AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0027820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027820 MtrunA17_Chr1g0184231 89.613 491 37 2 1 491 1 477 0.0 899
Msa0027820 MtrunA17_Chr7g0261061 48.450 516 202 8 1 491 1 477 9.68e-133 399
Msa0027820 MtrunA17_Chr7g0239641 31.683 202 96 5 2 178 3 187 7.31e-22 99.4
Msa0027820 MtrunA17_Chr2g0322001 30.000 220 118 8 1 198 1 206 5.36e-20 94.0
Msa0027820 MtrunA17_Chr4g0025571 30.909 220 121 8 1 200 1 209 7.31e-20 93.6
Msa0027820 MtrunA17_Chr2g0317011 28.351 194 86 8 5 169 20 189 1.25e-13 72.8
Msa0027820 MtrunA17_Chr1g0152981 29.412 204 81 10 5 166 12 194 3.17e-12 67.8
Msa0027820 MtrunA17_Chr1g0188861 29.412 170 85 3 1 169 5 140 6.23e-12 68.2
Msa0027820 MtrunA17_Chr1g0185621 26.961 204 118 11 1 179 7 204 8.47e-12 67.8
Msa0027820 MtrunA17_Chr5g0413871 29.524 210 90 9 5 169 14 210 1.33e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027820 AT2G31280.1 32.988 579 266 22 1 492 1 544 2.53e-57 203
Msa0027820 AT2G31280.3 32.988 579 266 22 1 492 1 544 3.74e-57 202
Msa0027820 AT2G31280.2 31.608 541 260 19 6 492 32 516 9.31e-45 168
Msa0027820 AT1G06150.2 45.198 177 75 3 1 171 1 161 5.33e-38 148
Msa0027820 AT1G06150.1 45.198 177 75 3 1 171 1 161 5.70e-38 148
Msa0027820 AT2G27230.2 30.890 191 105 6 1 183 1 172 8.45e-20 93.2
Msa0027820 AT2G27230.1 30.890 191 105 6 1 183 1 172 8.45e-20 93.2
Msa0027820 AT3G15240.2 28.571 196 88 7 5 169 34 208 7.61e-14 73.6

Find 196 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTCAGCATACTTTATTTA+AGG 0.129093 1_1:-52427435 None:intergenic
TGTATGAAATTGAGTGTTTA+AGG 0.160000 1_1:-52425652 None:intergenic
ATTTATAATAACCCTTTATT+TGG 0.175519 1_1:+52426079 Msa0027820:five_prime_UTR
GAAAGAAAGTGTAAAGTTTA+AGG 0.181871 1_1:-52425586 None:intergenic
AAAATTGTGAACTGAGTAAA+AGG 0.202438 1_1:-52425614 None:intergenic
TGGGAAGAATCACAATTATC+AGG 0.237556 1_1:-52426932 None:intergenic
CTTTAACACCCTCCAAATAA+AGG 0.255312 1_1:-52426091 None:intergenic
TGATGGACTTGTTAAATCTT+TGG 0.262539 1_1:-52428544 None:intergenic
GAAAGAAAAGCTCACTGTTT+TGG 0.264233 1_1:-52425491 None:intergenic
ATCTCGTCCGGAACATCTTT+TGG 0.269914 1_1:+52428791 Msa0027820:CDS
CTCCTAAGACTTCTTTGCTT+GGG 0.277084 1_1:-52430879 None:intergenic
TTTGGAGGGTGTTAAAGTTT+TGG 0.281930 1_1:+52426097 Msa0027820:five_prime_UTR
CTACAATATCATTATTACTA+TGG 0.303371 1_1:-52428836 None:intergenic
TATGTACATTTCTGTTGTTT+TGG 0.304838 1_1:-52430693 None:intergenic
TCTTAGTAGTTGATGCAAAT+TGG 0.311091 1_1:-52426151 None:intergenic
GGGTAGGGATAGGTTGTTAT+TGG 0.323501 1_1:+52425881 Msa0027820:five_prime_UTR
CATCATAGTTTGAGTTTGTC+AGG 0.324738 1_1:+52429002 Msa0027820:CDS
ATTGGAAGTATGCTATCTTT+TGG 0.326772 1_1:+52426193 Msa0027820:CDS
CTTCTGCTATCTCAAGAAAA+TGG 0.337897 1_1:-52430389 None:intergenic
AATTTCAAGCCCCTCGTGTT+TGG 0.340965 1_1:-52428325 None:intergenic
GTTGGACAGGTAGCTGTTAC+TGG 0.341561 1_1:+52427167 Msa0027820:CDS
CTCTGATTATCAACAACAAC+AGG 0.341637 1_1:+52430151 Msa0027820:three_prime_UTR
AGCCTTCTGAATTAATATTT+CGG 0.342951 1_1:-52428938 None:intergenic
TCTATTCGTGATCACACATT+AGG 0.346800 1_1:+52428156 Msa0027820:CDS
CTTCTTTGCTTGGGGAAAGC+AGG 0.352198 1_1:-52430870 None:intergenic
TACATAGACTGGACATCTTA+TGG 0.354256 1_1:+52430710 Msa0027820:three_prime_UTR
AATGTCCTGTTTCTACAGTA+TGG 0.360399 1_1:+52427145 Msa0027820:CDS
GAATTTGAGGTTCGAAGGTT+GGG 0.363573 1_1:+52425835 Msa0027820:five_prime_UTR
GTGTGTTACGTTTCACGCTT+TGG 0.365954 1_1:-52428197 None:intergenic
GACGGGTGAAACACTTGATA+TGG 0.366173 1_1:+52428230 Msa0027820:CDS
TCACACATCCTTTCATTTGA+AGG 0.372706 1_1:-52428429 None:intergenic
TCCCCAAGCAAAGAAGTCTT+AGG 0.374440 1_1:+52430877 Msa0027820:three_prime_UTR
CAAGATACCTTTGCTCCGTT+TGG 0.374894 1_1:-52429214 None:intergenic
TTTCTGCTTTCTCTTGCTTT+CGG 0.376048 1_1:-52425460 None:intergenic
CCGTATCATGTATATTCGTT+AGG 0.377911 1_1:+52427040 Msa0027820:CDS
AGTTGTCTGTCCCTTGGTCT+AGG 0.381960 1_1:-52429154 None:intergenic
CAGCATGCTTAGTTACGCTT+TGG 0.384514 1_1:-52429397 None:intergenic
ACTTGGTAAACACAACAATA+TGG 0.387082 1_1:-52431079 None:intergenic
TCATGAATGTGTGGTGCTCT+TGG 0.391843 1_1:-52430755 None:intergenic
GCCTTTGTTTGGATACTGAT+TGG 0.393403 1_1:+52426175 Msa0027820:CDS
ACTGATCCAAGACCGTATTA+AGG 0.395166 1_1:+52429174 Msa0027820:exon
TTTAACACCCTCCAAATAAA+GGG 0.396110 1_1:-52426090 None:intergenic
ACTACTAAGAAGCCTTTGTT+TGG 0.398957 1_1:+52426164 Msa0027820:CDS
GTAGAAAATCTTAGTAAGAA+TGG 0.406604 1_1:+52430227 Msa0027820:three_prime_UTR
TCATTATGAACAGAAACTTC+AGG 0.416026 1_1:-52428915 None:intergenic
CGTATCATGTATATTCGTTA+GGG 0.420977 1_1:+52427041 Msa0027820:CDS
TTAACTCCTTAATACGGTCT+TGG 0.421661 1_1:-52429180 None:intergenic
CCACTTGGAGTTGTTCAACT+TGG 0.421728 1_1:+52427410 Msa0027820:CDS
AGCAGAAGCCGTAAGAAGCT+TGG 0.422035 1_1:+52430404 Msa0027820:three_prime_UTR
AACTGCGCAGTTGCATCATA+TGG 0.422500 1_1:+52430109 Msa0027820:intron
GTATGAAATTGAGTGTTTAA+GGG 0.427711 1_1:-52425651 None:intergenic
ATTATTACTATGGCAAACTT+TGG 0.428962 1_1:-52428826 None:intergenic
CGTCAGTCCCAAGCTTCTTA+CGG 0.431906 1_1:-52430412 None:intergenic
TGGATCAGTTGTCTGTCCCT+TGG 0.434072 1_1:-52429160 None:intergenic
TCTCCTAAGACTTCTTTGCT+TGG 0.438240 1_1:-52430880 None:intergenic
CTTGAAATTGACAGCGATCA+AGG 0.439876 1_1:+52428339 Msa0027820:CDS
TCCAACCATACTGTAGAAAC+AGG 0.442051 1_1:-52427150 None:intergenic
TAGAAAATCTTAGTAAGAAT+GGG 0.442335 1_1:+52430228 Msa0027820:three_prime_UTR
GTTCTGAGAGCACATACTTT+GGG 0.443847 1_1:-52426951 None:intergenic
AGAATTTGAGGTTCGAAGGT+TGG 0.447143 1_1:+52425834 Msa0027820:five_prime_UTR
TACTGTAGAAACAGGACATT+AGG 0.447505 1_1:-52427142 None:intergenic
GTGGAAGAAGGTGAAGAAGA+TGG 0.448644 1_1:+52426125 Msa0027820:exon
GACGAGATTCAAAAGTCAAT+TGG 0.450977 1_1:-52428776 None:intergenic
CTAGGCCAGGTGAAAGTTGT+AGG 0.452487 1_1:+52429131 Msa0027820:CDS
TATAATAACCCTTTATTTGG+AGG 0.454693 1_1:+52426082 Msa0027820:five_prime_UTR
TGTTCTGAGAGCACATACTT+TGG 0.455292 1_1:-52426952 None:intergenic
CTTAGGAGAAGGAAACTTGT+TGG 0.456823 1_1:+52430894 Msa0027820:three_prime_UTR
CGCTTTGGATTTGACTAGGA+AGG 0.470186 1_1:-52428182 None:intergenic
TTAGGAGAAGGAAACTTGTT+GGG 0.471579 1_1:+52430895 Msa0027820:three_prime_UTR
GTTCTCTTAACTCCTTAATA+CGG 0.473917 1_1:-52429186 None:intergenic
GTTCAGAAGACCTCTCAAAC+TGG 0.474775 1_1:-52429085 None:intergenic
TTCTTTGCTTGGGGAAAGCA+GGG 0.475732 1_1:-52430869 None:intergenic
CAACAGAAATGTACATAGAC+TGG 0.476550 1_1:+52430699 Msa0027820:three_prime_UTR
GCAGAAGCCGTAAGAAGCTT+GGG 0.478373 1_1:+52430405 Msa0027820:three_prime_UTR
AGGAAATTTCAATGTGTATG+AGG 0.478639 1_1:-52428628 None:intergenic
CCGCCATTAAAACGGCGAGC+AGG 0.478662 1_1:+52425915 Msa0027820:five_prime_UTR
CATATGGAAAATGACATTCA+TGG 0.481714 1_1:+52430125 Msa0027820:three_prime_UTR
GTAACGCCCTTCCAATGTCC+TGG 0.482137 1_1:+52428252 Msa0027820:CDS
TCCTGTTTCTACAGTATGGT+TGG 0.484140 1_1:+52427149 Msa0027820:CDS
TTTCTACAGTATGGTTGGAC+AGG 0.486471 1_1:+52427154 Msa0027820:CDS
ATTGAAATTGCAAGCTTCCA+TGG 0.489226 1_1:-52425744 None:intergenic
TATTAAGGAGTTAAGAGAAC+TGG 0.491639 1_1:+52429189 Msa0027820:three_prime_UTR
AAGTGAGTGAGAGGTGTGAT+GGG 0.491855 1_1:+52425861 Msa0027820:five_prime_UTR
AGGATCCTCACCTTAAAAGA+TGG 0.491951 1_1:-52427236 None:intergenic
CGCCATTAAAACGGCGAGCA+GGG 0.495030 1_1:+52425916 Msa0027820:five_prime_UTR
ACAACAACAGGGTTCAAGTT+GGG 0.495964 1_1:+52430163 Msa0027820:three_prime_UTR
ATGTGTGAAGGGAACAATAA+TGG 0.497231 1_1:+52428444 Msa0027820:CDS
ATAGAGGAAGCTAAAGCAAA+GGG 0.498802 1_1:+52425970 Msa0027820:five_prime_UTR
TAAAACGGCGAGCAGGGTTG+AGG 0.498874 1_1:+52425922 Msa0027820:five_prime_UTR
TGGTCGGACCGCCATTAAAA+CGG 0.500559 1_1:+52425907 Msa0027820:five_prime_UTR
GAGTGAGAGGTGTGATGGGT+AGG 0.500760 1_1:+52425865 Msa0027820:five_prime_UTR
GGTAAACACAACAATATGGT+TGG 0.502494 1_1:-52431075 None:intergenic
TGGAAGAAGGTGAAGAAGAT+GGG 0.503602 1_1:+52426126 Msa0027820:exon
TACACATTGAAATTTCCTGC+TGG 0.505845 1_1:+52428633 Msa0027820:CDS
GAGACTAGGGACTAGGGACT+AGG 0.509632 1_1:+52426049 Msa0027820:five_prime_UTR
TCCTAAGACTTCTTTGCTTG+GGG 0.509756 1_1:-52430878 None:intergenic
CTTGGGGAAAGCAGGGAGGA+AGG 0.511468 1_1:-52430862 None:intergenic
TGACATCGATTGAAGCAAGA+TGG 0.514120 1_1:-52428364 None:intergenic
AAATTGTGAACTGAGTAAAA+GGG 0.516260 1_1:-52425613 None:intergenic
GAAGTGAGTGAGAGGTGTGA+TGG 0.517684 1_1:+52425860 Msa0027820:five_prime_UTR
ATCAAGTGTTTCACCCGTCA+TGG 0.518290 1_1:-52428226 None:intergenic
ATAATAACCCTTTATTTGGA+GGG 0.518524 1_1:+52426083 Msa0027820:five_prime_UTR
TTACTCTCTTTGAGAAAACC+TGG 0.521989 1_1:-52428681 None:intergenic
TTGAAGAATTTGAGGTTCGA+AGG 0.524148 1_1:+52425830 Msa0027820:five_prime_UTR
GTTGGGAGGAAGTGAGTGAG+AGG 0.526894 1_1:+52425852 Msa0027820:five_prime_UTR
CTGACAAACTCAAACTATGA+TGG 0.527690 1_1:-52429001 None:intergenic
GTGGTGGTGGGAGAGAGACT+AGG 0.528783 1_1:+52426035 Msa0027820:five_prime_UTR
GGATAGGTTGTTATTGGCAA+TGG 0.529046 1_1:+52425887 Msa0027820:five_prime_UTR
ATGTATATTCGTTAGGGGAA+GGG 0.529135 1_1:+52427047 Msa0027820:CDS
CCTAACGAATATACATGATA+CGG 0.532424 1_1:-52427040 None:intergenic
ATCATTTCCTACATCAGTGC+AGG 0.536203 1_1:+52428869 Msa0027820:CDS
GTGCAGTATTGATTCACTGT+TGG 0.539514 1_1:+52429346 Msa0027820:intron
ACTGCTTCCAAAAGATGTTC+CGG 0.539659 1_1:-52428798 None:intergenic
GGGAAGAATCACAATTATCA+GGG 0.539821 1_1:-52426931 None:intergenic
AGGAGGAAACAAGCTGGAAG+AGG 0.540000 1_1:+52425942 Msa0027820:five_prime_UTR
TAATGATATTGTAGATAATG+AGG 0.540266 1_1:+52428845 Msa0027820:CDS
ACAGGGTTCAAGTTGGGCAA+TGG 0.540297 1_1:+52430169 Msa0027820:three_prime_UTR
AGTGAGAGGTGTGATGGGTA+GGG 0.540634 1_1:+52425866 Msa0027820:five_prime_UTR
ACCTTGGAGCAGATCTATGT+TGG 0.541880 1_1:+52426974 Msa0027820:CDS
GCTGGAAGAGGGTCTTATAG+AGG 0.541887 1_1:+52425954 Msa0027820:five_prime_UTR
CATGTATATTCGTTAGGGGA+AGG 0.541965 1_1:+52427046 Msa0027820:CDS
GCAGAGAATACGAAACAAGT+AGG 0.544022 1_1:+52428399 Msa0027820:CDS
GGGAGAGAGACTAGGGACTA+GGG 0.544380 1_1:+52426043 Msa0027820:five_prime_UTR
TCAACCATCTCATATTAAAG+AGG 0.552455 1_1:+52428971 Msa0027820:CDS
AGACTAGGGACTAGGGACTA+GGG 0.553599 1_1:+52426050 Msa0027820:five_prime_UTR
AACAACAACAGGGTTCAAGT+TGG 0.556005 1_1:+52430162 Msa0027820:three_prime_UTR
ATCATAGTTTGAGTTTGTCA+GGG 0.556500 1_1:+52429003 Msa0027820:CDS
ATATCCTCTTTAATATGAGA+TGG 0.557881 1_1:-52428975 None:intergenic
TTGGGGAAAGCAGGGAGGAA+GGG 0.558206 1_1:-52430861 None:intergenic
TTACATGAAGCACTTGGACC+AGG 0.559643 1_1:+52428663 Msa0027820:CDS
TTTGAGGTTCGAAGGTTGGG+AGG 0.560314 1_1:+52425838 Msa0027820:five_prime_UTR
TGGTGGTGGGAGAGAGACTA+GGG 0.560673 1_1:+52426036 Msa0027820:five_prime_UTR
AGCAAAGAAGTCTTAGGAGA+AGG 0.561997 1_1:+52430883 Msa0027820:three_prime_UTR
GACCGAAATATTAATTCAGA+AGG 0.563885 1_1:+52428936 Msa0027820:CDS
CAAATGAAAGGATGTGTGAA+GGG 0.564926 1_1:+52428433 Msa0027820:CDS
AATTGTGAACTGAGTAAAAG+GGG 0.565128 1_1:-52425612 None:intergenic
TCAAGTTGGGCAATGGAGGT+AGG 0.566298 1_1:+52430176 Msa0027820:three_prime_UTR
TTGCTTGCAGGATCTTAACA+TGG 0.567404 1_1:+52426888 Msa0027820:intron
CAGCAAAAGAGGGCTAGGCC+AGG 0.568756 1_1:+52429118 Msa0027820:CDS
GGATGAAACCTTCAAATGAA+AGG 0.568936 1_1:+52428421 Msa0027820:CDS
AACAATTGTCTGTAAATGCA+AGG 0.574444 1_1:-52427372 None:intergenic
TCAGAAAATGACTATTGATG+TGG 0.577639 1_1:+52428302 Msa0027820:CDS
TGGGAGAGAGACTAGGGACT+AGG 0.579198 1_1:+52426042 Msa0027820:five_prime_UTR
TCATGTAACTCATAACCAGC+AGG 0.580707 1_1:-52428648 None:intergenic
AACGGCGAGCAGGGTTGAGG+AGG 0.581208 1_1:+52425925 Msa0027820:five_prime_UTR
CTAGGCCTACAACTTTCACC+TGG 0.582898 1_1:-52429136 None:intergenic
TTCACGCTTTGGATTTGACT+AGG 0.583058 1_1:-52428186 None:intergenic
AACACACAGAAAACCATGAC+GGG 0.583428 1_1:+52428213 Msa0027820:CDS
GACTGCAATAATTGAACAAG+CGG 0.583493 1_1:-52430733 None:intergenic
GGGTTCAAGTTGGGCAATGG+AGG 0.584395 1_1:+52430172 Msa0027820:three_prime_UTR
GAGGTGTGATGGGTAGGGAT+AGG 0.587096 1_1:+52425871 Msa0027820:five_prime_UTR
GGGTTGAGGAGGAAACAAGC+TGG 0.587284 1_1:+52425936 Msa0027820:five_prime_UTR
TCAAATGAAAGGATGTGTGA+AGG 0.588450 1_1:+52428432 Msa0027820:CDS
TAACGCCCTTCCAATGTCCT+GGG 0.589847 1_1:+52428253 Msa0027820:CDS
TATAGAGGAAGCTAAAGCAA+AGG 0.591156 1_1:+52425969 Msa0027820:five_prime_UTR
CAGAGAATACGAAACAAGTA+GGG 0.591572 1_1:+52428400 Msa0027820:CDS
CTGTTGTTGTTGATAATCAG+AGG 0.593214 1_1:-52430150 None:intergenic
TTAAGAGAACTGGTGCCAAA+CGG 0.593259 1_1:+52429199 Msa0027820:three_prime_UTR
ATTGTGTCCTGCACTGATGT+AGG 0.598822 1_1:-52428876 None:intergenic
TTAGCTTATATCTGAAGACA+TGG 0.601138 1_1:-52425703 None:intergenic
AGGTTGTTATTGGCAATGGT+CGG 0.602507 1_1:+52425891 Msa0027820:five_prime_UTR
ACTGGTGCCAAACGGAGCAA+AGG 0.604316 1_1:+52429207 Msa0027820:three_prime_UTR
AAATTGATATCAAAATGCTA+AGG 0.610506 1_1:-52430936 None:intergenic
TATGAGTTACATGAAGCACT+TGG 0.610930 1_1:+52428657 Msa0027820:CDS
TATTGATGTGGCCAAACACG+AGG 0.617153 1_1:+52428314 Msa0027820:CDS
TCCAATCAGTATCCAAACAA+AGG 0.620757 1_1:-52426176 None:intergenic
TTGAGTTTGTCAGGGATCTG+CGG 0.621537 1_1:+52429011 Msa0027820:CDS
TGCTTGCAGGATCTTAACAT+GGG 0.623411 1_1:+52426889 Msa0027820:intron
GGAGGAAACAAGCTGGAAGA+GGG 0.623624 1_1:+52425943 Msa0027820:five_prime_UTR
AAAGTTGTAGGCCTAGACCA+AGG 0.627816 1_1:+52429143 Msa0027820:CDS
TACATCAGTGCAGGACACAA+TGG 0.629927 1_1:+52428878 Msa0027820:CDS
AATGCAGGTTGGTGAAGACA+TGG 0.636281 1_1:+52428101 Msa0027820:intron
AACTGGTTACTACACGAGCT+AGG 0.639086 1_1:-52429068 None:intergenic
GAATGGGCAGATGCTTGTTG+AGG 0.640182 1_1:+52430244 Msa0027820:three_prime_UTR
GTCGTAGCAGTACTACCACT+TGG 0.641686 1_1:+52427395 Msa0027820:CDS
TTGCAGGATCTTAACATGGG+AGG 0.641807 1_1:+52426892 Msa0027820:intron
CTGTTACTGGAAAACATCAG+TGG 0.641892 1_1:+52427180 Msa0027820:CDS
TCCAACATAGATCTGCTCCA+AGG 0.643426 1_1:-52426975 None:intergenic
AGTTGGGCAATGGAGGTAGG+AGG 0.643833 1_1:+52430179 Msa0027820:three_prime_UTR
CGTGTAGTAACCAGTTTGAG+AGG 0.651078 1_1:+52429075 Msa0027820:CDS
AAGTTGTAGGCCTAGACCAA+GGG 0.652681 1_1:+52429144 Msa0027820:CDS
TCGCAACAGATAATCCTAGA+GGG 0.655424 1_1:-52427012 None:intergenic
TTCGCAACAGATAATCCTAG+AGG 0.664107 1_1:-52427013 None:intergenic
TAACACACAGAAAACCATGA+CGG 0.666602 1_1:+52428212 Msa0027820:CDS
TGCAGGTTGGTGAAGACATG+GGG 0.669819 1_1:+52428103 Msa0027820:intron
ATGCAGGTTGGTGAAGACAT+GGG 0.672643 1_1:+52428102 Msa0027820:intron
ATTGATGTGGCCAAACACGA+GGG 0.677054 1_1:+52428315 Msa0027820:CDS
AAACATTTATCATGAATGTG+TGG 0.685784 1_1:-52430764 None:intergenic
CCAAGTTGAACAACTCCAAG+TGG 0.686515 1_1:-52427410 None:intergenic
TTTGCTTGGGGAAAGCAGGG+AGG 0.694219 1_1:-52430866 None:intergenic
TTGATGTGGCCAAACACGAG+GGG 0.694860 1_1:+52428316 Msa0027820:CDS
TATGTGCTCTCAGAACACCT+TGG 0.696188 1_1:+52426958 Msa0027820:CDS
CATGCTACAGATGCTCTGTG+AGG 0.715737 1_1:+52430359 Msa0027820:intron
GTATCATGTATATTCGTTAG+GGG 0.726980 1_1:+52427042 Msa0027820:CDS
TCTGATTATCAACAACAACA+GGG 0.741738 1_1:+52430152 Msa0027820:three_prime_UTR
AACGGTGCAAGTGAAGCTCG+TGG 0.750508 1_1:+52430441 Msa0027820:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACATTATAAAGAATAA+TGG - chr1_1:52427541-52427560 None:intergenic 10.0%
!! ATATTTGACATAAAATATAA+AGG + chr1_1:52427832-52427851 Msa0027820:intron 10.0%
!! ATTGATGTTTATAAAATTAA+GGG - chr1_1:52429936-52429955 None:intergenic 10.0%
!! TATTGATGTTTATAAAATTA+AGG - chr1_1:52429937-52429956 None:intergenic 10.0%
!!! CAAAGATTATATAAATTTTC+TGG + chr1_1:52425536-52425555 Msa0027820:five_prime_UTR 15.0%
!!! AAAATTGTATTTTTAATCCA+TGG + chr1_1:52425727-52425746 Msa0027820:five_prime_UTR 15.0%
!! ATTTATAATAACCCTTTATT+TGG + chr1_1:52426079-52426098 Msa0027820:five_prime_UTR 15.0%
!! TTCTTAATTCAATATCTAAA+AGG - chr1_1:52426455-52426474 None:intergenic 15.0%
!!! TTTTAGATATTGAATTAAGA+AGG + chr1_1:52426454-52426473 Msa0027820:intron 15.0%
!! TTTAGATATTGAATTAAGAA+GGG + chr1_1:52426455-52426474 Msa0027820:intron 15.0%
!! AAGAAATTTAAGCATTAAAA+GGG - chr1_1:52427476-52427495 None:intergenic 15.0%
!! AATTAGGAGATTATATAAAT+GGG - chr1_1:52427639-52427658 None:intergenic 15.0%
!! AAATTAGGAGATTATATAAA+TGG - chr1_1:52427640-52427659 None:intergenic 15.0%
!! TTTATATAATCTCCTAATTT+CGG + chr1_1:52427640-52427659 Msa0027820:intron 15.0%
!! TTTGCTTATTATGTATAATA+AGG - chr1_1:52427716-52427735 None:intergenic 15.0%
!!! TATGTCAAATATATTAGTTT+TGG - chr1_1:52427824-52427843 None:intergenic 15.0%
!!! AATGCCATTATTTTATTATT+GGG - chr1_1:52429535-52429554 None:intergenic 15.0%
!!! AAATGCCATTATTTTATTAT+TGG - chr1_1:52429536-52429555 None:intergenic 15.0%
!!! AATTTTCAAAACATTGTTTT+CGG - chr1_1:52429825-52429844 None:intergenic 15.0%
!! TAATAATAACATAGAAGTAA+TGG + chr1_1:52430562-52430581 Msa0027820:intron 15.0%
!!! TATTTTTGAAAATTCTCATC+TGG + chr1_1:52425675-52425694 Msa0027820:five_prime_UTR 20.0%
!!! ATTTTTGAAAATTCTCATCT+GGG + chr1_1:52425676-52425695 Msa0027820:five_prime_UTR 20.0%
!!! AGAATTTTTTGAAGAATTTG+AGG + chr1_1:52425822-52425841 Msa0027820:five_prime_UTR 20.0%
!! AAACATTATGGAAATTAGAA+AGG - chr1_1:52426360-52426379 None:intergenic 20.0%
!!! TCAAGAATCAATTTTAGATT+TGG + chr1_1:52426491-52426510 Msa0027820:intron 20.0%
!!! CAATTTTAGATTTGGTTTTA+AGG + chr1_1:52426499-52426518 Msa0027820:intron 20.0%
!! CATATGAAATTTAACTCATT+GGG - chr1_1:52426836-52426855 None:intergenic 20.0%
!! ACATATGAAATTTAACTCAT+TGG - chr1_1:52426837-52426856 None:intergenic 20.0%
!!! CTTATCTTAACATGTTTTAT+TGG + chr1_1:52426857-52426876 Msa0027820:intron 20.0%
!! CAAGAAATTTAAGCATTAAA+AGG - chr1_1:52427477-52427496 None:intergenic 20.0%
!!! TAAAGGCATATAATTTTTAG+TGG + chr1_1:52427849-52427868 Msa0027820:intron 20.0%
!! ATGTAGTTGAATAAATTTGA+CGG + chr1_1:52427984-52428003 Msa0027820:intron 20.0%
!!! ATTAACATTTTGCTAACAAA+TGG - chr1_1:52428055-52428074 None:intergenic 20.0%
!!! AAGAGAGTAAATATTTTGAT+TGG + chr1_1:52428694-52428713 Msa0027820:CDS 20.0%
!! CTACAATATCATTATTACTA+TGG - chr1_1:52428839-52428858 None:intergenic 20.0%
!! TAATGATATTGTAGATAATG+AGG + chr1_1:52428845-52428864 Msa0027820:CDS 20.0%
!!! ATTTTCTAAAACAAAGACAA+AGG + chr1_1:52429433-52429452 Msa0027820:three_prime_UTR 20.0%
!! TCTTCCCAATAATAAAATAA+TGG + chr1_1:52429528-52429547 Msa0027820:intron 20.0%
!! AAACATCAATAAGTATGAAA+TGG + chr1_1:52429946-52429965 Msa0027820:intron 20.0%
!! TAGAAAATCTTAGTAAGAAT+GGG + chr1_1:52430228-52430247 Msa0027820:three_prime_UTR 20.0%
!! AAATTGATATCAAAATGCTA+AGG - chr1_1:52430939-52430958 None:intergenic 20.0%
!!! GCATTTTGATATCAATTTAA+TGG + chr1_1:52430941-52430960 Msa0027820:three_prime_UTR 20.0%
!!! TTTTGATATCAATTTAATGG+AGG + chr1_1:52430944-52430963 Msa0027820:three_prime_UTR 20.0%
!! AACACAAAAAGACAAAATAA+TGG - chr1_1:52430989-52431008 None:intergenic 20.0%
!!! TTGTCTTTTTGTGTTTATAT+TGG + chr1_1:52430994-52431013 Msa0027820:three_prime_UTR 20.0%
!! GAAAGAAAGTGTAAAGTTTA+AGG - chr1_1:52425589-52425608 None:intergenic 25.0%
! AAATTGTGAACTGAGTAAAA+GGG - chr1_1:52425616-52425635 None:intergenic 25.0%
! AAAATTGTGAACTGAGTAAA+AGG - chr1_1:52425617-52425636 None:intergenic 25.0%
! GTATGAAATTGAGTGTTTAA+GGG - chr1_1:52425654-52425673 None:intergenic 25.0%
! TGTATGAAATTGAGTGTTTA+AGG - chr1_1:52425655-52425674 None:intergenic 25.0%
!!! AATGCTTGTGATAGTTTTAT+TGG + chr1_1:52425764-52425783 Msa0027820:five_prime_UTR 25.0%
!!! TTTGTTGCTTTTTTTGTTGT+TGG + chr1_1:52425995-52426014 Msa0027820:five_prime_UTR 25.0%
!!! TTGTTGGTTTCTTTTTTTGA+GGG + chr1_1:52426011-52426030 Msa0027820:five_prime_UTR 25.0%
!! TATAATAACCCTTTATTTGG+AGG + chr1_1:52426082-52426101 Msa0027820:five_prime_UTR 25.0%
!! ATAATAACCCTTTATTTGGA+GGG + chr1_1:52426083-52426102 Msa0027820:five_prime_UTR 25.0%
!!! TGTTAAAGTTTTGGTTTTTG+TGG + chr1_1:52426106-52426125 Msa0027820:five_prime_UTR 25.0%
! ATGAAAATCAGCAAACATTA+TGG - chr1_1:52426372-52426391 None:intergenic 25.0%
! CTGATACCAACTAAAAATTT+GGG - chr1_1:52426687-52426706 None:intergenic 25.0%
! TCTGATACCAACTAAAAATT+TGG - chr1_1:52426688-52426707 None:intergenic 25.0%
! TTTAATCTTAAACTGCATCT+AGG - chr1_1:52427099-52427118 None:intergenic 25.0%
!!! AATTTCTAGTCCATCTTTTA+AGG + chr1_1:52427226-52427245 Msa0027820:CDS 25.0%
!! TAGTCAGCATACTTTATTTA+AGG - chr1_1:52427438-52427457 None:intergenic 25.0%
!! GTTTTTACACAATTCAGTTA+TGG + chr1_1:52428509-52428528 Msa0027820:CDS 25.0%
!!! GAGTAAATATTTTGATTGGA+CGG + chr1_1:52428698-52428717 Msa0027820:CDS 25.0%
! ATTATTACTATGGCAAACTT+TGG - chr1_1:52428829-52428848 None:intergenic 25.0%
! AGCCTTCTGAATTAATATTT+CGG - chr1_1:52428941-52428960 None:intergenic 25.0%
! ATATCCTCTTTAATATGAGA+TGG - chr1_1:52428978-52428997 None:intergenic 25.0%
!! ATGTAGAAGAAAAACTTTTG+GGG - chr1_1:52429046-52429065 None:intergenic 25.0%
!! CATGTAGAAGAAAAACTTTT+GGG - chr1_1:52429047-52429066 None:intergenic 25.0%
!! ACATGTAGAAGAAAAACTTT+TGG - chr1_1:52429048-52429067 None:intergenic 25.0%
!!! ATTACATACATTGATTTGAG+TGG + chr1_1:52429585-52429604 Msa0027820:intron 25.0%
!! AGTTAGAGAAAATGCATTTT+TGG + chr1_1:52429794-52429813 Msa0027820:intron 25.0%
! TCAGTGAAAATAGAAACAAA+CGG + chr1_1:52429909-52429928 Msa0027820:intron 25.0%
! CTCATTGTAAAATTGTTGTA+GGG - chr1_1:52430035-52430054 None:intergenic 25.0%
!! ATACTGAATGAATTTTCAGA+TGG - chr1_1:52430205-52430224 None:intergenic 25.0%
! GTAGAAAATCTTAGTAAGAA+TGG + chr1_1:52430227-52430246 Msa0027820:three_prime_UTR 25.0%
!! TCTAGAAAGAGTATATGTAA+AGG - chr1_1:52430293-52430312 None:intergenic 25.0%
! CGTAAAACTATTATGCATTA+TGG + chr1_1:52430617-52430636 Msa0027820:intron 25.0%
!!! TATGTACATTTCTGTTGTTT+TGG - chr1_1:52430696-52430715 None:intergenic 25.0%
! AAACATTTATCATGAATGTG+TGG - chr1_1:52430767-52430786 None:intergenic 25.0%
!! TTTTAAACTCACTAAAGACT+TGG - chr1_1:52431099-52431118 None:intergenic 25.0%
AATTGTGAACTGAGTAAAAG+GGG - chr1_1:52425615-52425634 None:intergenic 30.0%
TTAGCTTATATCTGAAGACA+TGG - chr1_1:52425706-52425725 None:intergenic 30.0%
!!! GTTGTTGGTTTCTTTTTTTG+AGG + chr1_1:52426010-52426029 Msa0027820:five_prime_UTR 30.0%
!!! TGTTGGTTTCTTTTTTTGAG+GGG + chr1_1:52426012-52426031 Msa0027820:five_prime_UTR 30.0%
TTTAACACCCTCCAAATAAA+GGG - chr1_1:52426093-52426112 None:intergenic 30.0%
! TCTTAGTAGTTGATGCAAAT+TGG - chr1_1:52426154-52426173 None:intergenic 30.0%
!! ATTGGAAGTATGCTATCTTT+TGG + chr1_1:52426193-52426212 Msa0027820:CDS 30.0%
!!! TGCTGATTTTCATGTTATAG+AGG + chr1_1:52426379-52426398 Msa0027820:intron 30.0%
TTCATGTTATAGAGGTTTCT+TGG + chr1_1:52426387-52426406 Msa0027820:intron 30.0%
ATATTGAATTAAGAAGGGCA+TGG + chr1_1:52426460-52426479 Msa0027820:intron 30.0%
! TGTTCTACAAGCATTTTGTT+TGG + chr1_1:52426532-52426551 Msa0027820:intron 30.0%
CGTCAAAATGAGTTTAGAAA+CGG + chr1_1:52426615-52426634 Msa0027820:intron 30.0%
GTCAAAATGAGTTTAGAAAC+GGG + chr1_1:52426616-52426635 Msa0027820:intron 30.0%
TCAAAATGAGTTTAGAAACG+GGG + chr1_1:52426617-52426636 Msa0027820:intron 30.0%
TACCAACTAAAAATTTGGGT+TGG - chr1_1:52426683-52426702 None:intergenic 30.0%
!! CTTGCATTTGTTATGTTGTT+AGG + chr1_1:52426794-52426813 Msa0027820:intron 30.0%
!! CTTAACATGTTTTATTGGTG+TGG + chr1_1:52426862-52426881 Msa0027820:intron 30.0%
CCTAACGAATATACATGATA+CGG - chr1_1:52427043-52427062 None:intergenic 30.0%
CGTATCATGTATATTCGTTA+GGG + chr1_1:52427041-52427060 Msa0027820:CDS 30.0%
GTATCATGTATATTCGTTAG+GGG + chr1_1:52427042-52427061 Msa0027820:CDS 30.0%
AGTTGCATCATTGAAGAATA+AGG - chr1_1:52427259-52427278 None:intergenic 30.0%
TCCTGTATAGTAAGATTTGA+AGG + chr1_1:52427288-52427307 Msa0027820:intron 30.0%
AACAATTGTCTGTAAATGCA+AGG - chr1_1:52427375-52427394 None:intergenic 30.0%
TTTAAGCATTAAAAGGGACA+AGG - chr1_1:52427470-52427489 None:intergenic 30.0%
ATGTATAATAAGGACTGACA+GGG - chr1_1:52427706-52427725 None:intergenic 30.0%
TATGTATAATAAGGACTGAC+AGG - chr1_1:52427707-52427726 None:intergenic 30.0%
TAGCATGTAATTATTGTGCT+CGG + chr1_1:52427948-52427967 Msa0027820:intron 30.0%
!! TGACGGATTGTATAATAGTT+TGG + chr1_1:52428001-52428020 Msa0027820:intron 30.0%
!! GTCATTTTCTGATAAACAGT+AGG - chr1_1:52428294-52428313 None:intergenic 30.0%
TCAGAAAATGACTATTGATG+TGG + chr1_1:52428302-52428321 Msa0027820:CDS 30.0%
!! TGATGGACTTGTTAAATCTT+TGG - chr1_1:52428547-52428566 None:intergenic 30.0%
AGGAAATTTCAATGTGTATG+AGG - chr1_1:52428631-52428650 None:intergenic 30.0%
TCATTATGAACAGAAACTTC+AGG - chr1_1:52428918-52428937 None:intergenic 30.0%
GACCGAAATATTAATTCAGA+AGG + chr1_1:52428936-52428955 Msa0027820:CDS 30.0%
TCAACCATCTCATATTAAAG+AGG + chr1_1:52428971-52428990 Msa0027820:CDS 30.0%
! ATCATAGTTTGAGTTTGTCA+GGG + chr1_1:52429003-52429022 Msa0027820:CDS 30.0%
! TGTAGAAGAAAAACTTTTGG+GGG - chr1_1:52429045-52429064 None:intergenic 30.0%
CATCTAAAAACAGCAAAAGA+GGG + chr1_1:52429108-52429127 Msa0027820:CDS 30.0%
GTTCTCTTAACTCCTTAATA+CGG - chr1_1:52429189-52429208 None:intergenic 30.0%
TATTAAGGAGTTAAGAGAAC+TGG + chr1_1:52429189-52429208 Msa0027820:three_prime_UTR 30.0%
!! TGCTTGTTCAATTGCTATTT+AGG + chr1_1:52429488-52429507 Msa0027820:intron 30.0%
!! ACATTGATTTGAGTGGAATT+AGG + chr1_1:52429592-52429611 Msa0027820:intron 30.0%
GTGATAACTAATGTTCATCA+AGG - chr1_1:52429671-52429690 None:intergenic 30.0%
CTTAACTGTGATAGAGAATA+TGG + chr1_1:52429766-52429785 Msa0027820:intron 30.0%
CCTCATTGTAAAATTGTTGT+AGG - chr1_1:52430036-52430055 None:intergenic 30.0%
! CCTACAACAATTTTACAATG+AGG + chr1_1:52430033-52430052 Msa0027820:intron 30.0%
CATATGGAAAATGACATTCA+TGG + chr1_1:52430125-52430144 Msa0027820:three_prime_UTR 30.0%
TCTGATTATCAACAACAACA+GGG + chr1_1:52430152-52430171 Msa0027820:three_prime_UTR 30.0%
! ATTCATGATAATGAGCGTAA+GGG - chr1_1:52430339-52430358 None:intergenic 30.0%
ACTTGGTAAACACAACAATA+TGG - chr1_1:52431082-52431101 None:intergenic 30.0%
TTTCTGCTTTCTCTTGCTTT+CGG - chr1_1:52425463-52425482 None:intergenic 35.0%
! GAAAGAAAAGCTCACTGTTT+TGG - chr1_1:52425494-52425513 None:intergenic 35.0%
ATTGAAATTGCAAGCTTCCA+TGG - chr1_1:52425747-52425766 None:intergenic 35.0%
! TTGAAGAATTTGAGGTTCGA+AGG + chr1_1:52425830-52425849 Msa0027820:five_prime_UTR 35.0%
TATAGAGGAAGCTAAAGCAA+AGG + chr1_1:52425969-52425988 Msa0027820:five_prime_UTR 35.0%
ATAGAGGAAGCTAAAGCAAA+GGG + chr1_1:52425970-52425989 Msa0027820:five_prime_UTR 35.0%
!!! GTTGGTTTCTTTTTTTGAGG+GGG + chr1_1:52426013-52426032 Msa0027820:five_prime_UTR 35.0%
CTTTAACACCCTCCAAATAA+AGG - chr1_1:52426094-52426113 None:intergenic 35.0%
!!! TTTGGAGGGTGTTAAAGTTT+TGG + chr1_1:52426097-52426116 Msa0027820:five_prime_UTR 35.0%
!!! GTTTTGGTTTTTGTGGAAGA+AGG + chr1_1:52426113-52426132 Msa0027820:five_prime_UTR 35.0%
ACTACTAAGAAGCCTTTGTT+TGG + chr1_1:52426164-52426183 Msa0027820:CDS 35.0%
TCCAATCAGTATCCAAACAA+AGG - chr1_1:52426179-52426198 None:intergenic 35.0%
! TATAGAGGTTTCTTGGTGAT+TGG + chr1_1:52426394-52426413 Msa0027820:intron 35.0%
!! ATTTTGACGTCATGTCTGAT+TGG - chr1_1:52426604-52426623 None:intergenic 35.0%
!!! ACCTTACAAGTTGGTTTTGT+GGG + chr1_1:52426646-52426665 Msa0027820:intron 35.0%
AGAGCCTATTCAATATCTGT+TGG + chr1_1:52426705-52426724 Msa0027820:intron 35.0%
GAGCCTATTCAATATCTGTT+GGG + chr1_1:52426706-52426725 Msa0027820:intron 35.0%
TTATGTCAAGACTTGACATC+TGG - chr1_1:52426763-52426782 None:intergenic 35.0%
GGGAAGAATCACAATTATCA+GGG - chr1_1:52426934-52426953 None:intergenic 35.0%
TGGGAAGAATCACAATTATC+AGG - chr1_1:52426935-52426954 None:intergenic 35.0%
CCGTATCATGTATATTCGTT+AGG + chr1_1:52427040-52427059 Msa0027820:CDS 35.0%
ATGTATATTCGTTAGGGGAA+GGG + chr1_1:52427047-52427066 Msa0027820:CDS 35.0%
TACTGTAGAAACAGGACATT+AGG - chr1_1:52427145-52427164 None:intergenic 35.0%
!! AATGTCCTGTTTCTACAGTA+TGG + chr1_1:52427145-52427164 Msa0027820:CDS 35.0%
TCAATGATGCAACTTGCATT+TGG + chr1_1:52427265-52427284 Msa0027820:intron 35.0%
GCCTTCAAATCTTACTATAC+AGG - chr1_1:52427292-52427311 None:intergenic 35.0%
! AAGATTTGAAGGCGTGTAAT+TGG + chr1_1:52427299-52427318 Msa0027820:intron 35.0%
TCCTAATTTCGGTAATTGCT+TGG + chr1_1:52427651-52427670 Msa0027820:intron 35.0%
ACCAAGCAATTACCGAAATT+AGG - chr1_1:52427655-52427674 None:intergenic 35.0%
TAATTTCGGTAATTGCTTGG+TGG + chr1_1:52427654-52427673 Msa0027820:intron 35.0%
TCTATTCGTGATCACACATT+AGG + chr1_1:52428156-52428175 Msa0027820:CDS 35.0%
TAACACACAGAAAACCATGA+CGG + chr1_1:52428212-52428231 Msa0027820:CDS 35.0%
CAGAGAATACGAAACAAGTA+GGG + chr1_1:52428400-52428419 Msa0027820:CDS 35.0%
GGATGAAACCTTCAAATGAA+AGG + chr1_1:52428421-52428440 Msa0027820:CDS 35.0%
TCACACATCCTTTCATTTGA+AGG - chr1_1:52428432-52428451 None:intergenic 35.0%
TCAAATGAAAGGATGTGTGA+AGG + chr1_1:52428432-52428451 Msa0027820:CDS 35.0%
CAAATGAAAGGATGTGTGAA+GGG + chr1_1:52428433-52428452 Msa0027820:CDS 35.0%
ATGTGTGAAGGGAACAATAA+TGG + chr1_1:52428444-52428463 Msa0027820:CDS 35.0%
! AACGATGAGACATTTTTGTC+TGG - chr1_1:52428492-52428511 None:intergenic 35.0%
! TCAGCTTCTACATTTTCTGA+TGG - chr1_1:52428564-52428583 None:intergenic 35.0%
TACACATTGAAATTTCCTGC+TGG + chr1_1:52428633-52428652 Msa0027820:CDS 35.0%
! TATGAGTTACATGAAGCACT+TGG + chr1_1:52428657-52428676 Msa0027820:CDS 35.0%
! TTACTCTCTTTGAGAAAACC+TGG - chr1_1:52428684-52428703 None:intergenic 35.0%
!!! TATTTTGATTGGACGGTACA+AGG + chr1_1:52428705-52428724 Msa0027820:CDS 35.0%
GACGAGATTCAAAAGTCAAT+TGG - chr1_1:52428779-52428798 None:intergenic 35.0%
!! ATTGACTTTTGAATCTCGTC+CGG + chr1_1:52428779-52428798 Msa0027820:CDS 35.0%
CTGACAAACTCAAACTATGA+TGG - chr1_1:52429004-52429023 None:intergenic 35.0%
! CATCATAGTTTGAGTTTGTC+AGG + chr1_1:52429002-52429021 Msa0027820:CDS 35.0%
!!! CCTCTTTTGCTGTTTTTAGA+TGG - chr1_1:52429110-52429129 None:intergenic 35.0%
CCATCTAAAAACAGCAAAAG+AGG + chr1_1:52429107-52429126 Msa0027820:CDS 35.0%
TTAACTCCTTAATACGGTCT+TGG - chr1_1:52429183-52429202 None:intergenic 35.0%
! TTTTCTAATCCTGTCTCAGT+AGG + chr1_1:52429250-52429269 Msa0027820:intron 35.0%
!!! AGGCTTTGGTTTTTTGATAG+CGG + chr1_1:52429270-52429289 Msa0027820:intron 35.0%
ACTTGTAGTTCCAATTCTTG+TGG + chr1_1:52429296-52429315 Msa0027820:intron 35.0%
AGACAAAGGTAACGTCTTAT+TGG + chr1_1:52429447-52429466 Msa0027820:intron 35.0%
TTAGTTATCACTGAAGCCAA+TGG + chr1_1:52429680-52429699 Msa0027820:intron 35.0%
!! CTGTTGTTGTTGATAATCAG+AGG - chr1_1:52430153-52430172 None:intergenic 35.0%
CTCTGATTATCAACAACAAC+AGG + chr1_1:52430151-52430170 Msa0027820:three_prime_UTR 35.0%
! GATTCATGATAATGAGCGTA+AGG - chr1_1:52430340-52430359 None:intergenic 35.0%
CTTCTGCTATCTCAAGAAAA+TGG - chr1_1:52430392-52430411 None:intergenic 35.0%
CAACAGAAATGTACATAGAC+TGG + chr1_1:52430699-52430718 Msa0027820:three_prime_UTR 35.0%
TACATAGACTGGACATCTTA+TGG + chr1_1:52430710-52430729 Msa0027820:three_prime_UTR 35.0%
GACTGCAATAATTGAACAAG+CGG - chr1_1:52430736-52430755 None:intergenic 35.0%
! TTAGGAGAAGGAAACTTGTT+GGG + chr1_1:52430895-52430914 Msa0027820:three_prime_UTR 35.0%
GGTAAACACAACAATATGGT+TGG - chr1_1:52431078-52431097 None:intergenic 35.0%
! AGAATTTGAGGTTCGAAGGT+TGG + chr1_1:52425834-52425853 Msa0027820:five_prime_UTR 40.0%
! GAATTTGAGGTTCGAAGGTT+GGG + chr1_1:52425835-52425854 Msa0027820:five_prime_UTR 40.0%
! GGATAGGTTGTTATTGGCAA+TGG + chr1_1:52425887-52425906 Msa0027820:five_prime_UTR 40.0%
! AGGTTGTTATTGGCAATGGT+CGG + chr1_1:52425891-52425910 Msa0027820:five_prime_UTR 40.0%
TGGAAGAAGGTGAAGAAGAT+GGG + chr1_1:52426126-52426145 Msa0027820:exon 40.0%
! GCCTTTGTTTGGATACTGAT+TGG + chr1_1:52426175-52426194 Msa0027820:CDS 40.0%
CAACGTTGTGCTAGAATGTA+TGG + chr1_1:52426222-52426241 Msa0027820:intron 40.0%
!!! CACCTTACAAGTTGGTTTTG+TGG + chr1_1:52426645-52426664 Msa0027820:intron 40.0%
!!! CCTTACAAGTTGGTTTTGTG+GGG + chr1_1:52426647-52426666 Msa0027820:intron 40.0%
!!! GGCCAACCCAAATTTTTAGT+TGG + chr1_1:52426678-52426697 Msa0027820:intron 40.0%
TGGCCCAACAGATATTGAAT+AGG - chr1_1:52426712-52426731 None:intergenic 40.0%
TTGCTTGCAGGATCTTAACA+TGG + chr1_1:52426888-52426907 Msa0027820:intron 40.0%
TGCTTGCAGGATCTTAACAT+GGG + chr1_1:52426889-52426908 Msa0027820:intron 40.0%
!! GTTCTGAGAGCACATACTTT+GGG - chr1_1:52426954-52426973 None:intergenic 40.0%
!! TGTTCTGAGAGCACATACTT+TGG - chr1_1:52426955-52426974 None:intergenic 40.0%
! GATTTTTCACATGACCCTCT+AGG + chr1_1:52426998-52427017 Msa0027820:CDS 40.0%
TCGCAACAGATAATCCTAGA+GGG - chr1_1:52427015-52427034 None:intergenic 40.0%
TTCGCAACAGATAATCCTAG+AGG - chr1_1:52427016-52427035 None:intergenic 40.0%
CATGTATATTCGTTAGGGGA+AGG + chr1_1:52427046-52427065 Msa0027820:CDS 40.0%
!! TCCTGTTTCTACAGTATGGT+TGG + chr1_1:52427149-52427168 Msa0027820:CDS 40.0%
TCCAACCATACTGTAGAAAC+AGG - chr1_1:52427153-52427172 None:intergenic 40.0%
TTTCTACAGTATGGTTGGAC+AGG + chr1_1:52427154-52427173 Msa0027820:CDS 40.0%
CTGTTACTGGAAAACATCAG+TGG + chr1_1:52427180-52427199 Msa0027820:CDS 40.0%
!!! CTAGTCCATCTTTTAAGGTG+AGG + chr1_1:52427231-52427250 Msa0027820:intron 40.0%
AGGATCCTCACCTTAAAAGA+TGG - chr1_1:52427239-52427258 None:intergenic 40.0%
TGTGAATGTTGTTGCCAATG+CGG + chr1_1:52427502-52427521 Msa0027820:intron 40.0%
! GATTCTCTTTTGAACCGCAT+TGG - chr1_1:52427519-52427538 None:intergenic 40.0%
! ATGTAAGGCTTGGTAAGTCA+GGG - chr1_1:52427907-52427926 None:intergenic 40.0%
CATTTGCCTGTCAACATGTA+AGG - chr1_1:52427922-52427941 None:intergenic 40.0%
GCATTCACAGATGACAGAAA+AGG - chr1_1:52428086-52428105 None:intergenic 40.0%
TTTCTGTCATCTGTGAATGC+AGG + chr1_1:52428086-52428105 Msa0027820:intron 40.0%
! TTCACGCTTTGGATTTGACT+AGG - chr1_1:52428189-52428208 None:intergenic 40.0%
AACACACAGAAAACCATGAC+GGG + chr1_1:52428213-52428232 Msa0027820:CDS 40.0%
! AATAGCTTTTCCCAGGACAT+TGG - chr1_1:52428266-52428285 None:intergenic 40.0%
CTTGAAATTGACAGCGATCA+AGG + chr1_1:52428339-52428358 Msa0027820:CDS 40.0%
! TGACATCGATTGAAGCAAGA+TGG - chr1_1:52428367-52428386 None:intergenic 40.0%
GCAGAGAATACGAAACAAGT+AGG + chr1_1:52428399-52428418 Msa0027820:CDS 40.0%
GGTATCCTCGTAAAAAGACT+CGG - chr1_1:52428610-52428629 None:intergenic 40.0%
TCATGTAACTCATAACCAGC+AGG - chr1_1:52428651-52428670 None:intergenic 40.0%
ACTGCTTCCAAAAGATGTTC+CGG - chr1_1:52428801-52428820 None:intergenic 40.0%
ATCATTTCCTACATCAGTGC+AGG + chr1_1:52428869-52428888 Msa0027820:CDS 40.0%
AAAAACAGCAAAAGAGGGCT+AGG + chr1_1:52429113-52429132 Msa0027820:CDS 40.0%
ACTGATCCAAGACCGTATTA+AGG + chr1_1:52429174-52429193 Msa0027820:exon 40.0%
! TTAAGAGAACTGGTGCCAAA+CGG + chr1_1:52429199-52429218 Msa0027820:three_prime_UTR 40.0%
AAACCTTCAGCCACAAGAAT+TGG - chr1_1:52429309-52429328 None:intergenic 40.0%
!! GTGCAGTATTGATTCACTGT+TGG + chr1_1:52429346-52429365 Msa0027820:intron 40.0%
!! ACGTCTTATTGGCTTTGAGA+TGG + chr1_1:52429458-52429477 Msa0027820:intron 40.0%
! GAGTGGAATTAGGCTTTGAT+CGG + chr1_1:52429602-52429621 Msa0027820:intron 40.0%
! TTTAAGCTTTGTGAGTAGCC+AGG + chr1_1:52429643-52429662 Msa0027820:intron 40.0%
CTAATGTTCATCAAGGAACC+TGG - chr1_1:52429664-52429683 None:intergenic 40.0%
AATGAAATTCCAGCTACCCT+GGG - chr1_1:52429731-52429750 None:intergenic 40.0%
AAATGAAATTCCAGCTACCC+TGG - chr1_1:52429732-52429751 None:intergenic 40.0%
AGGGTAGCTGGAATTTCATT+TGG + chr1_1:52429731-52429750 Msa0027820:intron 40.0%
AACAACAACAGGGTTCAAGT+TGG + chr1_1:52430162-52430181 Msa0027820:three_prime_UTR 40.0%
! ACAACAACAGGGTTCAAGTT+GGG + chr1_1:52430163-52430182 Msa0027820:three_prime_UTR 40.0%
! TTGGGACTGACGATTTTGAA+CGG + chr1_1:52430423-52430442 Msa0027820:three_prime_UTR 40.0%
! GAAGACATGCATGTGTTTTG+TGG + chr1_1:52430467-52430486 Msa0027820:three_prime_UTR 40.0%
! ATGCATGTGTTTTGTGGTTG+AGG + chr1_1:52430473-52430492 Msa0027820:three_prime_UTR 40.0%
! ATGTGTTTTGTGGTTGAGGT+AGG + chr1_1:52430477-52430496 Msa0027820:intron 40.0%
ATCGATGAATTGTCTGTCAC+AGG + chr1_1:52430669-52430688 Msa0027820:intron 40.0%
TCGATGAATTGTCTGTCACA+GGG + chr1_1:52430670-52430689 Msa0027820:intron 40.0%
TCCTAAGACTTCTTTGCTTG+GGG - chr1_1:52430881-52430900 None:intergenic 40.0%
CTCCTAAGACTTCTTTGCTT+GGG - chr1_1:52430882-52430901 None:intergenic 40.0%
TCTCCTAAGACTTCTTTGCT+TGG - chr1_1:52430883-52430902 None:intergenic 40.0%
AGCAAAGAAGTCTTAGGAGA+AGG + chr1_1:52430883-52430902 Msa0027820:three_prime_UTR 40.0%
CTTAGGAGAAGGAAACTTGT+TGG + chr1_1:52430894-52430913 Msa0027820:three_prime_UTR 40.0%
! AAGTGAGTGAGAGGTGTGAT+GGG + chr1_1:52425861-52425880 Msa0027820:five_prime_UTR 45.0%
GGGTAGGGATAGGTTGTTAT+TGG + chr1_1:52425881-52425900 Msa0027820:five_prime_UTR 45.0%
!!! GGTTTCTTTTTTTGAGGGGG+TGG + chr1_1:52426016-52426035 Msa0027820:five_prime_UTR 45.0%
!!! TTCTTTTTTTGAGGGGGTGG+TGG + chr1_1:52426019-52426038 Msa0027820:five_prime_UTR 45.0%
GTGGAAGAAGGTGAAGAAGA+TGG + chr1_1:52426125-52426144 Msa0027820:exon 45.0%
CCCCACAAAACCAACTTGTA+AGG - chr1_1:52426650-52426669 None:intergenic 45.0%
!!! TGGTTTTGTGGGGTTGAGTT+AGG + chr1_1:52426657-52426676 Msa0027820:intron 45.0%
GTCAAGACTTGACATCTGGA+GGG - chr1_1:52426759-52426778 None:intergenic 45.0%
TGTCAAGACTTGACATCTGG+AGG - chr1_1:52426760-52426779 None:intergenic 45.0%
TTGCAGGATCTTAACATGGG+AGG + chr1_1:52426892-52426911 Msa0027820:intron 45.0%
TATGTGCTCTCAGAACACCT+TGG + chr1_1:52426958-52426977 Msa0027820:CDS 45.0%
ACCTTGGAGCAGATCTATGT+TGG + chr1_1:52426974-52426993 Msa0027820:CDS 45.0%
TCCAACATAGATCTGCTCCA+AGG - chr1_1:52426978-52426997 None:intergenic 45.0%
! CCAAGTTGAACAACTCCAAG+TGG - chr1_1:52427413-52427432 None:intergenic 45.0%
CCACTTGGAGTTGTTCAACT+TGG + chr1_1:52427410-52427429 Msa0027820:CDS 45.0%
!! CTTGGTGGTGATTGAAGCAT+TGG + chr1_1:52427669-52427688 Msa0027820:intron 45.0%
! CATGTAAGGCTTGGTAAGTC+AGG - chr1_1:52427908-52427927 None:intergenic 45.0%
ACCAAGCCTTACATGTTGAC+AGG + chr1_1:52427913-52427932 Msa0027820:intron 45.0%
TGTCATCTGTGAATGCAGGT+TGG + chr1_1:52428090-52428109 Msa0027820:intron 45.0%
!! AATGCAGGTTGGTGAAGACA+TGG + chr1_1:52428101-52428120 Msa0027820:intron 45.0%
!! ATGCAGGTTGGTGAAGACAT+GGG + chr1_1:52428102-52428121 Msa0027820:intron 45.0%
! CGCTTTGGATTTGACTAGGA+AGG - chr1_1:52428185-52428204 None:intergenic 45.0%
GTGTGTTACGTTTCACGCTT+TGG - chr1_1:52428200-52428219 None:intergenic 45.0%
ATCAAGTGTTTCACCCGTCA+TGG - chr1_1:52428229-52428248 None:intergenic 45.0%
GACGGGTGAAACACTTGATA+TGG + chr1_1:52428230-52428249 Msa0027820:CDS 45.0%
! CTTTTCCCAGGACATTGGAA+GGG - chr1_1:52428261-52428280 None:intergenic 45.0%
! GGAGATGAATAGCTTTTCCC+AGG - chr1_1:52428273-52428292 None:intergenic 45.0%
TATTGATGTGGCCAAACACG+AGG + chr1_1:52428314-52428333 Msa0027820:CDS 45.0%
ATTGATGTGGCCAAACACGA+GGG + chr1_1:52428315-52428334 Msa0027820:CDS 45.0%
AATTTCAAGCCCCTCGTGTT+TGG - chr1_1:52428328-52428347 None:intergenic 45.0%
! TCAGACCGAGTCTTTTTACG+AGG + chr1_1:52428602-52428621 Msa0027820:CDS 45.0%
! TTACATGAAGCACTTGGACC+AGG + chr1_1:52428663-52428682 Msa0027820:CDS 45.0%
! ATCTCGTCCGGAACATCTTT+TGG + chr1_1:52428791-52428810 Msa0027820:CDS 45.0%
!! GGAACATCTTTTGGAAGCAG+TGG + chr1_1:52428800-52428819 Msa0027820:CDS 45.0%
! ATTGTGTCCTGCACTGATGT+AGG - chr1_1:52428879-52428898 None:intergenic 45.0%
TACATCAGTGCAGGACACAA+TGG + chr1_1:52428878-52428897 Msa0027820:CDS 45.0%
TTGAGTTTGTCAGGGATCTG+CGG + chr1_1:52429011-52429030 Msa0027820:CDS 45.0%
AACTGGTTACTACACGAGCT+AGG - chr1_1:52429071-52429090 None:intergenic 45.0%
CGTGTAGTAACCAGTTTGAG+AGG + chr1_1:52429075-52429094 Msa0027820:CDS 45.0%
GTTCAGAAGACCTCTCAAAC+TGG - chr1_1:52429088-52429107 None:intergenic 45.0%
AAAGTTGTAGGCCTAGACCA+AGG + chr1_1:52429143-52429162 Msa0027820:CDS 45.0%
AAGTTGTAGGCCTAGACCAA+GGG + chr1_1:52429144-52429163 Msa0027820:CDS 45.0%
CAAGATACCTTTGCTCCGTT+TGG - chr1_1:52429217-52429236 None:intergenic 45.0%
AATCCTGTCTCAGTAGGCTT+TGG + chr1_1:52429256-52429275 Msa0027820:intron 45.0%
AAACCAAAGCCTACTGAGAC+AGG - chr1_1:52429262-52429281 None:intergenic 45.0%
GTTCCAATTCTTGTGGCTGA+AGG + chr1_1:52429303-52429322 Msa0027820:intron 45.0%
CAGCATGCTTAGTTACGCTT+TGG - chr1_1:52429400-52429419 None:intergenic 45.0%
! CATAGGTGTGAGGTATCCAT+TGG - chr1_1:52429699-52429718 None:intergenic 45.0%
GTTACAATGGCATAGGTGTG+AGG - chr1_1:52429709-52429728 None:intergenic 45.0%
ACCTATGCCATTGTAACCCA+GGG + chr1_1:52429712-52429731 Msa0027820:intron 45.0%
AACTGCGCAGTTGCATCATA+TGG + chr1_1:52430109-52430128 Msa0027820:intron 45.0%
TCATGAATGTGTGGTGCTCT+TGG - chr1_1:52430758-52430777 None:intergenic 45.0%
TTCTTTGCTTGGGGAAAGCA+GGG - chr1_1:52430872-52430891 None:intergenic 45.0%
TCCCCAAGCAAAGAAGTCTT+AGG + chr1_1:52430877-52430896 Msa0027820:three_prime_UTR 45.0%
! TTTGAGGTTCGAAGGTTGGG+AGG + chr1_1:52425838-52425857 Msa0027820:five_prime_UTR 50.0%
! GAAGTGAGTGAGAGGTGTGA+TGG + chr1_1:52425860-52425879 Msa0027820:five_prime_UTR 50.0%
!! AGTGAGAGGTGTGATGGGTA+GGG + chr1_1:52425866-52425885 Msa0027820:five_prime_UTR 50.0%
TGGTCGGACCGCCATTAAAA+CGG + chr1_1:52425907-52425926 Msa0027820:five_prime_UTR 50.0%
!! AACCCTGCTCGCCGTTTTAA+TGG - chr1_1:52425921-52425940 None:intergenic 50.0%
AGGAGGAAACAAGCTGGAAG+AGG + chr1_1:52425942-52425961 Msa0027820:five_prime_UTR 50.0%
GGAGGAAACAAGCTGGAAGA+GGG + chr1_1:52425943-52425962 Msa0027820:five_prime_UTR 50.0%
! GCTGGAAGAGGGTCTTATAG+AGG + chr1_1:52425954-52425973 Msa0027820:five_prime_UTR 50.0%
!!! TTTTTTTGAGGGGGTGGTGG+TGG + chr1_1:52426022-52426041 Msa0027820:five_prime_UTR 50.0%
!!! TTTTTTGAGGGGGTGGTGGT+GGG + chr1_1:52426023-52426042 Msa0027820:five_prime_UTR 50.0%
AGACTAGGGACTAGGGACTA+GGG + chr1_1:52426050-52426069 Msa0027820:five_prime_UTR 50.0%
GGGTGTCTCACCTTACAAGT+TGG + chr1_1:52426637-52426656 Msa0027820:intron 50.0%
CACCTGCTATCAGATCACCT+GGG + chr1_1:52426730-52426749 Msa0027820:intron 50.0%
TTGGTGTGGCAATTGCTTGC+AGG + chr1_1:52426876-52426895 Msa0027820:intron 50.0%
GTTGGACAGGTAGCTGTTAC+TGG + chr1_1:52427167-52427186 Msa0027820:CDS 50.0%
GTCGTAGCAGTACTACCACT+TGG + chr1_1:52427395-52427414 Msa0027820:CDS 50.0%
GCCTGTCAACATGTAAGGCT+TGG - chr1_1:52427917-52427936 None:intergenic 50.0%
!! TGCAGGTTGGTGAAGACATG+GGG + chr1_1:52428103-52428122 Msa0027820:intron 50.0%
TAACGCCCTTCCAATGTCCT+GGG + chr1_1:52428253-52428272 Msa0027820:CDS 50.0%
! GCTTTTCCCAGGACATTGGA+AGG - chr1_1:52428262-52428281 None:intergenic 50.0%
TTGATGTGGCCAAACACGAG+GGG + chr1_1:52428316-52428335 Msa0027820:CDS 50.0%
CTAGGCCAGGTGAAAGTTGT+AGG + chr1_1:52429131-52429150 Msa0027820:CDS 50.0%
CTAGGCCTACAACTTTCACC+TGG - chr1_1:52429139-52429158 None:intergenic 50.0%
AGTTGTCTGTCCCTTGGTCT+AGG - chr1_1:52429157-52429176 None:intergenic 50.0%
TGGATCAGTTGTCTGTCCCT+TGG - chr1_1:52429163-52429182 None:intergenic 50.0%
CACCTATGCCATTGTAACCC+AGG + chr1_1:52429711-52429730 Msa0027820:intron 50.0%
ACCCTGGGTTACAATGGCAT+AGG - chr1_1:52429716-52429735 None:intergenic 50.0%
TGATGCAACTGCGCAGTTGT+AGG - chr1_1:52430107-52430126 None:intergenic 50.0%
!! ACAGGGTTCAAGTTGGGCAA+TGG + chr1_1:52430169-52430188 Msa0027820:three_prime_UTR 50.0%
!! TCAAGTTGGGCAATGGAGGT+AGG + chr1_1:52430176-52430195 Msa0027820:three_prime_UTR 50.0%
! GAATGGGCAGATGCTTGTTG+AGG + chr1_1:52430244-52430263 Msa0027820:three_prime_UTR 50.0%
CATGCTACAGATGCTCTGTG+AGG + chr1_1:52430359-52430378 Msa0027820:intron 50.0%
CGTCAGTCCCAAGCTTCTTA+CGG - chr1_1:52430415-52430434 None:intergenic 50.0%
CTTCTTTGCTTGGGGAAAGC+AGG - chr1_1:52430873-52430892 None:intergenic 50.0%
GTTGGGAGGAAGTGAGTGAG+AGG + chr1_1:52425852-52425871 Msa0027820:five_prime_UTR 55.0%
!! GAGTGAGAGGTGTGATGGGT+AGG + chr1_1:52425865-52425884 Msa0027820:five_prime_UTR 55.0%
!! GAGGTGTGATGGGTAGGGAT+AGG + chr1_1:52425871-52425890 Msa0027820:five_prime_UTR 55.0%
!! CCTGCTCGCCGTTTTAATGG+CGG - chr1_1:52425918-52425937 None:intergenic 55.0%
CGCCATTAAAACGGCGAGCA+GGG + chr1_1:52425916-52425935 Msa0027820:five_prime_UTR 55.0%
TAAAACGGCGAGCAGGGTTG+AGG + chr1_1:52425922-52425941 Msa0027820:five_prime_UTR 55.0%
GGGTTGAGGAGGAAACAAGC+TGG + chr1_1:52425936-52425955 Msa0027820:five_prime_UTR 55.0%
!! TGGTGGTGGGAGAGAGACTA+GGG + chr1_1:52426036-52426055 Msa0027820:five_prime_UTR 55.0%
TGGGAGAGAGACTAGGGACT+AGG + chr1_1:52426042-52426061 Msa0027820:five_prime_UTR 55.0%
GGGAGAGAGACTAGGGACTA+GGG + chr1_1:52426043-52426062 Msa0027820:five_prime_UTR 55.0%
GAGACTAGGGACTAGGGACT+AGG + chr1_1:52426049-52426068 Msa0027820:five_prime_UTR 55.0%
CCAGGTGATCTGATAGCAGG+TGG - chr1_1:52426732-52426751 None:intergenic 55.0%
CCACCTGCTATCAGATCACC+TGG + chr1_1:52426729-52426748 Msa0027820:intron 55.0%
GACCCAGGTGATCTGATAGC+AGG - chr1_1:52426735-52426754 None:intergenic 55.0%
GTAACGCCCTTCCAATGTCC+TGG + chr1_1:52428252-52428271 Msa0027820:CDS 55.0%
! ACTGGTGCCAAACGGAGCAA+AGG + chr1_1:52429207-52429226 Msa0027820:three_prime_UTR 55.0%
CCAGCTACCCTGGGTTACAA+TGG - chr1_1:52429722-52429741 None:intergenic 55.0%
CCATTGTAACCCAGGGTAGC+TGG + chr1_1:52429719-52429738 Msa0027820:intron 55.0%
!! GGGTTCAAGTTGGGCAATGG+AGG + chr1_1:52430172-52430191 Msa0027820:three_prime_UTR 55.0%
AGTTGGGCAATGGAGGTAGG+AGG + chr1_1:52430179-52430198 Msa0027820:three_prime_UTR 55.0%
AACGGTGCAAGTGAAGCTCG+TGG + chr1_1:52430441-52430460 Msa0027820:three_prime_UTR 55.0%
TTGGGGAAAGCAGGGAGGAA+GGG - chr1_1:52430864-52430883 None:intergenic 55.0%
TTTGCTTGGGGAAAGCAGGG+AGG - chr1_1:52430869-52430888 None:intergenic 55.0%
CCGCCATTAAAACGGCGAGC+AGG + chr1_1:52425915-52425934 Msa0027820:five_prime_UTR 60.0%
!! GTGGTGGTGGGAGAGAGACT+AGG + chr1_1:52426035-52426054 Msa0027820:five_prime_UTR 60.0%
TGACATCTGGAGGGTGACCC+AGG - chr1_1:52426750-52426769 None:intergenic 60.0%
CAGCAAAAGAGGGCTAGGCC+AGG + chr1_1:52429118-52429137 Msa0027820:CDS 60.0%
CTTGGGGAAAGCAGGGAGGA+AGG - chr1_1:52430865-52430884 None:intergenic 60.0%
AACGGCGAGCAGGGTTGAGG+AGG + chr1_1:52425925-52425944 Msa0027820:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 52425412 52431190 52425412 ID=Msa0027820;Name=Msa0027820
chr1_1 mRNA 52425412 52431190 52425412 ID=Msa0027820-mRNA-1;Parent=Msa0027820;Name=Msa0027820-mRNA-1;_AED=0.05;_eAED=0.05;_QI=732|0.75|0.77|1|0.75|0.77|9|931|507
chr1_1 exon 52425412 52426238 52425412 ID=Msa0027820-mRNA-1:exon:15368;Parent=Msa0027820-mRNA-1
chr1_1 exon 52426898 52427068 52426898 ID=Msa0027820-mRNA-1:exon:15369;Parent=Msa0027820-mRNA-1
chr1_1 exon 52427142 52427247 52427142 ID=Msa0027820-mRNA-1:exon:15370;Parent=Msa0027820-mRNA-1
chr1_1 exon 52427365 52427445 52427365 ID=Msa0027820-mRNA-1:exon:15371;Parent=Msa0027820-mRNA-1
chr1_1 exon 52428108 52429228 52428108 ID=Msa0027820-mRNA-1:exon:15372;Parent=Msa0027820-mRNA-1
chr1_1 exon 52429347 52429454 52429347 ID=Msa0027820-mRNA-1:exon:15373;Parent=Msa0027820-mRNA-1
chr1_1 exon 52430119 52430265 52430119 ID=Msa0027820-mRNA-1:exon:15374;Parent=Msa0027820-mRNA-1
chr1_1 exon 52430369 52430494 52430369 ID=Msa0027820-mRNA-1:exon:15375;Parent=Msa0027820-mRNA-1
chr1_1 exon 52430691 52431190 52430691 ID=Msa0027820-mRNA-1:exon:15376;Parent=Msa0027820-mRNA-1
chr1_1 five_prime_UTR 52425412 52426143 52425412 ID=Msa0027820-mRNA-1:five_prime_utr;Parent=Msa0027820-mRNA-1
chr1_1 CDS 52426144 52426238 52426144 ID=Msa0027820-mRNA-1:cds;Parent=Msa0027820-mRNA-1
chr1_1 CDS 52426898 52427068 52426898 ID=Msa0027820-mRNA-1:cds;Parent=Msa0027820-mRNA-1
chr1_1 CDS 52427142 52427247 52427142 ID=Msa0027820-mRNA-1:cds;Parent=Msa0027820-mRNA-1
chr1_1 CDS 52427365 52427445 52427365 ID=Msa0027820-mRNA-1:cds;Parent=Msa0027820-mRNA-1
chr1_1 CDS 52428108 52429178 52428108 ID=Msa0027820-mRNA-1:cds;Parent=Msa0027820-mRNA-1
chr1_1 three_prime_UTR 52429179 52429228 52429179 ID=Msa0027820-mRNA-1:three_prime_utr;Parent=Msa0027820-mRNA-1
chr1_1 three_prime_UTR 52429347 52429454 52429347 ID=Msa0027820-mRNA-1:three_prime_utr;Parent=Msa0027820-mRNA-1
chr1_1 three_prime_UTR 52430119 52430265 52430119 ID=Msa0027820-mRNA-1:three_prime_utr;Parent=Msa0027820-mRNA-1
chr1_1 three_prime_UTR 52430369 52430494 52430369 ID=Msa0027820-mRNA-1:three_prime_utr;Parent=Msa0027820-mRNA-1
chr1_1 three_prime_UTR 52430691 52431190 52430691 ID=Msa0027820-mRNA-1:three_prime_utr;Parent=Msa0027820-mRNA-1
Gene Sequence

>Msa0027820

ATGGGTACCAATTTGCATCAACTACTAAGAAGCCTTTGTTTGGATACTGATTGGAAGTATGCTATCTTTTGGAAGCTACAACGTTGTGCTAGAATGATCTTAACATGGGAGGATGCTTACTATGACAACCCTGATAATTGTGATTCTTCCCAAAGTATGTGCTCTCAGAACACCTTGGAGCAGATCTATGTTGGAGATTTTTCACATGACCCTCTAGGATTATCTGTTGCGAAGATGCCGTATCATGTATATTCGTTAGGGGAAGGCCTAATGTCCTGTTTCTACAGTATGGTTGGACAGGTAGCTGTTACTGGAAAACATCAGTGGATCTGTGCAGATAATCAAGTTACAATTTCTAGTCCATCTTTTAAGAGCTTTGCCTTGCATTTACAGACAATTGTTGTCGTAGCAGTACTACCACTTGGAGTTGTTCAACTTGGATCCTTAAATAAAGTTGGTGAAGACATGGGGTTTGTAACTCACATAAGAAGTCTCTTTTTGTCTATTCGTGATCACACATTAGGTTGCCTTCCTAGTCAAATCCAAAGCGTGAAACGTAACACACAGAAAACCATGACGGGTGAAACACTTGATATGGTAACGCCCTTCCAATGTCCTGGGAAAAGCTATTCATCTCCTACTGTTTATCAGAAAATGACTATTGATGTGGCCAAACACGAGGGGCTTGAAATTGACAGCGATCAAGGTTCCATCTTGCTTCAATCGATGTCAAATATGATGACTGCAGAGAATACGAAACAAGTAGGGATGAAACCTTCAAATGAAAGGATGTGTGAAGGGAACAATAATGGCTGCAAAGATACTAGTTTGAAACCAGACAAAAATGTCTCATCGTTTTTACACAATTCAGTTATGGATTATAATAGTACCAAAGATTTAACAAGTCCATCAGAAAATGTAGAAGCTGATACTGAGATGTCAAAGTTTCAGACCGAGTCTTTTTACGAGGATACCTCATACACATTGAAATTTCCTGCTGGTTATGAGTTACATGAAGCACTTGGACCAGGTTTTCTCAAAGAGAGTAAATATTTTGATTGGACGGTACAAGGAAATCAAGATAGTAAAGCTTCTGAGATGTCAGATGAGATTAGCTGCAGCCAATTGACTTTTGAATCTCGTCCGGAACATCTTTTGGAAGCAGTGGTGACCAAAGTTTGCCATAGTAATAATGATATTGTAGATAATGAGGTATCATTTCCTACATCAGTGCAGGACACAATGGTCTCTAGAAGAAAACCTGAAGTTTCTGTTCATAATGACCGAAATATTAATTCAGAAGGCTATTCAATTGATCAACCATCTCATATTAAAGAGGATATGCACCATCATAGTTTGAGTTTGTCAGGGATCTGCGGTGTGATATCCCCCAAAAGTTTTTCTTCTACATGTCCTAGCTCGTGTAGTAACCAGTTTGAGAGGTCTTCTGAACCATCTAAAAACAGCAAAAGAGGGCTAGGCCAGGTGAAAGTTGTAGGCCTAGACCAAGGGACAGACAACTGA
Protein sequence

>Msa0027820

MGTNLHQLLRSLCLDTDWKYAIFWKLQRCARMILTWEDAYYDNPDNCDSSQSMCSQNTLEQIYVGDFSHDPLGLSVAKMPYHVYSLGEGLMSCFYSMVGQVAVTGKHQWICADNQVTISSPSFKSFALHLQTIVVVAVLPLGVVQLGSLNKVGEDMGFVTHIRSLFLSIRDHTLGCLPSQIQSVKRNTQKTMTGETLDMVTPFQCPGKSYSSPTVYQKMTIDVAKHEGLEIDSDQGSILLQSMSNMMTAENTKQVGMKPSNERMCEGNNNGCKDTSLKPDKNVSSFLHNSVMDYNSTKDLTSPSENVEADTEMSKFQTESFYEDTSYTLKFPAGYELHEALGPGFLKESKYFDWTVQGNQDSKASEMSDEISCSQLTFESRPEHLLEAVVTKVCHSNNDIVDNEVSFPTSVQDTMVSRRKPEVSVHNDRNINSEGYSIDQPSHIKEDMHHHSLSLSGICGVISPKSFSSTCPSSCSNQFERSSEPSKNSKRGLGQVKVVGLDQGTDN*