGG - chr6_1:13964570-13964589 Msa0876170:intron 40.0%
GTTTGGGGAGAATGGATATA+TGG - chr6_1:13964612-13964631 Msa0876170:intron 40.0%
GAGTATTCTGTTCTGTATGC+TGG - chr6_1:13965036-13965055 Msa0876170:intron 40.0%
ATAGGCTTCCCAACATTCAT+TGG - chr6_1:13965082-13965101 Msa0876170:intron 40.0%
GTCTCTTTGATTGGGAAATG+TGG - chr6_1:13965194-13965213 Msa0876170:intron 40.0%
! GTGGTTTTCTCGATGGATAT+TGG - chr6_1:13965597-13965616 Msa0876170:intron 40.0%
!!! CGGGAAGAGTGAATGTTTTT+TGG - chr6_1:13965682-13965701 Msa0876170:intron 40.0%
GTTGGAGTTCATCACTACAA+CGG - chr6_1:13966061-13966080 Msa0876170:intron 40.0%
TTGGAGTTCATCACTACAAC+GGG - chr6_1:13966062-13966081 Msa0876170:intron 40.0%
ATTGTAGGACTGACAGTCTT+TGG - chr6_1:13966245-13966264 Msa0876170:intron 40.0%
ATCGAAGTCGTATCTAGTGT+CGG - chr6_1:13966409-13966428 Msa0876170:intron 40.0%
TGTTGATGTGTTGTCTTGTC+CGG - chr6_1:13966513-13966532 Msa0876170:intron 40.0%
! TATCAGTGGTGTGTCAGTTT+TGG + chr6_1:13966603-13966622 None:intergenic 40.0%
AGTCTAGCTAGGTTGTACAA+AGG + chr6_1:13966706-13966725 None:intergenic 40.0%
!! TGCTGCTGCTAAATTTTGAC+TGG - chr6_1:13966822-13966841 Msa0876170:intron 40.0%
! AGTGTGTCGTTGTAATGAAG+AGG + chr6_1:13967088-13967107 None:intergenic 40.0%
CTTATAGACAATGTGGACCT+CGG - chr6_1:13967371-13967390 Msa0876170:intron 40.0%
GTGTCGGATAATATGTTACC+AGG + chr6_1:13967446-13967465 None:intergenic 40.0%
! TTGCATCAAGTCCTCGATTT+TGG - chr6_1:13967579-13967598 Msa0876170:intron 40.0%
CATGAAGAAGTTAGTTGTCG+AGG + chr6_1:13967849-13967868 None:intergenic 40.0%
GCATACCCTAACTTCAACCA+TGG - chr6_1:13964066-13964085 Msa0876170:three_prime_UTR 45.0%
CTGCAACCATGGTTGAAGTT+AGG + chr6_1:13964075-13964094 None:intergenic 45.0%
! GGTTTTCTTTGCTGCAACCA+TGG + chr6_1:13964086-13964105 None:intergenic 45.0%
TCGCTCTTGTGATGAAGAGT+GGG - chr6_1:13964248-13964267 Msa0876170:three_prime_UTR 45.0%
CATTAAGGGCCTGTTTGGAT+TGG + chr6_1:13964881-13964900 None:intergenic 45.0%
TGCAACATTAAGGGCCTGTT+TGG + chr6_1:13964886-13964905 None:intergenic 45.0%
AAACAGGCCCTTAATGTTGC+AGG - chr6_1:13964885-13964904 Msa0876170:intron 45.0%
CTAACAATTGCCCACCATTG+AGG - chr6_1:13966002-13966021 Msa0876170:intron 45.0%
TCAATCTCGGACTTCCTCAA+TGG + chr6_1:13966019-13966038 None:intergenic 45.0%
GTACTATGCTATGTTGGCGA+AGG - chr6_1:13966039-13966058 Msa0876170:intron 45.0%
TATGCTATGTTGGCGAAGGT+TGG - chr6_1:13966043-13966062 Msa0876170:intron 45.0%
! GAATGTGGCTTGCAAGTTCA+AGG + chr6_1:13966191-13966210 None:intergenic 45.0%
GTTGTGTTCGGTCTCATTGT+AGG - chr6_1:13966230-13966249 Msa0876170:intron 45.0%
ATAGGCACTAGCACAGATAC+CGG + chr6_1:13966535-13966554 None:intergenic 45.0%
CTGACACACCACTGATACAT+TGG - chr6_1:13966606-13966625 Msa0876170:intron 45.0%
GTTGATGTGTTTGTCGTGTC+CGG - chr6_1:13966668-13966687 Msa0876170:intron 45.0%
TTGATCAGTTGAGCCACATC+AGG - chr6_1:13967226-13967245 Msa0876170:intron 45.0%
TGTCTCAGCATTGTTGATCC+TGG - chr6_1:13967425-13967444 Msa0876170:intron 45.0%
GACATCATCAAGACCATACC+TGG - chr6_1:13967541-13967560 Msa0876170:intron 45.0%
! ACTCTATTGGTCTCCAGGTA+TGG + chr6_1:13967557-13967576 None:intergenic 45.0%
! CAACAACTCTATTGGTCTCC+AGG + chr6_1:13967562-13967581 None:intergenic 45.0%
!! TGTGGACTTCCGGAAGTATT+TGG - chr6_1:13967661-13967680 Msa0876170:CDS 45.0%
AATATACCGATGCTGACAGG+CGG + chr6_1:13967929-13967948 None:intergenic 45.0%
GGTAATATACCGATGCTGAC+AGG + chr6_1:13967932-13967951 None:intergenic 45.0%
CTCGCTCTTGTGATGAAGAG+TGG - chr6_1:13964247-13964266 Msa0876170:three_prime_UTR 50.0%
! TTGGATGGGTTTGGGGAGAA+TGG - chr6_1:13964604-13964623 Msa0876170:intron 50.0%
!! AGTTTTGTGTCGGGCTCGTT+TGG - chr6_1:13964674-13964693 Msa0876170:intron 50.0%
TCTCGGACTTCCTCAATGGT+GGG + chr6_1:13966015-13966034 None:intergenic 50.0%
ATCTCGGACTTCCTCAATGG+TGG + chr6_1:13966016-13966035 None:intergenic 50.0%
!! CATCGGTGTTGTGTCGGTAT+TGG + chr6_1:13966449-13966468 None:intergenic 50.0%
!! CCAATGCATCGGTGTTGTGT+CGG + chr6_1:13966455-13966474 None:intergenic 50.0%
AGTCTGGCTAGGCTATGCAT+AGG + chr6_1:13966553-13966572 None:intergenic 50.0%
! ACAAAGGCTCTAGCAGACAC+CGG + chr6_1:13966690-13966709 None:intergenic 50.0%
GAGGAGAGAATGCTAGCTAG+AGG + chr6_1:13967069-13967088 None:intergenic 50.0%
AATATCCCGCCTGTCAGCAT+CGG - chr6_1:13967920-13967939 Msa0876170:five_prime_UTR 50.0%
ATATACCGATGCTGACAGGC+GGG + chr6_1:13967928-13967947 None:intergenic 50.0%
CCGACACAACACCGATGCAT+TGG - chr6_1:13966452-13966471 Msa0876170:intron 55.0%
! ATTTTCCGCAAGCAGTGCCG+AGG + chr6_1:13967391-13967410 None:intergenic 55.0%
GTGGACCTCGGCACTGCTTG+CGG - chr6_1:13967383-13967402 Msa0876170:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 13963994 13967957 13963994 ID=Msa0876170;Name=Msa0876170
chr6_1 mRNA 13963994 13967957 13963994 ID=Msa0876170-mRNA-1;Parent=Msa0876170;Name=Msa0876170-mRNA-1;_AED=0.03;_eAED=0.03;_QI=91|1|1|1|1|1|5|384|112
chr6_1 exon 13963994 13964418 13963994 ID=Msa0876170-mRNA-1:exon:4023;Parent=Msa0876170-mRNA-1
chr6_1 exon 13964505 13964573 13964505 ID=Msa0876170-mRNA-1:exon:4022;Parent=Msa0876170-mRNA-1
chr6_1 exon 13965866 13965967 13965866 ID=Msa0876170-mRNA-1:exon:4021;Parent=Msa0876170-mRNA-1
chr6_1 exon 13967629 13967734 13967629 ID=Msa0876170-mRNA-1:exon:4020;Parent=Msa0876170-mRNA-1
chr6_1 exon 13967846 13967957 13967846 ID=Msa0876170-mRNA-1:exon:4019;Parent=Msa0876170-mRNA-1
chr6_1 five_prime_UTR 13967867 13967957 13967867 ID=Msa0876170-mRNA-1:five_prime_utr;Parent=Msa0876170-mRNA-1
chr6_1 CDS 13967846 13967866 13967846 ID=Msa0876170-mRNA-1:cds;Parent=Msa0876170-mRNA-1
chr6_1 CDS 13967629 13967734 13967629 ID=Msa0876170-mRNA-1:cds;Parent=Msa0876170-mRNA-1
chr6_1 CDS 13965866 13965967 13965866 ID=Msa0876170-mRNA-1:cds;Parent=Msa0876170-mRNA-1
chr6_1 CDS 13964505 13964573 13964505 ID=Msa0876170-mRNA-1:cds;Parent=Msa0876170-mRNA-1
chr6_1 CDS 13964378 13964418 13964378 ID=Msa0876170-mRNA-1:cds;Parent=Msa0876170-mRNA-1
chr6_1 three_prime_UTR 13963994 13964377 13963994 ID=Msa0876170-mRNA-1:three_prime_utr;Parent=Msa0876170-mRNA-1
Gene Sequence

>Msa0876170

ATGGTTGCAGCAAAGAAAACCAAGAAGACCCATGAGTCTATTAACAACAGACTCGCTCTTGTGATGAAGAGTGGGAAGTATACTTTGGGGTACAAAACTGTTCTCAAATCTCTCAGGAACAACAAAGGGAAATTGATTATCATTGCTAACAATTGCCCACCATTGAGGAAGTCCGAGATTGAGTACTATGCTATGTTGGCGAAGGTTGGAGTTCATCACTACAACGGGAACAATGTGGACCTCGGCACTGCTTGCGGAAAATACTACAGAGTGTGTTGTCTCAGCATTGTTGATCCTGGTGATTCGGACATCATCAAGACCATACCTGGAGACCAATAG

Protein sequence

>Msa0876170

MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRNNKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTIPGDQ*