AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0601880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0601880 MtrunA17_Chr4g0028991 100.000 135 0 0 9 143 712 846 1.04e-93 288
Msa0601880 MtrunA17_Chr2g0326731 80.741 135 25 1 9 143 706 839 7.50e-73 233
Msa0601880 MtrunA17_Chr2g0292391 66.667 135 42 2 11 143 703 836 7.90e-60 197
Msa0601880 MtrunA17_Chr8g0340411 63.910 133 47 1 11 143 701 832 1.23e-56 188
Msa0601880 MtrunA17_Chr3g0140351 62.687 134 47 2 10 143 705 835 1.70e-56 188
Msa0601880 MtrunA17_Chr2g0331131 63.158 133 48 1 11 143 705 836 5.32e-56 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0601880 AT5G60690.1 76.259 139 29 2 9 143 704 842 5.32e-68 220
Msa0601880 AT1G52150.1 66.917 133 43 1 11 143 705 836 4.57e-60 198
Msa0601880 AT1G52150.2 66.917 133 43 1 11 143 706 837 4.60e-60 198
Msa0601880 AT2G34710.1 68.116 138 40 3 9 143 716 852 1.05e-58 195
Msa0601880 AT1G30490.1 66.187 139 42 3 9 143 704 841 4.02e-57 190
Msa0601880 AT4G32880.1 62.222 135 45 4 11 143 703 833 2.90e-51 174
Msa0601880 AT1G52150.3 66.667 84 28 0 11 94 705 788 4.37e-35 128

Find 251 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTAATCAGTTACTATT+TGG 0.070575 4_2:-44947575 Msa0601880:CDS
TAGCTCCTGCCCGGGATTTC+TGG 0.127870 4_2:-44949989 Msa0601880:five_prime_UTR
GATAGAATATGACAAGTTTA+AGG 0.143295 4_2:+44952025 None:intergenic
TAGCTTTCTCTTTCATAAAT+TGG 0.177453 4_2:-44946960 Msa0601880:CDS
CATCACCAACATGCTTATTA+AGG 0.209228 4_2:-44952470 Msa0601880:five_prime_UTR
CCCAAATAGTAACTGATTAA+AGG 0.214325 4_2:+44947574 None:intergenic
CTCAATGGTTCCTCCATTTC+CGG 0.218751 4_2:+44950121 None:intergenic
TGAGCAGCAGCAGTTGAATT+AGG 0.229833 4_2:+44949801 None:intergenic
GAACGTTCCTCCTGCGGTTT+TGG 0.238613 4_2:-44948942 Msa0601880:five_prime_UTR
GAATTAATCTTGTAAATTAT+TGG 0.241549 4_2:-44946803 Msa0601880:three_prime_UTR
AATGGATTTGCCAGAGTTAT+AGG 0.256447 4_2:-44947680 Msa0601880:five_prime_UTR
ACCAAGATAAACGATCTTTA+AGG 0.256930 4_2:+44950186 None:intergenic
AGTTTAAGGGAAAATGAAAA+TGG 0.259645 4_2:+44952039 None:intergenic
CCTTTAATCAGTTACTATTT+GGG 0.264850 4_2:-44947574 Msa0601880:CDS
TAGGGATATTCACCTGTTAC+AGG 0.269982 4_2:-44948526 Msa0601880:intron
GAAACATTGTGAAAACTTCT+AGG 0.277838 4_2:+44950147 None:intergenic
GATGCTCCATTGGTGCCTTC+TGG 0.293806 4_2:-44948206 Msa0601880:five_prime_UTR
TGAGCTAGTGTAACTGCTTC+TGG 0.294323 4_2:+44947702 None:intergenic
AGAAAATGAACAAGAAAGTT+TGG 0.295020 4_2:+44952077 None:intergenic
GGCTTCAATGACGCTGTAAA+TGG 0.300316 4_2:-44949203 Msa0601880:five_prime_UTR
GAGAGGTCCCTGTCTGGTTC+TGG 0.318135 4_2:-44949831 Msa0601880:five_prime_UTR
TAAAGTGGTCGTAGCACTTC+TGG 0.321828 4_2:+44949589 None:intergenic
GTGGCTACCTGCTCAATCTT+TGG 0.322456 4_2:+44949350 None:intergenic
TGCAGATGCTTGAAGTTATT+AGG 0.326140 4_2:-44948590 Msa0601880:intron
TGATTGCCAGTGAATCTTGT+AGG 0.327004 4_2:+44948815 None:intergenic
ATAGAATATGACAAGTTTAA+GGG 0.328788 4_2:+44952026 None:intergenic
TTGAGATCAGATTCTCTTGT+TGG 0.331182 4_2:-44947541 Msa0601880:CDS
GATAGGCACTTCGATATATT+AGG 0.337752 4_2:-44949447 Msa0601880:intron
CAGTATCAATCAAGAGAAAA+AGG 0.339257 4_2:+44952441 None:intergenic
TTGCCAGCCTGGTCCGGATT+CGG 0.344725 4_2:-44950419 Msa0601880:intron
TCCCTGTCTGGTTCTGGCAC+TGG 0.345502 4_2:-44949825 Msa0601880:five_prime_UTR
GTTGATTGGGTCCAGATGCC+TGG 0.352645 4_2:-44950781 Msa0601880:five_prime_UTR
TCTGGGAACATTTCATCAAT+TGG 0.355893 4_2:+44948230 None:intergenic
CTTGAAGTTATTAGGCTTGA+AGG 0.356810 4_2:-44948582 Msa0601880:five_prime_UTR
GGGTTTGCTTATCTGCCAGC+TGG 0.357471 4_2:-44947075 Msa0601880:CDS
CAAGATAAGTTTGAATGAAA+TGG 0.365439 4_2:+44952283 None:intergenic
GGCACCAATGGAGCATCATC+TGG 0.365656 4_2:+44948212 None:intergenic
TCTTAGATACACTACAACTT+TGG 0.376901 4_2:-44949964 Msa0601880:five_prime_UTR
AGTATGGAATTTACCTTTGT+AGG 0.379004 4_2:+44950325 None:intergenic
TGGAGAACCAGGAGAAAGTT+TGG 0.380345 4_2:+44947722 None:intergenic
ATTGATAAGCATCTAGATTC+AGG 0.380570 4_2:-44951852 Msa0601880:five_prime_UTR
ACAATGTTTCCTGCCGGAAA+TGG 0.381342 4_2:-44950134 Msa0601880:five_prime_UTR
TTCTCTTTGCCAGCCTGGTC+CGG 0.383123 4_2:-44950425 Msa0601880:intron
AGTAAGGCATTACCTGTAAC+AGG 0.384968 4_2:+44948514 None:intergenic
GGTGAAGTGGTATACGGATT+AGG 0.388453 4_2:-44949403 Msa0601880:five_prime_UTR
CCAAATAGTAACTGATTAAA+GGG 0.394357 4_2:+44947575 None:intergenic
AACCAAACCTTGATCTGTTT+AGG 0.396617 4_2:+44951702 None:intergenic
TCCTTAAAGATCGTTTATCT+TGG 0.397827 4_2:-44950187 Msa0601880:five_prime_UTR
CAAGGCTTCAAACTGTGAAT+AGG 0.399527 4_2:-44951540 Msa0601880:five_prime_UTR
GAAAGTTTGGCACCAACAGC+TGG 0.405904 4_2:+44947735 None:intergenic
AGACCTTCATCCCAGGCATC+TGG 0.407117 4_2:+44950770 None:intergenic
TCGAGTGGTGAAGTGGTATA+CGG 0.413960 4_2:-44949409 Msa0601880:five_prime_UTR
TAGATTCAGGGAAATATGTT+AGG 0.416438 4_2:-44951839 Msa0601880:five_prime_UTR
CTACAGGAACTGCTGTTGAT+TGG 0.418349 4_2:-44950795 Msa0601880:five_prime_UTR
CTAATCAATGATAAATTTGA+AGG 0.418547 4_2:-44946905 Msa0601880:three_prime_UTR
TACAGGAACTGCTGTTGATT+GGG 0.419994 4_2:-44950794 Msa0601880:five_prime_UTR
GCAAAGATCCCAACCGAATC+CGG 0.421507 4_2:+44950406 None:intergenic
GAGCAGCAGCAGTTGAATTA+GGG 0.422108 4_2:+44949802 None:intergenic
GTAGCCACTCGGGAGCATTT+CGG 0.422529 4_2:+44949767 None:intergenic
GTTGGTGCCAAACTTTCTCC+TGG 0.425700 4_2:-44947729 Msa0601880:five_prime_UTR
CCTCATCCCTGGATAGGTAT+AGG 0.426828 4_2:+44948838 None:intergenic
CAATCACACTACGAACATAT+TGG 0.427372 4_2:+44947805 None:intergenic
TGTTGTCTTCTCATGGAACT+AGG 0.427476 4_2:+44951762 None:intergenic
GGGATCTGCATGTCGACAAT+GGG 0.430271 4_2:-44947054 Msa0601880:CDS
CAGTGTCCGGTTTGTATTCA+CGG 0.430832 4_2:+44947977 None:intergenic
AACCTAAACAGATCAAGGTT+TGG 0.433904 4_2:-44951704 Msa0601880:five_prime_UTR
GCAGGAACCTATACCTATCC+AGG 0.434369 4_2:-44948845 Msa0601880:five_prime_UTR
CAATGAACAGTGTTATCTTC+TGG 0.436228 4_2:+44946985 None:intergenic
CACTGCCGTGAGTTGTCGTT+GGG 0.437038 4_2:+44947928 None:intergenic
CAATCAAATAATCATGCCTC+TGG 0.439280 4_2:-44948798 Msa0601880:five_prime_UTR
CAGCCTGGTCCGGATTCGGT+TGG 0.444015 4_2:-44950415 Msa0601880:five_prime_UTR
GCAAGTTCCCTCACATTGCT+TGG 0.446182 4_2:-44949080 Msa0601880:five_prime_UTR
GATAAAATATTTGACGAGTC+TGG 0.446806 4_2:-44947241 Msa0601880:CDS
AGTGAAGTTGTCTTTGTCCT+AGG 0.447473 4_2:+44952361 None:intergenic
GCAAGATAATGTTGTAATCA+TGG 0.449611 4_2:-44947832 Msa0601880:five_prime_UTR
AGCAAAGAAAAGAGGCTTCA+AGG 0.453264 4_2:-44951558 Msa0601880:five_prime_UTR
GTTTAAGGGAAAATGAAAAT+GGG 0.454899 4_2:+44952040 None:intergenic
AATCAATTGTTGTCTTCTCA+TGG 0.455291 4_2:+44951755 None:intergenic
CGTAGACTTGCCTATAACTC+TGG 0.455597 4_2:+44947670 None:intergenic
AATCACCTGTTGCATTAACT+TGG 0.458317 4_2:+44947192 None:intergenic
AGCAATGTGAGGGAACTTGC+TGG 0.458432 4_2:+44949083 None:intergenic
GTTTGTGAGAGGTCCCTGTC+TGG 0.459213 4_2:-44949837 Msa0601880:five_prime_UTR
CAACGACGCTAGCTCCTGCC+CGG 0.459822 4_2:-44949998 Msa0601880:five_prime_UTR
GGTTCAATGTTGGAAAGAAT+AGG 0.460052 4_2:+44951723 None:intergenic
AGCCTGGTCCGGATTCGGTT+GGG 0.462774 4_2:-44950414 Msa0601880:five_prime_UTR
AAGTCTCCTCCGCAATTGAT+AGG 0.463644 4_2:+44950839 None:intergenic
TCTTGCATAGTGCTGTCAAA+TGG 0.464792 4_2:+44947849 None:intergenic
GGTCCAGATGCCTGGGATGA+AGG 0.464996 4_2:-44950773 Msa0601880:intron
CATTGAACCTAAACAGATCA+AGG 0.465302 4_2:-44951709 Msa0601880:five_prime_UTR
TTTGGTATTGCAGTCGCAGC+CGG 0.467861 4_2:-44947338 Msa0601880:intron
CTCTGTGCAGAGGGTTGCTA+TGG 0.473257 4_2:-44947781 Msa0601880:five_prime_UTR
TACTGATGCAAGTTGTGATT+CGG 0.473449 4_2:-44951008 Msa0601880:five_prime_UTR
CTTCTCATGGAACTAGGCTT+AGG 0.473637 4_2:+44951768 None:intergenic
GTCTTACTTCAAGATTTAAG+TGG 0.475390 4_2:+44949697 None:intergenic
ACAAGACTATATTCCTTCCT+AGG 0.476603 4_2:-44952378 Msa0601880:five_prime_UTR
TATCTTGGTTTCGCGAGTGT+CGG 0.476648 4_2:-44950172 Msa0601880:five_prime_UTR
CTTAATAAGCATGTTGGTGA+TGG 0.477301 4_2:+44952471 None:intergenic
AATCTAATTAAATGCAAACT+TGG 0.478916 4_2:+44946854 None:intergenic
CTTGCATAGTGCTGTCAAAT+GGG 0.480660 4_2:+44947850 None:intergenic
TGTTGATGGAGGAAAATGAT+AGG 0.483631 4_2:-44951495 Msa0601880:five_prime_UTR
TACTGAACAAGTTGAAGCAT+TGG 0.483862 4_2:-44951811 Msa0601880:five_prime_UTR
AAGGGAGCACCGCTCAGAAT+GGG 0.484393 4_2:-44948909 Msa0601880:five_prime_UTR
ATCTAAGAGTCCAGAAATCC+CGG 0.484814 4_2:+44949979 None:intergenic
AAATTTGAAGGGGTAAAATC+AGG 0.486204 4_2:-44946893 Msa0601880:three_prime_UTR
GCATCAGTATTTGCTGCTGA+TGG 0.488575 4_2:+44951022 None:intergenic
AAAGAAAGGAATGAAGAAGA+AGG 0.489195 4_2:+44952498 None:intergenic
GAAATGGAGCTTGAGTTAGA+AGG 0.492851 4_2:+44952299 None:intergenic
CGGGCAGGAGCTAGCGTCGT+TGG 0.492905 4_2:+44949999 None:intergenic
AGAGATGCTACTAACCCTGC+TGG 0.494241 4_2:-44950959 Msa0601880:five_prime_UTR
ACCTTTGGTGATTCATAAAG+TGG 0.494265 4_2:+44949574 None:intergenic
GCACTGCCGTGAGTTGTCGT+TGG 0.495965 4_2:+44947927 None:intergenic
CATTACCTTGTGAACCAAGA+TGG 0.497411 4_2:+44952154 None:intergenic
TCACAGCTTGTGTGTGAGAA+TGG 0.498450 4_2:-44951457 Msa0601880:five_prime_UTR
TGCAATGAACAAGTTGTTGA+TGG 0.500516 4_2:-44951509 Msa0601880:five_prime_UTR
CTGAATGTTCGCAAAACAGC+AGG 0.501563 4_2:+44949373 None:intergenic
ATCCCAACCGAATCCGGACC+AGG 0.503586 4_2:+44950412 None:intergenic
CTTGCAGAACGTTCCTCCTG+CGG 0.506379 4_2:-44948948 Msa0601880:intron
GAGTGAAGTTGAGACTTGTA+TGG 0.508388 4_2:-44946772 Msa0601880:three_prime_UTR
GGCCAGTGCCAGAACCAGAC+AGG 0.510237 4_2:+44949823 None:intergenic
GGTTTGCTTATCTGCCAGCT+GGG 0.514174 4_2:-44947074 Msa0601880:CDS
ATATATTAGGCAAATAGCTC+AGG 0.515140 4_2:-44949434 Msa0601880:five_prime_UTR
ACAAGTTGAAGCATTGGAAA+GGG 0.515957 4_2:-44951805 Msa0601880:five_prime_UTR
AGGCAATAGTCAACACTGAT+CGG 0.516074 4_2:+44947880 None:intergenic
TAAGGGAGCACCGCTCAGAA+TGG 0.516788 4_2:-44948910 Msa0601880:five_prime_UTR
GAGTTCCTTTCAAAGGCTAC+AGG 0.517677 4_2:-44950811 Msa0601880:five_prime_UTR
GGCAATAGTCAACACTGATC+GGG 0.517701 4_2:+44947881 None:intergenic
TTGATTGGGTCCAGATGCCT+GGG 0.519139 4_2:-44950780 Msa0601880:five_prime_UTR
AAGCAGTTACACTAGCTCAA+TGG 0.520279 4_2:-44947698 Msa0601880:five_prime_UTR
TAGTATCTGTCTAGTTTGAA+AGG 0.520632 4_2:-44946725 Msa0601880:three_prime_UTR
ACCAACAGCTGGGTTTATAC+CGG 0.520732 4_2:+44947746 None:intergenic
GTCGACATGCAGATCCCAGC+TGG 0.520952 4_2:+44947060 None:intergenic
CGGACACTGGATTTGACGTC+AGG 0.521504 4_2:-44947963 Msa0601880:five_prime_UTR
GATCTGTTTAGGTTCAATGT+TGG 0.526382 4_2:+44951713 None:intergenic
TTTACAAGATTAATTCAACT+TGG 0.526796 4_2:+44946810 None:intergenic
GCTATGGCTATTTCTCCGTC+CGG 0.528716 4_2:-44947765 Msa0601880:five_prime_UTR
ATAGAAAGTAGTAGTAGTGG+TGG 0.530086 4_2:-44951879 Msa0601880:five_prime_UTR
TTGAGGTTAGTGTGTTGTGT+GGG 0.530255 4_2:-44951939 Msa0601880:five_prime_UTR
TGGGATCTGCATGTCGACAA+TGG 0.533448 4_2:-44947055 Msa0601880:CDS
CATGGCTATGGCTATGGCTG+TGG 0.534941 4_2:-44951910 Msa0601880:five_prime_UTR
CATCTTGGTTCACAAGGTAA+TGG 0.535554 4_2:-44952153 Msa0601880:five_prime_UTR
TTCGTATTTGCAAATCAAGC+TGG 0.538416 4_2:-44947313 Msa0601880:CDS
CTGTGTGTAAATAAGCTCAA+TGG 0.538636 4_2:+44950106 None:intergenic
AAGAAACATGGCTATGGCTA+TGG 0.538767 4_2:-44951916 Msa0601880:five_prime_UTR
AATCAAATAATCATGCCTCT+GGG 0.539339 4_2:-44948797 Msa0601880:five_prime_UTR
TGGAGCTTGAGTTAGAAGGA+AGG 0.539812 4_2:+44952303 None:intergenic
ATGAGGCCTACAAGATTCAC+TGG 0.543583 4_2:-44948821 Msa0601880:five_prime_UTR
AATAAGCATGTTGGTGATGG+AGG 0.543677 4_2:+44952474 None:intergenic
TTTGACAGAGTTCCTTTCAA+AGG 0.544138 4_2:-44950818 Msa0601880:five_prime_UTR
TTGATAAGCATCTAGATTCA+GGG 0.546019 4_2:-44951851 Msa0601880:five_prime_UTR
CGGAAACCAGAAGGCACCAA+TGG 0.546575 4_2:+44948200 None:intergenic
GTAACTGCTTCTGGAGAACC+AGG 0.547189 4_2:+44947711 None:intergenic
AATCTTGTAGGCCTCATCCC+TGG 0.549464 4_2:+44948827 None:intergenic
CAGTTCCTGTAGCCTTTGAA+AGG 0.551448 4_2:+44950806 None:intergenic
TAATCAATGATAAATTTGAA+GGG 0.552134 4_2:-44946904 Msa0601880:three_prime_UTR
AACAAGTTGAAGCATTGGAA+AGG 0.552407 4_2:-44951806 Msa0601880:five_prime_UTR
AGGATGCCGTGAATACAAAC+CGG 0.553865 4_2:-44947983 Msa0601880:five_prime_UTR
AAGTTGTCTTTGTCCTAGGA+AGG 0.553870 4_2:+44952365 None:intergenic
ATGGTTCCTCCATTTCCGGC+AGG 0.554780 4_2:+44950125 None:intergenic
CTGACGTCAAATCCAGTGTC+CGG 0.556266 4_2:+44947964 None:intergenic
CTTTAATCAGTTACTATTTG+GGG 0.557407 4_2:-44947573 Msa0601880:CDS
AACAGCATAAAATCGCGTCC+TGG 0.557589 4_2:+44947488 None:intergenic
TTATGAATCACCAAAGGTGG+TGG 0.558033 4_2:-44949569 Msa0601880:five_prime_UTR
GAAACAACTGTGGCATCACC+AGG 0.558649 4_2:-44947506 Msa0601880:CDS
GGACTGATGAGAACGCTGTT+GGG 0.559056 4_2:-44948277 Msa0601880:five_prime_UTR
AATGGAATCAATAAAAGAGA+AGG 0.560120 4_2:+44952217 None:intergenic
ATGGAATCAATAAAAGAGAA+GGG 0.560824 4_2:+44952218 None:intergenic
GCGATTTCACAAAGTTGTAG+TGG 0.563887 4_2:-44950385 Msa0601880:five_prime_UTR
GTTCCCAGATGATGCTCCAT+TGG 0.566789 4_2:-44948216 Msa0601880:five_prime_UTR
TGTGATTGCCTCTGTGCAGA+GGG 0.568272 4_2:-44947790 Msa0601880:five_prime_UTR
TCCTGCTTTCAGTGATGCAG+CGG 0.568391 4_2:+44948862 None:intergenic
GGTCGAATCAAGTAGCCACT+CGG 0.568475 4_2:+44949756 None:intergenic
ATTTGACGAGTCTGGTCGCA+AGG 0.571396 4_2:-44947233 Msa0601880:CDS
TCCGCTGCATCACTGAAAGC+AGG 0.573762 4_2:-44948863 Msa0601880:five_prime_UTR
AAAGTTTGGCACCAACAGCT+GGG 0.574992 4_2:+44947736 None:intergenic
TTCACAAAGTTGTAGTGGAG+TGG 0.575629 4_2:-44950380 Msa0601880:five_prime_UTR
TGTAGGCCTCATCCCTGGAT+AGG 0.575673 4_2:+44948832 None:intergenic
TTGATTAGTAGCATTCACAT+TGG 0.576341 4_2:+44946920 None:intergenic
GAACACAATTGAACATGAAG+AGG 0.579319 4_2:-44948774 Msa0601880:intron
CATTCAGCCAAAGATTGAGC+AGG 0.580203 4_2:-44949357 Msa0601880:intron
ATGTTTCCTGCCGGAAATGG+AGG 0.580359 4_2:-44950131 Msa0601880:five_prime_UTR
TCCGGTATAAACCCAGCTGT+TGG 0.580698 4_2:-44947747 Msa0601880:five_prime_UTR
GCACCAATGGAGCATCATCT+GGG 0.585521 4_2:+44948213 None:intergenic
CGTACGAGCAAGCTATTGCA+TGG 0.586855 4_2:-44947020 Msa0601880:CDS
CTTGAGGTTAGTGTGTTGTG+TGG 0.587242 4_2:-44951940 Msa0601880:five_prime_UTR
TAGAGAGAAGCAAAGAAAAG+AGG 0.587959 4_2:-44951566 Msa0601880:five_prime_UTR
AGTTCCCTCACATTGCTTGG+AGG 0.589621 4_2:-44949077 Msa0601880:five_prime_UTR
GTAAATGGATTCAGTGATGA+TGG 0.590567 4_2:-44949188 Msa0601880:five_prime_UTR
GTGAACCCAACGACAACTCA+CGG 0.590708 4_2:-44947933 Msa0601880:five_prime_UTR
CGTGAATACAAACCGGACAC+TGG 0.591523 4_2:-44947976 Msa0601880:five_prime_UTR
GAGTTGTTTCTAACATGTCA+AGG 0.591590 4_2:+44947290 None:intergenic
ATTCGACCATGTGATGGTGG+AGG 0.591654 4_2:-44949741 Msa0601880:five_prime_UTR
AACGACGCTAGCTCCTGCCC+GGG 0.593425 4_2:-44949997 Msa0601880:five_prime_UTR
GGGACTGATGAGAACGCTGT+TGG 0.594775 4_2:-44948278 Msa0601880:five_prime_UTR
TGTTAGTTTAGAACCTACAA+AGG 0.596128 4_2:-44950338 Msa0601880:intron
AGGTTTGGTTCCAAAATCGA+AGG 0.597184 4_2:-44951689 Msa0601880:intron
AGAGTCCAGAAATCCCGGGC+AGG 0.597452 4_2:+44949984 None:intergenic
AAATAAGAGACCTTCATCCC+AGG 0.600192 4_2:+44950763 None:intergenic
TGGTCTATACTGAACTGTGA+TGG 0.602711 4_2:-44949164 Msa0601880:five_prime_UTR
TTGCAGACTCCTATCAATTG+CGG 0.602778 4_2:-44950848 Msa0601880:intron
CATCTTCTTGAGCAAGAGAG+TGG 0.603372 4_2:+44948559 None:intergenic
CATATAGAAAGTAGTAGTAG+TGG 0.603914 4_2:-44951882 Msa0601880:five_prime_UTR
GAGATGCTACTAACCCTGCT+GGG 0.605907 4_2:-44950958 Msa0601880:intron
AGAAAGCGAACCAAAACCGC+AGG 0.606717 4_2:+44948932 None:intergenic
GTCGAATCAAGTAGCCACTC+GGG 0.608954 4_2:+44949757 None:intergenic
TGATTTGCAAATACGAACAC+CGG 0.610151 4_2:+44947319 None:intergenic
GGGATGATGCGGAAACCAGA+AGG 0.615520 4_2:+44948191 None:intergenic
ATCAAATAATCATGCCTCTG+GGG 0.615769 4_2:-44948796 Msa0601880:five_prime_UTR
TCAGGAATCGAGTGGTGAAG+TGG 0.617819 4_2:-44949416 Msa0601880:five_prime_UTR
GCCAGTGCCAGAACCAGACA+GGG 0.617845 4_2:+44949824 None:intergenic
AGCACTTCTGGCACACTCCA+CGG 0.619267 4_2:+44949601 None:intergenic
TTGAATCTAATGGGATGATG+CGG 0.619863 4_2:+44948180 None:intergenic
GCATCTCTCTTAGAATTCTG+AGG 0.619916 4_2:+44950974 None:intergenic
AAGCGAACCAAAACCGCAGG+AGG 0.620397 4_2:+44948935 None:intergenic
CATTGAGCTTATTTACACAC+AGG 0.620551 4_2:-44950105 Msa0601880:intron
GAATTCCTCCAAGCAATGTG+AGG 0.621910 4_2:+44949072 None:intergenic
CCTATACCTATCCAGGGATG+AGG 0.624633 4_2:-44948838 Msa0601880:five_prime_UTR
AATCAATGATAAATTTGAAG+GGG 0.627757 4_2:-44946903 Msa0601880:three_prime_UTR
GTGTGATTGCCTCTGTGCAG+AGG 0.628709 4_2:-44947791 Msa0601880:five_prime_UTR
ATGGATTCAGTGATGATGGT+TGG 0.628950 4_2:-44949184 Msa0601880:five_prime_UTR
TACACTACAACTTTGGACAA+TGG 0.630488 4_2:-44949957 Msa0601880:five_prime_UTR
CAGACTCCTATCAATTGCGG+AGG 0.631681 4_2:-44950845 Msa0601880:five_prime_UTR
TACTTGATTCGACCATGTGA+TGG 0.633229 4_2:-44949747 Msa0601880:five_prime_UTR
TGTGGGAAGAAACATGGCTA+TGG 0.633966 4_2:-44951922 Msa0601880:five_prime_UTR
GCTGTCAAATGGGAACTGAA+AGG 0.634191 4_2:+44947860 None:intergenic
TTGGTGATGGAGGAAAAGAA+AGG 0.634397 4_2:+44952484 None:intergenic
AGCTCAGATGTCAAGAAACA+TGG 0.635770 4_2:+44952558 None:intergenic
AATTCCTCCAAGCAATGTGA+GGG 0.636010 4_2:+44949073 None:intergenic
ACTGAACTGTGATGGTGCTG+AGG 0.636112 4_2:-44949156 Msa0601880:five_prime_UTR
GGAGTGGCAGCTCGAGCTTG+CGG 0.638597 4_2:-44950364 Msa0601880:five_prime_UTR
TTTGGACAATGGCAGTCTTG+TGG 0.639500 4_2:-44949946 Msa0601880:intron
TCTAAGAGTCCAGAAATCCC+GGG 0.642124 4_2:+44949980 None:intergenic
GATTTAAGTGGTCTACAATG+TGG 0.642422 4_2:+44949709 None:intergenic
TGTTCAATTGTGTTCCCCAG+AGG 0.648149 4_2:+44948782 None:intergenic
ATTGAACCTCCACCATCACA+TGG 0.648754 4_2:+44949735 None:intergenic
CAGGAACCTATACCTATCCA+GGG 0.651449 4_2:-44948844 Msa0601880:five_prime_UTR
TTGATTCGACCATGTGATGG+TGG 0.653641 4_2:-44949744 Msa0601880:five_prime_UTR
ACTTTATGAATCACCAAAGG+TGG 0.655976 4_2:-44949572 Msa0601880:five_prime_UTR
AGCTTTACAAGACATCACAT+TGG 0.658238 4_2:-44947263 Msa0601880:CDS
TCTGCATGTCGACAATGGGG+CGG 0.660182 4_2:-44947050 Msa0601880:CDS
GTGTTGTGTGGGAAGAAACA+TGG 0.666880 4_2:-44951928 Msa0601880:five_prime_UTR
GAATCAATAAAAGAGAAGGG+TGG 0.666901 4_2:+44952221 None:intergenic
ACAGCTGGGTTTATACCGGA+CGG 0.670270 4_2:+44947750 None:intergenic
GGATCTGCATGTCGACAATG+GGG 0.672158 4_2:-44947053 Msa0601880:CDS
ACCACTTTATGAATCACCAA+AGG 0.678609 4_2:-44949575 Msa0601880:five_prime_UTR
CAAATAGCTCAGGAATCGAG+TGG 0.680372 4_2:-44949424 Msa0601880:five_prime_UTR
TGTGTGAGAATGGATTTATG+AGG 0.695971 4_2:-44951447 Msa0601880:five_prime_UTR
AATGAACAAGTTGTTGATGG+AGG 0.713928 4_2:-44951506 Msa0601880:five_prime_UTR
CATAGCAACCCTCTGCACAG+AGG 0.716883 4_2:+44947782 None:intergenic
TGAAATCAGCCCATTCTGAG+CGG 0.726689 4_2:+44948900 None:intergenic
AGAGCCGAAATGCTCCCGAG+TGG 0.728401 4_2:-44949771 Msa0601880:five_prime_UTR
ACTTGATGCTGAAACAACTG+TGG 0.757022 4_2:-44947516 Msa0601880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTGTTATATGTTTTAA+AGG + chr4_2:44947082-44947101 None:intergenic 10.0%
!!! AAAATGTACAAAAACATTTT+CGG + chr4_2:44946666-44946685 None:intergenic 15.0%
!!! TTATATGTTTTAAAGGTTAA+TGG + chr4_2:44947075-44947094 None:intergenic 15.0%
!!! TTAGATTTGTTTTGTTTTTT+TGG - chr4_2:44947663-44947682 Msa0601880:five_prime_UTR 15.0%
!!! ATATTAATGGATATTGTATT+TGG - chr4_2:44948207-44948226 Msa0601880:five_prime_UTR 15.0%
!!! ATTATTAATTTGTAAAGTGT+AGG - chr4_2:44949756-44949775 Msa0601880:five_prime_UTR 15.0%
!! TCAATAATTTATCAAAAGTA+AGG + chr4_2:44950776-44950795 None:intergenic 15.0%
!!! TGTAATTCTATTTCATTTTA+TGG - chr4_2:44951820-44951839 Msa0601880:five_prime_UTR 15.0%
!! TAATCAATGATAAATTTGAA+GGG - chr4_2:44952367-44952386 Msa0601880:five_prime_UTR 15.0%
!! GAATTAATCTTGTAAATTAT+TGG - chr4_2:44952468-44952487 Msa0601880:five_prime_UTR 15.0%
!! ATAGAATATGACAAGTTTAA+GGG + chr4_2:44947248-44947267 None:intergenic 20.0%
!! ATTGAATTCTAGCATTAAAT+TGG + chr4_2:44947982-44948001 None:intergenic 20.0%
!! AATATAGTAATCAATTGTAG+AGG + chr4_2:44948012-44948031 None:intergenic 20.0%
!! ACACAATAGAAAAAAGAATT+AGG + chr4_2:44948397-44948416 None:intergenic 20.0%
!! TTTCATATGAACTAAAATGA+AGG - chr4_2:44948675-44948694 Msa0601880:intron 20.0%
!!! TGATTTGTATATCAGTTTTT+TGG - chr4_2:44950017-44950036 Msa0601880:intron 20.0%
!! TATATTATCTTTGGTACAAA+TGG - chr4_2:44950848-44950867 Msa0601880:intron 20.0%
!! TAAACACATATGATCAATAT+AGG - chr4_2:44950924-44950943 Msa0601880:intron 20.0%
!! AATAGAGACAGAAAAATTAA+GGG + chr4_2:44951135-44951154 None:intergenic 20.0%
!!! ATGTTACTATATTCTGTTTT+AGG - chr4_2:44951256-44951275 Msa0601880:intron 20.0%
!!! TGTTACTATATTCTGTTTTA+GGG - chr4_2:44951257-44951276 Msa0601880:intron 20.0%
!!! AATTCTATTTCATTTTATGG+TGG - chr4_2:44951823-44951842 Msa0601880:five_prime_UTR 20.0%
!! CTAATCAATGATAAATTTGA+AGG - chr4_2:44952366-44952385 Msa0601880:five_prime_UTR 20.0%
!! AATCAATGATAAATTTGAAG+GGG - chr4_2:44952368-44952387 Msa0601880:five_prime_UTR 20.0%
!! AATCTAATTAAATGCAAACT+TGG + chr4_2:44952420-44952439 None:intergenic 20.0%
!! TTTACAAGATTAATTCAACT+TGG + chr4_2:44952464-44952483 None:intergenic 20.0%
! AAAAACCTTAATAAGCATGT+TGG + chr4_2:44946809-44946828 None:intergenic 25.0%
! CAAGATAAGTTTGAATGAAA+TGG + chr4_2:44946991-44947010 None:intergenic 25.0%
! ATGGAATCAATAAAAGAGAA+GGG + chr4_2:44947056-44947075 None:intergenic 25.0%
! AATGGAATCAATAAAAGAGA+AGG + chr4_2:44947057-44947076 None:intergenic 25.0%
! AAAGTTGAAGTGAAAAAAGA+AGG - chr4_2:44947155-44947174 Msa0601880:intron 25.0%
! AGAAAATGAACAAGAAAGTT+TGG + chr4_2:44947197-44947216 None:intergenic 25.0%
! GTTTAAGGGAAAATGAAAAT+GGG + chr4_2:44947234-44947253 None:intergenic 25.0%
! AGTTTAAGGGAAAATGAAAA+TGG + chr4_2:44947235-44947254 None:intergenic 25.0%
! GATAGAATATGACAAGTTTA+AGG + chr4_2:44947249-44947268 None:intergenic 25.0%
! TCAAGAAAAATGAAAGTTCT+TGG + chr4_2:44947316-44947335 None:intergenic 25.0%
!!! AAGAACTTTCATTTTTCTTG+AGG - chr4_2:44947315-44947334 Msa0601880:CDS 25.0%
! TTTATAAGTTTGAGCTTCAT+TGG - chr4_2:44947622-44947641 Msa0601880:five_prime_UTR 25.0%
!!! TTTTGGTGTTGAATTTTTGT+AGG - chr4_2:44947680-44947699 Msa0601880:five_prime_UTR 25.0%
!!! AGAATTGATTTTGACATGTT+TGG - chr4_2:44947934-44947953 Msa0601880:five_prime_UTR 25.0%
!!! TTGGTTTGTTAAATTGATTC+AGG + chr4_2:44948123-44948142 None:intergenic 25.0%
!!! GATTTTTTTTTCTGTCTTGA+AGG - chr4_2:44948368-44948387 Msa0601880:intron 25.0%
! TTCGTACTAAATTTATAGCA+AGG + chr4_2:44948539-44948558 None:intergenic 25.0%
!! GTATACTTTAGAGACTTTAT+TGG + chr4_2:44948600-44948619 None:intergenic 25.0%
!!! TTTTAGTCTTTACCGTTAAA+AGG - chr4_2:44948631-44948650 Msa0601880:intron 25.0%
!! TTACATCTTATTTGGAAGTA+TGG + chr4_2:44948965-44948984 None:intergenic 25.0%
! TCTGCAATCTGTTAAAAAAT+CGG + chr4_2:44949062-44949081 None:intergenic 25.0%
!!! AGTTTGTTGACTAATGTTAT+TGG - chr4_2:44949791-44949810 Msa0601880:five_prime_UTR 25.0%
!! AGAAGAGCTACTTAAATTTT+TGG + chr4_2:44950165-44950184 None:intergenic 25.0%
!! ATTTTCAACAGTTACAGTTT+TGG - chr4_2:44950276-44950295 Msa0601880:intron 25.0%
!! TTTTCAACAGTTACAGTTTT+GGG - chr4_2:44950277-44950296 Msa0601880:intron 25.0%
!! AATGAAGATTTAACTTCATC+AGG + chr4_2:44950662-44950681 None:intergenic 25.0%
! TATGTAAGAAGAGGTTAATA+GGG + chr4_2:44950806-44950825 None:intergenic 25.0%
! TTATGTAAGAAGAGGTTAAT+AGG + chr4_2:44950807-44950826 None:intergenic 25.0%
! ATAATATATACCGATAGATC+TGG + chr4_2:44950836-44950855 None:intergenic 25.0%
! CTATCGGTATATATTATCTT+TGG - chr4_2:44950839-44950858 Msa0601880:five_prime_UTR 25.0%
! CATACAAGAAATCATTTCAT+CGG + chr4_2:44950887-44950906 None:intergenic 25.0%
! CAATAGAGACAGAAAAATTA+AGG + chr4_2:44951136-44951155 None:intergenic 25.0%
! CCAAATAGTAACTGATTAAA+GGG + chr4_2:44951699-44951718 None:intergenic 25.0%
! CCTTTAATCAGTTACTATTT+GGG - chr4_2:44951697-44951716 Msa0601880:five_prime_UTR 25.0%
! CTTTAATCAGTTACTATTTG+GGG - chr4_2:44951698-44951717 Msa0601880:five_prime_UTR 25.0%
!! GATTAATGTGATTTTCTGTT+TGG - chr4_2:44951915-44951934 Msa0601880:five_prime_UTR 25.0%
! TAGCTTTCTCTTTCATAAAT+TGG - chr4_2:44952311-44952330 Msa0601880:five_prime_UTR 25.0%
AAAGAAAGGAATGAAGAAGA+AGG + chr4_2:44946776-44946795 None:intergenic 30.0%
CAGTATCAATCAAGAGAAAA+AGG + chr4_2:44946833-44946852 None:intergenic 30.0%
! TGTCTTTGTTGCTGTATTTT+TGG + chr4_2:44946876-44946895 None:intergenic 30.0%
GAAGAAGAAAAAAACCATCT+TGG - chr4_2:44947103-44947122 Msa0601880:intron 30.0%
CATATAGAAAGTAGTAGTAG+TGG - chr4_2:44947389-44947408 Msa0601880:intron 30.0%
ATTGATAAGCATCTAGATTC+AGG - chr4_2:44947419-44947438 Msa0601880:intron 30.0%
TTGATAAGCATCTAGATTCA+GGG - chr4_2:44947420-44947439 Msa0601880:intron 30.0%
TAGATTCAGGGAAATATGTT+AGG - chr4_2:44947432-44947451 Msa0601880:intron 30.0%
AATCAATTGTTGTCTTCTCA+TGG + chr4_2:44947519-44947538 None:intergenic 30.0%
! GTTTTCAATACCTTCGATTT+TGG + chr4_2:44947595-44947614 None:intergenic 30.0%
!! ATCGAAGGTATTGAAAACTT+TGG - chr4_2:44947597-44947616 Msa0601880:exon 30.0%
!! TGTCATAATTCTACTTTTCG+AGG - chr4_2:44947887-44947906 Msa0601880:five_prime_UTR 30.0%
GTAATCAATTGTAGAGGAAA+AGG + chr4_2:44948006-44948025 None:intergenic 30.0%
TCAATTCACTTTGACATGAA+CGG - chr4_2:44948049-44948068 Msa0601880:intron 30.0%
!!! CTTAGTGCATGTTTGTTTTT+TGG + chr4_2:44948170-44948189 None:intergenic 30.0%
AACAAACATGCACTAAGTTA+AGG - chr4_2:44948173-44948192 Msa0601880:intron 30.0%
ATCCATTAATATCAACTCCA+AGG + chr4_2:44948199-44948218 None:intergenic 30.0%
TCTTTACCGTTAAAAGGTTA+GGG - chr4_2:44948637-44948656 Msa0601880:intron 30.0%
GAAGGATTTGATATACTTGA+AGG - chr4_2:44948693-44948712 Msa0601880:intron 30.0%
! CCTTCATTTTCAAATCAACA+TGG + chr4_2:44948785-44948804 None:intergenic 30.0%
!! CCATGTTGATTTGAAAATGA+AGG - chr4_2:44948782-44948801 Msa0601880:five_prime_UTR 30.0%
! TGTTAGTTTAGAACCTACAA+AGG - chr4_2:44948933-44948952 Msa0601880:five_prime_UTR 30.0%
AGTATGGAATTTACCTTTGT+AGG + chr4_2:44948949-44948968 None:intergenic 30.0%
! CCACACTTTTACATCTTATT+TGG + chr4_2:44948973-44948992 None:intergenic 30.0%
CCAAATAAGATGTAAAAGTG+TGG - chr4_2:44948970-44948989 Msa0601880:intron 30.0%
CTGCAATCTGTTAAAAAATC+GGG + chr4_2:44949061-44949080 None:intergenic 30.0%
TCCTTAAAGATCGTTTATCT+TGG - chr4_2:44949084-44949103 Msa0601880:five_prime_UTR 30.0%
ACCAAGATAAACGATCTTTA+AGG + chr4_2:44949088-44949107 None:intergenic 30.0%
GAAACATTGTGAAAACTTCT+AGG + chr4_2:44949127-44949146 None:intergenic 30.0%
TCTTAGATACACTACAACTT+TGG - chr4_2:44949307-44949326 Msa0601880:intron 30.0%
ATCTCGTGCATAGTAATAAA+AGG - chr4_2:44949363-44949382 Msa0601880:five_prime_UTR 30.0%
!!! CATTTTGATTCCACTTTTGA+AGG - chr4_2:44949412-44949431 Msa0601880:five_prime_UTR 30.0%
GTCTTACTTCAAGATTTAAG+TGG + chr4_2:44949577-44949596 None:intergenic 30.0%
ATATATTAGGCAAATAGCTC+AGG - chr4_2:44949837-44949856 Msa0601880:five_prime_UTR 30.0%
AGGAAACAAATCATTTCATG+TGG + chr4_2:44949943-44949962 None:intergenic 30.0%
!! GAAATGATTTGTTTCCTTGA+AGG - chr4_2:44949946-44949965 Msa0601880:intron 30.0%
AATCAAATAATCATGCCTCT+GGG - chr4_2:44950474-44950493 Msa0601880:intron 30.0%
! CAAAATGTCTTTAAGTGTTG+TGG - chr4_2:44950555-44950574 Msa0601880:intron 30.0%
GACTCTACATAACATGTTAA+TGG + chr4_2:44950584-44950603 None:intergenic 30.0%
!! AAGAAGATGCTTTTGTTTCT+AGG - chr4_2:44950726-44950745 Msa0601880:intron 30.0%
!!! AGAAGATGCTTTTGTTTCTA+GGG - chr4_2:44950727-44950746 Msa0601880:intron 30.0%
TGATTTCTTGTATGTAGTTG+TGG - chr4_2:44950893-44950912 Msa0601880:intron 30.0%
ATCAATATAGGTATGTACTG+AGG - chr4_2:44950936-44950955 Msa0601880:intron 30.0%
! TTCTTTTTGCAGATATGTAG+TGG - chr4_2:44950972-44950991 Msa0601880:five_prime_UTR 30.0%
! TCTTTTTGCAGATATGTAGT+GGG - chr4_2:44950973-44950992 Msa0601880:five_prime_UTR 30.0%
!!! CAACTGGTTTTGAATCTAAT+GGG + chr4_2:44951103-44951122 None:intergenic 30.0%
!!! TCAACTGGTTTTGAATCTAA+TGG + chr4_2:44951104-44951123 None:intergenic 30.0%
GCAAGATAATGTTGTAATCA+TGG - chr4_2:44951439-44951458 Msa0601880:five_prime_UTR 30.0%
CCCTTTAATCAGTTACTATT+TGG - chr4_2:44951696-44951715 Msa0601880:five_prime_UTR 30.0%
CCCAAATAGTAACTGATTAA+AGG + chr4_2:44951700-44951719 None:intergenic 30.0%
! GATTTTATGCTGTTCATTGA+AGG - chr4_2:44951792-44951811 Msa0601880:five_prime_UTR 30.0%
ACATTAATCTCGCGTTATAA+AGG + chr4_2:44951904-44951923 None:intergenic 30.0%
GATAAAATATTTGACGAGTC+TGG - chr4_2:44952030-44952049 Msa0601880:five_prime_UTR 30.0%
! GCATTATTCATGTTAAGTTG+TGG + chr4_2:44952106-44952125 None:intergenic 30.0%
AAGTTGTGTACACTTTGATT+AGG - chr4_2:44952174-44952193 Msa0601880:five_prime_UTR 30.0%
AGTTGTGTACACTTTGATTA+GGG - chr4_2:44952175-44952194 Msa0601880:five_prime_UTR 30.0%
TTGATTAGTAGCATTCACAT+TGG + chr4_2:44952354-44952373 None:intergenic 30.0%
AAATTTGAAGGGGTAAAATC+AGG - chr4_2:44952378-44952397 Msa0601880:five_prime_UTR 30.0%
! TAGTATCTGTCTAGTTTGAA+AGG - chr4_2:44952546-44952565 Msa0601880:five_prime_UTR 30.0%
! CTTAATAAGCATGTTGGTGA+TGG + chr4_2:44946803-44946822 None:intergenic 35.0%
CATCACCAACATGCTTATTA+AGG - chr4_2:44946801-44946820 Msa0601880:three_prime_UTR 35.0%
ACAAGACTATATTCCTTCCT+AGG - chr4_2:44946893-44946912 Msa0601880:three_prime_UTR 35.0%
GAATCAATAAAAGAGAAGGG+TGG + chr4_2:44947053-44947072 None:intergenic 35.0%
AAAAACCATCTTGGTTCACA+AGG - chr4_2:44947112-44947131 Msa0601880:intron 35.0%
ATAGAAAGTAGTAGTAGTGG+TGG - chr4_2:44947392-44947411 Msa0601880:intron 35.0%
! TACTGAACAAGTTGAAGCAT+TGG - chr4_2:44947460-44947479 Msa0601880:intron 35.0%
!! AACAAGTTGAAGCATTGGAA+AGG - chr4_2:44947465-44947484 Msa0601880:intron 35.0%
!! ACAAGTTGAAGCATTGGAAA+GGG - chr4_2:44947466-44947485 Msa0601880:intron 35.0%
GGTTCAATGTTGGAAAGAAT+AGG + chr4_2:44947551-44947570 None:intergenic 35.0%
! GATCTGTTTAGGTTCAATGT+TGG + chr4_2:44947561-44947580 None:intergenic 35.0%
CATTGAACCTAAACAGATCA+AGG - chr4_2:44947562-44947581 Msa0601880:CDS 35.0%
AACCTAAACAGATCAAGGTT+TGG - chr4_2:44947567-44947586 Msa0601880:CDS 35.0%
AACCAAACCTTGATCTGTTT+AGG + chr4_2:44947572-44947591 None:intergenic 35.0%
TAGAGAGAAGCAAAGAAAAG+AGG - chr4_2:44947705-44947724 Msa0601880:five_prime_UTR 35.0%
TGCAATGAACAAGTTGTTGA+TGG - chr4_2:44947762-44947781 Msa0601880:five_prime_UTR 35.0%
! AATGAACAAGTTGTTGATGG+AGG - chr4_2:44947765-44947784 Msa0601880:five_prime_UTR 35.0%
! TGTTGATGGAGGAAAATGAT+AGG - chr4_2:44947776-44947795 Msa0601880:five_prime_UTR 35.0%
! TGTGTGAGAATGGATTTATG+AGG - chr4_2:44947824-44947843 Msa0601880:five_prime_UTR 35.0%
!! CATAATTCTACTTTTCGAGG+AGG - chr4_2:44947890-44947909 Msa0601880:five_prime_UTR 35.0%
TACTGATGCAAGTTGTGATT+CGG - chr4_2:44948263-44948282 Msa0601880:five_prime_UTR 35.0%
TTTGACAGAGTTCCTTTCAA+AGG - chr4_2:44948453-44948472 Msa0601880:intron 35.0%
! GGAGAGAGAGTGATATTTTA+GGG + chr4_2:44948579-44948598 None:intergenic 35.0%
! TGGAGAGAGAGTGATATTTT+AGG + chr4_2:44948580-44948599 None:intergenic 35.0%
!! GTCTCTAAAGTATACGACAT+CGG - chr4_2:44948605-44948624 Msa0601880:intron 35.0%
GTCTTTACCGTTAAAAGGTT+AGG - chr4_2:44948636-44948655 Msa0601880:intron 35.0%
! GTTAGTCCCTAACCTTTTAA+CGG + chr4_2:44948646-44948665 None:intergenic 35.0%
TTTGATGAACTCAACTTGCA+TGG + chr4_2:44949020-44949039 None:intergenic 35.0%
CTGTGTGTAAATAAGCTCAA+TGG + chr4_2:44949168-44949187 None:intergenic 35.0%
CATTGAGCTTATTTACACAC+AGG - chr4_2:44949166-44949185 Msa0601880:five_prime_UTR 35.0%
AGGTATGGATAAATCAACAC+AGG + chr4_2:44949217-44949236 None:intergenic 35.0%
CAAATCTGAAGGTTACTCAA+AGG + chr4_2:44949237-44949256 None:intergenic 35.0%
TATGTCTGTAGCAAATCTGA+AGG + chr4_2:44949248-44949267 None:intergenic 35.0%
TACACTACAACTTTGGACAA+TGG - chr4_2:44949314-44949333 Msa0601880:intron 35.0%
GATTTAAGTGGTCTACAATG+TGG + chr4_2:44949565-44949584 None:intergenic 35.0%
ACCACTTTATGAATCACCAA+AGG - chr4_2:44949696-44949715 Msa0601880:intron 35.0%
! ACCTTTGGTGATTCATAAAG+TGG + chr4_2:44949700-44949719 None:intergenic 35.0%
ACTTTATGAATCACCAAAGG+TGG - chr4_2:44949699-44949718 Msa0601880:intron 35.0%
GGCTCAAAAAATGACAATTG+CGG - chr4_2:44949723-44949742 Msa0601880:five_prime_UTR 35.0%
!! TTATTGGTGCCTTTTGTGAT+AGG - chr4_2:44949807-44949826 Msa0601880:five_prime_UTR 35.0%
GATAGGCACTTCGATATATT+AGG - chr4_2:44949824-44949843 Msa0601880:five_prime_UTR 35.0%
! GTAAATGGATTCAGTGATGA+TGG - chr4_2:44950083-44950102 Msa0601880:intron 35.0%
CAATCAAATAATCATGCCTC+TGG - chr4_2:44950473-44950492 Msa0601880:intron 35.0%
ATCAAATAATCATGCCTCTG+GGG - chr4_2:44950475-44950494 Msa0601880:intron 35.0%
GAACACAATTGAACATGAAG+AGG - chr4_2:44950497-44950516 Msa0601880:intron 35.0%
TGCAGATGCTTGAAGTTATT+AGG - chr4_2:44950681-44950700 Msa0601880:intron 35.0%
CTTGAAGTTATTAGGCTTGA+AGG - chr4_2:44950689-44950708 Msa0601880:intron 35.0%
TCTGGGAACATTTCATCAAT+TGG + chr4_2:44951044-44951063 None:intergenic 35.0%
TTGAATCTAATGGGATGATG+CGG + chr4_2:44951094-44951113 None:intergenic 35.0%
TTAAGGGAACAAAACTCAAC+TGG + chr4_2:44951119-44951138 None:intergenic 35.0%
TCATCACATTCATCTGCTAT+AGG + chr4_2:44951205-44951224 None:intergenic 35.0%
!!! TCTGTTTTAGGGTGATAAGA+AGG - chr4_2:44951268-44951287 Msa0601880:intron 35.0%
CAATCACACTACGAACATAT+TGG + chr4_2:44951469-44951488 None:intergenic 35.0%
! AATGGATTTGCCAGAGTTAT+AGG - chr4_2:44951591-44951610 Msa0601880:intron 35.0%
TTGAGATCAGATTCTCTTGT+TGG - chr4_2:44951730-44951749 Msa0601880:five_prime_UTR 35.0%
CGTATGTTTAGAAAGGAAGT+TGG - chr4_2:44951857-44951876 Msa0601880:five_prime_UTR 35.0%
TGTTTAGAAAGGAAGTTGGA+AGG - chr4_2:44951861-44951880 Msa0601880:five_prime_UTR 35.0%
GTTTAGAAAGGAAGTTGGAA+GGG - chr4_2:44951862-44951881 Msa0601880:five_prime_UTR 35.0%
! AGTTGGAAGGGTTGTAATTT+TGG - chr4_2:44951874-44951893 Msa0601880:five_prime_UTR 35.0%
! TGATTTGCAAATACGAACAC+CGG + chr4_2:44951955-44951974 None:intergenic 35.0%
TTCGTATTTGCAAATCAAGC+TGG - chr4_2:44951958-44951977 Msa0601880:five_prime_UTR 35.0%
!! GAGTTGTTTCTAACATGTCA+AGG + chr4_2:44951984-44952003 None:intergenic 35.0%
AGCTTTACAAGACATCACAT+TGG - chr4_2:44952008-44952027 Msa0601880:five_prime_UTR 35.0%
! TTTTGCCAAGTTAATGCAAC+AGG - chr4_2:44952074-44952093 Msa0601880:five_prime_UTR 35.0%
AATCACCTGTTGCATTAACT+TGG + chr4_2:44952082-44952101 None:intergenic 35.0%
GTTGTGTACACTTTGATTAG+GGG - chr4_2:44952176-44952195 Msa0601880:five_prime_UTR 35.0%
CAATGAACAGTGTTATCTTC+TGG + chr4_2:44952289-44952308 None:intergenic 35.0%
AGCTCAGATGTCAAGAAACA+TGG + chr4_2:44946716-44946735 None:intergenic 40.0%
!! TTGGTGATGGAGGAAAAGAA+AGG + chr4_2:44946790-44946809 None:intergenic 40.0%
!! AATAAGCATGTTGGTGATGG+AGG + chr4_2:44946800-44946819 None:intergenic 40.0%
AAGTTGTCTTTGTCCTAGGA+AGG + chr4_2:44946909-44946928 None:intergenic 40.0%
AGTGAAGTTGTCTTTGTCCT+AGG + chr4_2:44946913-44946932 None:intergenic 40.0%
GAAATGGAGCTTGAGTTAGA+AGG + chr4_2:44946975-44946994 None:intergenic 40.0%
CATTACCTTGTGAACCAAGA+TGG + chr4_2:44947120-44947139 None:intergenic 40.0%
CATCTTGGTTCACAAGGTAA+TGG - chr4_2:44947118-44947137 Msa0601880:intron 40.0%
TTGAGGTTAGTGTGTTGTGT+GGG - chr4_2:44947332-44947351 Msa0601880:intron 40.0%
AAGAAACATGGCTATGGCTA+TGG - chr4_2:44947355-44947374 Msa0601880:intron 40.0%
TGTTGTCTTCTCATGGAACT+AGG + chr4_2:44947512-44947531 None:intergenic 40.0%
! AGGTTTGGTTCCAAAATCGA+AGG - chr4_2:44947582-44947601 Msa0601880:CDS 40.0%
AGCAAAGAAAAGAGGCTTCA+AGG - chr4_2:44947713-44947732 Msa0601880:five_prime_UTR 40.0%
CAAGGCTTCAAACTGTGAAT+AGG - chr4_2:44947731-44947750 Msa0601880:five_prime_UTR 40.0%
TTGCATACTGTAAGTGTGTG+AGG - chr4_2:44947853-44947872 Msa0601880:five_prime_UTR 40.0%
!! GGCCTTGGAGTTGATATTAA+TGG - chr4_2:44948194-44948213 Msa0601880:five_prime_UTR 40.0%
GCATCTCTCTTAGAATTCTG+AGG + chr4_2:44948300-44948319 None:intergenic 40.0%
! AACCCTGCTGGGTAATTTTT+AGG - chr4_2:44948324-44948343 Msa0601880:intron 40.0%
AGCCTAAAAATTACCCAGCA+GGG + chr4_2:44948329-44948348 None:intergenic 40.0%
AAGCCTAAAAATTACCCAGC+AGG + chr4_2:44948330-44948349 None:intergenic 40.0%
TTGCAGACTCCTATCAATTG+CGG - chr4_2:44948423-44948442 Msa0601880:intron 40.0%
! TACAGGAACTGCTGTTGATT+GGG - chr4_2:44948477-44948496 Msa0601880:intron 40.0%
AAATAAGAGACCTTCATCCC+AGG + chr4_2:44948511-44948530 None:intergenic 40.0%
AAGGTTAGGGACTAACATGA+CGG - chr4_2:44948650-44948669 Msa0601880:intron 40.0%
AAATCAAACTCTCTCTCGAG+TGG + chr4_2:44948751-44948770 None:intergenic 40.0%
GCGATTTCACAAAGTTGTAG+TGG - chr4_2:44948886-44948905 Msa0601880:five_prime_UTR 40.0%
! TTCACAAAGTTGTAGTGGAG+TGG - chr4_2:44948891-44948910 Msa0601880:five_prime_UTR 40.0%
! GTTTTCACAATGTTTCCTGC+CGG - chr4_2:44949131-44949150 Msa0601880:five_prime_UTR 40.0%
CTGAAGGTTACTCAAAGGTA+TGG + chr4_2:44949232-44949251 None:intergenic 40.0%
ATCTAAGAGTCCAGAAATCC+CGG + chr4_2:44949295-44949314 None:intergenic 40.0%
CTCTCACAAACCTTCAAAAG+TGG + chr4_2:44949425-44949444 None:intergenic 40.0%
!! CACTTTTGAAGGTTTGTGAG+AGG - chr4_2:44949423-44949442 Msa0601880:five_prime_UTR 40.0%
! TACTTGATTCGACCATGTGA+TGG - chr4_2:44949524-44949543 Msa0601880:intron 40.0%
TTATTCTTGTCTTCTAGCCG+TGG - chr4_2:44949653-44949672 Msa0601880:intron 40.0%
TTATGAATCACCAAAGGTGG+TGG - chr4_2:44949702-44949721 Msa0601880:intron 40.0%
!!! ATTTTTTGAGCCACCACCTT+TGG + chr4_2:44949715-44949734 None:intergenic 40.0%
! ATCGAAGTGCCTATCACAAA+AGG + chr4_2:44949819-44949838 None:intergenic 40.0%
TCCTTGAAGGTCATATCTGT+CGG - chr4_2:44949959-44949978 Msa0601880:five_prime_UTR 40.0%
CTGATGTATTACATCTGCAG+AGG - chr4_2:44950047-44950066 Msa0601880:intron 40.0%
!! ATGGATTCAGTGATGATGGT+TGG - chr4_2:44950087-44950106 Msa0601880:intron 40.0%
TGGTCTATACTGAACTGTGA+TGG - chr4_2:44950107-44950126 Msa0601880:five_prime_UTR 40.0%
AATTCCTCCAAGCAATGTGA+GGG + chr4_2:44950201-44950220 None:intergenic 40.0%
TGAGTCTTGAGTCAATGTCA+CGG - chr4_2:44950252-44950271 Msa0601880:intron 40.0%
!!! GGTTTTGGTTCGCTTTCTAA+GGG - chr4_2:44950344-44950363 Msa0601880:five_prime_UTR 40.0%
TGATTGCCAGTGAATCTTGT+AGG + chr4_2:44950459-44950478 None:intergenic 40.0%
TAGGGATATTCACCTGTTAC+AGG - chr4_2:44950745-44950764 Msa0601880:intron 40.0%
! AGTAAGGCATTACCTGTAAC+AGG + chr4_2:44950760-44950779 None:intergenic 40.0%
ATAAGCTGAGCCAGATCTAT+CGG - chr4_2:44950823-44950842 Msa0601880:five_prime_UTR 40.0%
GCAGATGAATGTGATGACTT+TGG - chr4_2:44951208-44951227 Msa0601880:intron 40.0%
AGGCAATAGTCAACACTGAT+CGG + chr4_2:44951394-44951413 None:intergenic 40.0%
CTTGCATAGTGCTGTCAAAT+GGG + chr4_2:44951424-44951443 None:intergenic 40.0%
TCTTGCATAGTGCTGTCAAA+TGG + chr4_2:44951425-44951444 None:intergenic 40.0%
AAGCAGTTACACTAGCTCAA+TGG - chr4_2:44951573-44951592 Msa0601880:intron 40.0%
ACTTGATGCTGAAACAACTG+TGG - chr4_2:44951755-44951774 Msa0601880:five_prime_UTR 40.0%
! ATTTCATTTTATGGTGGCCG+AGG - chr4_2:44951829-44951848 Msa0601880:five_prime_UTR 40.0%
TCTAAACATACGAACCACCT+CGG + chr4_2:44951849-44951868 None:intergenic 40.0%
GGTGGTTCGTATGTTTAGAA+AGG - chr4_2:44951850-44951869 Msa0601880:five_prime_UTR 40.0%
GAGTGAAGTTGAGACTTGTA+TGG - chr4_2:44952499-44952518 Msa0601880:five_prime_UTR 40.0%
TGGAGCTTGAGTTAGAAGGA+AGG + chr4_2:44946971-44946990 None:intergenic 45.0%
CTTGAGGTTAGTGTGTTGTG+TGG - chr4_2:44947331-44947350 Msa0601880:intron 45.0%
GTGTTGTGTGGGAAGAAACA+TGG - chr4_2:44947343-44947362 Msa0601880:intron 45.0%
TGTGGGAAGAAACATGGCTA+TGG - chr4_2:44947349-44947368 Msa0601880:intron 45.0%
CTTCTCATGGAACTAGGCTT+AGG + chr4_2:44947506-44947525 None:intergenic 45.0%
TCACAGCTTGTGTGTGAGAA+TGG - chr4_2:44947814-44947833 Msa0601880:five_prime_UTR 45.0%
CATGCACTAAGTTAAGGCCT+TGG - chr4_2:44948179-44948198 Msa0601880:five_prime_UTR 45.0%
! GCATCAGTATTTGCTGCTGA+TGG + chr4_2:44948252-44948271 None:intergenic 45.0%
AAGTCTCCTCCGCAATTGAT+AGG + chr4_2:44948435-44948454 None:intergenic 45.0%
GAGTTCCTTTCAAAGGCTAC+AGG - chr4_2:44948460-44948479 Msa0601880:intron 45.0%
CAGTTCCTGTAGCCTTTGAA+AGG + chr4_2:44948468-44948487 None:intergenic 45.0%
CTACAGGAACTGCTGTTGAT+TGG - chr4_2:44948476-44948495 Msa0601880:intron 45.0%
TGTTATTCTCTTTGCCAGCC+TGG - chr4_2:44948841-44948860 Msa0601880:five_prime_UTR 45.0%
TATCTTGGTTTCGCGAGTGT+CGG - chr4_2:44949099-44949118 Msa0601880:five_prime_UTR 45.0%
ACAATGTTTCCTGCCGGAAA+TGG - chr4_2:44949137-44949156 Msa0601880:five_prime_UTR 45.0%
CTCAATGGTTCCTCCATTTC+CGG + chr4_2:44949153-44949172 None:intergenic 45.0%
TCTAAGAGTCCAGAAATCCC+GGG + chr4_2:44949294-44949313 None:intergenic 45.0%
TTTGGACAATGGCAGTCTTG+TGG - chr4_2:44949325-44949344 Msa0601880:intron 45.0%
GAGCAGCAGCAGTTGAATTA+GGG + chr4_2:44949472-44949491 None:intergenic 45.0%
TGAGCAGCAGCAGTTGAATT+AGG + chr4_2:44949473-44949492 None:intergenic 45.0%
! TTGATTCGACCATGTGATGG+TGG - chr4_2:44949527-44949546 Msa0601880:intron 45.0%
ATTGAACCTCCACCATCACA+TGG + chr4_2:44949539-44949558 None:intergenic 45.0%
TAAAGTGGTCGTAGCACTTC+TGG + chr4_2:44949685-44949704 None:intergenic 45.0%
CAAATAGCTCAGGAATCGAG+TGG - chr4_2:44949847-44949866 Msa0601880:intron 45.0%
TCGAGTGGTGAAGTGGTATA+CGG - chr4_2:44949862-44949881 Msa0601880:intron 45.0%
GGTGAAGTGGTATACGGATT+AGG - chr4_2:44949868-44949887 Msa0601880:intron 45.0%
CTGAATGTTCGCAAAACAGC+AGG + chr4_2:44949901-44949920 None:intergenic 45.0%
CATTCAGCCAAAGATTGAGC+AGG - chr4_2:44949914-44949933 Msa0601880:intron 45.0%
GGCTTCAATGACGCTGTAAA+TGG - chr4_2:44950068-44950087 Msa0601880:intron 45.0%
GAATTCCTCCAAGCAATGTG+AGG + chr4_2:44950202-44950221 None:intergenic 45.0%
!!! CGGTTTTGGTTCGCTTTCTA+AGG - chr4_2:44950343-44950362 Msa0601880:five_prime_UTR 45.0%
TGAAATCAGCCCATTCTGAG+CGG + chr4_2:44950374-44950393 None:intergenic 45.0%
CAGGAACCTATACCTATCCA+GGG - chr4_2:44950427-44950446 Msa0601880:intron 45.0%
ATGAGGCCTACAAGATTCAC+TGG - chr4_2:44950450-44950469 Msa0601880:intron 45.0%
TGTTCAATTGTGTTCCCCAG+AGG + chr4_2:44950492-44950511 None:intergenic 45.0%
CATCTTCTTGAGCAAGAGAG+TGG + chr4_2:44950715-44950734 None:intergenic 45.0%
GGCTCAGCTTATGTAAGAAG+AGG + chr4_2:44950815-44950834 None:intergenic 45.0%
AGGATGCCGTGAATACAAAC+CGG - chr4_2:44951288-44951307 Msa0601880:intron 45.0%
! CAGTGTCCGGTTTGTATTCA+CGG + chr4_2:44951297-44951316 None:intergenic 45.0%
GGCAATAGTCAACACTGATC+GGG + chr4_2:44951393-44951412 None:intergenic 45.0%
GCTGTCAAATGGGAACTGAA+AGG + chr4_2:44951414-44951433 None:intergenic 45.0%
ACCAACAGCTGGGTTTATAC+CGG + chr4_2:44951528-44951547 None:intergenic 45.0%
AAAGTTTGGCACCAACAGCT+GGG + chr4_2:44951538-44951557 None:intergenic 45.0%
TGGAGAACCAGGAGAAAGTT+TGG + chr4_2:44951552-44951571 None:intergenic 45.0%
TGAGCTAGTGTAACTGCTTC+TGG + chr4_2:44951572-44951591 None:intergenic 45.0%
CGTAGACTTGCCTATAACTC+TGG + chr4_2:44951604-44951623 None:intergenic 45.0%
AACAGCATAAAATCGCGTCC+TGG + chr4_2:44951786-44951805 None:intergenic 45.0%
!! AAAATTTATTATAAATGAAT+TGG + chr4_2:44948142-44948161 None:intergenic 5.0%
AGAGATGCTACTAACCCTGC+TGG - chr4_2:44948312-44948331 Msa0601880:intron 50.0%
GAGATGCTACTAACCCTGCT+GGG - chr4_2:44948313-44948332 Msa0601880:intron 50.0%
CAGACTCCTATCAATTGCGG+AGG - chr4_2:44948426-44948445 Msa0601880:intron 50.0%
TTGATTGGGTCCAGATGCCT+GGG - chr4_2:44948491-44948510 Msa0601880:intron 50.0%
GCAAAGATCCCAACCGAATC+CGG + chr4_2:44948868-44948887 None:intergenic 50.0%
ATGTTTCCTGCCGGAAATGG+AGG - chr4_2:44949140-44949159 Msa0601880:five_prime_UTR 50.0%
GTCGAATCAAGTAGCCACTC+GGG + chr4_2:44949517-44949536 None:intergenic 50.0%
GGTCGAATCAAGTAGCCACT+CGG + chr4_2:44949518-44949537 None:intergenic 50.0%
!! ATTCGACCATGTGATGGTGG+AGG - chr4_2:44949530-44949549 Msa0601880:intron 50.0%
TCAGGAATCGAGTGGTGAAG+TGG - chr4_2:44949855-44949874 Msa0601880:intron 50.0%
GTGGCTACCTGCTCAATCTT+TGG + chr4_2:44949924-44949943 None:intergenic 50.0%
GCCGACAGATATGACCTTCA+AGG + chr4_2:44949963-44949982 None:intergenic 50.0%
GTCATATCTGTCGGCAGTTC+TGG - chr4_2:44949968-44949987 Msa0601880:five_prime_UTR 50.0%
! ACTGAACTGTGATGGTGCTG+AGG - chr4_2:44950115-44950134 Msa0601880:five_prime_UTR 50.0%
AGCAATGTGAGGGAACTTGC+TGG + chr4_2:44950191-44950210 None:intergenic 50.0%
GCAAGTTCCCTCACATTGCT+TGG - chr4_2:44950191-44950210 Msa0601880:five_prime_UTR 50.0%
AGTTCCCTCACATTGCTTGG+AGG - chr4_2:44950194-44950213 Msa0601880:five_prime_UTR 50.0%
AGAAAGCGAACCAAAACCGC+AGG + chr4_2:44950342-44950361 None:intergenic 50.0%
TCCTGCTTTCAGTGATGCAG+CGG + chr4_2:44950412-44950431 None:intergenic 50.0%
GCAGGAACCTATACCTATCC+AGG - chr4_2:44950426-44950445 Msa0601880:intron 50.0%
CCTCATCCCTGGATAGGTAT+AGG + chr4_2:44950436-44950455 None:intergenic 50.0%
CCTATACCTATCCAGGGATG+AGG - chr4_2:44950433-44950452 Msa0601880:intron 50.0%
AATCTTGTAGGCCTCATCCC+TGG + chr4_2:44950447-44950466 None:intergenic 50.0%
GGACTGATGAGAACGCTGTT+GGG - chr4_2:44950994-44951013 Msa0601880:five_prime_UTR 50.0%
GTTCCCAGATGATGCTCCAT+TGG - chr4_2:44951055-44951074 Msa0601880:intron 50.0%
! GCACCAATGGAGCATCATCT+GGG + chr4_2:44951061-44951080 None:intergenic 50.0%
CGTGAATACAAACCGGACAC+TGG - chr4_2:44951295-44951314 Msa0601880:intron 50.0%
CTGACGTCAAATCCAGTGTC+CGG + chr4_2:44951310-44951329 None:intergenic 50.0%
GTGAACCCAACGACAACTCA+CGG - chr4_2:44951338-44951357 Msa0601880:intron 50.0%
TGTGATTGCCTCTGTGCAGA+GGG - chr4_2:44951481-44951500 Msa0601880:five_prime_UTR 50.0%
!! GCTATGGCTATTTCTCCGTC+CGG - chr4_2:44951506-44951525 Msa0601880:five_prime_UTR 50.0%
ACAGCTGGGTTTATACCGGA+CGG + chr4_2:44951524-44951543 None:intergenic 50.0%
TCCGGTATAAACCCAGCTGT+TGG - chr4_2:44951524-44951543 Msa0601880:five_prime_UTR 50.0%
GAAAGTTTGGCACCAACAGC+TGG + chr4_2:44951539-44951558 None:intergenic 50.0%
!! GTTGGTGCCAAACTTTCTCC+TGG - chr4_2:44951542-44951561 Msa0601880:five_prime_UTR 50.0%
! GTAACTGCTTCTGGAGAACC+AGG + chr4_2:44951563-44951582 None:intergenic 50.0%
GAAACAACTGTGGCATCACC+AGG - chr4_2:44951765-44951784 Msa0601880:five_prime_UTR 50.0%
! TCATTTTATGGTGGCCGAGG+TGG - chr4_2:44951832-44951851 Msa0601880:five_prime_UTR 50.0%
TTTGGTATTGCAGTCGCAGC+CGG - chr4_2:44951933-44951952 Msa0601880:five_prime_UTR 50.0%
ATTTGACGAGTCTGGTCGCA+AGG - chr4_2:44952038-44952057 Msa0601880:five_prime_UTR 50.0%
! GGTTTGCTTATCTGCCAGCT+GGG - chr4_2:44952197-44952216 Msa0601880:five_prime_UTR 50.0%
TGGGATCTGCATGTCGACAA+TGG - chr4_2:44952216-44952235 Msa0601880:five_prime_UTR 50.0%
GGGATCTGCATGTCGACAAT+GGG - chr4_2:44952217-44952236 Msa0601880:five_prime_UTR 50.0%
GGATCTGCATGTCGACAATG+GGG - chr4_2:44952218-44952237 Msa0601880:five_prime_UTR 50.0%
CGTACGAGCAAGCTATTGCA+TGG - chr4_2:44952251-44952270 Msa0601880:five_prime_UTR 50.0%
CATGGCTATGGCTATGGCTG+TGG - chr4_2:44947361-44947380 Msa0601880:intron 55.0%
GTTGATTGGGTCCAGATGCC+TGG - chr4_2:44948490-44948509 Msa0601880:intron 55.0%
AGACCTTCATCCCAGGCATC+TGG + chr4_2:44948504-44948523 None:intergenic 55.0%
TTCTCTTTGCCAGCCTGGTC+CGG - chr4_2:44948846-44948865 Msa0601880:five_prime_UTR 55.0%
ATGGTTCCTCCATTTCCGGC+AGG + chr4_2:44949149-44949168 None:intergenic 55.0%
GTTTGTGAGAGGTCCCTGTC+TGG - chr4_2:44949434-44949453 Msa0601880:five_prime_UTR 55.0%
!! GTAGCCACTCGGGAGCATTT+CGG + chr4_2:44949507-44949526 None:intergenic 55.0%
AGCACTTCTGGCACACTCCA+CGG + chr4_2:44949673-44949692 None:intergenic 55.0%
CTTGCAGAACGTTCCTCCTG+CGG - chr4_2:44950323-44950342 Msa0601880:intron 55.0%
! GAACGTTCCTCCTGCGGTTT+TGG - chr4_2:44950329-44950348 Msa0601880:intron 55.0%
AAGCGAACCAAAACCGCAGG+AGG + chr4_2:44950339-44950358 None:intergenic 55.0%
!! TAAGGGAGCACCGCTCAGAA+TGG - chr4_2:44950361-44950380 Msa0601880:five_prime_UTR 55.0%
!! AAGGGAGCACCGCTCAGAAT+GGG - chr4_2:44950362-44950381 Msa0601880:five_prime_UTR 55.0%
TCCGCTGCATCACTGAAAGC+AGG - chr4_2:44950408-44950427 Msa0601880:five_prime_UTR 55.0%
TGTAGGCCTCATCCCTGGAT+AGG + chr4_2:44950442-44950461 None:intergenic 55.0%
GGGACTGATGAGAACGCTGT+TGG - chr4_2:44950993-44951012 Msa0601880:five_prime_UTR 55.0%
! GGCACCAATGGAGCATCATC+TGG + chr4_2:44951062-44951081 None:intergenic 55.0%
! GATGCTCCATTGGTGCCTTC+TGG - chr4_2:44951065-44951084 Msa0601880:intron 55.0%
!! CGGAAACCAGAAGGCACCAA+TGG + chr4_2:44951074-44951093 None:intergenic 55.0%
GGGATGATGCGGAAACCAGA+AGG + chr4_2:44951083-44951102 None:intergenic 55.0%
CGGACACTGGATTTGACGTC+AGG - chr4_2:44951308-44951327 Msa0601880:intron 55.0%
CACTGCCGTGAGTTGTCGTT+GGG + chr4_2:44951346-44951365 None:intergenic 55.0%
GTGTGATTGCCTCTGTGCAG+AGG - chr4_2:44951480-44951499 Msa0601880:five_prime_UTR 55.0%
CATAGCAACCCTCTGCACAG+AGG + chr4_2:44951492-44951511 None:intergenic 55.0%
CTCTGTGCAGAGGGTTGCTA+TGG - chr4_2:44951490-44951509 Msa0601880:five_prime_UTR 55.0%
! GGGTTTGCTTATCTGCCAGC+TGG - chr4_2:44952196-44952215 Msa0601880:five_prime_UTR 55.0%
TCTGCATGTCGACAATGGGG+CGG - chr4_2:44952221-44952240 Msa0601880:five_prime_UTR 55.0%
GGTCCAGATGCCTGGGATGA+AGG - chr4_2:44948498-44948517 Msa0601880:intron 60.0%
TTGCCAGCCTGGTCCGGATT+CGG - chr4_2:44948852-44948871 Msa0601880:five_prime_UTR 60.0%
! AGCCTGGTCCGGATTCGGTT+GGG - chr4_2:44948857-44948876 Msa0601880:five_prime_UTR 60.0%
ATCCCAACCGAATCCGGACC+AGG + chr4_2:44948862-44948881 None:intergenic 60.0%
TAGCTCCTGCCCGGGATTTC+TGG - chr4_2:44949282-44949301 Msa0601880:intron 60.0%
AGAGTCCAGAAATCCCGGGC+AGG + chr4_2:44949290-44949309 None:intergenic 60.0%
! GAGAGGTCCCTGTCTGGTTC+TGG - chr4_2:44949440-44949459 Msa0601880:five_prime_UTR 60.0%
!! TCCCTGTCTGGTTCTGGCAC+TGG - chr4_2:44949446-44949465 Msa0601880:intron 60.0%
GCCAGTGCCAGAACCAGACA+GGG + chr4_2:44949450-44949469 None:intergenic 60.0%
AGAGCCGAAATGCTCCCGAG+TGG - chr4_2:44949500-44949519 Msa0601880:intron 60.0%
GCACTGCCGTGAGTTGTCGT+TGG + chr4_2:44951347-44951366 None:intergenic 60.0%
GTCGACATGCAGATCCCAGC+TGG + chr4_2:44952214-44952233 None:intergenic 60.0%
CAACCGAATCCGGACCAGGC+TGG + chr4_2:44948858-44948877 None:intergenic 65.0%
! CAGCCTGGTCCGGATTCGGT+TGG - chr4_2:44948856-44948875 Msa0601880:five_prime_UTR 65.0%
GGAGTGGCAGCTCGAGCTTG+CGG - chr4_2:44948907-44948926 Msa0601880:five_prime_UTR 65.0%
CAACGACGCTAGCTCCTGCC+CGG - chr4_2:44949273-44949292 Msa0601880:intron 65.0%
AACGACGCTAGCTCCTGCCC+GGG - chr4_2:44949274-44949293 Msa0601880:intron 65.0%
GGCCAGTGCCAGAACCAGAC+AGG + chr4_2:44949451-44949470 None:intergenic 65.0%
CGGGCAGGAGCTAGCGTCGT+TGG + chr4_2:44949275-44949294 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 44946658 44952635 44946658 ID=Msa0601880;Name=Msa0601880
chr4_2 mRNA 44946658 44952635 44946658 ID=Msa0601880-mRNA-1;Parent=Msa0601880;Name=Msa0601880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=2909|1|1|1|0.93|0.88|17|290|143
chr4_2 exon 44946658 44947097 44946658 ID=Msa0601880-mRNA-1:exon:10026;Parent=Msa0601880-mRNA-1
chr4_2 exon 44947198 44947347 44947198 ID=Msa0601880-mRNA-1:exon:10025;Parent=Msa0601880-mRNA-1
chr4_2 exon 44947480 44948015 44947480 ID=Msa0601880-mRNA-1:exon:10024;Parent=Msa0601880-mRNA-1
chr4_2 exon 44948174 44948309 44948174 ID=Msa0601880-mRNA-1:exon:10023;Parent=Msa0601880-mRNA-1
chr4_2 exon 44948527 44948607 44948527 ID=Msa0601880-mRNA-1:exon:10022;Parent=Msa0601880-mRNA-1
chr4_2 exon 44948775 44948963 44948775 ID=Msa0601880-mRNA-1:exon:10021;Parent=Msa0601880-mRNA-1
chr4_2 exon 44949043 44949226 44949043 ID=Msa0601880-mRNA-1:exon:10020;Parent=Msa0601880-mRNA-1
chr4_2 exon 44949358 44949464 44949358 ID=Msa0601880-mRNA-1:exon:10019;Parent=Msa0601880-mRNA-1
chr4_2 exon 44949549 44949623 44949549 ID=Msa0601880-mRNA-1:exon:10018;Parent=Msa0601880-mRNA-1
chr4_2 exon 44949704 44949859 44949704 ID=Msa0601880-mRNA-1:exon:10017;Parent=Msa0601880-mRNA-1
chr4_2 exon 44949947 44950030 44949947 ID=Msa0601880-mRNA-1:exon:10016;Parent=Msa0601880-mRNA-1
chr4_2 exon 44950106 44950219 44950106 ID=Msa0601880-mRNA-1:exon:10015;Parent=Msa0601880-mRNA-1
chr4_2 exon 44950339 44950434 44950339 ID=Msa0601880-mRNA-1:exon:10014;Parent=Msa0601880-mRNA-1
chr4_2 exon 44950774 44950864 44950774 ID=Msa0601880-mRNA-1:exon:10013;Parent=Msa0601880-mRNA-1
chr4_2 exon 44950959 44951044 44950959 ID=Msa0601880-mRNA-1:exon:10012;Parent=Msa0601880-mRNA-1
chr4_2 exon 44951432 44951591 44951432 ID=Msa0601880-mRNA-1:exon:10011;Parent=Msa0601880-mRNA-1
chr4_2 exon 44951690 44952635 44951690 ID=Msa0601880-mRNA-1:exon:10010;Parent=Msa0601880-mRNA-1
chr4_2 five_prime_UTR 44951690 44952635 44951690 ID=Msa0601880-mRNA-1:five_prime_utr;Parent=Msa0601880-mRNA-1
chr4_2 five_prime_UTR 44951432 44951591 44951432 ID=Msa0601880-mRNA-1:five_prime_utr;Parent=Msa0601880-mRNA-1
chr4_2 five_prime_UTR 44950959 44951044 44950959 ID=Msa0601880-mRNA-1:five_prime_utr;Parent=Msa0601880-mRNA-1
chr4_2 five_prime_UTR 44950774 44950864 44950774 ID=Msa0601880-mRNA-1:five_prime_utr;Parent=Msa0601880-mRNA-1
chr4_2 five_prime_UTR 44950339 44950434 44950339 ID=Msa0601880-mRNA-1:five_prime_utr;Parent=Msa0601880-mRNA-1
chr4_2 five_prime_UTR 44950106 44950219 44950106 ID=Msa0601880-mRNA-1:five_prime_utr;Parent=Msa0601880-mRNA-1
chr4_2 five_prime_UTR 44949947 44950030 44949947 ID=Msa0601880-mRNA-1:five_prime_utr;Parent=Msa0601880-mRNA-1
chr4_2 five_prime_UTR 44949704 44949859 44949704 ID=Msa0601880-mRNA-1:five_prime_utr;Parent=Msa0601880-mRNA-1
chr4_2 five_prime_UTR 44949549 44949623 44949549 ID=Msa0601880-mRNA-1:five_prime_utr;Parent=Msa0601880-mRNA-1
chr4_2 five_prime_UTR 44949358 44949464 44949358 ID=Msa0601880-mRNA-1:five_prime_utr;Parent=Msa0601880-mRNA-1
chr4_2 five_prime_UTR 44949043 44949226 44949043 ID=Msa0601880-mRNA-1:five_prime_utr;Parent=Msa0601880-mRNA-1
chr4_2 five_prime_UTR 44948775 44948963 44948775 ID=Msa0601880-mRNA-1:five_prime_utr;Parent=Msa0601880-mRNA-1
chr4_2 five_prime_UTR 44948527 44948607 44948527 ID=Msa0601880-mRNA-1:five_prime_utr;Parent=Msa0601880-mRNA-1
chr4_2 five_prime_UTR 44948174 44948309 44948174 ID=Msa0601880-mRNA-1:five_prime_utr;Parent=Msa0601880-mRNA-1
chr4_2 five_prime_UTR 44947612 44948015 44947612 ID=Msa0601880-mRNA-1:five_prime_utr;Parent=Msa0601880-mRNA-1
chr4_2 CDS 44947480 44947611 44947480 ID=Msa0601880-mRNA-1:cds;Parent=Msa0601880-mRNA-1
chr4_2 CDS 44947198 44947347 44947198 ID=Msa0601880-mRNA-1:cds;Parent=Msa0601880-mRNA-1
chr4_2 CDS 44946948 44947097 44946948 ID=Msa0601880-mRNA-1:cds;Parent=Msa0601880-mRNA-1
chr4_2 three_prime_UTR 44946658 44946947 44946658 ID=Msa0601880-mRNA-1:three_prime_utr;Parent=Msa0601880-mRNA-1
Gene Sequence

>Msa0601880

ATGCGTTTATCTTTCCCTTTAATCAGTTACTATTTGGGGACAGACTTGTTGAGATCAGATTCTCTTGTTGGCGACTTGATGCTGAAACAACTGTGGCATCACCAGGACGCGATTTTATGCTGTTCATTGAAGTCGCAGCCGGTGTTCGTATTTGCAAATCAAGCTGGCCTTGACATGTTAGAAACAACTCTAGTAGCTTTACAAGACATCACATTGGATAAAATATTTGACGAGTCTGGTCGCAAGGCGTTGTGTGCAGATTTTGCCAAGTTAATGCAACAGGGGTTTGCTTATCTGCCAGCTGGGATCTGCATGTCGACAATGGGGCGGCATGTTTCGTACGAGCAAGCTATTGCATGGAAAGTGCTAACACCAGAAGATAACACTGTTCATTGCTTAGCTTTCTCTTTCATAAATTGGTCATTTGTATGA
Protein sequence

>Msa0601880

MRLSFPLISYYLGTDLLRSDSLVGDLMLKQLWHHQDAILCCSLKSQPVFVFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFAYLPAGICMSTMGRHVSYEQAIAWKVLTPEDNTVHCLAFSFINWSFV*