AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0540480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540480 MtrunA17_Chr4g0018141 100.000 122 0 0 1 122 1 122 3.61e-88 251
Msa0540480 MtrunA17_Chr7g0258291 98.361 122 2 0 1 122 1 122 5.61e-87 248
Msa0540480 MtrunA17_Chr2g0317541 97.500 120 3 0 3 122 4 123 4.91e-84 241
Msa0540480 MtrunA17_Chr1g0197931 97.500 120 3 0 3 122 4 123 4.91e-84 241
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540480 AT3G47370.3 88.525 122 14 0 1 122 1 122 3.03e-76 221
Msa0540480 AT3G47370.2 88.525 122 14 0 1 122 1 122 3.03e-76 221
Msa0540480 AT3G47370.1 88.525 122 14 0 1 122 1 122 3.03e-76 221
Msa0540480 AT5G62300.1 88.430 121 14 0 2 122 4 124 2.87e-75 219
Msa0540480 AT5G62300.2 88.430 121 14 0 2 122 4 124 2.87e-75 219
Msa0540480 AT3G45030.1 88.430 121 14 0 2 122 4 124 2.87e-75 219

Find 48 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACTTGCTAAACAAGTTT+AGG 0.258987 4_1:-22703566 None:intergenic
GTGCTAAGGATAAGCATCTT+AGG 0.267467 4_1:+22701693 Msa0540480:CDS
TTTCTTCTTCTCTGCTGCTT+GGG 0.317153 4_1:-22701343 None:intergenic
ATGCCATCTTAAGATTTCTA+AGG 0.331724 4_1:-22703522 None:intergenic
AGAGAGTGATCCTAATCTTA+TGG 0.362238 4_1:-22701526 None:intergenic
GAAATGCTTTCACGGCGATT+TGG 0.387783 4_1:-22701312 None:intergenic
GCTTAAAATACTTGATATGA+AGG 0.427942 4_1:-22703467 None:intergenic
GCCTGGTTTGGAAGAATCTC+AGG 0.435840 4_1:+22701496 Msa0540480:CDS
GAAACCCACTAAGCCTGGTT+TGG 0.441208 4_1:+22701484 Msa0540480:CDS
TTATTTGTAATTTAACCTCC+TGG 0.446505 4_1:+22703323 Msa0540480:three_prime_UTR
TTCTTCCAAACCAGGCTTAG+TGG 0.453985 4_1:-22701489 None:intergenic
AGGAACAGATCCATAAGATT+AGG 0.460004 4_1:+22701516 Msa0540480:CDS
TTCTTCTTCTCTGCTGCTTG+GGG 0.470037 4_1:-22701342 None:intergenic
GTAATCTGCTTGACAACATC+AGG 0.478418 4_1:-22703210 None:intergenic
ACATGTTCAGAATCTCGAAA+AGG 0.489111 4_1:+22701556 Msa0540480:CDS
TCCTGAGATTCTTCCAAACC+AGG 0.490218 4_1:-22701497 None:intergenic
GGTAACCTCAACTTCGACAC+CGG 0.491925 4_1:-22703250 None:intergenic
ATTCCTTAGAAATCTTAAGA+TGG 0.496501 4_1:+22703519 Msa0540480:three_prime_UTR
AGGAAAACCCCTTGTGGAGA+AGG 0.505939 4_1:+22701764 Msa0540480:CDS
CATGTTCAGAATCTCGAAAA+GGG 0.517875 4_1:+22701557 Msa0540480:CDS
GATATGATGAAATGCTTTCA+CGG 0.519152 4_1:-22701320 None:intergenic
GCAATGAAACCCACTAAGCC+TGG 0.522658 4_1:+22701479 Msa0540480:CDS
ACAGCAACACATTTCTAGCC+AGG 0.525060 4_1:-22703341 None:intergenic
TGCTAAGGATAAGCATCTTA+GGG 0.525206 4_1:+22701694 Msa0540480:CDS
TCTTCCAAACCAGGCTTAGT+GGG 0.526450 4_1:-22701488 None:intergenic
TATGGTAGTTTGTAGTGACT+TGG 0.528686 4_1:+22701664 Msa0540480:intron
TGACTTGGTTCGTGGTGCTA+AGG 0.539891 4_1:+22701679 Msa0540480:CDS
GGATAAGCATCTTAGGGTGA+AGG 0.543022 4_1:+22701700 Msa0540480:CDS
ACTTTAGCAAACATTTCTCA+TGG 0.549132 4_1:-22703433 None:intergenic
GTTTGTAGTGACTTGGTTCG+TGG 0.553261 4_1:+22701671 Msa0540480:intron
TGAACCCGGTGTCGAAGTTG+AGG 0.555520 4_1:+22703245 Msa0540480:CDS
TGATAATCAAGCATCTGCAA+TGG 0.568022 4_1:-22703271 None:intergenic
TTTCTAAGGAATATAAATTG+TGG 0.580424 4_1:-22703508 None:intergenic
GATAAGCATCTTAGGGTGAA+GGG 0.583411 4_1:+22701701 Msa0540480:CDS
CAACATCAGGTGAACTGTAG+AGG 0.586753 4_1:-22703197 None:intergenic
GTAACCTCAACTTCGACACC+GGG 0.590799 4_1:-22703249 None:intergenic
CAGAGAAGAAGAAAATCTCA+AGG 0.590901 4_1:+22701352 Msa0540480:five_prime_UTR
AAATTTACCTTCTCCACAAG+GGG 0.593604 4_1:-22701771 None:intergenic
ATGGTTAAGGTACAAACACA+TGG 0.600096 4_1:+22703136 Msa0540480:intron
AAAATTTACCTTCTCCACAA+GGG 0.606511 4_1:-22701772 None:intergenic
TAAAATTTACCTTCTCCACA+AGG 0.607362 4_1:-22701773 None:intergenic
AAGTGCTTCACATTACCACT+AGG 0.639472 4_1:+22701744 Msa0540480:CDS
ACCACTAGGAAAACCCCTTG+TGG 0.655241 4_1:+22701758 Msa0540480:CDS
TTAGCAAACATTTCTCATGG+TGG 0.655681 4_1:-22703430 None:intergenic
ACATCGATCACAATTGAACC+CGG 0.686873 4_1:+22703231 Msa0540480:CDS
GCAACACATTTCTAGCCAGG+AGG 0.694059 4_1:-22703338 None:intergenic
TGGTTAAGGTACAAACACAT+GGG 0.706931 4_1:+22703137 Msa0540480:intron
TTAGGGTGAAGGGACCAGTG+AGG 0.764206 4_1:+22701711 Msa0540480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGTTTTACTATATAAATT+AGG + chr4_1:22703586-22703605 Msa0540480:three_prime_UTR 10.0%
!!! AAGTTTTACTATATAAATTA+GGG + chr4_1:22703587-22703606 Msa0540480:three_prime_UTR 10.0%
!!! AAAGTTTTACTATATAAATT+AGG + chr4_1:22703586-22703605 Msa0540480:three_prime_UTR 10.0%
!!! AAGTTTTACTATATAAATTA+GGG + chr4_1:22703587-22703606 Msa0540480:three_prime_UTR 10.0%
!!! TATAAGCTTTTTTTATTTGA+TGG + chr4_1:22701604-22701623 Msa0540480:intron 15.0%
!!! TTTTTTGTTTTGTTTTGTTA+TGG + chr4_1:22701646-22701665 Msa0540480:intron 15.0%
!!! AAGGTAAATTTTATTTGATT+TGG + chr4_1:22701783-22701802 Msa0540480:intron 15.0%
!!! ATATTATTGTTTCATTTTGA+AGG + chr4_1:22702930-22702949 Msa0540480:intron 15.0%
!!! AAAATTTTGAAGTCTAATTA+TGG + chr4_1:22703366-22703385 Msa0540480:three_prime_UTR 15.0%
!!! TATAAGCTTTTTTTATTTGA+TGG + chr4_1:22701604-22701623 Msa0540480:intron 15.0%
!!! TTTTTTGTTTTGTTTTGTTA+TGG + chr4_1:22701646-22701665 Msa0540480:intron 15.0%
!!! AAGGTAAATTTTATTTGATT+TGG + chr4_1:22701783-22701802 Msa0540480:intron 15.0%
!!! ATATTATTGTTTCATTTTGA+AGG + chr4_1:22702930-22702949 Msa0540480:intron 15.0%
!!! AAAATTTTGAAGTCTAATTA+TGG + chr4_1:22703366-22703385 Msa0540480:three_prime_UTR 15.0%
!!! AGATTTTAAGTTTGGTAATT+TGG + chr4_1:22702090-22702109 Msa0540480:intron 20.0%
!!! CTCGATTATCTTTTATTTTA+TGG + chr4_1:22703400-22703419 Msa0540480:three_prime_UTR 20.0%
!!! TTTCTAAGGAATATAAATTG+TGG - chr4_1:22703511-22703530 None:intergenic 20.0%
!!! AGATTTTAAGTTTGGTAATT+TGG + chr4_1:22702090-22702109 Msa0540480:intron 20.0%
!!! CTCGATTATCTTTTATTTTA+TGG + chr4_1:22703400-22703419 Msa0540480:three_prime_UTR 20.0%
!!! TTTCTAAGGAATATAAATTG+TGG - chr4_1:22703511-22703530 None:intergenic 20.0%
! CATTTACGTAATCAACAAAT+TGG - chr4_1:22702168-22702187 None:intergenic 25.0%
! GATTAATTGACATGTATCAT+TGG + chr4_1:22702255-22702274 Msa0540480:intron 25.0%
!!! TTTTTAAACTGTTAGTTTGC+TGG + chr4_1:22702292-22702311 Msa0540480:intron 25.0%
! TAATATATCGTTTGATGTCT+TGG + chr4_1:22702598-22702617 Msa0540480:intron 25.0%
!! TTTAATGAAGCTAAAAGCAT+AGG + chr4_1:22702805-22702824 Msa0540480:intron 25.0%
! TCTTTCAAACACTTATACAT+AGG + chr4_1:22702847-22702866 Msa0540480:intron 25.0%
!! TTTAGAATACTCTTATGTCA+TGG - chr4_1:22702876-22702895 None:intergenic 25.0%
! TCATGTCATAAAAATAGAAG+CGG - chr4_1:22703055-22703074 None:intergenic 25.0%
! TTATTTGTAATTTAACCTCC+TGG + chr4_1:22703323-22703342 Msa0540480:three_prime_UTR 25.0%
!!! TTTTGAAGTCTAATTATGGT+AGG + chr4_1:22703370-22703389 Msa0540480:three_prime_UTR 25.0%
! GCTTAAAATACTTGATATGA+AGG - chr4_1:22703470-22703489 None:intergenic 25.0%
! ATTCCTTAGAAATCTTAAGA+TGG + chr4_1:22703519-22703538 Msa0540480:three_prime_UTR 25.0%
!! TTTACTTGCTAAACAAGTTT+AGG - chr4_1:22703569-22703588 None:intergenic 25.0%
! CATTTACGTAATCAACAAAT+TGG - chr4_1:22702168-22702187 None:intergenic 25.0%
! GATTAATTGACATGTATCAT+TGG + chr4_1:22702255-22702274 Msa0540480:intron 25.0%
!!! TTTTTAAACTGTTAGTTTGC+TGG + chr4_1:22702292-22702311 Msa0540480:intron 25.0%
! TAATATATCGTTTGATGTCT+TGG + chr4_1:22702598-22702617 Msa0540480:intron 25.0%
!! TTTAATGAAGCTAAAAGCAT+AGG + chr4_1:22702805-22702824 Msa0540480:intron 25.0%
! TCTTTCAAACACTTATACAT+AGG + chr4_1:22702847-22702866 Msa0540480:intron 25.0%
!! TTTAGAATACTCTTATGTCA+TGG - chr4_1:22702876-22702895 None:intergenic 25.0%
! TCATGTCATAAAAATAGAAG+CGG - chr4_1:22703055-22703074 None:intergenic 25.0%
! TTATTTGTAATTTAACCTCC+TGG + chr4_1:22703323-22703342 Msa0540480:three_prime_UTR 25.0%
!!! TTTTGAAGTCTAATTATGGT+AGG + chr4_1:22703370-22703389 Msa0540480:three_prime_UTR 25.0%
! GCTTAAAATACTTGATATGA+AGG - chr4_1:22703470-22703489 None:intergenic 25.0%
! ATTCCTTAGAAATCTTAAGA+TGG + chr4_1:22703519-22703538 Msa0540480:three_prime_UTR 25.0%
!! TTTACTTGCTAAACAAGTTT+AGG - chr4_1:22703569-22703588 None:intergenic 25.0%
GATATGATGAAATGCTTTCA+CGG - chr4_1:22701323-22701342 None:intergenic 30.0%
!! TCAATCAGTGTTTGATTTTC+AGG + chr4_1:22701430-22701449 Msa0540480:intron 30.0%
!! CAATCAGTGTTTGATTTTCA+GGG + chr4_1:22701431-22701450 Msa0540480:intron 30.0%
!! AATCAGTGTTTGATTTTCAG+GGG + chr4_1:22701432-22701451 Msa0540480:intron 30.0%
AAAATTTACCTTCTCCACAA+GGG - chr4_1:22701775-22701794 None:intergenic 30.0%
TAAAATTTACCTTCTCCACA+AGG - chr4_1:22701776-22701795 None:intergenic 30.0%
ATCATTGCGACAAATGAAAT+CGG - chr4_1:22701936-22701955 None:intergenic 30.0%
GAATTATGTTACGATCATAG+TGG + chr4_1:22702027-22702046 Msa0540480:intron 30.0%
!!! GTCAGTCTAGATTTTAAGTT+TGG + chr4_1:22702082-22702101 Msa0540480:intron 30.0%
ATGGCTACATGTTTCAAATT+GGG + chr4_1:22702334-22702353 Msa0540480:intron 30.0%
CAGGTGATTATATTCAATTG+TGG - chr4_1:22702487-22702506 None:intergenic 30.0%
! TTTTAGTGTCATGTTAGAGT+CGG + chr4_1:22702507-22702526 Msa0540480:intron 30.0%
!!! AGCACTTTTGAAACAAGAAT+TGG - chr4_1:22702659-22702678 None:intergenic 30.0%
! TGCTCTCTAAAAGTAGAATT+TGG + chr4_1:22702722-22702741 Msa0540480:intron 30.0%
! GCTCTCTAAAAGTAGAATTT+GGG + chr4_1:22702723-22702742 Msa0540480:intron 30.0%
TAAAAGTAGAATTTGGGAAG+AGG + chr4_1:22702729-22702748 Msa0540480:intron 30.0%
AAAAGTAGAATTTGGGAAGA+GGG + chr4_1:22702730-22702749 Msa0540480:intron 30.0%
ATAATATCTGCACCTAGAAA+GGG - chr4_1:22702917-22702936 None:intergenic 30.0%
AATAATATCTGCACCTAGAA+AGG - chr4_1:22702918-22702937 None:intergenic 30.0%
CATGTCATAAAAATAGAAGC+GGG - chr4_1:22703054-22703073 None:intergenic 30.0%
ACTTTAGCAAACATTTCTCA+TGG - chr4_1:22703436-22703455 None:intergenic 30.0%
! TTTAAGCTTTTGTCGAACAA+TGG + chr4_1:22703483-22703502 Msa0540480:three_prime_UTR 30.0%
ATGCCATCTTAAGATTTCTA+AGG - chr4_1:22703525-22703544 None:intergenic 30.0%
GATATGATGAAATGCTTTCA+CGG - chr4_1:22701323-22701342 None:intergenic 30.0%
!! TCAATCAGTGTTTGATTTTC+AGG + chr4_1:22701430-22701449 Msa0540480:intron 30.0%
!! CAATCAGTGTTTGATTTTCA+GGG + chr4_1:22701431-22701450 Msa0540480:intron 30.0%
!! AATCAGTGTTTGATTTTCAG+GGG + chr4_1:22701432-22701451 Msa0540480:intron 30.0%
AAAATTTACCTTCTCCACAA+GGG - chr4_1:22701775-22701794 None:intergenic 30.0%
TAAAATTTACCTTCTCCACA+AGG - chr4_1:22701776-22701795 None:intergenic 30.0%
ATCATTGCGACAAATGAAAT+CGG - chr4_1:22701936-22701955 None:intergenic 30.0%
GAATTATGTTACGATCATAG+TGG + chr4_1:22702027-22702046 Msa0540480:intron 30.0%
!!! GTCAGTCTAGATTTTAAGTT+TGG + chr4_1:22702082-22702101 Msa0540480:intron 30.0%
ATGGCTACATGTTTCAAATT+GGG + chr4_1:22702334-22702353 Msa0540480:intron 30.0%
CAGGTGATTATATTCAATTG+TGG - chr4_1:22702487-22702506 None:intergenic 30.0%
! TTTTAGTGTCATGTTAGAGT+CGG + chr4_1:22702507-22702526 Msa0540480:intron 30.0%
!!! AGCACTTTTGAAACAAGAAT+TGG - chr4_1:22702659-22702678 None:intergenic 30.0%
! TGCTCTCTAAAAGTAGAATT+TGG + chr4_1:22702722-22702741 Msa0540480:intron 30.0%
! GCTCTCTAAAAGTAGAATTT+GGG + chr4_1:22702723-22702742 Msa0540480:intron 30.0%
TAAAAGTAGAATTTGGGAAG+AGG + chr4_1:22702729-22702748 Msa0540480:intron 30.0%
AAAAGTAGAATTTGGGAAGA+GGG + chr4_1:22702730-22702749 Msa0540480:intron 30.0%
ATAATATCTGCACCTAGAAA+GGG - chr4_1:22702917-22702936 None:intergenic 30.0%
AATAATATCTGCACCTAGAA+AGG - chr4_1:22702918-22702937 None:intergenic 30.0%
CATGTCATAAAAATAGAAGC+GGG - chr4_1:22703054-22703073 None:intergenic 30.0%
ACTTTAGCAAACATTTCTCA+TGG - chr4_1:22703436-22703455 None:intergenic 30.0%
! TTTAAGCTTTTGTCGAACAA+TGG + chr4_1:22703483-22703502 Msa0540480:three_prime_UTR 30.0%
ATGCCATCTTAAGATTTCTA+AGG - chr4_1:22703525-22703544 None:intergenic 30.0%
!! TTGGTTTTTGTGGGATTTTC+TGG - chr4_1:22701296-22701315 None:intergenic 35.0%
CAGAGAAGAAGAAAATCTCA+AGG + chr4_1:22701352-22701371 Msa0540480:five_prime_UTR 35.0%
! ATCTGGAATGATGAGAAAGT+AGG - chr4_1:22701382-22701401 None:intergenic 35.0%
CGAAACAATCTCAAAGAATC+TGG - chr4_1:22701399-22701418 None:intergenic 35.0%
TCAGGGGAAGGAAAAAAAAA+TGG + chr4_1:22701448-22701467 Msa0540480:intron 35.0%
AGGAACAGATCCATAAGATT+AGG + chr4_1:22701516-22701535 Msa0540480:CDS 35.0%
AGAGAGTGATCCTAATCTTA+TGG - chr4_1:22701529-22701548 None:intergenic 35.0%
ACATGTTCAGAATCTCGAAA+AGG + chr4_1:22701556-22701575 Msa0540480:CDS 35.0%
CATGTTCAGAATCTCGAAAA+GGG + chr4_1:22701557-22701576 Msa0540480:CDS 35.0%
! TATGGTAGTTTGTAGTGACT+TGG + chr4_1:22701664-22701683 Msa0540480:intron 35.0%
TGCTAAGGATAAGCATCTTA+GGG + chr4_1:22701694-22701713 Msa0540480:CDS 35.0%
!! GTAATGTGAAGCACTTTTGT+AGG - chr4_1:22701740-22701759 None:intergenic 35.0%
AAATTTACCTTCTCCACAAG+GGG - chr4_1:22701774-22701793 None:intergenic 35.0%
!!! TCTTTGTGCATTTTGATTGC+TGG + chr4_1:22701813-22701832 Msa0540480:intron 35.0%
ACTTTCCAATCTGAATCCAA+CGG + chr4_1:22702139-22702158 Msa0540480:intron 35.0%
AAACATGTAGCCATCTAAGA+TGG - chr4_1:22702328-22702347 None:intergenic 35.0%
GATGGCTACATGTTTCAAAT+TGG + chr4_1:22702333-22702352 Msa0540480:intron 35.0%
!! GTGGTTCTAGAGATGTATTA+TGG + chr4_1:22702397-22702416 Msa0540480:intron 35.0%
CTCTAACATGACACTAAAAC+AGG - chr4_1:22702506-22702525 None:intergenic 35.0%
TACATTGAAATTGCGTGGAT+TGG + chr4_1:22702570-22702589 Msa0540480:intron 35.0%
!! TAGAAAGGGAGTGTTTCAAA+TGG - chr4_1:22702903-22702922 None:intergenic 35.0%
! ATTTGAAACACTCCCTTTCT+AGG + chr4_1:22702902-22702921 Msa0540480:intron 35.0%
AAAAATAGAAGCGGGCATTT+GGG - chr4_1:22703046-22703065 None:intergenic 35.0%
TAAAAATAGAAGCGGGCATT+TGG - chr4_1:22703047-22703066 None:intergenic 35.0%
TGAAACAGATTGTCAACTCA+AGG - chr4_1:22703117-22703136 None:intergenic 35.0%
! TGAGTTGACAATCTGTTTCA+TGG + chr4_1:22703117-22703136 Msa0540480:intron 35.0%
GACAATCTGTTTCATGGTTA+AGG + chr4_1:22703123-22703142 Msa0540480:intron 35.0%
ATGGTTAAGGTACAAACACA+TGG + chr4_1:22703136-22703155 Msa0540480:intron 35.0%
TGGTTAAGGTACAAACACAT+GGG + chr4_1:22703137-22703156 Msa0540480:intron 35.0%
TGATAATCAAGCATCTGCAA+TGG - chr4_1:22703274-22703293 None:intergenic 35.0%
TTAGCAAACATTTCTCATGG+TGG - chr4_1:22703433-22703452 None:intergenic 35.0%
!!! TTGTGGGATTTTCTGGTTTA+TGG - chr4_1:22701289-22701308 None:intergenic 35.0%
!! TTGGTTTTTGTGGGATTTTC+TGG - chr4_1:22701296-22701315 None:intergenic 35.0%
CAGAGAAGAAGAAAATCTCA+AGG + chr4_1:22701352-22701371 Msa0540480:five_prime_UTR 35.0%
! ATCTGGAATGATGAGAAAGT+AGG - chr4_1:22701382-22701401 None:intergenic 35.0%
CGAAACAATCTCAAAGAATC+TGG - chr4_1:22701399-22701418 None:intergenic 35.0%
TCAGGGGAAGGAAAAAAAAA+TGG + chr4_1:22701448-22701467 Msa0540480:intron 35.0%
AGGAACAGATCCATAAGATT+AGG + chr4_1:22701516-22701535 Msa0540480:CDS 35.0%
AGAGAGTGATCCTAATCTTA+TGG - chr4_1:22701529-22701548 None:intergenic 35.0%
ACATGTTCAGAATCTCGAAA+AGG + chr4_1:22701556-22701575 Msa0540480:CDS 35.0%
CATGTTCAGAATCTCGAAAA+GGG + chr4_1:22701557-22701576 Msa0540480:CDS 35.0%
! TATGGTAGTTTGTAGTGACT+TGG + chr4_1:22701664-22701683 Msa0540480:intron 35.0%
TGCTAAGGATAAGCATCTTA+GGG + chr4_1:22701694-22701713 Msa0540480:CDS 35.0%
!! GTAATGTGAAGCACTTTTGT+AGG - chr4_1:22701740-22701759 None:intergenic 35.0%
AAATTTACCTTCTCCACAAG+GGG - chr4_1:22701774-22701793 None:intergenic 35.0%
!!! TCTTTGTGCATTTTGATTGC+TGG + chr4_1:22701813-22701832 Msa0540480:intron 35.0%
ACTTTCCAATCTGAATCCAA+CGG + chr4_1:22702139-22702158 Msa0540480:intron 35.0%
AAACATGTAGCCATCTAAGA+TGG - chr4_1:22702328-22702347 None:intergenic 35.0%
GATGGCTACATGTTTCAAAT+TGG + chr4_1:22702333-22702352 Msa0540480:intron 35.0%
!! GTGGTTCTAGAGATGTATTA+TGG + chr4_1:22702397-22702416 Msa0540480:intron 35.0%
CTCTAACATGACACTAAAAC+AGG - chr4_1:22702506-22702525 None:intergenic 35.0%
TACATTGAAATTGCGTGGAT+TGG + chr4_1:22702570-22702589 Msa0540480:intron 35.0%
!! TAGAAAGGGAGTGTTTCAAA+TGG - chr4_1:22702903-22702922 None:intergenic 35.0%
! ATTTGAAACACTCCCTTTCT+AGG + chr4_1:22702902-22702921 Msa0540480:intron 35.0%
AAAAATAGAAGCGGGCATTT+GGG - chr4_1:22703046-22703065 None:intergenic 35.0%
TAAAAATAGAAGCGGGCATT+TGG - chr4_1:22703047-22703066 None:intergenic 35.0%
TGAAACAGATTGTCAACTCA+AGG - chr4_1:22703117-22703136 None:intergenic 35.0%
! TGAGTTGACAATCTGTTTCA+TGG + chr4_1:22703117-22703136 Msa0540480:intron 35.0%
GACAATCTGTTTCATGGTTA+AGG + chr4_1:22703123-22703142 Msa0540480:intron 35.0%
ATGGTTAAGGTACAAACACA+TGG + chr4_1:22703136-22703155 Msa0540480:intron 35.0%
TGGTTAAGGTACAAACACAT+GGG + chr4_1:22703137-22703156 Msa0540480:intron 35.0%
TGATAATCAAGCATCTGCAA+TGG - chr4_1:22703274-22703293 None:intergenic 35.0%
TTAGCAAACATTTCTCATGG+TGG - chr4_1:22703433-22703452 None:intergenic 35.0%
! TTTCTTCTTCTCTGCTGCTT+GGG - chr4_1:22701346-22701365 None:intergenic 40.0%
! TTTTCTTCTTCTCTGCTGCT+TGG - chr4_1:22701347-22701366 None:intergenic 40.0%
!! AGTGTTTGATTTTCAGGGGA+AGG + chr4_1:22701436-22701455 Msa0540480:intron 40.0%
GTGCTAAGGATAAGCATCTT+AGG + chr4_1:22701693-22701712 Msa0540480:CDS 40.0%
GATAAGCATCTTAGGGTGAA+GGG + chr4_1:22701701-22701720 Msa0540480:CDS 40.0%
AAGTGCTTCACATTACCACT+AGG + chr4_1:22701744-22701763 Msa0540480:CDS 40.0%
CTTTCCAATCTGAATCCAAC+GGG + chr4_1:22702140-22702159 Msa0540480:intron 40.0%
ATCAACAAATTGGTACCCGT+TGG - chr4_1:22702158-22702177 None:intergenic 40.0%
TGAGAACTGTCCATCTTAGA+TGG + chr4_1:22702315-22702334 Msa0540480:intron 40.0%
TCTGACTTAGTGAGATACTG+TGG + chr4_1:22702364-22702383 Msa0540480:intron 40.0%
GTCAGTGTTTGTGCTTCATA+GGG - chr4_1:22702434-22702453 None:intergenic 40.0%
TGTCAGTGTTTGTGCTTCAT+AGG - chr4_1:22702435-22702454 None:intergenic 40.0%
GATTTGGGAATGACATGTGT+TGG - chr4_1:22702536-22702555 None:intergenic 40.0%
!! AGCACTGACACTTCTGATTT+GGG - chr4_1:22702551-22702570 None:intergenic 40.0%
!! TAGCACTGACACTTCTGATT+TGG - chr4_1:22702552-22702571 None:intergenic 40.0%
AGTGCTACATTGAAATTGCG+TGG + chr4_1:22702565-22702584 Msa0540480:intron 40.0%
! AGAATTTGGGAAGAGGGTAT+TGG + chr4_1:22702736-22702755 Msa0540480:intron 40.0%
!! GAATTTGGGAAGAGGGTATT+GGG + chr4_1:22702737-22702756 Msa0540480:intron 40.0%
ATCAGCTTCATGAACTAGTG+CGG + chr4_1:22702987-22703006 Msa0540480:intron 40.0%
GTAATCTGCTTGACAACATC+AGG - chr4_1:22703213-22703232 None:intergenic 40.0%
ACATCGATCACAATTGAACC+CGG + chr4_1:22703231-22703250 Msa0540480:CDS 40.0%
! TTTCTTCTTCTCTGCTGCTT+GGG - chr4_1:22701346-22701365 None:intergenic 40.0%
! TTTTCTTCTTCTCTGCTGCT+TGG - chr4_1:22701347-22701366 None:intergenic 40.0%
!! AGTGTTTGATTTTCAGGGGA+AGG + chr4_1:22701436-22701455 Msa0540480:intron 40.0%
GTGCTAAGGATAAGCATCTT+AGG + chr4_1:22701693-22701712 Msa0540480:CDS 40.0%
GATAAGCATCTTAGGGTGAA+GGG + chr4_1:22701701-22701720 Msa0540480:CDS 40.0%
AAGTGCTTCACATTACCACT+AGG + chr4_1:22701744-22701763 Msa0540480:CDS 40.0%
CTTTCCAATCTGAATCCAAC+GGG + chr4_1:22702140-22702159 Msa0540480:intron 40.0%
ATCAACAAATTGGTACCCGT+TGG - chr4_1:22702158-22702177 None:intergenic 40.0%
TGAGAACTGTCCATCTTAGA+TGG + chr4_1:22702315-22702334 Msa0540480:intron 40.0%
TCTGACTTAGTGAGATACTG+TGG + chr4_1:22702364-22702383 Msa0540480:intron 40.0%
GTCAGTGTTTGTGCTTCATA+GGG - chr4_1:22702434-22702453 None:intergenic 40.0%
TGTCAGTGTTTGTGCTTCAT+AGG - chr4_1:22702435-22702454 None:intergenic 40.0%
GATTTGGGAATGACATGTGT+TGG - chr4_1:22702536-22702555 None:intergenic 40.0%
!! AGCACTGACACTTCTGATTT+GGG - chr4_1:22702551-22702570 None:intergenic 40.0%
!! TAGCACTGACACTTCTGATT+TGG - chr4_1:22702552-22702571 None:intergenic 40.0%
AGTGCTACATTGAAATTGCG+TGG + chr4_1:22702565-22702584 Msa0540480:intron 40.0%
! AGAATTTGGGAAGAGGGTAT+TGG + chr4_1:22702736-22702755 Msa0540480:intron 40.0%
!! GAATTTGGGAAGAGGGTATT+GGG + chr4_1:22702737-22702756 Msa0540480:intron 40.0%
ATCAGCTTCATGAACTAGTG+CGG + chr4_1:22702987-22703006 Msa0540480:intron 40.0%
GTAATCTGCTTGACAACATC+AGG - chr4_1:22703213-22703232 None:intergenic 40.0%
ACATCGATCACAATTGAACC+CGG + chr4_1:22703231-22703250 Msa0540480:CDS 40.0%
!!! CACGGCGATTTGGTTTTTGT+GGG - chr4_1:22701305-22701324 None:intergenic 45.0%
!!! TCACGGCGATTTGGTTTTTG+TGG - chr4_1:22701306-22701325 None:intergenic 45.0%
GAAATGCTTTCACGGCGATT+TGG - chr4_1:22701315-22701334 None:intergenic 45.0%
! TTCTTCTTCTCTGCTGCTTG+GGG - chr4_1:22701345-22701364 None:intergenic 45.0%
TCTTCCAAACCAGGCTTAGT+GGG - chr4_1:22701491-22701510 None:intergenic 45.0%
TTCTTCCAAACCAGGCTTAG+TGG - chr4_1:22701492-22701511 None:intergenic 45.0%
TCCTGAGATTCTTCCAAACC+AGG - chr4_1:22701500-22701519 None:intergenic 45.0%
!! GTTTGTAGTGACTTGGTTCG+TGG + chr4_1:22701671-22701690 Msa0540480:intron 45.0%
GGATAAGCATCTTAGGGTGA+AGG + chr4_1:22701700-22701719 Msa0540480:CDS 45.0%
! ACTTTTGTAGGCATCCTCAC+TGG - chr4_1:22701728-22701747 None:intergenic 45.0%
GTGTTGTCAGACACTAGTGT+CGG - chr4_1:22701986-22702005 None:intergenic 45.0%
GATCATAGTGGTCAGCACAT+TGG + chr4_1:22702039-22702058 Msa0540480:intron 45.0%
! TCAGCACATTGGTGACTGTT+GGG + chr4_1:22702050-22702069 Msa0540480:intron 45.0%
! GAGATACTGTGGTTGCTTTC+TGG + chr4_1:22702375-22702394 Msa0540480:intron 45.0%
! ATACTGTGGTTGCTTTCTGG+TGG + chr4_1:22702378-22702397 Msa0540480:intron 45.0%
TCAGCTTCATGAACTAGTGC+GGG + chr4_1:22702988-22703007 Msa0540480:intron 45.0%
CAACATCAGGTGAACTGTAG+AGG - chr4_1:22703200-22703219 None:intergenic 45.0%
!! ACAGCAACACATTTCTAGCC+AGG - chr4_1:22703344-22703363 None:intergenic 45.0%
!!! CACGGCGATTTGGTTTTTGT+GGG - chr4_1:22701305-22701324 None:intergenic 45.0%
!!! TCACGGCGATTTGGTTTTTG+TGG - chr4_1:22701306-22701325 None:intergenic 45.0%
GAAATGCTTTCACGGCGATT+TGG - chr4_1:22701315-22701334 None:intergenic 45.0%
! TTCTTCTTCTCTGCTGCTTG+GGG - chr4_1:22701345-22701364 None:intergenic 45.0%
TCTTCCAAACCAGGCTTAGT+GGG - chr4_1:22701491-22701510 None:intergenic 45.0%
TTCTTCCAAACCAGGCTTAG+TGG - chr4_1:22701492-22701511 None:intergenic 45.0%
TCCTGAGATTCTTCCAAACC+AGG - chr4_1:22701500-22701519 None:intergenic 45.0%
!! GTTTGTAGTGACTTGGTTCG+TGG + chr4_1:22701671-22701690 Msa0540480:intron 45.0%
GGATAAGCATCTTAGGGTGA+AGG + chr4_1:22701700-22701719 Msa0540480:CDS 45.0%
! ACTTTTGTAGGCATCCTCAC+TGG - chr4_1:22701728-22701747 None:intergenic 45.0%
GTGTTGTCAGACACTAGTGT+CGG - chr4_1:22701986-22702005 None:intergenic 45.0%
GATCATAGTGGTCAGCACAT+TGG + chr4_1:22702039-22702058 Msa0540480:intron 45.0%
! TCAGCACATTGGTGACTGTT+GGG + chr4_1:22702050-22702069 Msa0540480:intron 45.0%
! GAGATACTGTGGTTGCTTTC+TGG + chr4_1:22702375-22702394 Msa0540480:intron 45.0%
! ATACTGTGGTTGCTTTCTGG+TGG + chr4_1:22702378-22702397 Msa0540480:intron 45.0%
TCAGCTTCATGAACTAGTGC+GGG + chr4_1:22702988-22703007 Msa0540480:intron 45.0%
CAACATCAGGTGAACTGTAG+AGG - chr4_1:22703200-22703219 None:intergenic 45.0%
!! ACAGCAACACATTTCTAGCC+AGG - chr4_1:22703344-22703363 None:intergenic 45.0%
GCAATGAAACCCACTAAGCC+TGG + chr4_1:22701479-22701498 Msa0540480:CDS 50.0%
GAAACCCACTAAGCCTGGTT+TGG + chr4_1:22701484-22701503 Msa0540480:CDS 50.0%
!! GCCTGGTTTGGAAGAATCTC+AGG + chr4_1:22701496-22701515 Msa0540480:CDS 50.0%
!! TGACTTGGTTCGTGGTGCTA+AGG + chr4_1:22701679-22701698 Msa0540480:CDS 50.0%
ACCACTAGGAAAACCCCTTG+TGG + chr4_1:22701758-22701777 Msa0540480:CDS 50.0%
! TCCACAAGGGGTTTTCCTAG+TGG - chr4_1:22701762-22701781 None:intergenic 50.0%
AGGAAAACCCCTTGTGGAGA+AGG + chr4_1:22701764-22701783 Msa0540480:CDS 50.0%
! GTCAGCACATTGGTGACTGT+TGG + chr4_1:22702049-22702068 Msa0540480:intron 50.0%
GGTACCCGTTGGATTCAGAT+TGG - chr4_1:22702147-22702166 None:intergenic 50.0%
GTAACCTCAACTTCGACACC+GGG - chr4_1:22703252-22703271 None:intergenic 50.0%
GGTAACCTCAACTTCGACAC+CGG - chr4_1:22703253-22703272 None:intergenic 50.0%
!! GCAACACATTTCTAGCCAGG+AGG - chr4_1:22703341-22703360 None:intergenic 50.0%
GCAATGAAACCCACTAAGCC+TGG + chr4_1:22701479-22701498 Msa0540480:CDS 50.0%
GAAACCCACTAAGCCTGGTT+TGG + chr4_1:22701484-22701503 Msa0540480:CDS 50.0%
!! GCCTGGTTTGGAAGAATCTC+AGG + chr4_1:22701496-22701515 Msa0540480:CDS 50.0%
!! TGACTTGGTTCGTGGTGCTA+AGG + chr4_1:22701679-22701698 Msa0540480:CDS 50.0%
ACCACTAGGAAAACCCCTTG+TGG + chr4_1:22701758-22701777 Msa0540480:CDS 50.0%
! TCCACAAGGGGTTTTCCTAG+TGG - chr4_1:22701762-22701781 None:intergenic 50.0%
AGGAAAACCCCTTGTGGAGA+AGG + chr4_1:22701764-22701783 Msa0540480:CDS 50.0%
! GTCAGCACATTGGTGACTGT+TGG + chr4_1:22702049-22702068 Msa0540480:intron 50.0%
GGTACCCGTTGGATTCAGAT+TGG - chr4_1:22702147-22702166 None:intergenic 50.0%
GTAACCTCAACTTCGACACC+GGG - chr4_1:22703252-22703271 None:intergenic 50.0%
GGTAACCTCAACTTCGACAC+CGG - chr4_1:22703253-22703272 None:intergenic 50.0%
!! GCAACACATTTCTAGCCAGG+AGG - chr4_1:22703341-22703360 None:intergenic 50.0%
TTAGGGTGAAGGGACCAGTG+AGG + chr4_1:22701711-22701730 Msa0540480:CDS 55.0%
! TGAACCCGGTGTCGAAGTTG+AGG + chr4_1:22703245-22703264 Msa0540480:CDS 55.0%
TTAGGGTGAAGGGACCAGTG+AGG + chr4_1:22701711-22701730 Msa0540480:CDS 55.0%
! TGAACCCGGTGTCGAAGTTG+AGG + chr4_1:22703245-22703264 Msa0540480:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 22701287 22703622 22701287 ID=Msa0540480;Name=Msa0540480
chr4_1 mRNA 22701287 22703622 22701287 ID=Msa0540480-mRNA-1;Parent=Msa0540480;Name=Msa0540480-mRNA-1;_AED=0.06;_eAED=0.06;_QI=102|1|1|1|0.66|0.5|4|335|122
chr4_1 exon 22701287 22701373 22701287 ID=Msa0540480-mRNA-1:exon:6322;Parent=Msa0540480-mRNA-1
chr4_1 exon 22701452 22701578 22701452 ID=Msa0540480-mRNA-1:exon:6323;Parent=Msa0540480-mRNA-1
chr4_1 exon 22701672 22701785 22701672 ID=Msa0540480-mRNA-1:exon:6324;Parent=Msa0540480-mRNA-1
chr4_1 exon 22703145 22703622 22703145 ID=Msa0540480-mRNA-1:exon:6325;Parent=Msa0540480-mRNA-1
chr4_1 five_prime_UTR 22701287 22701373 22701287 ID=Msa0540480-mRNA-1:five_prime_utr;Parent=Msa0540480-mRNA-1
chr4_1 five_prime_UTR 22701452 22701466 22701452 ID=Msa0540480-mRNA-1:five_prime_utr;Parent=Msa0540480-mRNA-1
chr4_1 CDS 22701467 22701578 22701467 ID=Msa0540480-mRNA-1:cds;Parent=Msa0540480-mRNA-1
chr4_1 CDS 22701672 22701785 22701672 ID=Msa0540480-mRNA-1:cds;Parent=Msa0540480-mRNA-1
chr4_1 CDS 22703145 22703287 22703145 ID=Msa0540480-mRNA-1:cds;Parent=Msa0540480-mRNA-1
chr4_1 three_prime_UTR 22703288 22703622 22703288 ID=Msa0540480-mRNA-1:three_prime_utr;Parent=Msa0540480-mRNA-1
Gene Sequence

>Msa0540480

ATGGCATACGCTGCAATGAAACCCACTAAGCCTGGTTTGGAAGAATCTCAGGAACAGATCCATAAGATTAGGATCACTCTCTCTTCAAAACATGTTCAGAATCTCGAAAAGGTTTGTAGTGACTTGGTTCGTGGTGCTAAGGATAAGCATCTTAGGGTGAAGGGACCAGTGAGGATGCCTACAAAAGTGCTTCACATTACCACTAGGAAAACCCCTTGTGGAGAAGGTACAAACACATGGGACAGATTTGAGCTGCGTGTGCACAAGAGAGTCATTGACCTCTACAGTTCACCTGATGTTGTCAAGCAGATTACATCGATCACAATTGAACCCGGTGTCGAAGTTGAGGTTACCATTGCAGATGCTTGA

Protein sequence

>Msa0540480

MAYAAMKPTKPGLEESQEQIHKIRITLSSKHVQNLEKVCSDLVRGAKDKHLRVKGPVRMPTKVLHITTRKTPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA*