AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0266180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0266180 MtrunA17_Chr2g0331411 95.107 327 14 2 1 326 1 326 0.0 638
Msa0266180 MtrunA17_Chr8g0390281 54.438 338 97 12 1 326 1 293 5.45e-104 306
Msa0266180 MtrunA17_Chr5g0411501 49.721 358 110 10 1 326 16 335 6.96e-104 307
Msa0266180 MtrunA17_Chr8g0366881 50.737 339 120 9 6 326 39 348 7.00e-102 303
Msa0266180 MtrunA17_Chr6g0486121 53.398 309 78 9 20 326 10 254 8.23e-92 274
Msa0266180 MtrunA17_Chr5g0428141 49.425 348 124 12 2 326 29 347 4.22e-90 273
Msa0266180 MtrunA17_Chr1g0190711 44.156 308 101 8 23 326 13 253 1.69e-65 206
Msa0266180 MtrunA17_Chr1g0184791 64.024 164 53 3 167 326 84 245 1.71e-65 206
Msa0266180 MtrunA17_Chr7g0260641 62.733 161 55 3 167 326 94 250 1.51e-64 204
Msa0266180 MtrunA17_Chr1g0187921 62.112 161 58 2 167 326 78 236 1.71e-63 201
Msa0266180 MtrunA17_Chr1g0166011 49.741 193 64 6 128 314 17 182 5.35e-51 167
Msa0266180 MtrunA17_Chr1g0184801 44.053 227 101 5 90 315 1 202 4.09e-50 165
Msa0266180 MtrunA17_Chr7g0260621 49.143 175 63 4 143 315 52 202 4.63e-47 157
Msa0266180 MtrunA17_Chr1g0187961 54.362 149 41 5 166 314 57 178 8.43e-46 153
Msa0266180 MtrunA17_Chr1g0183251 44.149 188 71 6 171 325 81 267 4.04e-36 131
Msa0266180 MtrunA17_Chr4g0004181 49.669 151 44 5 170 318 52 172 5.35e-32 117
Msa0266180 MtrunA17_Chr2g0330951 40.113 177 86 4 154 310 78 254 1.93e-31 119
Msa0266180 MtrunA17_Chr2g0332141 48.000 125 52 4 206 326 6 121 1.14e-30 112
Msa0266180 MtrunA17_Chr8g0340731 41.401 157 77 3 169 310 104 260 2.77e-29 113
Msa0266180 MtrunA17_Chr4g0069561 34.899 149 64 7 166 308 60 181 1.42e-17 79.3
Msa0266180 MtrunA17_Chr3g0137601 30.323 155 77 6 163 310 79 209 1.02e-16 77.8
Msa0266180 MtrunA17_Chr7g0270851 39.423 104 49 3 204 307 66 155 2.94e-15 72.4
Msa0266180 MtrunA17_Chr1g0193861 39.216 102 48 2 206 307 83 170 3.22e-15 72.8
Msa0266180 MtrunA17_Chr1g0209181 30.137 146 80 4 163 307 44 168 5.84e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0266180 AT4G29080.1 53.043 345 101 12 1 326 3 305 5.12e-101 300
Msa0266180 AT2G22670.3 49.547 331 123 7 6 325 21 318 4.28e-98 293
Msa0266180 AT2G22670.1 49.547 331 123 7 6 325 21 318 4.28e-98 293
Msa0266180 AT2G22670.4 49.547 331 123 7 6 325 38 335 7.03e-98 293
Msa0266180 AT2G22670.5 48.943 331 123 8 6 325 21 316 8.69e-95 284
Msa0266180 AT2G22670.2 48.943 331 123 8 6 325 21 316 8.69e-95 284
Msa0266180 AT5G65670.2 48.193 332 127 9 6 323 33 333 3.74e-90 273
Msa0266180 AT5G65670.1 47.904 334 127 10 6 323 33 335 2.26e-88 268
Msa0266180 AT4G14550.1 42.951 305 94 6 25 326 1 228 3.11e-68 213
Msa0266180 AT3G04730.1 50.877 228 90 4 115 326 15 236 5.84e-66 207
Msa0266180 AT4G14550.2 42.662 293 88 6 25 314 1 216 2.40e-63 201
Msa0266180 AT3G23050.1 41.311 305 98 7 25 321 6 237 6.73e-61 195
Msa0266180 AT1G04250.1 51.232 203 86 5 127 325 35 228 2.30e-58 188
Msa0266180 AT4G14550.3 39.706 272 84 6 25 293 1 195 4.72e-50 165
Msa0266180 AT1G04240.1 56.000 150 45 4 166 315 58 186 4.37e-48 160
Msa0266180 AT5G43700.1 51.136 176 60 6 140 315 33 182 1.67e-47 158
Msa0266180 AT1G04240.2 56.000 150 45 4 165 314 157 285 2.82e-47 161
Msa0266180 AT3G23030.1 49.162 179 56 5 139 314 24 170 1.26e-44 150
Msa0266180 AT3G23030.2 49.162 179 56 5 139 314 111 257 6.44e-44 152
Msa0266180 AT3G23050.2 37.545 277 92 7 25 293 6 209 2.75e-43 148
Msa0266180 AT4G14560.1 54.545 154 40 3 158 311 41 164 1.27e-40 140
Msa0266180 AT1G52830.1 44.785 163 62 4 152 314 50 184 4.22e-40 139
Msa0266180 AT3G15540.1 49.390 164 56 6 159 319 56 195 6.70e-39 136
Msa0266180 AT4G28640.1 44.571 175 77 5 157 315 72 242 5.29e-36 130
Msa0266180 AT4G28640.3 44.509 173 76 5 157 313 72 240 8.12e-36 130
Msa0266180 AT4G28640.2 44.509 173 76 5 157 313 72 240 5.71e-35 129
Msa0266180 AT2G33310.2 39.894 188 88 2 149 317 53 234 6.53e-35 127
Msa0266180 AT2G33310.3 42.286 175 75 3 163 317 65 233 1.01e-34 127
Msa0266180 AT2G33310.1 42.286 175 75 3 163 317 65 233 1.01e-34 127
Msa0266180 AT1G15580.1 46.528 144 44 3 167 309 48 159 2.96e-34 123
Msa0266180 AT1G04550.2 39.683 189 83 3 160 326 57 236 8.68e-34 124
Msa0266180 AT3G16500.1 37.198 207 104 5 126 310 50 252 1.04e-31 120
Msa0266180 AT3G16500.2 37.198 207 104 5 126 310 50 252 1.16e-31 119
Msa0266180 AT4G14550.4 35.841 226 67 5 25 247 1 151 3.15e-29 110
Msa0266180 AT5G25890.1 41.060 151 66 4 171 321 47 174 4.34e-29 110
Msa0266180 AT1G51950.1 38.012 171 82 3 160 310 84 250 4.16e-28 110
Msa0266180 AT1G04100.1 38.922 167 74 4 174 314 95 259 5.89e-28 109
Msa0266180 AT3G23050.3 32.900 231 76 6 25 247 6 165 4.57e-24 97.1
Msa0266180 AT3G17600.1 37.241 145 63 6 164 307 37 154 5.29e-21 88.6
Msa0266180 AT3G62100.1 42.574 101 43 2 207 307 83 168 2.79e-18 81.3
Msa0266180 AT2G46990.1 41.584 101 44 2 207 307 85 170 8.63e-18 80.1
Msa0266180 AT4G32280.2 35.644 101 45 2 207 307 118 198 2.17e-14 71.6
Msa0266180 AT4G32280.1 28.571 168 69 4 171 307 93 240 3.36e-14 71.6
Msa0266180 AT3G62100.2 41.379 87 36 2 207 293 83 154 1.61e-13 67.8
Msa0266180 AT2G46990.2 41.379 87 36 2 207 293 85 156 1.96e-13 67.4
Msa0266180 AT1G15050.2 36.190 105 51 1 208 312 62 150 7.72e-12 63.2
Msa0266180 AT1G15050.1 36.190 105 51 1 208 312 94 182 1.39e-11 63.2
Msa0266180 AT2G01200.2 34.127 126 63 2 187 312 83 188 1.92e-11 62.8
Msa0266180 AT2G01200.1 34.127 126 63 2 187 312 83 188 1.92e-11 62.8

Find 94 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAGGAAGTTTGAGTTTA+TGG 0.105721 2_2:-66587030 Msa0266180:three_prime_UTR
TGCAATTCTCCTGGACTTCC+TGG 0.219552 2_2:-66587842 Msa0266180:CDS
TTTGAACAATTTATGTAGTT+TGG 0.243085 2_2:-66586805 Msa0266180:three_prime_UTR
AATGTTCAAAAGAACCTTCT+TGG 0.276149 2_2:+66589441 None:intergenic
TGCTTGTAGGTGATGTTCCT+TGG 0.297899 2_2:-66587730 Msa0266180:CDS
GATGCCATTGATGAGTCTTC+TGG 0.307952 2_2:-66588995 Msa0266180:CDS
GAAAAGAATAAACAGGTTAA+TGG 0.313899 2_2:-66588803 Msa0266180:CDS
TATCAGTGAATTCTCCTCTT+TGG 0.315505 2_2:+66587069 None:intergenic
CTGTAATAGGGCACAGGTTG+TGG 0.328430 2_2:-66588348 Msa0266180:intron
GCTTGTAGGTGATGTTCCTT+GGG 0.334696 2_2:-66587729 Msa0266180:CDS
CAAGACCTACAACAACTATA+TGG 0.360524 2_2:-66588177 Msa0266180:CDS
TCACTGATATGCATATATAA+AGG 0.364308 2_2:-66587055 Msa0266180:three_prime_UTR
ATGAAAGGCTCCGAGGCAAT+TGG 0.372758 2_2:-66587426 Msa0266180:CDS
AATGTTCTTCAAATCCTTGT+TGG 0.373464 2_2:+66589081 None:intergenic
TCTTTGAGGGATCTTCTTCA+TGG 0.378941 2_2:-66587797 Msa0266180:CDS
CCTATGTAATCATGTTCTAA+TGG 0.385937 2_2:+66589247 None:intergenic
ATCTTCTTCTCTCAACTTCA+AGG 0.387877 2_2:-66589194 Msa0266180:CDS
TTTAGTTAGTAGAATTCATC+TGG 0.388369 2_2:-66586938 Msa0266180:three_prime_UTR
TTGTGCACCTTTGAAGTTTG+TGG 0.392548 2_2:-66586868 Msa0266180:three_prime_UTR
TCTCTATGTAAAAGTCAGTA+TGG 0.396729 2_2:-66588231 Msa0266180:CDS
AAGTTCCATATAGTTGTTGT+AGG 0.402215 2_2:+66588172 None:intergenic
ATGTTCAAAAGAACCTTCTT+GGG 0.409898 2_2:+66589442 None:intergenic
TTGATGAGTCTTCTGGGAAA+TGG 0.428366 2_2:-66588988 Msa0266180:CDS
AGATCAACCTTTCTGAGATA+AGG 0.437164 2_2:+66588200 None:intergenic
TTTCCAACATTCCCTCCTCT+TGG 0.438896 2_2:+66588920 None:intergenic
ATGAAGATAAAGATGGAGAT+TGG 0.439416 2_2:-66587754 Msa0266180:CDS
CCTGGACTTCCTGGGAAAGA+TGG 0.446287 2_2:-66587833 Msa0266180:CDS
AAATATGTGTATATATTCTC+TGG 0.453827 2_2:+66586907 None:intergenic
ATGCCATTGATGAGTCTTCT+GGG 0.457749 2_2:-66588994 Msa0266180:CDS
TTTGTGGCTGTATAAAAGAA+TGG 0.458305 2_2:-66586852 Msa0266180:three_prime_UTR
TGTACATGAAAAGAATAAAC+AGG 0.460606 2_2:-66588810 Msa0266180:CDS
TGTAATAGGGCACAGGTTGT+GGG 0.465911 2_2:-66588347 Msa0266180:intron
GACTAAGTGAGAGCTCTTTG+AGG 0.466933 2_2:-66587811 Msa0266180:CDS
TCAGGTCAATGCAATTCTCC+TGG 0.470704 2_2:-66587851 Msa0266180:intron
CAAGAGCCATGGGAAAATCT+AGG 0.474403 2_2:-66587123 Msa0266180:CDS
CCATCTTTCCCAGGAAGTCC+AGG 0.476059 2_2:+66587833 None:intergenic
AAGAACCTTGTAGCTAGTGT+TGG 0.483602 2_2:-66589037 Msa0266180:CDS
TGAAAGGCTCCGAGGCAATT+GGG 0.483983 2_2:-66587425 Msa0266180:CDS
CCGACTCGTGTAGGAGACTA+AGG 0.487592 2_2:-66587452 Msa0266180:CDS
TTTCGAAACGATCGAATTGG+TGG 0.491043 2_2:+66588320 None:intergenic
ACATAGAGACAGTCAAATCC+TGG 0.496327 2_2:+66588245 None:intergenic
TATACAGCCACAAACTTCAA+AGG 0.497093 2_2:+66586861 None:intergenic
GTTAGTACCAATGGTAAAGC+AGG 0.504295 2_2:+66588124 None:intergenic
TCAGTTGCTACTGCTGCTGC+TGG 0.505717 2_2:-66589121 Msa0266180:CDS
GATGGAGATTGGATGCTTGT+AGG 0.506785 2_2:-66587743 Msa0266180:CDS
CTATCAGGAGATTCACAACC+AGG 0.513603 2_2:+66589148 None:intergenic
GAGCTCAGACTAGGCTTACC+TGG 0.513881 2_2:-66589166 Msa0266180:CDS
GATGATAGTTATAGAAGACT+TGG 0.515296 2_2:+66589340 None:intergenic
TGGAGTTTCTCTATGAATGA+TGG 0.515427 2_2:-66588968 Msa0266180:CDS
TTTAGCAAATAATCCATCAA+TGG 0.515926 2_2:-66589224 Msa0266180:CDS
GCTAGTGTTGGAGCTAAAAG+AGG 0.516388 2_2:-66589025 Msa0266180:CDS
GTTGCTACTGCTGCTGCTGG+TGG 0.518150 2_2:-66589118 Msa0266180:CDS
TAGCTCCAACACTAGCTACA+AGG 0.519601 2_2:+66589032 None:intergenic
CCATTAGAACATGATTACAT+AGG 0.521656 2_2:-66589247 Msa0266180:CDS
GGCTCCGAGGCAATTGGGCT+AGG 0.521923 2_2:-66587420 Msa0266180:intron
GATGAAGCTGAGGGAAAACC+AGG 0.522587 2_2:-66588263 Msa0266180:CDS
GGTAGGAAATCGGTTTGCTA+TGG 0.523498 2_2:+66586680 None:intergenic
ATGTTCACCTGCTTTACCAT+TGG 0.525163 2_2:-66588131 Msa0266180:intron
TAGTAGCATAGGAGAGGAGT+TGG 0.526621 2_2:+66589407 None:intergenic
TCTCCAAGAGGAGGGAATGT+TGG 0.528075 2_2:-66588923 Msa0266180:CDS
TCACTTAGTCCATCTTTCCC+AGG 0.528669 2_2:+66587824 None:intergenic
ACTAAGTGAGAGCTCTTTGA+GGG 0.537995 2_2:-66587810 Msa0266180:CDS
GCAATTCTCCTGGACTTCCT+GGG 0.538453 2_2:-66587841 Msa0266180:CDS
CTTACATATGAAGATAAAGA+TGG 0.540325 2_2:-66587761 Msa0266180:CDS
AGCATAGGAGAGGAGTTGGC+TGG 0.541759 2_2:+66589411 None:intergenic
CATACCTAGCCCAATTGCCT+CGG 0.543011 2_2:+66587416 None:intergenic
GTTTGCAGCTCCAAGAGCCA+TGG 0.546429 2_2:-66587134 Msa0266180:intron
TATGTAAAAGTCAGTATGGA+TGG 0.548265 2_2:-66588227 Msa0266180:CDS
AGTGAAGATGGGAAGCTGCC+CGG 0.551245 2_2:-66586747 Msa0266180:three_prime_UTR
AGTCTCTTTCTTTGCCAACA+AGG 0.555451 2_2:-66589095 Msa0266180:CDS
AAAGAAACATACTTTGCAGC+AGG 0.558479 2_2:+66588758 None:intergenic
TGCATATATAAAGGTTTACA+AGG 0.561342 2_2:-66587046 Msa0266180:three_prime_UTR
TTTGCAGCTCCAAGAGCCAT+GGG 0.568102 2_2:-66587133 Msa0266180:intron
TGATATGTATGTAGTAGCAT+AGG 0.570912 2_2:+66589396 None:intergenic
TCTATGAATGATGGATCTGA+AGG 0.572939 2_2:-66588959 Msa0266180:CDS
AAGGAAACTGAGCTCAGACT+AGG 0.575995 2_2:-66589175 Msa0266180:CDS
AAACTTCTGTAATAGGGCAC+AGG 0.579506 2_2:-66588354 Msa0266180:intron
TGGTGCTCCTTATCTCAGAA+AGG 0.583817 2_2:-66588207 Msa0266180:CDS
TTTCCCAGAAGACTCATCAA+TGG 0.587418 2_2:+66588991 None:intergenic
CTTTGTTCTCTCCAAGAGGA+GGG 0.588412 2_2:-66588931 Msa0266180:CDS
TGGTACAGAAAGTCCCAAGA+AGG 0.589577 2_2:-66589455 Msa0266180:five_prime_UTR
AAAGAACAATGATGAAGCTG+AGG 0.598000 2_2:-66588273 Msa0266180:CDS
GCTTTGTTCTCTCCAAGAGG+AGG 0.598726 2_2:-66588932 Msa0266180:CDS
GGATGTTCGCCGACTCGTGT+AGG 0.604960 2_2:-66587461 Msa0266180:CDS
TGTATGTAGTAGCATAGGAG+AGG 0.607709 2_2:+66589401 None:intergenic
CTAGCTACAAGGTTCTTCAA+AGG 0.626425 2_2:+66589043 None:intergenic
ATAGGGCACAGGTTGTGGGA+TGG 0.638025 2_2:-66588343 Msa0266180:intron
AAGAACAATGATGAAGCTGA+GGG 0.641734 2_2:-66588272 Msa0266180:CDS
GCTGCTTTGTTCTCTCCAAG+AGG 0.650123 2_2:-66588935 Msa0266180:CDS
CCTTAGTCTCCTACACGAGT+CGG 0.654169 2_2:+66587452 None:intergenic
AGGAGACTAAGGATCATGAA+AGG 0.655773 2_2:-66587441 Msa0266180:CDS
CTTGTAGGTGATGTTCCTTG+GGG 0.665765 2_2:-66587728 Msa0266180:CDS
TTGTAGGTGATGTTCCTTGG+GGG 0.698490 2_2:-66587727 Msa0266180:intron
AAGGATCATGAAAGGCTCCG+AGG 0.730710 2_2:-66587433 Msa0266180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTTTGTTTTTTTAT+GGG - chr2_2:66587584-66587603 Msa0266180:intron 10.0%
!!! TATTTGATATTTTTTCATCT+AGG - chr2_2:66586879-66586898 Msa0266180:three_prime_UTR 15.0%
!!! GTTTTTTGTTTGTTTTTTTA+TGG - chr2_2:66587583-66587602 Msa0266180:intron 15.0%
!!! AAATTATTTACATGTGTTTT+AGG - chr2_2:66588135-66588154 Msa0266180:CDS 15.0%
!!! GTTACATATATTTTTGATTT+TGG + chr2_2:66589167-66589186 None:intergenic 15.0%
!! AAAAGAAAGAGTAAAAAGTT+TGG - chr2_2:66586690-66586709 Msa0266180:three_prime_UTR 20.0%
!! AAAAAATCATGTCTATTCAA+GGG + chr2_2:66587630-66587649 None:intergenic 20.0%
!! AAAAAAATCATGTCTATTCA+AGG + chr2_2:66587631-66587650 None:intergenic 20.0%
!!! CACTATTTTTGAATTATACA+TGG + chr2_2:66587714-66587733 None:intergenic 20.0%
!! CATGTATAATTCAAAAATAG+TGG - chr2_2:66587712-66587731 Msa0266180:intron 20.0%
!! AATAGTGGTTAATGAATATT+TGG - chr2_2:66587727-66587746 Msa0266180:intron 20.0%
!! ATAGTGGTTAATGAATATTT+GGG - chr2_2:66587728-66587747 Msa0266180:CDS 20.0%
!! GTGTGTAAAAAATCAAAATA+AGG + chr2_2:66588097-66588116 None:intergenic 20.0%
!!! ATTTTACAGCAAGTAAAAAA+AGG + chr2_2:66588119-66588138 None:intergenic 20.0%
!! TAAAATAAACAACAAAAGTC+TGG + chr2_2:66588858-66588877 None:intergenic 20.0%
!! ATATCTTGTAATCTTTGATA+TGG - chr2_2:66588951-66588970 Msa0266180:CDS 20.0%
!! AAATATGTGTATATATTCTC+TGG + chr2_2:66589261-66589280 None:intergenic 20.0%
!! TTTGAACAATTTATGTAGTT+TGG - chr2_2:66589360-66589379 Msa0266180:five_prime_UTR 20.0%
! TTTAGCAAATAATCCATCAA+TGG - chr2_2:66586941-66586960 Msa0266180:three_prime_UTR 25.0%
! TGTACATGAAAAGAATAAAC+AGG - chr2_2:66587355-66587374 Msa0266180:intron 25.0%
! GAAAAGAATAAACAGGTTAA+TGG - chr2_2:66587362-66587381 Msa0266180:intron 25.0%
! CAAAAAAAAGTAAACAGAAC+AGG + chr2_2:66587478-66587497 None:intergenic 25.0%
!!! ACATGATTTTTTTCTCTCTT+TGG - chr2_2:66587638-66587657 Msa0266180:intron 25.0%
! TTGTATCAAACTTCTGTAAT+AGG - chr2_2:66587804-66587823 Msa0266180:CDS 25.0%
! TGTATCAAACTTCTGTAATA+GGG - chr2_2:66587805-66587824 Msa0266180:CDS 25.0%
! TAAGGTAAGTAATTTGAAGA+AGG + chr2_2:66588071-66588090 None:intergenic 25.0%
! AAAATCAAAATAAGGAGCTA+AGG + chr2_2:66588089-66588108 None:intergenic 25.0%
! ATATTCGTATTCCTAAAATC+AGG - chr2_2:66588296-66588315 Msa0266180:CDS 25.0%
! CTTACATATGAAGATAAAGA+TGG - chr2_2:66588404-66588423 Msa0266180:intron 25.0%
!! ATTTCTTTTTATTCGCTGTT+TGG - chr2_2:66588467-66588486 Msa0266180:intron 25.0%
!!! AAGTTGACTTATTTTGTCTT+TGG + chr2_2:66588567-66588586 None:intergenic 25.0%
! TCACTGATATGCATATATAA+AGG - chr2_2:66589110-66589129 Msa0266180:CDS 25.0%
! TGCATATATAAAGGTTTACA+AGG - chr2_2:66589119-66589138 Msa0266180:CDS 25.0%
! TTTAGTTAGTAGAATTCATC+TGG - chr2_2:66589227-66589246 Msa0266180:CDS 25.0%
!! TGATTTTTATGTAGTGAAGA+TGG - chr2_2:66589406-66589425 Msa0266180:five_prime_UTR 25.0%
!! GATTTTTATGTAGTGAAGAT+GGG - chr2_2:66589407-66589426 Msa0266180:five_prime_UTR 25.0%
!! TCAAATGATATTTTCGATTC+CGG + chr2_2:66589440-66589459 None:intergenic 25.0%
ATGTTCAAAAGAACCTTCTT+GGG + chr2_2:66586726-66586745 None:intergenic 30.0%
AATGTTCAAAAGAACCTTCT+TGG + chr2_2:66586727-66586746 None:intergenic 30.0%
TGATATGTATGTAGTAGCAT+AGG + chr2_2:66586772-66586791 None:intergenic 30.0%
GATGATAGTTATAGAAGACT+TGG + chr2_2:66586828-66586847 None:intergenic 30.0%
CCTATGTAATCATGTTCTAA+TGG + chr2_2:66586921-66586940 None:intergenic 30.0%
CCATTAGAACATGATTACAT+AGG - chr2_2:66586918-66586937 Msa0266180:three_prime_UTR 30.0%
AATGTTCTTCAAATCCTTGT+TGG + chr2_2:66587087-66587106 None:intergenic 30.0%
AATGTTGGAAAAACTCTTGT+TGG - chr2_2:66587257-66587276 Msa0266180:intron 30.0%
TGCAACAAAAAACATCAAAG+AGG - chr2_2:66587319-66587338 Msa0266180:intron 30.0%
! CTTTTGTTCATGTCATGTTT+TGG - chr2_2:66587504-66587523 Msa0266180:intron 30.0%
!!! ATTTGGGTTGTTTTCAGAAA+AGG - chr2_2:66587744-66587763 Msa0266180:CDS 30.0%
!!! TTTTTTCGAAACGATCGAAT+TGG + chr2_2:66587851-66587870 None:intergenic 30.0%
TCTCTATGTAAAAGTCAGTA+TGG - chr2_2:66587934-66587953 Msa0266180:intron 30.0%
TATGTAAAAGTCAGTATGGA+TGG - chr2_2:66587938-66587957 Msa0266180:intron 30.0%
AAGTTCCATATAGTTGTTGT+AGG + chr2_2:66587996-66588015 None:intergenic 30.0%
TATCTTATCTAGATCCTGTT+TGG - chr2_2:66588211-66588230 Msa0266180:CDS 30.0%
AATTAACTGTGTAACCAAAC+AGG + chr2_2:66588228-66588247 None:intergenic 30.0%
!! AATTGCATTGACCTGATTTT+AGG + chr2_2:66588310-66588329 None:intergenic 30.0%
ATGAAGATAAAGATGGAGAT+TGG - chr2_2:66588411-66588430 Msa0266180:intron 30.0%
CAGCTTAATTAAGCACTTAT+AGG - chr2_2:66588495-66588514 Msa0266180:intron 30.0%
!! GCTTCAATATGAAAGTGTTT+GGG + chr2_2:66588623-66588642 None:intergenic 30.0%
!! AGCTTCAATATGAAAGTGTT+TGG + chr2_2:66588624-66588643 None:intergenic 30.0%
! AATCGGCTTAACTAAATTGT+TGG - chr2_2:66588673-66588692 Msa0266180:intron 30.0%
CAATCTAATAATTGTAGTGC+TGG + chr2_2:66588928-66588947 None:intergenic 30.0%
TAATCTTTGATATGGATCAC+TGG - chr2_2:66588959-66588978 Msa0266180:CDS 30.0%
!!! ATGGATCACTGGTTTTATAT+TGG - chr2_2:66588970-66588989 Msa0266180:CDS 30.0%
! TACAAGGAAGTTTGAGTTTA+TGG - chr2_2:66589135-66589154 Msa0266180:CDS 30.0%
TTTGTGGCTGTATAAAAGAA+TGG - chr2_2:66589313-66589332 Msa0266180:five_prime_UTR 30.0%
! CAAATGATATTTTCGATTCC+GGG + chr2_2:66589439-66589458 None:intergenic 30.0%
! GAAGATGTTTTGTCCATTGA+TGG + chr2_2:66586957-66586976 None:intergenic 35.0%
ATCTTCTTCTCTCAACTTCA+AGG - chr2_2:66586971-66586990 Msa0266180:three_prime_UTR 35.0%
!! GTAGCAACTGATTTTCTATC+AGG + chr2_2:66587035-66587054 None:intergenic 35.0%
TGGAGTTTCTCTATGAATGA+TGG - chr2_2:66587197-66587216 Msa0266180:intron 35.0%
!! TCTATGAATGATGGATCTGA+AGG - chr2_2:66587206-66587225 Msa0266180:intron 35.0%
AAAGAAACATACTTTGCAGC+AGG + chr2_2:66587410-66587429 None:intergenic 35.0%
TGGTTACCTAGATTAGACAA+AGG - chr2_2:66587524-66587543 Msa0266180:intron 35.0%
CTTTCACCTTTGTCTAATCT+AGG + chr2_2:66587533-66587552 None:intergenic 35.0%
ATCGTTTCGAAAAAACACGA+TGG - chr2_2:66587856-66587875 Msa0266180:intron 35.0%
AAAGAACAATGATGAAGCTG+AGG - chr2_2:66587892-66587911 Msa0266180:intron 35.0%
AAGAACAATGATGAAGCTGA+GGG - chr2_2:66587893-66587912 Msa0266180:intron 35.0%
!! AGATCAACCTTTCTGAGATA+AGG + chr2_2:66587968-66587987 None:intergenic 35.0%
CAAGACCTACAACAACTATA+TGG - chr2_2:66587988-66588007 Msa0266180:intron 35.0%
GAAGGTAAAGTTAGTACCAA+TGG + chr2_2:66588053-66588072 None:intergenic 35.0%
TTACATGAGAAAGTCAAGCT+AGG + chr2_2:66588170-66588189 None:intergenic 35.0%
AAAGAAATAACTTACCCCCA+AGG + chr2_2:66588455-66588474 None:intergenic 35.0%
GTTAAATCGTGATAGTCCAA+TGG - chr2_2:66588647-66588666 Msa0266180:intron 35.0%
TGATAGTCCAATGGTTGAAT+CGG - chr2_2:66588656-66588675 Msa0266180:intron 35.0%
! ACTAAATTGTTGGTTGATGC+AGG - chr2_2:66588683-66588702 Msa0266180:intron 35.0%
!!! GAGTTTTTCTGGACTAGTTT+TGG + chr2_2:66589070-66589089 None:intergenic 35.0%
TATCAGTGAATTCTCCTCTT+TGG + chr2_2:66589099-66589118 None:intergenic 35.0%
TATACAGCCACAAACTTCAA+AGG + chr2_2:66589307-66589326 None:intergenic 35.0%
TGTATGTAGTAGCATAGGAG+AGG + chr2_2:66586767-66586786 None:intergenic 40.0%
AGTCTCTTTCTTTGCCAACA+AGG - chr2_2:66587070-66587089 Msa0266180:three_prime_UTR 40.0%
CTAGCTACAAGGTTCTTCAA+AGG + chr2_2:66587125-66587144 None:intergenic 40.0%
AAGAACCTTGTAGCTAGTGT+TGG - chr2_2:66587128-66587147 Msa0266180:CDS 40.0%
ATGCCATTGATGAGTCTTCT+GGG - chr2_2:66587171-66587190 Msa0266180:intron 40.0%
TTTCCCAGAAGACTCATCAA+TGG + chr2_2:66587177-66587196 None:intergenic 40.0%
! TTGATGAGTCTTCTGGGAAA+TGG - chr2_2:66587177-66587196 Msa0266180:intron 40.0%
AAACTTCTGTAATAGGGCAC+AGG - chr2_2:66587811-66587830 Msa0266180:CDS 40.0%
TTTCGAAACGATCGAATTGG+TGG + chr2_2:66587848-66587867 None:intergenic 40.0%
ACATAGAGACAGTCAAATCC+TGG + chr2_2:66587923-66587942 None:intergenic 40.0%
ATGTTCACCTGCTTTACCAT+TGG - chr2_2:66588034-66588053 Msa0266180:intron 40.0%
GTTAGTACCAATGGTAAAGC+AGG + chr2_2:66588044-66588063 None:intergenic 40.0%
ACTAAGTGAGAGCTCTTTGA+GGG - chr2_2:66588355-66588374 Msa0266180:intron 40.0%
! TCTTTGAGGGATCTTCTTCA+TGG - chr2_2:66588368-66588387 Msa0266180:intron 40.0%
! AGTTAAGCCGATTCAACCAT+TGG + chr2_2:66588666-66588685 None:intergenic 40.0%
AGGAGACTAAGGATCATGAA+AGG - chr2_2:66588724-66588743 Msa0266180:intron 40.0%
ACTAGTCCAGAAAAACTCGT+TGG - chr2_2:66589072-66589091 Msa0266180:CDS 40.0%
! TTTGGTCCAACGAGTTTTTC+TGG + chr2_2:66589081-66589100 None:intergenic 40.0%
AAAAACTCGTTGGACCAAAG+AGG - chr2_2:66589082-66589101 Msa0266180:CDS 40.0%
!! TTGTGCACCTTTGAAGTTTG+TGG - chr2_2:66589297-66589316 Msa0266180:five_prime_UTR 40.0%
TGGTACAGAAAGTCCCAAGA+AGG - chr2_2:66586710-66586729 Msa0266180:three_prime_UTR 45.0%
TAGTAGCATAGGAGAGGAGT+TGG + chr2_2:66586761-66586780 None:intergenic 45.0%
AAGGAAACTGAGCTCAGACT+AGG - chr2_2:66586990-66587009 Msa0266180:three_prime_UTR 45.0%
CTATCAGGAGATTCACAACC+AGG + chr2_2:66587020-66587039 None:intergenic 45.0%
TAGCTCCAACACTAGCTACA+AGG + chr2_2:66587136-66587155 None:intergenic 45.0%
! GCTAGTGTTGGAGCTAAAAG+AGG - chr2_2:66587140-66587159 Msa0266180:intron 45.0%
GATGCCATTGATGAGTCTTC+TGG - chr2_2:66587170-66587189 Msa0266180:intron 45.0%
CTTTGTTCTCTCCAAGAGGA+GGG - chr2_2:66587234-66587253 Msa0266180:intron 45.0%
TTTCCAACATTCCCTCCTCT+TGG + chr2_2:66587248-66587267 None:intergenic 45.0%
TGTAATAGGGCACAGGTTGT+GGG - chr2_2:66587818-66587837 Msa0266180:CDS 45.0%
TGGTGCTCCTTATCTCAGAA+AGG - chr2_2:66587958-66587977 Msa0266180:intron 45.0%
TCAGGTCAATGCAATTCTCC+TGG - chr2_2:66588314-66588333 Msa0266180:CDS 45.0%
TCACTTAGTCCATCTTTCCC+AGG + chr2_2:66588344-66588363 None:intergenic 45.0%
GACTAAGTGAGAGCTCTTTG+AGG - chr2_2:66588354-66588373 Msa0266180:intron 45.0%
GATGGAGATTGGATGCTTGT+AGG - chr2_2:66588422-66588441 Msa0266180:intron 45.0%
TGCTTGTAGGTGATGTTCCT+TGG - chr2_2:66588435-66588454 Msa0266180:intron 45.0%
GCTTGTAGGTGATGTTCCTT+GGG - chr2_2:66588436-66588455 Msa0266180:intron 45.0%
CTTGTAGGTGATGTTCCTTG+GGG - chr2_2:66588437-66588456 Msa0266180:intron 45.0%
TTGTAGGTGATGTTCCTTGG+GGG - chr2_2:66588438-66588457 Msa0266180:intron 45.0%
! CTAGATTTTCCCATGGCTCT+TGG + chr2_2:66589044-66589063 None:intergenic 45.0%
CAAGAGCCATGGGAAAATCT+AGG - chr2_2:66589042-66589061 Msa0266180:CDS 45.0%
! TTGGCTCCTAGATTTTCCCA+TGG + chr2_2:66589051-66589070 None:intergenic 45.0%
! GCTGCTTTGTTCTCTCCAAG+AGG - chr2_2:66587230-66587249 Msa0266180:intron 50.0%
! GCTTTGTTCTCTCCAAGAGG+AGG - chr2_2:66587233-66587252 Msa0266180:intron 50.0%
TCTCCAAGAGGAGGGAATGT+TGG - chr2_2:66587242-66587261 Msa0266180:intron 50.0%
CTGTAATAGGGCACAGGTTG+TGG - chr2_2:66587817-66587836 Msa0266180:CDS 50.0%
GATGAAGCTGAGGGAAAACC+AGG - chr2_2:66587902-66587921 Msa0266180:intron 50.0%
TGCAATTCTCCTGGACTTCC+TGG - chr2_2:66588323-66588342 Msa0266180:CDS 50.0%
GCAATTCTCCTGGACTTCCT+GGG - chr2_2:66588324-66588343 Msa0266180:CDS 50.0%
CCTTAGTCTCCTACACGAGT+CGG + chr2_2:66588716-66588735 None:intergenic 50.0%
AAGGATCATGAAAGGCTCCG+AGG - chr2_2:66588732-66588751 Msa0266180:intron 50.0%
ATGAAAGGCTCCGAGGCAAT+TGG - chr2_2:66588739-66588758 Msa0266180:intron 50.0%
TGAAAGGCTCCGAGGCAATT+GGG - chr2_2:66588740-66588759 Msa0266180:intron 50.0%
CATACCTAGCCCAATTGCCT+CGG + chr2_2:66588752-66588771 None:intergenic 50.0%
TTTGCAGCTCCAAGAGCCAT+GGG - chr2_2:66589032-66589051 Msa0266180:CDS 50.0%
AGCATAGGAGAGGAGTTGGC+TGG + chr2_2:66586757-66586776 None:intergenic 55.0%
GAGCTCAGACTAGGCTTACC+TGG - chr2_2:66586999-66587018 Msa0266180:three_prime_UTR 55.0%
TCAGTTGCTACTGCTGCTGC+TGG - chr2_2:66587044-66587063 Msa0266180:three_prime_UTR 55.0%
ATAGGGCACAGGTTGTGGGA+TGG - chr2_2:66587822-66587841 Msa0266180:CDS 55.0%
CCATCTTTCCCAGGAAGTCC+AGG + chr2_2:66588335-66588354 None:intergenic 55.0%
CCTGGACTTCCTGGGAAAGA+TGG - chr2_2:66588332-66588351 Msa0266180:CDS 55.0%
! CCGACTCGTGTAGGAGACTA+AGG - chr2_2:66588713-66588732 Msa0266180:intron 55.0%
GTTTGCAGCTCCAAGAGCCA+TGG - chr2_2:66589031-66589050 Msa0266180:CDS 55.0%
AGTGAAGATGGGAAGCTGCC+CGG - chr2_2:66589418-66589437 Msa0266180:five_prime_UTR 55.0%
GTTGCTACTGCTGCTGCTGG+TGG - chr2_2:66587047-66587066 Msa0266180:three_prime_UTR 60.0%
!! GGATGTTCGCCGACTCGTGT+AGG - chr2_2:66588704-66588723 Msa0266180:intron 60.0%
GGCTCCGAGGCAATTGGGCT+AGG - chr2_2:66588745-66588764 Msa0266180:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 66586690 66589497 66586690 ID=Msa0266180;Name=Msa0266180
chr2_2 mRNA 66586690 66589497 66586690 ID=Msa0266180-mRNA-1;Parent=Msa0266180;Name=Msa0266180-mRNA-1;_AED=0.03;_eAED=0.03;_QI=219|1|1|1|1|1|5|421|326
chr2_2 exon 66586690 66587148 66586690 ID=Msa0266180-mRNA-1:exon:21155;Parent=Msa0266180-mRNA-1
chr2_2 exon 66587421 66587482 66587421 ID=Msa0266180-mRNA-1:exon:21154;Parent=Msa0266180-mRNA-1
chr2_2 exon 66587728 66587869 66587728 ID=Msa0266180-mRNA-1:exon:21153;Parent=Msa0266180-mRNA-1
chr2_2 exon 66588132 66588361 66588132 ID=Msa0266180-mRNA-1:exon:21152;Parent=Msa0266180-mRNA-1
chr2_2 exon 66588770 66589497 66588770 ID=Msa0266180-mRNA-1:exon:21151;Parent=Msa0266180-mRNA-1
chr2_2 five_prime_UTR 66589279 66589497 66589279 ID=Msa0266180-mRNA-1:five_prime_utr;Parent=Msa0266180-mRNA-1
chr2_2 CDS 66588770 66589278 66588770 ID=Msa0266180-mRNA-1:cds;Parent=Msa0266180-mRNA-1
chr2_2 CDS 66588132 66588361 66588132 ID=Msa0266180-mRNA-1:cds;Parent=Msa0266180-mRNA-1
chr2_2 CDS 66587728 66587869 66587728 ID=Msa0266180-mRNA-1:cds;Parent=Msa0266180-mRNA-1
chr2_2 CDS 66587421 66587482 66587421 ID=Msa0266180-mRNA-1:cds;Parent=Msa0266180-mRNA-1
chr2_2 CDS 66587111 66587148 66587111 ID=Msa0266180-mRNA-1:cds;Parent=Msa0266180-mRNA-1
chr2_2 three_prime_UTR 66586690 66587110 66586690 ID=Msa0266180-mRNA-1:three_prime_utr;Parent=Msa0266180-mRNA-1
Gene Sequence

>Msa0266180

ATGTCTACACCATTAGAACATGATTACATAGGTTTAGCAAATAATCCATCAATGGACAAAACATCTTCTTCTCTCAACTTCAAGGAAACTGAGCTCAGACTAGGCTTACCTGGTTGTGAATCTCCTGATAGAAAATCAGTTGCTACTGCTGCTGCTGGTGGAGTCTCTTTCTTTGCCAACAAGGATTTGAAGAACATTAATGTTTGTTCTTCTCCTTTGAAGAACCTTGTAGCTAGTGTTGGAGCTAAAAGAGGTTTCTCTGATGCCATTGATGAGTCTTCTGGGAAATGGAGTTTCTCTATGAATGATGGATCTGAAGGAGCTGCTTTGTTCTCTCCAAGAGGAGGGAATGTTGGAAAAACTCTTGTTGGTTTAGAGACTCAAACTAATATTCAGAAGATTAATACAAATGCAACAAAAAACATCAAAGAGGTTCTTCATCAATCTGTACATGAAAAGAATAAACAGGTTAATGGAACAAATGAGCATGCTAATGCTCCTGCTGCAAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCGTTTCGAAAAAACACGATGGCGTCTAATTTGTCAAAGAACAATGATGAAGCTGAGGGAAAACCAGGATTTGACTGTCTCTATGTAAAAGTCAGTATGGATGGTGCTCCTTATCTCAGAAAGGTTGATCTCAAGACCTACAACAACTATATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCACCTGCTTTACCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTTCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGATTGGATGCTTGTAGGTGATGTTCCTTGGGGGATGTTCGCCGACTCGTGTAGGAGACTAAGGATCATGAAAGGCTCCGAGGCAATTGGGCTAGCTCCAAGAGCCATGGGAAAATCTAGGAGCCAAAACTAG

Protein sequence

>Msa0266180

MSTPLEHDYIGLANNPSMDKTSSSLNFKETELRLGLPGCESPDRKSVATAAAGGVSFFANKDLKNINVCSSPLKNLVASVGAKRGFSDAIDESSGKWSFSMNDGSEGAALFSPRGGNVGKTLVGLETQTNIQKINTNATKNIKEVLHQSVHEKNKQVNGTNEHANAPAAKAQVVGWPPIRSFRKNTMASNLSKNNDEAEGKPGFDCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFTCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFADSCRRLRIMKGSEAIGLAPRAMGKSRSQN*